Multiple sequence alignment - TraesCS3B01G481100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G481100 | chr3B | 100.000 | 4112 | 0 | 0 | 1 | 4112 | 728851297 | 728855408 | 0.000000e+00 | 7594 |
1 | TraesCS3B01G481100 | chr3B | 97.119 | 243 | 6 | 1 | 3871 | 4112 | 819912532 | 819912290 | 3.830000e-110 | 409 |
2 | TraesCS3B01G481100 | chrUn | 96.686 | 3138 | 103 | 1 | 1 | 3137 | 134333756 | 134330619 | 0.000000e+00 | 5217 |
3 | TraesCS3B01G481100 | chr3D | 96.622 | 3138 | 105 | 1 | 1 | 3137 | 579344618 | 579347755 | 0.000000e+00 | 5206 |
4 | TraesCS3B01G481100 | chr4D | 96.558 | 3138 | 107 | 1 | 1 | 3137 | 502618753 | 502621890 | 0.000000e+00 | 5195 |
5 | TraesCS3B01G481100 | chr2D | 96.368 | 3139 | 112 | 1 | 1 | 3137 | 82250617 | 82247479 | 0.000000e+00 | 5164 |
6 | TraesCS3B01G481100 | chr2D | 94.444 | 162 | 9 | 0 | 3951 | 4112 | 37869054 | 37868893 | 2.450000e-62 | 250 |
7 | TraesCS3B01G481100 | chr2D | 96.774 | 62 | 2 | 0 | 3871 | 3932 | 408526345 | 408526406 | 2.020000e-18 | 104 |
8 | TraesCS3B01G481100 | chr6B | 95.058 | 3197 | 149 | 6 | 1 | 3189 | 646100958 | 646104153 | 0.000000e+00 | 5020 |
9 | TraesCS3B01G481100 | chr6B | 98.347 | 242 | 4 | 0 | 3871 | 4112 | 381187695 | 381187454 | 3.800000e-115 | 425 |
10 | TraesCS3B01G481100 | chr1A | 95.380 | 2576 | 116 | 3 | 477 | 3049 | 394485024 | 394487599 | 0.000000e+00 | 4095 |
11 | TraesCS3B01G481100 | chr1A | 95.299 | 2340 | 108 | 2 | 712 | 3049 | 394415106 | 394417445 | 0.000000e+00 | 3711 |
12 | TraesCS3B01G481100 | chr1A | 94.510 | 255 | 13 | 1 | 3858 | 4112 | 551184044 | 551183791 | 3.850000e-105 | 392 |
13 | TraesCS3B01G481100 | chr1A | 94.628 | 242 | 13 | 0 | 3871 | 4112 | 515557429 | 515557670 | 3.880000e-100 | 375 |
14 | TraesCS3B01G481100 | chr1A | 94.215 | 242 | 14 | 0 | 3871 | 4112 | 287575226 | 287575467 | 1.810000e-98 | 370 |
15 | TraesCS3B01G481100 | chr5A | 94.536 | 2544 | 135 | 4 | 477 | 3016 | 542029676 | 542027133 | 0.000000e+00 | 3925 |
16 | TraesCS3B01G481100 | chr4B | 94.120 | 2109 | 115 | 5 | 909 | 3015 | 524149752 | 524147651 | 0.000000e+00 | 3199 |
17 | TraesCS3B01G481100 | chr7D | 95.330 | 1713 | 78 | 2 | 1 | 1711 | 109456095 | 109457807 | 0.000000e+00 | 2719 |
18 | TraesCS3B01G481100 | chr7D | 96.047 | 430 | 17 | 0 | 2708 | 3137 | 109457801 | 109458230 | 0.000000e+00 | 701 |
19 | TraesCS3B01G481100 | chr7D | 95.161 | 62 | 3 | 0 | 3871 | 3932 | 162157056 | 162157117 | 9.410000e-17 | 99 |
20 | TraesCS3B01G481100 | chr4A | 94.832 | 774 | 35 | 4 | 3099 | 3871 | 687961129 | 687960360 | 0.000000e+00 | 1203 |
21 | TraesCS3B01G481100 | chr5D | 97.368 | 190 | 5 | 0 | 2948 | 3137 | 531438778 | 531438589 | 1.430000e-84 | 324 |
22 | TraesCS3B01G481100 | chr5D | 95.062 | 162 | 8 | 0 | 3951 | 4112 | 501357533 | 501357372 | 5.270000e-64 | 255 |
23 | TraesCS3B01G481100 | chr5D | 95.161 | 62 | 3 | 0 | 3871 | 3932 | 501358313 | 501358252 | 9.410000e-17 | 99 |
24 | TraesCS3B01G481100 | chr1D | 95.706 | 163 | 6 | 1 | 3951 | 4112 | 202963547 | 202963709 | 1.130000e-65 | 261 |
25 | TraesCS3B01G481100 | chr1D | 96.774 | 62 | 2 | 0 | 3871 | 3932 | 202962769 | 202962830 | 2.020000e-18 | 104 |
26 | TraesCS3B01G481100 | chr6D | 95.062 | 162 | 8 | 0 | 3951 | 4112 | 156818115 | 156817954 | 5.270000e-64 | 255 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G481100 | chr3B | 728851297 | 728855408 | 4111 | False | 7594 | 7594 | 100.0000 | 1 | 4112 | 1 | chr3B.!!$F1 | 4111 |
1 | TraesCS3B01G481100 | chrUn | 134330619 | 134333756 | 3137 | True | 5217 | 5217 | 96.6860 | 1 | 3137 | 1 | chrUn.!!$R1 | 3136 |
2 | TraesCS3B01G481100 | chr3D | 579344618 | 579347755 | 3137 | False | 5206 | 5206 | 96.6220 | 1 | 3137 | 1 | chr3D.!!$F1 | 3136 |
3 | TraesCS3B01G481100 | chr4D | 502618753 | 502621890 | 3137 | False | 5195 | 5195 | 96.5580 | 1 | 3137 | 1 | chr4D.!!$F1 | 3136 |
4 | TraesCS3B01G481100 | chr2D | 82247479 | 82250617 | 3138 | True | 5164 | 5164 | 96.3680 | 1 | 3137 | 1 | chr2D.!!$R2 | 3136 |
5 | TraesCS3B01G481100 | chr6B | 646100958 | 646104153 | 3195 | False | 5020 | 5020 | 95.0580 | 1 | 3189 | 1 | chr6B.!!$F1 | 3188 |
6 | TraesCS3B01G481100 | chr1A | 394485024 | 394487599 | 2575 | False | 4095 | 4095 | 95.3800 | 477 | 3049 | 1 | chr1A.!!$F3 | 2572 |
7 | TraesCS3B01G481100 | chr1A | 394415106 | 394417445 | 2339 | False | 3711 | 3711 | 95.2990 | 712 | 3049 | 1 | chr1A.!!$F2 | 2337 |
8 | TraesCS3B01G481100 | chr5A | 542027133 | 542029676 | 2543 | True | 3925 | 3925 | 94.5360 | 477 | 3016 | 1 | chr5A.!!$R1 | 2539 |
9 | TraesCS3B01G481100 | chr4B | 524147651 | 524149752 | 2101 | True | 3199 | 3199 | 94.1200 | 909 | 3015 | 1 | chr4B.!!$R1 | 2106 |
10 | TraesCS3B01G481100 | chr7D | 109456095 | 109458230 | 2135 | False | 1710 | 2719 | 95.6885 | 1 | 3137 | 2 | chr7D.!!$F2 | 3136 |
11 | TraesCS3B01G481100 | chr4A | 687960360 | 687961129 | 769 | True | 1203 | 1203 | 94.8320 | 3099 | 3871 | 1 | chr4A.!!$R1 | 772 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
193 | 194 | 0.689055 | AGTCAAGAGCATGCTGGTCA | 59.311 | 50.0 | 28.27 | 3.1 | 46.52 | 4.02 | F |
1161 | 1168 | 1.304891 | CCAACCCCCAGGAGGATTTA | 58.695 | 55.0 | 0.00 | 0.0 | 38.24 | 1.40 | F |
2416 | 2430 | 0.393132 | GTTGCAGGCTAGGGTCCTTC | 60.393 | 60.0 | 0.00 | 0.0 | 0.00 | 3.46 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1945 | 1956 | 0.511221 | GCTCGCAAGCTTACGAACAA | 59.489 | 50.0 | 21.43 | 0.85 | 45.55 | 2.83 | R |
2797 | 2811 | 0.463833 | CAAGGCTGTCGTAATCCCCC | 60.464 | 60.0 | 0.00 | 0.00 | 0.00 | 5.40 | R |
3984 | 4000 | 0.108138 | GCAGCGGTTACTGGTCATCT | 60.108 | 55.0 | 0.00 | 0.00 | 38.16 | 2.90 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 4.219944 | GTGGGATTCAGTATATAGACGGCA | 59.780 | 45.833 | 0.00 | 0.00 | 0.00 | 5.69 |
63 | 64 | 8.070034 | TGTTGAGATAGGCATCATGAATTTTT | 57.930 | 30.769 | 0.00 | 0.00 | 33.21 | 1.94 |
70 | 71 | 9.252962 | GATAGGCATCATGAATTTTTGGTAAAG | 57.747 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
153 | 154 | 9.511272 | CAACATATCTTTATCATTCCAGATGGA | 57.489 | 33.333 | 0.00 | 0.00 | 43.73 | 3.41 |
193 | 194 | 0.689055 | AGTCAAGAGCATGCTGGTCA | 59.311 | 50.000 | 28.27 | 3.10 | 46.52 | 4.02 |
197 | 198 | 2.092592 | TCAAGAGCATGCTGGTCATCAT | 60.093 | 45.455 | 28.27 | 0.00 | 46.52 | 2.45 |
213 | 214 | 5.163754 | GGTCATCATTTGTACCACTTGTAGC | 60.164 | 44.000 | 0.00 | 0.00 | 32.04 | 3.58 |
258 | 259 | 5.464965 | AATTGCAGTTACGTACATACAGC | 57.535 | 39.130 | 0.00 | 0.18 | 0.00 | 4.40 |
302 | 303 | 1.606668 | GAGACTATGAGGGAGAGCACG | 59.393 | 57.143 | 0.00 | 0.00 | 0.00 | 5.34 |
677 | 679 | 6.099701 | TCAACTCTATGTGTAGCCATTATGGT | 59.900 | 38.462 | 13.28 | 2.60 | 40.46 | 3.55 |
714 | 717 | 5.603596 | TGTACGCATACTTAATTCGGGATT | 58.396 | 37.500 | 0.00 | 0.00 | 32.00 | 3.01 |
719 | 722 | 5.236478 | CGCATACTTAATTCGGGATTTCTGT | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
802 | 807 | 9.474313 | TGCCTTAGGAACAAAATATTCAACTAT | 57.526 | 29.630 | 0.69 | 0.00 | 0.00 | 2.12 |
879 | 884 | 8.752766 | AGAATCATCTACGTCTTAAAAACGAA | 57.247 | 30.769 | 14.85 | 3.26 | 42.98 | 3.85 |
945 | 952 | 7.433680 | TCCGTTTATATATATGCTGCATCGAT | 58.566 | 34.615 | 19.90 | 15.22 | 0.00 | 3.59 |
1066 | 1073 | 2.571757 | CGCGCACTTACCAGGAGA | 59.428 | 61.111 | 8.75 | 0.00 | 0.00 | 3.71 |
1115 | 1122 | 3.015145 | CCCCGACCCCAATGAGGT | 61.015 | 66.667 | 0.00 | 0.00 | 41.50 | 3.85 |
1132 | 1139 | 2.853542 | TTGCCCTCCAGCTCCACA | 60.854 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
1161 | 1168 | 1.304891 | CCAACCCCCAGGAGGATTTA | 58.695 | 55.000 | 0.00 | 0.00 | 38.24 | 1.40 |
1282 | 1289 | 8.138712 | AGACACTAGAGTAAGTTATGCTATTGC | 58.861 | 37.037 | 0.00 | 0.00 | 40.20 | 3.56 |
1337 | 1344 | 2.901338 | AGGTCCTACACAGCAGACTA | 57.099 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1612 | 1620 | 4.700213 | GTGCTACCTAAATTTTCCTGCTCA | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1696 | 1704 | 5.237127 | GCTAGAAGGTGCTGCAAAAATTTTT | 59.763 | 36.000 | 10.41 | 10.41 | 0.00 | 1.94 |
1945 | 1956 | 1.207089 | TCCCGAATGCTTCAATCTCGT | 59.793 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
2027 | 2038 | 7.440856 | GGAGGAAAACATTATTTTGACTTGCAA | 59.559 | 33.333 | 0.00 | 0.00 | 33.88 | 4.08 |
2218 | 2232 | 6.555315 | CAAATAACCTATGTTGACCTTCTGC | 58.445 | 40.000 | 0.00 | 0.00 | 35.87 | 4.26 |
2276 | 2290 | 6.153170 | TCGTATGGTCTACTTGTGGTAAATCA | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2416 | 2430 | 0.393132 | GTTGCAGGCTAGGGTCCTTC | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2485 | 2499 | 8.599774 | CATTCAATTTTCGGCGGTAATTTAATT | 58.400 | 29.630 | 7.21 | 0.00 | 0.00 | 1.40 |
2797 | 2811 | 1.372087 | GCTGCTGGAAACATCCCTCG | 61.372 | 60.000 | 0.00 | 0.00 | 41.51 | 4.63 |
2800 | 2814 | 1.224592 | CTGGAAACATCCCTCGGGG | 59.775 | 63.158 | 0.00 | 0.00 | 41.51 | 5.73 |
2810 | 2824 | 3.944123 | CCTCGGGGGATTACGACA | 58.056 | 61.111 | 0.00 | 0.00 | 37.23 | 4.35 |
3185 | 3200 | 8.409358 | AAAAACAGGCTGAAAATCTACTACAT | 57.591 | 30.769 | 23.66 | 0.00 | 0.00 | 2.29 |
3236 | 3251 | 1.214367 | CGATATTAGGCCGTGCGTTT | 58.786 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
3284 | 3299 | 6.542005 | TGCATCCAATCGTTTACAATGTAGAT | 59.458 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
3378 | 3394 | 6.907206 | AAAAATTTCTGGATTGTGTGTGTG | 57.093 | 33.333 | 0.00 | 0.00 | 0.00 | 3.82 |
3381 | 3397 | 5.850557 | ATTTCTGGATTGTGTGTGTGAAA | 57.149 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
3385 | 3401 | 7.523293 | TTCTGGATTGTGTGTGTGAAAATAT | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3386 | 3402 | 6.912082 | TCTGGATTGTGTGTGTGAAAATATG | 58.088 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
3387 | 3403 | 6.489700 | TCTGGATTGTGTGTGTGAAAATATGT | 59.510 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
3496 | 3512 | 6.553953 | TCATAGTTATTTGCTGTAGGACCA | 57.446 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
3508 | 3524 | 4.631813 | GCTGTAGGACCAATGTGTCTAAAG | 59.368 | 45.833 | 0.00 | 0.00 | 35.54 | 1.85 |
3618 | 3634 | 6.117488 | TCGTTATTCCCCTTATTTTGACCTC | 58.883 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3623 | 3639 | 2.290705 | CCCCTTATTTTGACCTCCGTGT | 60.291 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3675 | 3691 | 9.691362 | GGTCTTTTGTTTCTATATTTTGCTTCA | 57.309 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
3787 | 3803 | 9.590451 | AAATTTCTGCCATATTATGAACAGTTG | 57.410 | 29.630 | 18.36 | 3.86 | 36.37 | 3.16 |
3814 | 3830 | 6.212388 | TGTTATGGAAATAAATGTGGCACCTT | 59.788 | 34.615 | 16.26 | 8.96 | 0.00 | 3.50 |
3827 | 3843 | 1.151450 | CACCTTCCAACCTGGTGCT | 59.849 | 57.895 | 0.00 | 0.00 | 43.61 | 4.40 |
3834 | 3850 | 1.968017 | CAACCTGGTGCTGCACGAT | 60.968 | 57.895 | 24.86 | 5.90 | 34.83 | 3.73 |
3863 | 3879 | 7.618019 | TCTGCCCTTAATCTGTACTCAATAT | 57.382 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3865 | 3881 | 9.326489 | TCTGCCCTTAATCTGTACTCAATATAT | 57.674 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
3886 | 3902 | 9.983024 | ATATATATTCACTAGTAGACTGCCTGT | 57.017 | 33.333 | 3.59 | 0.00 | 0.00 | 4.00 |
3887 | 3903 | 4.727507 | ATTCACTAGTAGACTGCCTGTG | 57.272 | 45.455 | 3.59 | 7.04 | 0.00 | 3.66 |
3888 | 3904 | 1.819288 | TCACTAGTAGACTGCCTGTGC | 59.181 | 52.381 | 3.59 | 0.00 | 38.26 | 4.57 |
3889 | 3905 | 0.811915 | ACTAGTAGACTGCCTGTGCG | 59.188 | 55.000 | 3.59 | 0.00 | 41.78 | 5.34 |
3890 | 3906 | 0.811915 | CTAGTAGACTGCCTGTGCGT | 59.188 | 55.000 | 0.00 | 0.00 | 41.78 | 5.24 |
3891 | 3907 | 1.202582 | CTAGTAGACTGCCTGTGCGTT | 59.797 | 52.381 | 0.00 | 0.00 | 41.78 | 4.84 |
3892 | 3908 | 0.319900 | AGTAGACTGCCTGTGCGTTG | 60.320 | 55.000 | 0.00 | 0.00 | 41.78 | 4.10 |
3893 | 3909 | 1.667830 | TAGACTGCCTGTGCGTTGC | 60.668 | 57.895 | 0.00 | 0.00 | 41.78 | 4.17 |
3894 | 3910 | 2.376228 | TAGACTGCCTGTGCGTTGCA | 62.376 | 55.000 | 0.00 | 0.00 | 41.78 | 4.08 |
3895 | 3911 | 2.828095 | ACTGCCTGTGCGTTGCAA | 60.828 | 55.556 | 0.00 | 0.00 | 41.47 | 4.08 |
3896 | 3912 | 2.353839 | CTGCCTGTGCGTTGCAAC | 60.354 | 61.111 | 19.89 | 19.89 | 41.47 | 4.17 |
3907 | 3923 | 3.354131 | GTTGCAACGGGCTTTTGAA | 57.646 | 47.368 | 14.90 | 0.00 | 45.15 | 2.69 |
3908 | 3924 | 1.646189 | GTTGCAACGGGCTTTTGAAA | 58.354 | 45.000 | 14.90 | 0.00 | 45.15 | 2.69 |
3909 | 3925 | 2.003301 | GTTGCAACGGGCTTTTGAAAA | 58.997 | 42.857 | 14.90 | 0.00 | 45.15 | 2.29 |
3910 | 3926 | 2.611225 | TGCAACGGGCTTTTGAAAAT | 57.389 | 40.000 | 3.00 | 0.00 | 45.15 | 1.82 |
3911 | 3927 | 2.911484 | TGCAACGGGCTTTTGAAAATT | 58.089 | 38.095 | 3.00 | 0.00 | 45.15 | 1.82 |
3912 | 3928 | 3.274288 | TGCAACGGGCTTTTGAAAATTT | 58.726 | 36.364 | 3.00 | 0.00 | 45.15 | 1.82 |
3913 | 3929 | 3.064545 | TGCAACGGGCTTTTGAAAATTTG | 59.935 | 39.130 | 0.00 | 0.00 | 45.15 | 2.32 |
3914 | 3930 | 3.064682 | GCAACGGGCTTTTGAAAATTTGT | 59.935 | 39.130 | 0.00 | 0.00 | 40.25 | 2.83 |
3915 | 3931 | 4.271291 | GCAACGGGCTTTTGAAAATTTGTA | 59.729 | 37.500 | 0.00 | 0.00 | 40.25 | 2.41 |
3916 | 3932 | 5.049749 | GCAACGGGCTTTTGAAAATTTGTAT | 60.050 | 36.000 | 0.00 | 0.00 | 40.25 | 2.29 |
3917 | 3933 | 6.512578 | GCAACGGGCTTTTGAAAATTTGTATT | 60.513 | 34.615 | 0.00 | 0.00 | 40.25 | 1.89 |
3918 | 3934 | 7.413644 | CAACGGGCTTTTGAAAATTTGTATTT | 58.586 | 30.769 | 0.00 | 0.00 | 35.49 | 1.40 |
3919 | 3935 | 6.953843 | ACGGGCTTTTGAAAATTTGTATTTG | 58.046 | 32.000 | 0.00 | 0.00 | 34.27 | 2.32 |
3920 | 3936 | 6.540551 | ACGGGCTTTTGAAAATTTGTATTTGT | 59.459 | 30.769 | 0.00 | 0.00 | 34.27 | 2.83 |
3921 | 3937 | 7.066404 | ACGGGCTTTTGAAAATTTGTATTTGTT | 59.934 | 29.630 | 0.00 | 0.00 | 34.27 | 2.83 |
3922 | 3938 | 7.375544 | CGGGCTTTTGAAAATTTGTATTTGTTG | 59.624 | 33.333 | 0.00 | 0.00 | 34.27 | 3.33 |
3923 | 3939 | 7.167302 | GGGCTTTTGAAAATTTGTATTTGTTGC | 59.833 | 33.333 | 0.00 | 0.00 | 34.27 | 4.17 |
3924 | 3940 | 7.699812 | GGCTTTTGAAAATTTGTATTTGTTGCA | 59.300 | 29.630 | 0.00 | 0.00 | 34.27 | 4.08 |
3925 | 3941 | 9.235537 | GCTTTTGAAAATTTGTATTTGTTGCAT | 57.764 | 25.926 | 0.00 | 0.00 | 34.27 | 3.96 |
3928 | 3944 | 9.713740 | TTTGAAAATTTGTATTTGTTGCATGTC | 57.286 | 25.926 | 0.00 | 0.00 | 34.27 | 3.06 |
3929 | 3945 | 8.429493 | TGAAAATTTGTATTTGTTGCATGTCA | 57.571 | 26.923 | 0.00 | 0.00 | 34.27 | 3.58 |
3930 | 3946 | 8.886719 | TGAAAATTTGTATTTGTTGCATGTCAA | 58.113 | 25.926 | 0.00 | 0.00 | 34.27 | 3.18 |
3931 | 3947 | 9.713740 | GAAAATTTGTATTTGTTGCATGTCAAA | 57.286 | 25.926 | 12.26 | 12.26 | 37.82 | 2.69 |
3932 | 3948 | 9.500864 | AAAATTTGTATTTGTTGCATGTCAAAC | 57.499 | 25.926 | 12.17 | 7.67 | 36.58 | 2.93 |
3933 | 3949 | 5.879948 | TTGTATTTGTTGCATGTCAAACG | 57.120 | 34.783 | 12.17 | 0.00 | 36.58 | 3.60 |
3934 | 3950 | 5.175090 | TGTATTTGTTGCATGTCAAACGA | 57.825 | 34.783 | 12.17 | 5.02 | 36.58 | 3.85 |
3935 | 3951 | 5.582550 | TGTATTTGTTGCATGTCAAACGAA | 58.417 | 33.333 | 12.17 | 11.65 | 36.58 | 3.85 |
3936 | 3952 | 6.036470 | TGTATTTGTTGCATGTCAAACGAAA | 58.964 | 32.000 | 12.17 | 8.85 | 36.58 | 3.46 |
3937 | 3953 | 5.640218 | ATTTGTTGCATGTCAAACGAAAG | 57.360 | 34.783 | 12.17 | 0.00 | 36.58 | 2.62 |
3938 | 3954 | 4.362932 | TTGTTGCATGTCAAACGAAAGA | 57.637 | 36.364 | 4.47 | 0.00 | 36.26 | 2.52 |
3939 | 3955 | 4.566545 | TGTTGCATGTCAAACGAAAGAT | 57.433 | 36.364 | 4.47 | 0.00 | 36.26 | 2.40 |
3940 | 3956 | 5.681337 | TGTTGCATGTCAAACGAAAGATA | 57.319 | 34.783 | 4.47 | 0.00 | 36.26 | 1.98 |
3941 | 3957 | 6.066054 | TGTTGCATGTCAAACGAAAGATAA | 57.934 | 33.333 | 4.47 | 0.00 | 36.26 | 1.75 |
3942 | 3958 | 6.676950 | TGTTGCATGTCAAACGAAAGATAAT | 58.323 | 32.000 | 4.47 | 0.00 | 36.26 | 1.28 |
3943 | 3959 | 7.811653 | TGTTGCATGTCAAACGAAAGATAATA | 58.188 | 30.769 | 4.47 | 0.00 | 36.26 | 0.98 |
3944 | 3960 | 8.293157 | TGTTGCATGTCAAACGAAAGATAATAA | 58.707 | 29.630 | 4.47 | 0.00 | 36.26 | 1.40 |
3945 | 3961 | 9.289303 | GTTGCATGTCAAACGAAAGATAATAAT | 57.711 | 29.630 | 4.47 | 0.00 | 36.26 | 1.28 |
3946 | 3962 | 9.853555 | TTGCATGTCAAACGAAAGATAATAATT | 57.146 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
3947 | 3963 | 9.288124 | TGCATGTCAAACGAAAGATAATAATTG | 57.712 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3948 | 3964 | 8.745837 | GCATGTCAAACGAAAGATAATAATTGG | 58.254 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3949 | 3965 | 8.745837 | CATGTCAAACGAAAGATAATAATTGGC | 58.254 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
3950 | 3966 | 7.821652 | TGTCAAACGAAAGATAATAATTGGCA | 58.178 | 30.769 | 0.00 | 0.00 | 0.00 | 4.92 |
3951 | 3967 | 8.300286 | TGTCAAACGAAAGATAATAATTGGCAA | 58.700 | 29.630 | 0.68 | 0.68 | 29.27 | 4.52 |
3952 | 3968 | 8.583765 | GTCAAACGAAAGATAATAATTGGCAAC | 58.416 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
3967 | 3983 | 3.477504 | CAACAAATGCCGACACTGG | 57.522 | 52.632 | 0.00 | 0.00 | 0.00 | 4.00 |
3968 | 3984 | 0.667993 | CAACAAATGCCGACACTGGT | 59.332 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3969 | 3985 | 1.876799 | CAACAAATGCCGACACTGGTA | 59.123 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
3970 | 3986 | 1.808411 | ACAAATGCCGACACTGGTAG | 58.192 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3971 | 3987 | 1.346395 | ACAAATGCCGACACTGGTAGA | 59.654 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
3972 | 3988 | 2.027192 | ACAAATGCCGACACTGGTAGAT | 60.027 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
3973 | 3989 | 2.604046 | AATGCCGACACTGGTAGATC | 57.396 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
3974 | 3990 | 1.485124 | ATGCCGACACTGGTAGATCA | 58.515 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3975 | 3991 | 1.262417 | TGCCGACACTGGTAGATCAA | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3976 | 3992 | 1.067142 | TGCCGACACTGGTAGATCAAC | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3977 | 3993 | 1.909376 | CCGACACTGGTAGATCAACG | 58.091 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
3978 | 3994 | 1.471287 | CCGACACTGGTAGATCAACGA | 59.529 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
3979 | 3995 | 2.094906 | CCGACACTGGTAGATCAACGAA | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3980 | 3996 | 3.571571 | CGACACTGGTAGATCAACGAAA | 58.428 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
3981 | 3997 | 3.364023 | CGACACTGGTAGATCAACGAAAC | 59.636 | 47.826 | 0.00 | 0.00 | 0.00 | 2.78 |
3982 | 3998 | 4.304110 | GACACTGGTAGATCAACGAAACA | 58.696 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
3983 | 3999 | 4.699637 | ACACTGGTAGATCAACGAAACAA | 58.300 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
3984 | 4000 | 5.120399 | ACACTGGTAGATCAACGAAACAAA | 58.880 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
3985 | 4001 | 5.236478 | ACACTGGTAGATCAACGAAACAAAG | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3986 | 4002 | 5.465390 | CACTGGTAGATCAACGAAACAAAGA | 59.535 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3987 | 4003 | 6.147821 | CACTGGTAGATCAACGAAACAAAGAT | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
3988 | 4004 | 6.147821 | ACTGGTAGATCAACGAAACAAAGATG | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
3989 | 4005 | 6.227522 | TGGTAGATCAACGAAACAAAGATGA | 58.772 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3990 | 4006 | 6.147164 | TGGTAGATCAACGAAACAAAGATGAC | 59.853 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
3991 | 4007 | 5.613358 | AGATCAACGAAACAAAGATGACC | 57.387 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
3992 | 4008 | 5.063204 | AGATCAACGAAACAAAGATGACCA | 58.937 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
3993 | 4009 | 4.811555 | TCAACGAAACAAAGATGACCAG | 57.188 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
3994 | 4010 | 4.196193 | TCAACGAAACAAAGATGACCAGT | 58.804 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
3995 | 4011 | 5.361427 | TCAACGAAACAAAGATGACCAGTA | 58.639 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
3996 | 4012 | 5.818336 | TCAACGAAACAAAGATGACCAGTAA | 59.182 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3997 | 4013 | 5.668558 | ACGAAACAAAGATGACCAGTAAC | 57.331 | 39.130 | 0.00 | 0.00 | 0.00 | 2.50 |
3998 | 4014 | 4.514066 | ACGAAACAAAGATGACCAGTAACC | 59.486 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
3999 | 4015 | 4.377022 | CGAAACAAAGATGACCAGTAACCG | 60.377 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
4000 | 4016 | 2.423577 | ACAAAGATGACCAGTAACCGC | 58.576 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
4001 | 4017 | 2.038557 | ACAAAGATGACCAGTAACCGCT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 5.52 |
4002 | 4018 | 2.386661 | AAGATGACCAGTAACCGCTG | 57.613 | 50.000 | 0.00 | 0.00 | 36.31 | 5.18 |
4003 | 4019 | 0.108138 | AGATGACCAGTAACCGCTGC | 60.108 | 55.000 | 0.00 | 0.00 | 35.28 | 5.25 |
4004 | 4020 | 0.391130 | GATGACCAGTAACCGCTGCA | 60.391 | 55.000 | 0.00 | 0.00 | 35.28 | 4.41 |
4005 | 4021 | 0.673644 | ATGACCAGTAACCGCTGCAC | 60.674 | 55.000 | 0.00 | 0.00 | 35.28 | 4.57 |
4006 | 4022 | 2.032071 | ACCAGTAACCGCTGCACC | 59.968 | 61.111 | 0.00 | 0.00 | 35.28 | 5.01 |
4007 | 4023 | 3.118454 | CCAGTAACCGCTGCACCG | 61.118 | 66.667 | 0.00 | 0.00 | 35.28 | 4.94 |
4008 | 4024 | 2.357034 | CAGTAACCGCTGCACCGT | 60.357 | 61.111 | 0.00 | 0.00 | 0.00 | 4.83 |
4009 | 4025 | 2.048503 | AGTAACCGCTGCACCGTC | 60.049 | 61.111 | 0.00 | 0.00 | 0.00 | 4.79 |
4010 | 4026 | 3.116531 | GTAACCGCTGCACCGTCC | 61.117 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4011 | 4027 | 4.728102 | TAACCGCTGCACCGTCCG | 62.728 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4030 | 4046 | 4.806571 | TGAAGTATCACCGCGCTC | 57.193 | 55.556 | 5.56 | 0.00 | 0.00 | 5.03 |
4031 | 4047 | 1.141019 | TGAAGTATCACCGCGCTCC | 59.859 | 57.895 | 5.56 | 0.00 | 0.00 | 4.70 |
4032 | 4048 | 1.320344 | TGAAGTATCACCGCGCTCCT | 61.320 | 55.000 | 5.56 | 0.00 | 0.00 | 3.69 |
4033 | 4049 | 0.666913 | GAAGTATCACCGCGCTCCTA | 59.333 | 55.000 | 5.56 | 0.00 | 0.00 | 2.94 |
4034 | 4050 | 0.669077 | AAGTATCACCGCGCTCCTAG | 59.331 | 55.000 | 5.56 | 0.00 | 0.00 | 3.02 |
4035 | 4051 | 1.371881 | GTATCACCGCGCTCCTAGC | 60.372 | 63.158 | 5.56 | 0.00 | 38.02 | 3.42 |
4036 | 4052 | 1.826487 | TATCACCGCGCTCCTAGCA | 60.826 | 57.895 | 5.56 | 0.00 | 42.58 | 3.49 |
4037 | 4053 | 2.071844 | TATCACCGCGCTCCTAGCAC | 62.072 | 60.000 | 5.56 | 0.00 | 42.58 | 4.40 |
4042 | 4058 | 4.143333 | GCGCTCCTAGCACCCGAA | 62.143 | 66.667 | 0.00 | 0.00 | 42.58 | 4.30 |
4043 | 4059 | 2.105128 | CGCTCCTAGCACCCGAAG | 59.895 | 66.667 | 0.00 | 0.00 | 42.58 | 3.79 |
4044 | 4060 | 2.202946 | GCTCCTAGCACCCGAAGC | 60.203 | 66.667 | 0.00 | 0.00 | 41.89 | 3.86 |
4045 | 4061 | 2.105128 | CTCCTAGCACCCGAAGCG | 59.895 | 66.667 | 0.00 | 0.00 | 37.01 | 4.68 |
4046 | 4062 | 2.678934 | TCCTAGCACCCGAAGCGT | 60.679 | 61.111 | 0.00 | 0.00 | 37.01 | 5.07 |
4047 | 4063 | 2.202756 | CCTAGCACCCGAAGCGTC | 60.203 | 66.667 | 0.00 | 0.00 | 37.01 | 5.19 |
4049 | 4065 | 4.789075 | TAGCACCCGAAGCGTCGC | 62.789 | 66.667 | 16.96 | 9.80 | 46.28 | 5.19 |
4052 | 4068 | 2.202690 | CACCCGAAGCGTCGCATA | 60.203 | 61.111 | 21.09 | 0.00 | 46.28 | 3.14 |
4053 | 4069 | 2.202703 | ACCCGAAGCGTCGCATAC | 60.203 | 61.111 | 21.09 | 8.97 | 46.28 | 2.39 |
4054 | 4070 | 2.202690 | CCCGAAGCGTCGCATACA | 60.203 | 61.111 | 21.09 | 0.00 | 46.28 | 2.29 |
4055 | 4071 | 2.230940 | CCCGAAGCGTCGCATACAG | 61.231 | 63.158 | 21.09 | 5.66 | 46.28 | 2.74 |
4056 | 4072 | 1.226575 | CCGAAGCGTCGCATACAGA | 60.227 | 57.895 | 21.09 | 0.00 | 46.28 | 3.41 |
4057 | 4073 | 1.202973 | CCGAAGCGTCGCATACAGAG | 61.203 | 60.000 | 21.09 | 3.15 | 46.28 | 3.35 |
4058 | 4074 | 1.802300 | CGAAGCGTCGCATACAGAGC | 61.802 | 60.000 | 21.09 | 0.00 | 41.08 | 4.09 |
4059 | 4075 | 0.802222 | GAAGCGTCGCATACAGAGCA | 60.802 | 55.000 | 21.09 | 0.00 | 0.00 | 4.26 |
4060 | 4076 | 0.389817 | AAGCGTCGCATACAGAGCAA | 60.390 | 50.000 | 21.09 | 0.00 | 0.00 | 3.91 |
4061 | 4077 | 1.078759 | AGCGTCGCATACAGAGCAAC | 61.079 | 55.000 | 21.09 | 0.00 | 0.00 | 4.17 |
4062 | 4078 | 1.351430 | GCGTCGCATACAGAGCAACA | 61.351 | 55.000 | 13.44 | 0.00 | 0.00 | 3.33 |
4063 | 4079 | 0.366871 | CGTCGCATACAGAGCAACAC | 59.633 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4064 | 4080 | 0.721718 | GTCGCATACAGAGCAACACC | 59.278 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4065 | 4081 | 0.608130 | TCGCATACAGAGCAACACCT | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4066 | 4082 | 1.001974 | TCGCATACAGAGCAACACCTT | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
4067 | 4083 | 1.394917 | CGCATACAGAGCAACACCTTC | 59.605 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
4068 | 4084 | 2.426522 | GCATACAGAGCAACACCTTCA | 58.573 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
4069 | 4085 | 2.813754 | GCATACAGAGCAACACCTTCAA | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
4070 | 4086 | 3.120060 | GCATACAGAGCAACACCTTCAAG | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
4071 | 4087 | 4.318332 | CATACAGAGCAACACCTTCAAGA | 58.682 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
4072 | 4088 | 3.281727 | ACAGAGCAACACCTTCAAGAA | 57.718 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
4073 | 4089 | 3.209410 | ACAGAGCAACACCTTCAAGAAG | 58.791 | 45.455 | 2.83 | 2.83 | 38.14 | 2.85 |
4083 | 4099 | 2.795121 | CTTCAAGAAGGAATGCGACG | 57.205 | 50.000 | 1.86 | 0.00 | 34.87 | 5.12 |
4084 | 4100 | 2.337583 | CTTCAAGAAGGAATGCGACGA | 58.662 | 47.619 | 0.00 | 0.00 | 34.87 | 4.20 |
4085 | 4101 | 1.710013 | TCAAGAAGGAATGCGACGAC | 58.290 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4086 | 4102 | 0.366871 | CAAGAAGGAATGCGACGACG | 59.633 | 55.000 | 2.12 | 2.12 | 42.93 | 5.12 |
4087 | 4103 | 0.242825 | AAGAAGGAATGCGACGACGA | 59.757 | 50.000 | 12.29 | 0.00 | 42.66 | 4.20 |
4088 | 4104 | 0.456312 | AGAAGGAATGCGACGACGAC | 60.456 | 55.000 | 12.29 | 3.11 | 42.66 | 4.34 |
4089 | 4105 | 1.730593 | GAAGGAATGCGACGACGACG | 61.731 | 60.000 | 15.13 | 15.13 | 42.66 | 5.12 |
4097 | 4113 | 4.702081 | GACGACGACGCCACTGCT | 62.702 | 66.667 | 7.30 | 0.00 | 43.96 | 4.24 |
4107 | 4123 | 4.641645 | CCACTGCTGCCCGGACAA | 62.642 | 66.667 | 0.73 | 0.00 | 0.00 | 3.18 |
4108 | 4124 | 3.052082 | CACTGCTGCCCGGACAAG | 61.052 | 66.667 | 0.73 | 0.00 | 0.00 | 3.16 |
4109 | 4125 | 3.560251 | ACTGCTGCCCGGACAAGT | 61.560 | 61.111 | 0.73 | 0.00 | 0.00 | 3.16 |
4110 | 4126 | 2.743928 | CTGCTGCCCGGACAAGTC | 60.744 | 66.667 | 0.73 | 0.00 | 0.00 | 3.01 |
4111 | 4127 | 4.329545 | TGCTGCCCGGACAAGTCC | 62.330 | 66.667 | 0.73 | 9.22 | 46.18 | 3.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 4.263905 | TGCCTATCTCAACAAAATGGACCT | 60.264 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
63 | 64 | 6.428083 | TCAAGTACTGATTGGACTTTACCA | 57.572 | 37.500 | 0.00 | 0.00 | 38.24 | 3.25 |
70 | 71 | 7.923414 | ATAAAACCTCAAGTACTGATTGGAC | 57.077 | 36.000 | 0.00 | 0.00 | 32.14 | 4.02 |
150 | 151 | 8.480501 | ACTTAGGCGTATAAAAAGTATCTTCCA | 58.519 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
153 | 154 | 9.880157 | TTGACTTAGGCGTATAAAAAGTATCTT | 57.120 | 29.630 | 0.00 | 0.00 | 30.83 | 2.40 |
193 | 194 | 3.374058 | GCGCTACAAGTGGTACAAATGAT | 59.626 | 43.478 | 0.00 | 0.00 | 44.16 | 2.45 |
197 | 198 | 1.868498 | GTGCGCTACAAGTGGTACAAA | 59.132 | 47.619 | 9.73 | 0.00 | 44.16 | 2.83 |
213 | 214 | 6.726035 | TTTCTCGAACAAATTTTTAGTGCG | 57.274 | 33.333 | 1.94 | 1.94 | 35.66 | 5.34 |
258 | 259 | 4.487714 | TGCACTTATCCCTCTGGTTTAG | 57.512 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
302 | 303 | 0.395312 | TGTCGGGGGAGAACAAGAAC | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
443 | 445 | 3.691118 | GTGTCATTAAGCAGGCTTCATGA | 59.309 | 43.478 | 20.96 | 20.96 | 41.52 | 3.07 |
446 | 448 | 3.423539 | AGTGTCATTAAGCAGGCTTCA | 57.576 | 42.857 | 10.21 | 0.00 | 37.47 | 3.02 |
636 | 638 | 9.252962 | CATAGAGTTGACAAGCAAAAAGAAAAT | 57.747 | 29.630 | 0.00 | 0.00 | 38.44 | 1.82 |
661 | 663 | 6.740944 | ACATACTACCATAATGGCTACACA | 57.259 | 37.500 | 0.00 | 0.00 | 42.67 | 3.72 |
802 | 807 | 6.761714 | GGCGTATCAGATCTTTCTCCTTTTTA | 59.238 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
945 | 952 | 4.473196 | TGAGGTGTCTTGGCAATTAGGATA | 59.527 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1027 | 1034 | 2.264480 | CACAACCTGGATCGCCGA | 59.736 | 61.111 | 0.00 | 0.00 | 36.79 | 5.54 |
1115 | 1122 | 1.792757 | ATTGTGGAGCTGGAGGGCAA | 61.793 | 55.000 | 0.00 | 0.00 | 34.17 | 4.52 |
1132 | 1139 | 2.604382 | GGGGTTGGCCACAGCATT | 60.604 | 61.111 | 3.88 | 0.00 | 42.56 | 3.56 |
1144 | 1151 | 1.305886 | GGTAAATCCTCCTGGGGGTT | 58.694 | 55.000 | 13.53 | 0.17 | 35.33 | 4.11 |
1161 | 1168 | 2.142292 | GAAGATGCAGGGGTGTGGGT | 62.142 | 60.000 | 0.00 | 0.00 | 0.00 | 4.51 |
1200 | 1207 | 4.679373 | ATATTCGAGTGCATCTTCCACT | 57.321 | 40.909 | 0.00 | 0.00 | 45.61 | 4.00 |
1302 | 1309 | 9.352191 | GTGTAGGACCTAGTTCTAATGAGATTA | 57.648 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1323 | 1330 | 9.404348 | CTATATCAAACATAGTCTGCTGTGTAG | 57.596 | 37.037 | 0.00 | 0.00 | 44.56 | 2.74 |
1945 | 1956 | 0.511221 | GCTCGCAAGCTTACGAACAA | 59.489 | 50.000 | 21.43 | 0.85 | 45.55 | 2.83 |
2197 | 2211 | 5.045578 | ACTGCAGAAGGTCAACATAGGTTAT | 60.046 | 40.000 | 23.35 | 0.00 | 34.87 | 1.89 |
2276 | 2290 | 8.517323 | AAATATGATAACCCTTCTCCTCATCT | 57.483 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2416 | 2430 | 1.660607 | CATGAGTTCGGTGTTCCATCG | 59.339 | 52.381 | 0.00 | 0.00 | 39.56 | 3.84 |
2739 | 2753 | 2.906389 | TGAGCATCTGGACTACCACTTT | 59.094 | 45.455 | 0.00 | 0.00 | 41.77 | 2.66 |
2797 | 2811 | 0.463833 | CAAGGCTGTCGTAATCCCCC | 60.464 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
2800 | 2814 | 1.473434 | CCCTCAAGGCTGTCGTAATCC | 60.473 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
2808 | 2822 | 2.031870 | GTTCAAAACCCTCAAGGCTGT | 58.968 | 47.619 | 0.00 | 0.00 | 40.58 | 4.40 |
2810 | 2824 | 2.430694 | GTTGTTCAAAACCCTCAAGGCT | 59.569 | 45.455 | 0.00 | 0.00 | 40.58 | 4.58 |
3077 | 3092 | 7.981789 | TCTTGAGTCGCTAAACATATCAGAAAT | 59.018 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3185 | 3200 | 9.936759 | TTGTGGATGCTGTTCGATTTATATATA | 57.063 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
3368 | 3384 | 6.971756 | CACAGAACATATTTTCACACACACAA | 59.028 | 34.615 | 4.50 | 0.00 | 0.00 | 3.33 |
3377 | 3393 | 5.301555 | TCGACCACACAGAACATATTTTCA | 58.698 | 37.500 | 4.50 | 0.00 | 0.00 | 2.69 |
3378 | 3394 | 5.856126 | TCGACCACACAGAACATATTTTC | 57.144 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
3381 | 3397 | 5.084818 | TGATCGACCACACAGAACATATT | 57.915 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
3385 | 3401 | 2.869801 | GTTTGATCGACCACACAGAACA | 59.130 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3386 | 3402 | 2.869801 | TGTTTGATCGACCACACAGAAC | 59.130 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3387 | 3403 | 3.186702 | TGTTTGATCGACCACACAGAA | 57.813 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
3478 | 3494 | 5.183140 | ACACATTGGTCCTACAGCAAATAAC | 59.817 | 40.000 | 0.00 | 0.00 | 45.53 | 1.89 |
3496 | 3512 | 5.710984 | CGAGGACACTACTTTAGACACATT | 58.289 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
3508 | 3524 | 2.531206 | GTTCATCTGCGAGGACACTAC | 58.469 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
3784 | 3800 | 7.386299 | TGCCACATTTATTTCCATAACAACAAC | 59.614 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
3787 | 3803 | 6.312672 | GGTGCCACATTTATTTCCATAACAAC | 59.687 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
3814 | 3830 | 2.203337 | GTGCAGCACCAGGTTGGA | 60.203 | 61.111 | 15.27 | 0.00 | 40.96 | 3.53 |
3827 | 3843 | 1.451927 | GGGCAGATCCAATCGTGCA | 60.452 | 57.895 | 4.94 | 0.00 | 36.10 | 4.57 |
3834 | 3850 | 4.721776 | AGTACAGATTAAGGGCAGATCCAA | 59.278 | 41.667 | 0.00 | 0.00 | 36.21 | 3.53 |
3863 | 3879 | 6.016192 | GCACAGGCAGTCTACTAGTGAATATA | 60.016 | 42.308 | 5.39 | 0.00 | 40.72 | 0.86 |
3865 | 3881 | 4.098044 | GCACAGGCAGTCTACTAGTGAATA | 59.902 | 45.833 | 5.39 | 0.00 | 40.72 | 1.75 |
3871 | 3887 | 0.811915 | ACGCACAGGCAGTCTACTAG | 59.188 | 55.000 | 0.00 | 0.00 | 41.24 | 2.57 |
3872 | 3888 | 1.067846 | CAACGCACAGGCAGTCTACTA | 60.068 | 52.381 | 0.00 | 0.00 | 41.24 | 1.82 |
3873 | 3889 | 0.319900 | CAACGCACAGGCAGTCTACT | 60.320 | 55.000 | 0.00 | 0.00 | 41.24 | 2.57 |
3874 | 3890 | 1.901650 | GCAACGCACAGGCAGTCTAC | 61.902 | 60.000 | 0.00 | 0.00 | 41.24 | 2.59 |
3875 | 3891 | 1.667830 | GCAACGCACAGGCAGTCTA | 60.668 | 57.895 | 0.00 | 0.00 | 41.24 | 2.59 |
3876 | 3892 | 2.974698 | GCAACGCACAGGCAGTCT | 60.975 | 61.111 | 0.00 | 0.00 | 41.24 | 3.24 |
3877 | 3893 | 2.833533 | TTGCAACGCACAGGCAGTC | 61.834 | 57.895 | 0.00 | 0.00 | 38.71 | 3.51 |
3878 | 3894 | 2.828095 | TTGCAACGCACAGGCAGT | 60.828 | 55.556 | 0.00 | 0.00 | 38.71 | 4.40 |
3879 | 3895 | 2.353839 | GTTGCAACGCACAGGCAG | 60.354 | 61.111 | 14.90 | 0.00 | 38.71 | 4.85 |
3880 | 3896 | 4.249020 | CGTTGCAACGCACAGGCA | 62.249 | 61.111 | 35.89 | 0.00 | 46.06 | 4.75 |
3889 | 3905 | 1.646189 | TTTCAAAAGCCCGTTGCAAC | 58.354 | 45.000 | 19.89 | 19.89 | 44.83 | 4.17 |
3890 | 3906 | 2.386661 | TTTTCAAAAGCCCGTTGCAA | 57.613 | 40.000 | 0.00 | 0.00 | 44.83 | 4.08 |
3891 | 3907 | 2.611225 | ATTTTCAAAAGCCCGTTGCA | 57.389 | 40.000 | 0.00 | 0.00 | 44.83 | 4.08 |
3892 | 3908 | 3.064682 | ACAAATTTTCAAAAGCCCGTTGC | 59.935 | 39.130 | 0.00 | 0.00 | 41.71 | 4.17 |
3893 | 3909 | 4.873768 | ACAAATTTTCAAAAGCCCGTTG | 57.126 | 36.364 | 0.00 | 0.00 | 0.00 | 4.10 |
3894 | 3910 | 7.066404 | ACAAATACAAATTTTCAAAAGCCCGTT | 59.934 | 29.630 | 0.00 | 0.00 | 32.87 | 4.44 |
3895 | 3911 | 6.540551 | ACAAATACAAATTTTCAAAAGCCCGT | 59.459 | 30.769 | 0.00 | 0.00 | 32.87 | 5.28 |
3896 | 3912 | 6.953843 | ACAAATACAAATTTTCAAAAGCCCG | 58.046 | 32.000 | 0.00 | 0.00 | 32.87 | 6.13 |
3897 | 3913 | 7.167302 | GCAACAAATACAAATTTTCAAAAGCCC | 59.833 | 33.333 | 0.00 | 0.00 | 32.87 | 5.19 |
3898 | 3914 | 7.699812 | TGCAACAAATACAAATTTTCAAAAGCC | 59.300 | 29.630 | 0.00 | 0.00 | 32.87 | 4.35 |
3899 | 3915 | 8.612233 | TGCAACAAATACAAATTTTCAAAAGC | 57.388 | 26.923 | 0.00 | 0.00 | 32.87 | 3.51 |
3902 | 3918 | 9.713740 | GACATGCAACAAATACAAATTTTCAAA | 57.286 | 25.926 | 0.00 | 0.00 | 32.87 | 2.69 |
3903 | 3919 | 8.886719 | TGACATGCAACAAATACAAATTTTCAA | 58.113 | 25.926 | 0.00 | 0.00 | 32.87 | 2.69 |
3904 | 3920 | 8.429493 | TGACATGCAACAAATACAAATTTTCA | 57.571 | 26.923 | 0.00 | 0.00 | 32.87 | 2.69 |
3905 | 3921 | 9.713740 | TTTGACATGCAACAAATACAAATTTTC | 57.286 | 25.926 | 11.21 | 0.00 | 35.91 | 2.29 |
3906 | 3922 | 9.500864 | GTTTGACATGCAACAAATACAAATTTT | 57.499 | 25.926 | 15.99 | 0.00 | 38.09 | 1.82 |
3907 | 3923 | 7.850003 | CGTTTGACATGCAACAAATACAAATTT | 59.150 | 29.630 | 15.99 | 0.00 | 38.09 | 1.82 |
3908 | 3924 | 7.223582 | TCGTTTGACATGCAACAAATACAAATT | 59.776 | 29.630 | 15.99 | 0.00 | 38.09 | 1.82 |
3909 | 3925 | 6.699204 | TCGTTTGACATGCAACAAATACAAAT | 59.301 | 30.769 | 15.99 | 0.00 | 38.09 | 2.32 |
3910 | 3926 | 6.036470 | TCGTTTGACATGCAACAAATACAAA | 58.964 | 32.000 | 15.99 | 8.54 | 38.09 | 2.83 |
3911 | 3927 | 5.582550 | TCGTTTGACATGCAACAAATACAA | 58.417 | 33.333 | 15.99 | 3.97 | 38.09 | 2.41 |
3912 | 3928 | 5.175090 | TCGTTTGACATGCAACAAATACA | 57.825 | 34.783 | 15.99 | 5.28 | 38.09 | 2.29 |
3913 | 3929 | 6.416455 | TCTTTCGTTTGACATGCAACAAATAC | 59.584 | 34.615 | 15.99 | 7.80 | 38.09 | 1.89 |
3914 | 3930 | 6.499172 | TCTTTCGTTTGACATGCAACAAATA | 58.501 | 32.000 | 15.99 | 8.37 | 38.09 | 1.40 |
3915 | 3931 | 5.347342 | TCTTTCGTTTGACATGCAACAAAT | 58.653 | 33.333 | 15.99 | 0.00 | 38.09 | 2.32 |
3916 | 3932 | 4.738124 | TCTTTCGTTTGACATGCAACAAA | 58.262 | 34.783 | 11.21 | 11.21 | 35.91 | 2.83 |
3917 | 3933 | 4.362932 | TCTTTCGTTTGACATGCAACAA | 57.637 | 36.364 | 0.00 | 0.00 | 35.91 | 2.83 |
3918 | 3934 | 4.566545 | ATCTTTCGTTTGACATGCAACA | 57.433 | 36.364 | 0.00 | 0.00 | 35.91 | 3.33 |
3919 | 3935 | 8.667987 | TTATTATCTTTCGTTTGACATGCAAC | 57.332 | 30.769 | 0.00 | 0.00 | 35.91 | 4.17 |
3920 | 3936 | 9.853555 | AATTATTATCTTTCGTTTGACATGCAA | 57.146 | 25.926 | 0.00 | 0.00 | 33.88 | 4.08 |
3921 | 3937 | 9.288124 | CAATTATTATCTTTCGTTTGACATGCA | 57.712 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
3922 | 3938 | 8.745837 | CCAATTATTATCTTTCGTTTGACATGC | 58.254 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
3923 | 3939 | 8.745837 | GCCAATTATTATCTTTCGTTTGACATG | 58.254 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
3924 | 3940 | 8.465999 | TGCCAATTATTATCTTTCGTTTGACAT | 58.534 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
3925 | 3941 | 7.821652 | TGCCAATTATTATCTTTCGTTTGACA | 58.178 | 30.769 | 0.00 | 0.00 | 0.00 | 3.58 |
3926 | 3942 | 8.583765 | GTTGCCAATTATTATCTTTCGTTTGAC | 58.416 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3927 | 3943 | 8.300286 | TGTTGCCAATTATTATCTTTCGTTTGA | 58.700 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3928 | 3944 | 8.459521 | TGTTGCCAATTATTATCTTTCGTTTG | 57.540 | 30.769 | 0.00 | 0.00 | 0.00 | 2.93 |
3929 | 3945 | 9.482627 | TTTGTTGCCAATTATTATCTTTCGTTT | 57.517 | 25.926 | 0.00 | 0.00 | 0.00 | 3.60 |
3930 | 3946 | 9.651913 | ATTTGTTGCCAATTATTATCTTTCGTT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 3.85 |
3931 | 3947 | 9.086336 | CATTTGTTGCCAATTATTATCTTTCGT | 57.914 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
3932 | 3948 | 8.057742 | GCATTTGTTGCCAATTATTATCTTTCG | 58.942 | 33.333 | 0.00 | 0.00 | 46.15 | 3.46 |
3949 | 3965 | 0.667993 | ACCAGTGTCGGCATTTGTTG | 59.332 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3950 | 3966 | 2.151202 | CTACCAGTGTCGGCATTTGTT | 58.849 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3951 | 3967 | 1.346395 | TCTACCAGTGTCGGCATTTGT | 59.654 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3952 | 3968 | 2.093306 | TCTACCAGTGTCGGCATTTG | 57.907 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3953 | 3969 | 2.236146 | TGATCTACCAGTGTCGGCATTT | 59.764 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
3954 | 3970 | 1.831106 | TGATCTACCAGTGTCGGCATT | 59.169 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
3955 | 3971 | 1.485124 | TGATCTACCAGTGTCGGCAT | 58.515 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3956 | 3972 | 1.067142 | GTTGATCTACCAGTGTCGGCA | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
3957 | 3973 | 1.641577 | GTTGATCTACCAGTGTCGGC | 58.358 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
3958 | 3974 | 1.471287 | TCGTTGATCTACCAGTGTCGG | 59.529 | 52.381 | 1.57 | 0.00 | 0.00 | 4.79 |
3959 | 3975 | 2.913777 | TCGTTGATCTACCAGTGTCG | 57.086 | 50.000 | 1.57 | 0.00 | 0.00 | 4.35 |
3960 | 3976 | 4.304110 | TGTTTCGTTGATCTACCAGTGTC | 58.696 | 43.478 | 1.57 | 0.00 | 0.00 | 3.67 |
3961 | 3977 | 4.330944 | TGTTTCGTTGATCTACCAGTGT | 57.669 | 40.909 | 1.57 | 0.00 | 0.00 | 3.55 |
3962 | 3978 | 5.465390 | TCTTTGTTTCGTTGATCTACCAGTG | 59.535 | 40.000 | 1.57 | 0.00 | 0.00 | 3.66 |
3963 | 3979 | 5.607477 | TCTTTGTTTCGTTGATCTACCAGT | 58.393 | 37.500 | 1.57 | 0.00 | 0.00 | 4.00 |
3964 | 3980 | 6.368791 | TCATCTTTGTTTCGTTGATCTACCAG | 59.631 | 38.462 | 1.57 | 0.00 | 0.00 | 4.00 |
3965 | 3981 | 6.147164 | GTCATCTTTGTTTCGTTGATCTACCA | 59.853 | 38.462 | 1.57 | 0.00 | 0.00 | 3.25 |
3966 | 3982 | 6.402226 | GGTCATCTTTGTTTCGTTGATCTACC | 60.402 | 42.308 | 1.57 | 0.00 | 0.00 | 3.18 |
3967 | 3983 | 6.147164 | TGGTCATCTTTGTTTCGTTGATCTAC | 59.853 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
3968 | 3984 | 6.227522 | TGGTCATCTTTGTTTCGTTGATCTA | 58.772 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3969 | 3985 | 5.063204 | TGGTCATCTTTGTTTCGTTGATCT | 58.937 | 37.500 | 0.00 | 0.00 | 0.00 | 2.75 |
3970 | 3986 | 5.049405 | ACTGGTCATCTTTGTTTCGTTGATC | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3971 | 3987 | 4.821805 | ACTGGTCATCTTTGTTTCGTTGAT | 59.178 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3972 | 3988 | 4.196193 | ACTGGTCATCTTTGTTTCGTTGA | 58.804 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
3973 | 3989 | 4.552166 | ACTGGTCATCTTTGTTTCGTTG | 57.448 | 40.909 | 0.00 | 0.00 | 0.00 | 4.10 |
3974 | 3990 | 5.008316 | GGTTACTGGTCATCTTTGTTTCGTT | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3975 | 3991 | 4.514066 | GGTTACTGGTCATCTTTGTTTCGT | 59.486 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3976 | 3992 | 4.377022 | CGGTTACTGGTCATCTTTGTTTCG | 60.377 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
3977 | 3993 | 4.612939 | GCGGTTACTGGTCATCTTTGTTTC | 60.613 | 45.833 | 0.00 | 0.00 | 0.00 | 2.78 |
3978 | 3994 | 3.252458 | GCGGTTACTGGTCATCTTTGTTT | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
3979 | 3995 | 2.812011 | GCGGTTACTGGTCATCTTTGTT | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3980 | 3996 | 2.038557 | AGCGGTTACTGGTCATCTTTGT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3981 | 3997 | 2.416547 | CAGCGGTTACTGGTCATCTTTG | 59.583 | 50.000 | 0.00 | 0.00 | 33.85 | 2.77 |
3982 | 3998 | 2.699954 | CAGCGGTTACTGGTCATCTTT | 58.300 | 47.619 | 0.00 | 0.00 | 33.85 | 2.52 |
3983 | 3999 | 1.676014 | GCAGCGGTTACTGGTCATCTT | 60.676 | 52.381 | 0.00 | 0.00 | 38.16 | 2.40 |
3984 | 4000 | 0.108138 | GCAGCGGTTACTGGTCATCT | 60.108 | 55.000 | 0.00 | 0.00 | 38.16 | 2.90 |
3985 | 4001 | 0.391130 | TGCAGCGGTTACTGGTCATC | 60.391 | 55.000 | 0.00 | 0.00 | 38.16 | 2.92 |
3986 | 4002 | 0.673644 | GTGCAGCGGTTACTGGTCAT | 60.674 | 55.000 | 0.00 | 0.00 | 38.16 | 3.06 |
3987 | 4003 | 1.301401 | GTGCAGCGGTTACTGGTCA | 60.301 | 57.895 | 0.00 | 0.00 | 38.16 | 4.02 |
3988 | 4004 | 2.033194 | GGTGCAGCGGTTACTGGTC | 61.033 | 63.158 | 0.00 | 0.00 | 38.16 | 4.02 |
3989 | 4005 | 2.032071 | GGTGCAGCGGTTACTGGT | 59.968 | 61.111 | 0.00 | 0.00 | 38.16 | 4.00 |
3990 | 4006 | 3.118454 | CGGTGCAGCGGTTACTGG | 61.118 | 66.667 | 29.65 | 0.00 | 38.16 | 4.00 |
3991 | 4007 | 2.357034 | ACGGTGCAGCGGTTACTG | 60.357 | 61.111 | 37.73 | 12.80 | 40.80 | 2.74 |
3992 | 4008 | 2.048503 | GACGGTGCAGCGGTTACT | 60.049 | 61.111 | 37.73 | 19.94 | 0.00 | 2.24 |
3993 | 4009 | 3.116531 | GGACGGTGCAGCGGTTAC | 61.117 | 66.667 | 37.73 | 25.04 | 0.00 | 2.50 |
3994 | 4010 | 4.728102 | CGGACGGTGCAGCGGTTA | 62.728 | 66.667 | 37.73 | 0.00 | 0.00 | 2.85 |
4005 | 4021 | 3.340727 | GTGATACTTCACCGGACGG | 57.659 | 57.895 | 9.46 | 9.56 | 45.45 | 4.79 |
4013 | 4029 | 1.141019 | GGAGCGCGGTGATACTTCA | 59.859 | 57.895 | 18.92 | 0.00 | 0.00 | 3.02 |
4014 | 4030 | 0.666913 | TAGGAGCGCGGTGATACTTC | 59.333 | 55.000 | 18.92 | 0.00 | 0.00 | 3.01 |
4015 | 4031 | 0.669077 | CTAGGAGCGCGGTGATACTT | 59.331 | 55.000 | 18.92 | 0.00 | 0.00 | 2.24 |
4016 | 4032 | 1.797211 | GCTAGGAGCGCGGTGATACT | 61.797 | 60.000 | 18.92 | 11.05 | 0.00 | 2.12 |
4017 | 4033 | 1.371881 | GCTAGGAGCGCGGTGATAC | 60.372 | 63.158 | 18.92 | 0.00 | 0.00 | 2.24 |
4018 | 4034 | 1.826487 | TGCTAGGAGCGCGGTGATA | 60.826 | 57.895 | 18.92 | 7.26 | 46.26 | 2.15 |
4019 | 4035 | 3.147595 | TGCTAGGAGCGCGGTGAT | 61.148 | 61.111 | 18.92 | 6.27 | 46.26 | 3.06 |
4020 | 4036 | 4.129737 | GTGCTAGGAGCGCGGTGA | 62.130 | 66.667 | 18.92 | 0.00 | 46.26 | 4.02 |
4026 | 4042 | 2.105128 | CTTCGGGTGCTAGGAGCG | 59.895 | 66.667 | 7.39 | 3.45 | 46.26 | 5.03 |
4027 | 4043 | 2.202946 | GCTTCGGGTGCTAGGAGC | 60.203 | 66.667 | 4.65 | 4.65 | 42.82 | 4.70 |
4028 | 4044 | 2.105128 | CGCTTCGGGTGCTAGGAG | 59.895 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
4029 | 4045 | 2.678934 | ACGCTTCGGGTGCTAGGA | 60.679 | 61.111 | 0.00 | 0.00 | 0.00 | 2.94 |
4030 | 4046 | 2.202756 | GACGCTTCGGGTGCTAGG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
4031 | 4047 | 2.579787 | CGACGCTTCGGGTGCTAG | 60.580 | 66.667 | 4.41 | 0.00 | 41.89 | 3.42 |
4032 | 4048 | 4.789075 | GCGACGCTTCGGGTGCTA | 62.789 | 66.667 | 13.73 | 0.00 | 45.98 | 3.49 |
4035 | 4051 | 2.202690 | TATGCGACGCTTCGGGTG | 60.203 | 61.111 | 22.08 | 0.00 | 45.98 | 4.61 |
4036 | 4052 | 2.202703 | GTATGCGACGCTTCGGGT | 60.203 | 61.111 | 22.08 | 2.85 | 45.98 | 5.28 |
4037 | 4053 | 2.202690 | TGTATGCGACGCTTCGGG | 60.203 | 61.111 | 22.08 | 0.00 | 45.98 | 5.14 |
4038 | 4054 | 1.202973 | CTCTGTATGCGACGCTTCGG | 61.203 | 60.000 | 22.08 | 15.08 | 45.98 | 4.30 |
4040 | 4056 | 0.802222 | TGCTCTGTATGCGACGCTTC | 60.802 | 55.000 | 22.08 | 11.41 | 0.00 | 3.86 |
4041 | 4057 | 0.389817 | TTGCTCTGTATGCGACGCTT | 60.390 | 50.000 | 22.08 | 17.38 | 0.00 | 4.68 |
4042 | 4058 | 1.078759 | GTTGCTCTGTATGCGACGCT | 61.079 | 55.000 | 22.08 | 9.12 | 35.46 | 5.07 |
4043 | 4059 | 1.345176 | GTTGCTCTGTATGCGACGC | 59.655 | 57.895 | 14.19 | 14.19 | 35.46 | 5.19 |
4044 | 4060 | 0.366871 | GTGTTGCTCTGTATGCGACG | 59.633 | 55.000 | 0.00 | 0.00 | 45.18 | 5.12 |
4045 | 4061 | 0.721718 | GGTGTTGCTCTGTATGCGAC | 59.278 | 55.000 | 0.00 | 0.00 | 43.20 | 5.19 |
4046 | 4062 | 0.608130 | AGGTGTTGCTCTGTATGCGA | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
4047 | 4063 | 1.394917 | GAAGGTGTTGCTCTGTATGCG | 59.605 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
4048 | 4064 | 2.426522 | TGAAGGTGTTGCTCTGTATGC | 58.573 | 47.619 | 0.00 | 0.00 | 0.00 | 3.14 |
4049 | 4065 | 4.318332 | TCTTGAAGGTGTTGCTCTGTATG | 58.682 | 43.478 | 0.00 | 0.00 | 0.00 | 2.39 |
4050 | 4066 | 4.623932 | TCTTGAAGGTGTTGCTCTGTAT | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
4051 | 4067 | 4.380531 | CTTCTTGAAGGTGTTGCTCTGTA | 58.619 | 43.478 | 2.63 | 0.00 | 0.00 | 2.74 |
4052 | 4068 | 3.209410 | CTTCTTGAAGGTGTTGCTCTGT | 58.791 | 45.455 | 2.63 | 0.00 | 0.00 | 3.41 |
4053 | 4069 | 2.551459 | CCTTCTTGAAGGTGTTGCTCTG | 59.449 | 50.000 | 18.52 | 0.00 | 35.22 | 3.35 |
4054 | 4070 | 2.439507 | TCCTTCTTGAAGGTGTTGCTCT | 59.560 | 45.455 | 23.78 | 0.00 | 40.81 | 4.09 |
4055 | 4071 | 2.851195 | TCCTTCTTGAAGGTGTTGCTC | 58.149 | 47.619 | 23.78 | 0.00 | 40.81 | 4.26 |
4056 | 4072 | 3.297134 | TTCCTTCTTGAAGGTGTTGCT | 57.703 | 42.857 | 23.78 | 0.00 | 40.81 | 3.91 |
4057 | 4073 | 3.858503 | GCATTCCTTCTTGAAGGTGTTGC | 60.859 | 47.826 | 23.78 | 23.54 | 40.81 | 4.17 |
4058 | 4074 | 3.610114 | CGCATTCCTTCTTGAAGGTGTTG | 60.610 | 47.826 | 23.78 | 19.69 | 40.81 | 3.33 |
4059 | 4075 | 2.554032 | CGCATTCCTTCTTGAAGGTGTT | 59.446 | 45.455 | 23.78 | 10.91 | 40.81 | 3.32 |
4060 | 4076 | 2.154462 | CGCATTCCTTCTTGAAGGTGT | 58.846 | 47.619 | 23.78 | 13.74 | 40.81 | 4.16 |
4061 | 4077 | 2.160417 | GTCGCATTCCTTCTTGAAGGTG | 59.840 | 50.000 | 23.78 | 18.02 | 40.81 | 4.00 |
4062 | 4078 | 2.427506 | GTCGCATTCCTTCTTGAAGGT | 58.572 | 47.619 | 23.78 | 7.77 | 40.81 | 3.50 |
4063 | 4079 | 1.394917 | CGTCGCATTCCTTCTTGAAGG | 59.605 | 52.381 | 20.21 | 20.21 | 41.35 | 3.46 |
4064 | 4080 | 2.092838 | GTCGTCGCATTCCTTCTTGAAG | 59.907 | 50.000 | 3.55 | 3.55 | 0.00 | 3.02 |
4065 | 4081 | 2.066262 | GTCGTCGCATTCCTTCTTGAA | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
4066 | 4082 | 1.710013 | GTCGTCGCATTCCTTCTTGA | 58.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4067 | 4083 | 0.366871 | CGTCGTCGCATTCCTTCTTG | 59.633 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4068 | 4084 | 0.242825 | TCGTCGTCGCATTCCTTCTT | 59.757 | 50.000 | 0.00 | 0.00 | 36.96 | 2.52 |
4069 | 4085 | 0.456312 | GTCGTCGTCGCATTCCTTCT | 60.456 | 55.000 | 0.00 | 0.00 | 36.96 | 2.85 |
4070 | 4086 | 1.730593 | CGTCGTCGTCGCATTCCTTC | 61.731 | 60.000 | 0.00 | 0.00 | 36.96 | 3.46 |
4071 | 4087 | 1.800315 | CGTCGTCGTCGCATTCCTT | 60.800 | 57.895 | 0.00 | 0.00 | 36.96 | 3.36 |
4072 | 4088 | 2.202440 | CGTCGTCGTCGCATTCCT | 60.202 | 61.111 | 0.00 | 0.00 | 36.96 | 3.36 |
4090 | 4106 | 4.641645 | TTGTCCGGGCAGCAGTGG | 62.642 | 66.667 | 9.61 | 0.00 | 0.00 | 4.00 |
4091 | 4107 | 3.052082 | CTTGTCCGGGCAGCAGTG | 61.052 | 66.667 | 9.61 | 0.00 | 0.00 | 3.66 |
4092 | 4108 | 3.537206 | GACTTGTCCGGGCAGCAGT | 62.537 | 63.158 | 13.16 | 13.16 | 0.00 | 4.40 |
4093 | 4109 | 2.743928 | GACTTGTCCGGGCAGCAG | 60.744 | 66.667 | 9.61 | 7.67 | 0.00 | 4.24 |
4094 | 4110 | 4.329545 | GGACTTGTCCGGGCAGCA | 62.330 | 66.667 | 9.61 | 0.00 | 0.00 | 4.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.