Multiple sequence alignment - TraesCS3B01G480600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G480600 chr3B 100.000 4052 0 0 1 4052 728619196 728615145 0.000000e+00 7483.0
1 TraesCS3B01G480600 chr3B 83.493 1878 205 52 1340 3152 728510539 728508702 0.000000e+00 1653.0
2 TraesCS3B01G480600 chr3B 79.266 2016 273 73 1340 3250 605912499 605910524 0.000000e+00 1273.0
3 TraesCS3B01G480600 chr3B 77.846 1941 259 87 1334 3163 727740877 727742757 0.000000e+00 1044.0
4 TraesCS3B01G480600 chr3B 79.023 1597 228 63 1340 2841 728890437 728888853 0.000000e+00 994.0
5 TraesCS3B01G480600 chr3B 78.928 1063 136 44 1340 2341 728753766 728752731 3.410000e-180 641.0
6 TraesCS3B01G480600 chr3B 77.894 959 150 45 1340 2250 728585558 728584614 1.280000e-149 540.0
7 TraesCS3B01G480600 chr3B 90.608 181 17 0 3872 4052 550641567 550641747 1.460000e-59 241.0
8 TraesCS3B01G480600 chr3B 81.148 122 15 6 3357 3470 728888391 728888270 1.550000e-14 91.6
9 TraesCS3B01G480600 chr3D 92.512 2217 113 17 1064 3247 549109805 549107609 0.000000e+00 3125.0
10 TraesCS3B01G480600 chr3D 83.992 1974 209 55 1340 3247 549061678 549059746 0.000000e+00 1796.0
11 TraesCS3B01G480600 chr3D 79.183 2008 288 65 1340 3250 458885672 458883698 0.000000e+00 1273.0
12 TraesCS3B01G480600 chr3D 92.053 755 53 6 7 758 549110563 549109813 0.000000e+00 1055.0
13 TraesCS3B01G480600 chr3D 91.105 697 40 6 3357 4052 549107573 549106898 0.000000e+00 924.0
14 TraesCS3B01G480600 chr3D 77.847 1598 210 74 1334 2833 548694613 548696164 0.000000e+00 857.0
15 TraesCS3B01G480600 chr3D 76.875 1613 215 84 1340 2846 549126935 549125375 0.000000e+00 767.0
16 TraesCS3B01G480600 chr3D 80.967 993 121 41 2195 3132 549052533 549051554 0.000000e+00 725.0
17 TraesCS3B01G480600 chr3D 79.718 1065 165 36 1340 2370 549349520 549348473 0.000000e+00 723.0
18 TraesCS3B01G480600 chr3D 78.648 1021 144 39 1334 2299 548712011 548713012 9.630000e-171 610.0
19 TraesCS3B01G480600 chr3D 80.308 843 126 18 1340 2151 549467724 549466891 5.790000e-168 601.0
20 TraesCS3B01G480600 chr3D 78.416 922 141 38 1340 2213 549073791 549072880 7.660000e-152 547.0
21 TraesCS3B01G480600 chr3D 87.003 377 37 4 961 1336 549349844 549349479 8.100000e-112 414.0
22 TraesCS3B01G480600 chr3D 84.071 452 40 9 3327 3776 549059749 549059328 1.360000e-109 407.0
23 TraesCS3B01G480600 chr3D 84.186 430 54 9 2743 3163 549066643 549066219 4.880000e-109 405.0
24 TraesCS3B01G480600 chr3D 91.468 293 25 0 1050 1342 549127180 549126888 1.750000e-108 403.0
25 TraesCS3B01G480600 chr3D 86.096 374 41 7 972 1343 549056898 549056534 3.800000e-105 392.0
26 TraesCS3B01G480600 chr3D 85.755 351 41 7 972 1322 548711703 548712044 2.980000e-96 363.0
27 TraesCS3B01G480600 chr3D 80.222 450 63 20 2810 3247 548727328 548727763 8.450000e-82 315.0
28 TraesCS3B01G480600 chr3D 87.398 246 26 5 3329 3570 458883702 458883458 1.110000e-70 278.0
29 TraesCS3B01G480600 chr3D 90.556 180 17 0 3873 4052 422517807 422517986 5.230000e-59 239.0
30 TraesCS3B01G480600 chr3D 78.652 267 35 10 437 683 394056258 394055994 1.510000e-34 158.0
31 TraesCS3B01G480600 chr3D 86.614 127 12 4 3246 3368 12881743 12881618 7.060000e-28 135.0
32 TraesCS3B01G480600 chr3D 84.536 97 9 3 2561 2651 549066792 549066696 1.550000e-14 91.6
33 TraesCS3B01G480600 chr3D 82.353 85 7 8 11 91 11335044 11334964 2.610000e-07 67.6
34 TraesCS3B01G480600 chr3A 83.570 1972 215 55 1340 3247 686538970 686537044 0.000000e+00 1746.0
35 TraesCS3B01G480600 chr3A 92.044 729 43 6 3327 4052 686583005 686582289 0.000000e+00 1011.0
36 TraesCS3B01G480600 chr3A 78.509 1717 239 59 1334 2952 601133693 601132009 0.000000e+00 1007.0
37 TraesCS3B01G480600 chr3A 92.093 645 30 7 2612 3247 686583634 686583002 0.000000e+00 889.0
38 TraesCS3B01G480600 chr3A 77.662 1531 210 74 1334 2772 686183355 686184845 0.000000e+00 811.0
39 TraesCS3B01G480600 chr3A 80.040 1002 143 37 1340 2298 686749564 686748577 0.000000e+00 689.0
40 TraesCS3B01G480600 chr3A 86.957 621 66 10 2637 3247 686708925 686708310 0.000000e+00 684.0
41 TraesCS3B01G480600 chr3A 94.713 435 21 2 2155 2589 686589032 686588600 0.000000e+00 675.0
42 TraesCS3B01G480600 chr3A 79.771 875 105 44 1812 2633 686549861 686549006 1.630000e-158 569.0
43 TraesCS3B01G480600 chr3A 78.610 935 142 37 2196 3089 686533975 686533058 2.110000e-157 566.0
44 TraesCS3B01G480600 chr3A 87.792 385 43 3 961 1342 686551665 686551282 7.990000e-122 448.0
45 TraesCS3B01G480600 chr3A 87.887 388 37 7 961 1342 686744075 686743692 7.990000e-122 448.0
46 TraesCS3B01G480600 chr3A 87.977 341 35 5 1002 1342 686183074 686183408 8.160000e-107 398.0
47 TraesCS3B01G480600 chr3A 86.286 350 35 7 975 1324 601133994 601133658 6.400000e-98 368.0
48 TraesCS3B01G480600 chr3A 85.475 358 40 10 972 1325 686535378 686535029 2.980000e-96 363.0
49 TraesCS3B01G480600 chr3A 82.391 460 40 10 3327 3776 686537047 686536619 2.980000e-96 363.0
50 TraesCS3B01G480600 chr3A 77.311 476 79 17 1340 1796 686551329 686550864 1.870000e-63 254.0
51 TraesCS3B01G480600 chr3A 85.000 120 15 3 561 677 743102552 743102433 7.110000e-23 119.0
52 TraesCS3B01G480600 chr7B 78.450 1935 282 72 1334 3168 543187269 543189168 0.000000e+00 1138.0
53 TraesCS3B01G480600 chr7B 95.652 46 1 1 78 122 727122223 727122268 5.620000e-09 73.1
54 TraesCS3B01G480600 chr4D 92.222 180 14 0 3873 4052 23322900 23322721 5.200000e-64 255.0
55 TraesCS3B01G480600 chr5D 91.667 180 14 1 3873 4052 256477675 256477497 8.700000e-62 248.0
56 TraesCS3B01G480600 chr2A 91.111 180 16 0 3873 4052 611937004 611937183 1.130000e-60 244.0
57 TraesCS3B01G480600 chr2A 88.596 114 11 2 3218 3330 32374995 32375107 1.960000e-28 137.0
58 TraesCS3B01G480600 chr5B 90.556 180 16 1 3873 4052 419852879 419853057 1.880000e-58 237.0
59 TraesCS3B01G480600 chr5B 93.814 97 6 0 3244 3340 13355076 13355172 3.260000e-31 147.0
60 TraesCS3B01G480600 chr5B 79.739 153 29 2 183 333 615374597 615374445 4.280000e-20 110.0
61 TraesCS3B01G480600 chr2D 90.556 180 16 1 3873 4052 36795768 36795946 1.880000e-58 237.0
62 TraesCS3B01G480600 chr1B 97.802 91 2 0 3244 3334 300581342 300581252 1.510000e-34 158.0
63 TraesCS3B01G480600 chr1B 93.814 97 6 0 3243 3339 453132586 453132490 3.260000e-31 147.0
64 TraesCS3B01G480600 chr2B 97.727 88 2 0 3245 3332 135374676 135374763 7.010000e-33 152.0
65 TraesCS3B01G480600 chr5A 93.069 101 6 1 3243 3343 709722480 709722579 3.260000e-31 147.0
66 TraesCS3B01G480600 chr7A 92.233 103 7 1 3246 3348 634098281 634098382 1.170000e-30 145.0
67 TraesCS3B01G480600 chr7A 92.079 101 8 0 3245 3345 733780522 733780622 4.220000e-30 143.0
68 TraesCS3B01G480600 chr7A 92.157 51 1 3 70 118 616991673 616991722 7.270000e-08 69.4
69 TraesCS3B01G480600 chr4B 82.639 144 21 4 536 675 585825115 585824972 1.530000e-24 124.0
70 TraesCS3B01G480600 chr1D 83.099 142 17 5 555 692 434612241 434612379 5.500000e-24 122.0
71 TraesCS3B01G480600 chr6A 89.247 93 10 0 586 678 115345805 115345897 2.560000e-22 117.0
72 TraesCS3B01G480600 chr6A 95.556 45 2 0 78 122 22909727 22909683 5.620000e-09 73.1
73 TraesCS3B01G480600 chr6D 94.595 74 4 0 605 678 96641930 96642003 9.200000e-22 115.0
74 TraesCS3B01G480600 chr6D 74.370 238 59 2 168 403 5482620 5482383 2.580000e-17 100.0
75 TraesCS3B01G480600 chr6D 92.593 54 0 4 64 115 54829881 54829932 1.560000e-09 75.0
76 TraesCS3B01G480600 chr4A 78.571 182 33 6 176 353 181642158 181642337 9.200000e-22 115.0
77 TraesCS3B01G480600 chr7D 82.075 106 17 2 18 121 71546264 71546159 5.580000e-14 89.8
78 TraesCS3B01G480600 chr7D 80.531 113 20 2 1 113 55614116 55614006 7.220000e-13 86.1
79 TraesCS3B01G480600 chr7D 88.136 59 3 4 60 116 614703067 614703011 2.610000e-07 67.6
80 TraesCS3B01G480600 chr7D 87.719 57 4 3 78 134 13291057 13291110 3.380000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G480600 chr3B 728615145 728619196 4051 True 7483.000000 7483 100.000000 1 4052 1 chr3B.!!$R4 4051
1 TraesCS3B01G480600 chr3B 728508702 728510539 1837 True 1653.000000 1653 83.493000 1340 3152 1 chr3B.!!$R2 1812
2 TraesCS3B01G480600 chr3B 605910524 605912499 1975 True 1273.000000 1273 79.266000 1340 3250 1 chr3B.!!$R1 1910
3 TraesCS3B01G480600 chr3B 727740877 727742757 1880 False 1044.000000 1044 77.846000 1334 3163 1 chr3B.!!$F2 1829
4 TraesCS3B01G480600 chr3B 728752731 728753766 1035 True 641.000000 641 78.928000 1340 2341 1 chr3B.!!$R5 1001
5 TraesCS3B01G480600 chr3B 728888270 728890437 2167 True 542.800000 994 80.085500 1340 3470 2 chr3B.!!$R6 2130
6 TraesCS3B01G480600 chr3B 728584614 728585558 944 True 540.000000 540 77.894000 1340 2250 1 chr3B.!!$R3 910
7 TraesCS3B01G480600 chr3D 549106898 549110563 3665 True 1701.333333 3125 91.890000 7 4052 3 chr3D.!!$R10 4045
8 TraesCS3B01G480600 chr3D 549056534 549061678 5144 True 865.000000 1796 84.719667 972 3776 3 chr3D.!!$R8 2804
9 TraesCS3B01G480600 chr3D 548694613 548696164 1551 False 857.000000 857 77.847000 1334 2833 1 chr3D.!!$F2 1499
10 TraesCS3B01G480600 chr3D 458883458 458885672 2214 True 775.500000 1273 83.290500 1340 3570 2 chr3D.!!$R7 2230
11 TraesCS3B01G480600 chr3D 549051554 549052533 979 True 725.000000 725 80.967000 2195 3132 1 chr3D.!!$R4 937
12 TraesCS3B01G480600 chr3D 549466891 549467724 833 True 601.000000 601 80.308000 1340 2151 1 chr3D.!!$R6 811
13 TraesCS3B01G480600 chr3D 549125375 549127180 1805 True 585.000000 767 84.171500 1050 2846 2 chr3D.!!$R11 1796
14 TraesCS3B01G480600 chr3D 549348473 549349844 1371 True 568.500000 723 83.360500 961 2370 2 chr3D.!!$R12 1409
15 TraesCS3B01G480600 chr3D 549072880 549073791 911 True 547.000000 547 78.416000 1340 2213 1 chr3D.!!$R5 873
16 TraesCS3B01G480600 chr3D 548711703 548713012 1309 False 486.500000 610 82.201500 972 2299 2 chr3D.!!$F4 1327
17 TraesCS3B01G480600 chr3D 549066219 549066792 573 True 248.300000 405 84.361000 2561 3163 2 chr3D.!!$R9 602
18 TraesCS3B01G480600 chr3A 686582289 686583634 1345 True 950.000000 1011 92.068500 2612 4052 2 chr3A.!!$R9 1440
19 TraesCS3B01G480600 chr3A 686533058 686538970 5912 True 759.500000 1746 82.511500 972 3776 4 chr3A.!!$R7 2804
20 TraesCS3B01G480600 chr3A 686748577 686749564 987 True 689.000000 689 80.040000 1340 2298 1 chr3A.!!$R4 958
21 TraesCS3B01G480600 chr3A 601132009 601133994 1985 True 687.500000 1007 82.397500 975 2952 2 chr3A.!!$R6 1977
22 TraesCS3B01G480600 chr3A 686708310 686708925 615 True 684.000000 684 86.957000 2637 3247 1 chr3A.!!$R2 610
23 TraesCS3B01G480600 chr3A 686183074 686184845 1771 False 604.500000 811 82.819500 1002 2772 2 chr3A.!!$F1 1770
24 TraesCS3B01G480600 chr3A 686549006 686551665 2659 True 423.666667 569 81.624667 961 2633 3 chr3A.!!$R8 1672
25 TraesCS3B01G480600 chr7B 543187269 543189168 1899 False 1138.000000 1138 78.450000 1334 3168 1 chr7B.!!$F1 1834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 919 0.107165 AAAGCAATCCCCTCGCTACC 60.107 55.0 0.00 0.0 34.11 3.18 F
916 920 0.983378 AAGCAATCCCCTCGCTACCT 60.983 55.0 0.00 0.0 34.11 3.08 F
2147 7165 0.665298 GCTGCAGGTAATAGCCAAGC 59.335 55.0 17.12 0.0 34.04 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 6838 0.333993 ACATGGATGAAGCCAAGCCT 59.666 50.000 0.00 0.0 42.16 4.58 R
2581 7913 1.468565 CGAAATTCCCGCGAGAGTACA 60.469 52.381 8.23 0.0 0.00 2.90 R
3223 8705 0.988832 TAGGCAAAGTAGTGGGTGGG 59.011 55.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.574196 TTTTAACTTTGATCTACTTTGCAAGC 57.426 30.769 0.00 0.00 0.00 4.01
65 66 4.047822 GGCATTCTCTTCACTCTGTATCG 58.952 47.826 0.00 0.00 0.00 2.92
70 71 5.060662 TCTCTTCACTCTGTATCGGTTTG 57.939 43.478 0.00 0.00 0.00 2.93
72 73 5.419155 TCTCTTCACTCTGTATCGGTTTGAT 59.581 40.000 0.00 0.00 41.30 2.57
134 135 5.553123 TCAGATATAACCCACGTTTGTTGT 58.447 37.500 9.19 5.77 33.17 3.32
205 206 6.480320 CACTTAGTAGGAATAATGCCTCACAC 59.520 42.308 0.00 0.00 36.96 3.82
221 222 3.766691 ACGTTCGATCCCCACCCG 61.767 66.667 0.00 0.00 0.00 5.28
236 237 1.909459 ACCCGATGGTGCATGTAGCA 61.909 55.000 18.00 18.00 45.58 3.49
302 304 4.386049 GGATTCGGTCAATGCTATTCTACG 59.614 45.833 0.00 0.00 30.18 3.51
328 330 4.082081 GGACATGTTTGGATGCAATCTTCA 60.082 41.667 0.00 0.00 44.71 3.02
341 343 6.258230 TGCAATCTTCATTCGTCTTTGATT 57.742 33.333 0.00 0.00 0.00 2.57
353 355 6.612247 TCGTCTTTGATTGTGTGTTTACAT 57.388 33.333 0.00 0.00 39.39 2.29
380 382 7.067496 TCAACCCTTCCAATATATGACTCTC 57.933 40.000 0.00 0.00 0.00 3.20
381 383 6.846505 TCAACCCTTCCAATATATGACTCTCT 59.153 38.462 0.00 0.00 0.00 3.10
423 425 3.853355 AATCCTGTGAGGGCTTATCAG 57.147 47.619 0.00 0.00 35.59 2.90
433 435 1.757699 GGGCTTATCAGGACGACTTCT 59.242 52.381 0.00 0.00 0.00 2.85
434 436 2.957006 GGGCTTATCAGGACGACTTCTA 59.043 50.000 0.00 0.00 0.00 2.10
439 441 5.918011 GCTTATCAGGACGACTTCTAGATTG 59.082 44.000 0.00 0.00 0.00 2.67
459 461 5.638596 TTGTCTATTACTCGCTCTGTTCA 57.361 39.130 0.00 0.00 0.00 3.18
467 469 6.647212 TTACTCGCTCTGTTCAATAATGTG 57.353 37.500 0.00 0.00 0.00 3.21
468 470 4.569943 ACTCGCTCTGTTCAATAATGTGT 58.430 39.130 0.00 0.00 0.00 3.72
469 471 4.389992 ACTCGCTCTGTTCAATAATGTGTG 59.610 41.667 0.00 0.00 0.00 3.82
470 472 3.125146 TCGCTCTGTTCAATAATGTGTGC 59.875 43.478 0.00 0.00 0.00 4.57
595 598 5.818136 TGTAAGTTTGGCATTCTAGATGC 57.182 39.130 14.95 14.95 43.85 3.91
628 632 6.702716 TCTCCGTAAATTTGGTCAAAGTTT 57.297 33.333 13.08 10.11 39.07 2.66
644 648 6.311200 GTCAAAGTTTGTGATGCTTGACTTTT 59.689 34.615 15.08 0.00 35.75 2.27
678 682 9.208022 TCTATATGCACTACATTATGAAACAGC 57.792 33.333 0.00 0.00 40.38 4.40
683 687 5.390461 GCACTACATTATGAAACAGCGTGAA 60.390 40.000 0.00 0.00 0.00 3.18
697 701 8.728088 AAACAGCGTGAATAGAATAAAGTTTG 57.272 30.769 0.00 0.00 0.00 2.93
707 711 7.681939 ATAGAATAAAGTTTGTTTGCTCCGA 57.318 32.000 0.00 0.00 0.00 4.55
710 714 3.369546 AAAGTTTGTTTGCTCCGATGG 57.630 42.857 0.00 0.00 0.00 3.51
713 717 0.897863 TTTGTTTGCTCCGATGGGGG 60.898 55.000 0.00 0.00 36.60 5.40
726 730 1.068352 ATGGGGGAGGGGCAATAGTC 61.068 60.000 0.00 0.00 0.00 2.59
730 734 0.111253 GGGAGGGGCAATAGTCATGG 59.889 60.000 0.00 0.00 0.00 3.66
737 741 2.553904 GGGCAATAGTCATGGATCTGGG 60.554 54.545 0.00 0.00 0.00 4.45
747 751 6.256053 AGTCATGGATCTGGGTGTAATTTTT 58.744 36.000 0.00 0.00 0.00 1.94
758 762 5.470777 TGGGTGTAATTTTTGTTACCTCTCG 59.529 40.000 0.00 0.00 34.43 4.04
759 763 5.702209 GGGTGTAATTTTTGTTACCTCTCGA 59.298 40.000 0.00 0.00 34.43 4.04
761 765 7.094506 GGGTGTAATTTTTGTTACCTCTCGAAT 60.095 37.037 0.00 0.00 34.43 3.34
762 766 7.749126 GGTGTAATTTTTGTTACCTCTCGAATG 59.251 37.037 0.00 0.00 34.43 2.67
763 767 8.287503 GTGTAATTTTTGTTACCTCTCGAATGT 58.712 33.333 0.00 0.00 34.43 2.71
764 768 8.842280 TGTAATTTTTGTTACCTCTCGAATGTT 58.158 29.630 0.00 0.00 34.43 2.71
769 773 9.672086 TTTTTGTTACCTCTCGAATGTTATTTG 57.328 29.630 0.00 0.00 0.00 2.32
770 774 7.972832 TTGTTACCTCTCGAATGTTATTTGT 57.027 32.000 0.00 0.00 0.00 2.83
771 775 9.491675 TTTGTTACCTCTCGAATGTTATTTGTA 57.508 29.630 0.00 0.00 0.00 2.41
772 776 8.470040 TGTTACCTCTCGAATGTTATTTGTAC 57.530 34.615 0.00 0.00 0.00 2.90
773 777 8.308931 TGTTACCTCTCGAATGTTATTTGTACT 58.691 33.333 0.00 0.00 0.00 2.73
774 778 8.592998 GTTACCTCTCGAATGTTATTTGTACTG 58.407 37.037 0.00 0.00 0.00 2.74
775 779 6.931838 ACCTCTCGAATGTTATTTGTACTGA 58.068 36.000 0.00 0.00 0.00 3.41
776 780 6.812160 ACCTCTCGAATGTTATTTGTACTGAC 59.188 38.462 0.00 0.00 0.00 3.51
777 781 6.811665 CCTCTCGAATGTTATTTGTACTGACA 59.188 38.462 0.00 0.00 0.00 3.58
778 782 7.492669 CCTCTCGAATGTTATTTGTACTGACAT 59.507 37.037 0.00 0.00 34.86 3.06
779 783 8.185003 TCTCGAATGTTATTTGTACTGACATG 57.815 34.615 0.00 0.00 34.86 3.21
780 784 8.032451 TCTCGAATGTTATTTGTACTGACATGA 58.968 33.333 0.00 0.00 34.86 3.07
781 785 8.716646 TCGAATGTTATTTGTACTGACATGAT 57.283 30.769 0.00 0.00 34.86 2.45
782 786 9.161629 TCGAATGTTATTTGTACTGACATGATT 57.838 29.630 0.00 0.00 34.86 2.57
783 787 9.213819 CGAATGTTATTTGTACTGACATGATTG 57.786 33.333 0.00 0.00 34.86 2.67
791 795 9.850628 ATTTGTACTGACATGATTGATTTCTTG 57.149 29.630 0.00 0.00 34.86 3.02
792 796 8.620116 TTGTACTGACATGATTGATTTCTTGA 57.380 30.769 0.00 0.00 34.86 3.02
793 797 8.260270 TGTACTGACATGATTGATTTCTTGAG 57.740 34.615 0.00 0.00 0.00 3.02
794 798 8.096414 TGTACTGACATGATTGATTTCTTGAGA 58.904 33.333 0.00 0.00 0.00 3.27
795 799 7.612668 ACTGACATGATTGATTTCTTGAGAG 57.387 36.000 0.00 0.00 0.00 3.20
796 800 6.093771 ACTGACATGATTGATTTCTTGAGAGC 59.906 38.462 0.00 0.00 0.00 4.09
797 801 6.178324 TGACATGATTGATTTCTTGAGAGCT 58.822 36.000 0.00 0.00 0.00 4.09
798 802 7.333323 TGACATGATTGATTTCTTGAGAGCTA 58.667 34.615 0.00 0.00 0.00 3.32
799 803 7.494952 TGACATGATTGATTTCTTGAGAGCTAG 59.505 37.037 0.00 0.00 0.00 3.42
800 804 7.337167 ACATGATTGATTTCTTGAGAGCTAGT 58.663 34.615 0.00 0.00 0.00 2.57
801 805 8.481314 ACATGATTGATTTCTTGAGAGCTAGTA 58.519 33.333 0.00 0.00 0.00 1.82
802 806 9.322773 CATGATTGATTTCTTGAGAGCTAGTAA 57.677 33.333 0.00 0.00 0.00 2.24
803 807 9.896645 ATGATTGATTTCTTGAGAGCTAGTAAA 57.103 29.630 0.00 0.00 0.00 2.01
804 808 9.725019 TGATTGATTTCTTGAGAGCTAGTAAAA 57.275 29.630 0.00 0.00 0.00 1.52
806 810 9.950496 ATTGATTTCTTGAGAGCTAGTAAAAGA 57.050 29.630 0.00 0.00 0.00 2.52
807 811 9.778741 TTGATTTCTTGAGAGCTAGTAAAAGAA 57.221 29.630 0.00 0.00 33.18 2.52
808 812 9.778741 TGATTTCTTGAGAGCTAGTAAAAGAAA 57.221 29.630 17.44 17.44 43.69 2.52
811 815 7.639162 TCTTGAGAGCTAGTAAAAGAAAACG 57.361 36.000 0.00 0.00 0.00 3.60
812 816 7.208080 TCTTGAGAGCTAGTAAAAGAAAACGT 58.792 34.615 0.00 0.00 0.00 3.99
813 817 7.709613 TCTTGAGAGCTAGTAAAAGAAAACGTT 59.290 33.333 0.00 0.00 0.00 3.99
814 818 7.781548 TGAGAGCTAGTAAAAGAAAACGTTT 57.218 32.000 7.96 7.96 0.00 3.60
815 819 7.627340 TGAGAGCTAGTAAAAGAAAACGTTTG 58.373 34.615 15.46 0.00 0.00 2.93
816 820 6.427974 AGAGCTAGTAAAAGAAAACGTTTGC 58.572 36.000 15.46 13.33 0.00 3.68
817 821 6.037830 AGAGCTAGTAAAAGAAAACGTTTGCA 59.962 34.615 21.00 0.00 0.00 4.08
818 822 6.735130 AGCTAGTAAAAGAAAACGTTTGCAT 58.265 32.000 21.00 6.33 0.00 3.96
819 823 7.867752 AGCTAGTAAAAGAAAACGTTTGCATA 58.132 30.769 21.00 8.21 0.00 3.14
820 824 8.347035 AGCTAGTAAAAGAAAACGTTTGCATAA 58.653 29.630 21.00 0.84 0.00 1.90
821 825 8.627428 GCTAGTAAAAGAAAACGTTTGCATAAG 58.373 33.333 21.00 8.89 0.00 1.73
822 826 9.872757 CTAGTAAAAGAAAACGTTTGCATAAGA 57.127 29.630 21.00 0.00 0.00 2.10
823 827 8.556517 AGTAAAAGAAAACGTTTGCATAAGAC 57.443 30.769 21.00 11.33 0.00 3.01
824 828 8.403236 AGTAAAAGAAAACGTTTGCATAAGACT 58.597 29.630 21.00 13.19 0.00 3.24
825 829 7.449934 AAAAGAAAACGTTTGCATAAGACTG 57.550 32.000 21.00 0.00 0.00 3.51
826 830 4.537015 AGAAAACGTTTGCATAAGACTGC 58.463 39.130 21.00 0.00 42.62 4.40
827 831 2.594529 AACGTTTGCATAAGACTGCG 57.405 45.000 0.00 0.00 45.30 5.18
828 832 1.508632 ACGTTTGCATAAGACTGCGT 58.491 45.000 0.00 0.00 45.30 5.24
829 833 2.679450 ACGTTTGCATAAGACTGCGTA 58.321 42.857 0.00 0.00 45.30 4.42
830 834 2.666508 ACGTTTGCATAAGACTGCGTAG 59.333 45.455 0.00 0.00 45.30 3.51
850 854 7.521509 CGTAGCTGTAGCATTTTTACTTAGT 57.478 36.000 6.65 0.00 45.16 2.24
851 855 7.391786 CGTAGCTGTAGCATTTTTACTTAGTG 58.608 38.462 6.65 0.00 45.16 2.74
852 856 7.274904 CGTAGCTGTAGCATTTTTACTTAGTGA 59.725 37.037 6.65 0.00 45.16 3.41
853 857 7.602517 AGCTGTAGCATTTTTACTTAGTGAG 57.397 36.000 6.65 0.00 45.16 3.51
854 858 7.162082 AGCTGTAGCATTTTTACTTAGTGAGT 58.838 34.615 6.65 0.00 45.16 3.41
855 859 7.118390 AGCTGTAGCATTTTTACTTAGTGAGTG 59.882 37.037 6.65 0.00 45.16 3.51
856 860 7.117812 GCTGTAGCATTTTTACTTAGTGAGTGA 59.882 37.037 0.00 0.00 39.03 3.41
857 861 8.896320 TGTAGCATTTTTACTTAGTGAGTGAA 57.104 30.769 0.00 0.00 39.48 3.18
858 862 8.988934 TGTAGCATTTTTACTTAGTGAGTGAAG 58.011 33.333 0.00 0.00 39.48 3.02
859 863 8.989980 GTAGCATTTTTACTTAGTGAGTGAAGT 58.010 33.333 0.00 0.00 39.48 3.01
860 864 7.865707 AGCATTTTTACTTAGTGAGTGAAGTG 58.134 34.615 0.00 1.92 39.48 3.16
861 865 7.715249 AGCATTTTTACTTAGTGAGTGAAGTGA 59.285 33.333 0.00 0.00 39.48 3.41
862 866 8.012241 GCATTTTTACTTAGTGAGTGAAGTGAG 58.988 37.037 0.00 0.00 39.48 3.51
863 867 8.499162 CATTTTTACTTAGTGAGTGAAGTGAGG 58.501 37.037 0.00 0.00 39.48 3.86
864 868 6.726490 TTTACTTAGTGAGTGAAGTGAGGT 57.274 37.500 0.00 0.00 39.48 3.85
865 869 4.857509 ACTTAGTGAGTGAAGTGAGGTC 57.142 45.455 0.00 0.00 37.17 3.85
866 870 4.215908 ACTTAGTGAGTGAAGTGAGGTCA 58.784 43.478 0.00 0.00 37.17 4.02
867 871 4.649674 ACTTAGTGAGTGAAGTGAGGTCAA 59.350 41.667 0.00 0.00 37.17 3.18
868 872 3.742433 AGTGAGTGAAGTGAGGTCAAG 57.258 47.619 0.00 0.00 0.00 3.02
869 873 3.034635 AGTGAGTGAAGTGAGGTCAAGT 58.965 45.455 0.00 0.00 0.00 3.16
870 874 3.068873 AGTGAGTGAAGTGAGGTCAAGTC 59.931 47.826 0.00 0.00 0.00 3.01
871 875 2.365617 TGAGTGAAGTGAGGTCAAGTCC 59.634 50.000 0.00 0.00 0.00 3.85
872 876 2.365617 GAGTGAAGTGAGGTCAAGTCCA 59.634 50.000 0.00 0.00 0.00 4.02
873 877 2.366916 AGTGAAGTGAGGTCAAGTCCAG 59.633 50.000 0.00 0.00 0.00 3.86
874 878 1.694150 TGAAGTGAGGTCAAGTCCAGG 59.306 52.381 0.00 0.00 0.00 4.45
875 879 0.398318 AAGTGAGGTCAAGTCCAGGC 59.602 55.000 0.00 0.00 0.00 4.85
876 880 1.374758 GTGAGGTCAAGTCCAGGCG 60.375 63.158 0.00 0.00 0.00 5.52
877 881 2.266055 GAGGTCAAGTCCAGGCGG 59.734 66.667 0.00 0.00 0.00 6.13
878 882 3.959991 GAGGTCAAGTCCAGGCGGC 62.960 68.421 0.00 0.00 0.00 6.53
882 886 4.473520 CAAGTCCAGGCGGCGGAT 62.474 66.667 21.36 7.71 34.32 4.18
883 887 4.162690 AAGTCCAGGCGGCGGATC 62.163 66.667 21.36 15.67 34.32 3.36
885 889 4.899239 GTCCAGGCGGCGGATCTG 62.899 72.222 21.36 6.97 34.32 2.90
891 895 4.615815 GCGGCGGATCTGGCATCT 62.616 66.667 26.05 0.00 0.00 2.90
892 896 2.356793 CGGCGGATCTGGCATCTC 60.357 66.667 26.05 0.00 0.00 2.75
893 897 2.356793 GGCGGATCTGGCATCTCG 60.357 66.667 22.49 1.23 0.00 4.04
894 898 3.040763 GCGGATCTGGCATCTCGC 61.041 66.667 3.14 8.38 41.28 5.03
904 908 3.247033 GCATCTCGCCAAAGCAATC 57.753 52.632 0.00 0.00 39.83 2.67
905 909 0.248784 GCATCTCGCCAAAGCAATCC 60.249 55.000 0.00 0.00 39.83 3.01
906 910 0.383231 CATCTCGCCAAAGCAATCCC 59.617 55.000 0.00 0.00 39.83 3.85
907 911 0.753111 ATCTCGCCAAAGCAATCCCC 60.753 55.000 0.00 0.00 39.83 4.81
908 912 1.379044 CTCGCCAAAGCAATCCCCT 60.379 57.895 0.00 0.00 39.83 4.79
909 913 1.378514 TCGCCAAAGCAATCCCCTC 60.379 57.895 0.00 0.00 39.83 4.30
910 914 2.764314 CGCCAAAGCAATCCCCTCG 61.764 63.158 0.00 0.00 39.83 4.63
911 915 3.068729 GCCAAAGCAATCCCCTCGC 62.069 63.158 0.00 0.00 39.53 5.03
912 916 1.379044 CCAAAGCAATCCCCTCGCT 60.379 57.895 0.00 0.00 37.68 4.93
913 917 0.107214 CCAAAGCAATCCCCTCGCTA 60.107 55.000 0.00 0.00 34.11 4.26
914 918 1.017387 CAAAGCAATCCCCTCGCTAC 58.983 55.000 0.00 0.00 34.11 3.58
915 919 0.107165 AAAGCAATCCCCTCGCTACC 60.107 55.000 0.00 0.00 34.11 3.18
916 920 0.983378 AAGCAATCCCCTCGCTACCT 60.983 55.000 0.00 0.00 34.11 3.08
917 921 1.069935 GCAATCCCCTCGCTACCTC 59.930 63.158 0.00 0.00 0.00 3.85
918 922 1.364171 CAATCCCCTCGCTACCTCG 59.636 63.158 0.00 0.00 0.00 4.63
919 923 2.499827 AATCCCCTCGCTACCTCGC 61.500 63.158 0.00 0.00 0.00 5.03
924 928 4.914420 CTCGCTACCTCGCCGCTG 62.914 72.222 0.00 0.00 0.00 5.18
932 936 4.827087 CTCGCCGCTGCCACATCT 62.827 66.667 0.00 0.00 0.00 2.90
933 937 4.819761 TCGCCGCTGCCACATCTC 62.820 66.667 0.00 0.00 0.00 2.75
1006 1010 1.524621 CCAAGCCCTACCATGAGCG 60.525 63.158 0.00 0.00 0.00 5.03
1008 1012 2.669133 AAGCCCTACCATGAGCGCA 61.669 57.895 11.47 0.00 0.00 6.09
1013 1017 1.156645 CCTACCATGAGCGCAAGAGC 61.157 60.000 11.47 0.00 43.02 4.09
1206 1216 4.101790 CAACGCCGCTTCCGCAAT 62.102 61.111 0.00 0.00 35.30 3.56
1338 1348 2.095978 CTCCCAACAAGGACGACCGT 62.096 60.000 0.00 0.00 41.22 4.83
1698 5691 1.339727 GGAGCCGGTACTTTGATTGGT 60.340 52.381 1.90 0.00 0.00 3.67
1707 5700 6.350906 CGGTACTTTGATTGGTAATTCCCTA 58.649 40.000 0.00 0.00 34.77 3.53
1727 5732 1.003718 GCTGGTTACTTCGGGTGCT 60.004 57.895 0.00 0.00 0.00 4.40
1840 6838 4.222145 GGATTATACCTGCCGAAGATGGTA 59.778 45.833 0.00 0.00 39.09 3.25
1863 6866 1.938577 CTTGGCTTCATCCATGTCTCG 59.061 52.381 0.00 0.00 35.77 4.04
1992 7010 4.957327 GGAGACTCTATCACTTTAGTGGGT 59.043 45.833 9.82 2.72 45.65 4.51
2146 7164 2.042686 TGCTGCAGGTAATAGCCAAG 57.957 50.000 17.12 0.00 36.64 3.61
2147 7165 0.665298 GCTGCAGGTAATAGCCAAGC 59.335 55.000 17.12 0.00 34.04 4.01
2148 7166 1.312815 CTGCAGGTAATAGCCAAGCC 58.687 55.000 5.57 0.00 32.98 4.35
2149 7167 0.918983 TGCAGGTAATAGCCAAGCCT 59.081 50.000 0.00 0.00 32.98 4.58
2152 7170 2.683742 GCAGGTAATAGCCAAGCCTTCA 60.684 50.000 0.00 0.00 0.00 3.02
2153 7171 2.945668 CAGGTAATAGCCAAGCCTTCAC 59.054 50.000 0.00 0.00 0.00 3.18
2456 7756 0.772124 TCCCTTGTGGAAGAGCCCTT 60.772 55.000 0.00 0.00 41.40 3.95
2460 7760 1.349026 CTTGTGGAAGAGCCCTTCTGA 59.651 52.381 7.98 0.00 46.16 3.27
2461 7761 1.434188 TGTGGAAGAGCCCTTCTGAA 58.566 50.000 7.98 0.00 46.16 3.02
2600 7960 2.288961 TGTACTCTCGCGGGAATTTC 57.711 50.000 11.25 1.47 0.00 2.17
2660 8045 4.274214 ACAATGTGACACATGACAGTCAAG 59.726 41.667 21.49 5.69 45.38 3.02
2779 8171 1.468914 GGAAGCTGGAACCGATTGAAC 59.531 52.381 0.00 0.00 0.00 3.18
2884 8342 6.832520 TTTATGGCTCATGTTGCTTTTCTA 57.167 33.333 11.76 0.00 0.00 2.10
3132 8602 6.617782 ATTATCTCCTAGATGTGTCCATGG 57.382 41.667 4.97 4.97 35.37 3.66
3133 8603 2.682594 TCTCCTAGATGTGTCCATGGG 58.317 52.381 13.02 0.00 0.00 4.00
3134 8604 1.696336 CTCCTAGATGTGTCCATGGGG 59.304 57.143 13.02 1.33 0.00 4.96
3135 8605 1.293763 TCCTAGATGTGTCCATGGGGA 59.706 52.381 13.02 4.06 42.29 4.81
3138 8608 9.428532 ATCTCCTAGATGTGTCCATGGGGATAT 62.429 44.444 13.02 2.28 38.43 1.63
3170 8646 4.276183 TGCTAGTTTACAATTTGTTGCCGA 59.724 37.500 7.45 0.00 0.00 5.54
3247 8730 4.251268 CACCCACTACTTTGCCTAAGTAC 58.749 47.826 4.84 0.00 45.22 2.73
3251 8734 4.382793 CCACTACTTTGCCTAAGTACTCCC 60.383 50.000 0.00 0.00 45.22 4.30
3252 8735 4.466726 CACTACTTTGCCTAAGTACTCCCT 59.533 45.833 0.00 0.00 45.22 4.20
3253 8736 4.710865 ACTACTTTGCCTAAGTACTCCCTC 59.289 45.833 0.00 0.00 45.22 4.30
3255 8738 3.515901 ACTTTGCCTAAGTACTCCCTCTG 59.484 47.826 0.00 0.00 45.22 3.35
3256 8739 2.921834 TGCCTAAGTACTCCCTCTGT 57.078 50.000 0.00 0.00 0.00 3.41
3258 8741 4.326600 TGCCTAAGTACTCCCTCTGTAA 57.673 45.455 0.00 0.00 0.00 2.41
3260 8743 4.465305 TGCCTAAGTACTCCCTCTGTAAAC 59.535 45.833 0.00 0.00 0.00 2.01
3261 8744 4.710865 GCCTAAGTACTCCCTCTGTAAACT 59.289 45.833 0.00 0.00 0.00 2.66
3262 8745 5.890419 GCCTAAGTACTCCCTCTGTAAACTA 59.110 44.000 0.00 0.00 0.00 2.24
3263 8746 6.379417 GCCTAAGTACTCCCTCTGTAAACTAA 59.621 42.308 0.00 0.00 0.00 2.24
3264 8747 7.069702 GCCTAAGTACTCCCTCTGTAAACTAAT 59.930 40.741 0.00 0.00 0.00 1.73
3265 8748 9.638176 CCTAAGTACTCCCTCTGTAAACTAATA 57.362 37.037 0.00 0.00 0.00 0.98
3272 8755 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3273 8756 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3274 8757 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3275 8758 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3276 8759 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3292 8775 8.828688 AAGAGCGTTTAGAACACTAAAATAGT 57.171 30.769 0.00 0.00 37.69 2.12
3325 8808 8.617290 ATGCTTTTATATTAGTTTACGGAGGG 57.383 34.615 0.00 0.00 0.00 4.30
3326 8809 7.794041 TGCTTTTATATTAGTTTACGGAGGGA 58.206 34.615 0.00 0.00 0.00 4.20
3327 8810 7.929785 TGCTTTTATATTAGTTTACGGAGGGAG 59.070 37.037 0.00 0.00 0.00 4.30
3328 8811 7.930325 GCTTTTATATTAGTTTACGGAGGGAGT 59.070 37.037 0.00 0.00 0.00 3.85
3334 8817 6.855763 TTAGTTTACGGAGGGAGTAATTGA 57.144 37.500 0.00 0.00 34.50 2.57
3338 8821 8.030913 AGTTTACGGAGGGAGTAATTGATAAT 57.969 34.615 0.00 0.00 34.50 1.28
3341 8824 9.991906 TTTACGGAGGGAGTAATTGATAATTAG 57.008 33.333 0.00 0.00 34.23 1.73
3384 8876 9.465985 GTAATTCAGAATCCTAGTTAGTACAGC 57.534 37.037 0.00 0.00 0.00 4.40
3637 9141 4.580167 AGCACTGTTTTGACTTCTAATGCA 59.420 37.500 0.00 0.00 0.00 3.96
3638 9142 5.067674 AGCACTGTTTTGACTTCTAATGCAA 59.932 36.000 0.00 0.00 0.00 4.08
3639 9143 5.173854 GCACTGTTTTGACTTCTAATGCAAC 59.826 40.000 0.00 0.00 0.00 4.17
3640 9144 6.498304 CACTGTTTTGACTTCTAATGCAACT 58.502 36.000 0.00 0.00 0.00 3.16
3641 9145 6.974622 CACTGTTTTGACTTCTAATGCAACTT 59.025 34.615 0.00 0.00 0.00 2.66
3642 9146 8.128582 CACTGTTTTGACTTCTAATGCAACTTA 58.871 33.333 0.00 0.00 0.00 2.24
3643 9147 8.850156 ACTGTTTTGACTTCTAATGCAACTTAT 58.150 29.630 0.00 0.00 0.00 1.73
3644 9148 9.121517 CTGTTTTGACTTCTAATGCAACTTATG 57.878 33.333 0.00 0.00 0.00 1.90
3751 9255 6.750148 ACTAGTTCCTTTGTGAGTAGTTCTG 58.250 40.000 0.00 0.00 0.00 3.02
3871 9775 7.497925 TTTACATTATATTGTGCATGCCGTA 57.502 32.000 16.68 3.09 0.00 4.02
3940 11951 0.698238 TCATGGGTTTGAGTCCTGGG 59.302 55.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.862371 TGCAAAGTAGATCAAAGTTAAAAACAA 57.138 25.926 0.00 0.00 0.00 2.83
13 14 9.862371 TTGCAAAGTAGATCAAAGTTAAAAACA 57.138 25.926 0.00 0.00 0.00 2.83
37 38 0.449388 GTGAAGAGAATGCCCGCTTG 59.551 55.000 0.00 0.00 0.00 4.01
41 42 1.066573 ACAGAGTGAAGAGAATGCCCG 60.067 52.381 0.00 0.00 0.00 6.13
205 206 2.792947 ATCGGGTGGGGATCGAACG 61.793 63.158 0.00 0.00 36.49 3.95
236 237 3.649981 CACCTCCATACCCTTCTGATGAT 59.350 47.826 0.00 0.00 0.00 2.45
239 240 2.774234 CACACCTCCATACCCTTCTGAT 59.226 50.000 0.00 0.00 0.00 2.90
242 243 2.188817 GACACACCTCCATACCCTTCT 58.811 52.381 0.00 0.00 0.00 2.85
289 291 5.858381 ACATGTCCATCGTAGAATAGCATT 58.142 37.500 0.00 0.00 43.58 3.56
293 295 6.280643 TCCAAACATGTCCATCGTAGAATAG 58.719 40.000 0.00 0.00 43.58 1.73
302 304 3.872511 TTGCATCCAAACATGTCCATC 57.127 42.857 0.00 0.00 0.00 3.51
328 330 7.022055 TGTAAACACACAATCAAAGACGAAT 57.978 32.000 0.00 0.00 0.00 3.34
341 343 6.207810 GGAAGGGTTGAATATGTAAACACACA 59.792 38.462 0.00 0.00 29.34 3.72
353 355 9.170890 AGAGTCATATATTGGAAGGGTTGAATA 57.829 33.333 0.00 0.00 0.00 1.75
360 362 7.308450 TGAAGAGAGTCATATATTGGAAGGG 57.692 40.000 0.00 0.00 0.00 3.95
380 382 1.202065 CGGCAACCATCGTCAATGAAG 60.202 52.381 0.00 0.00 37.59 3.02
381 383 0.801872 CGGCAACCATCGTCAATGAA 59.198 50.000 0.00 0.00 37.59 2.57
423 425 8.156994 AGTAATAGACAATCTAGAAGTCGTCC 57.843 38.462 17.81 9.30 37.36 4.79
433 435 7.282450 TGAACAGAGCGAGTAATAGACAATCTA 59.718 37.037 0.00 0.00 32.87 1.98
434 436 6.095580 TGAACAGAGCGAGTAATAGACAATCT 59.904 38.462 0.00 0.00 0.00 2.40
439 441 8.695284 CATTATTGAACAGAGCGAGTAATAGAC 58.305 37.037 0.00 0.00 0.00 2.59
610 614 7.224557 AGCATCACAAACTTTGACCAAATTTAC 59.775 33.333 8.55 0.00 0.00 2.01
611 615 7.271511 AGCATCACAAACTTTGACCAAATTTA 58.728 30.769 8.55 0.00 0.00 1.40
652 656 9.208022 GCTGTTTCATAATGTAGTGCATATAGA 57.792 33.333 0.00 0.00 36.67 1.98
653 657 8.164790 CGCTGTTTCATAATGTAGTGCATATAG 58.835 37.037 0.00 0.00 36.67 1.31
678 682 8.728088 AGCAAACAAACTTTATTCTATTCACG 57.272 30.769 0.00 0.00 0.00 4.35
683 687 7.681939 TCGGAGCAAACAAACTTTATTCTAT 57.318 32.000 0.00 0.00 0.00 1.98
693 697 0.243636 CCCCATCGGAGCAAACAAAC 59.756 55.000 0.00 0.00 0.00 2.93
697 701 1.452108 CTCCCCCATCGGAGCAAAC 60.452 63.158 0.00 0.00 43.01 2.93
707 711 1.007445 ACTATTGCCCCTCCCCCAT 59.993 57.895 0.00 0.00 0.00 4.00
710 714 0.111253 CATGACTATTGCCCCTCCCC 59.889 60.000 0.00 0.00 0.00 4.81
713 717 2.641815 AGATCCATGACTATTGCCCCTC 59.358 50.000 0.00 0.00 0.00 4.30
720 724 6.770286 ATTACACCCAGATCCATGACTATT 57.230 37.500 0.00 0.00 0.00 1.73
726 730 6.284891 ACAAAAATTACACCCAGATCCATG 57.715 37.500 0.00 0.00 0.00 3.66
730 734 7.393515 AGAGGTAACAAAAATTACACCCAGATC 59.606 37.037 0.00 0.00 36.87 2.75
737 741 8.287503 ACATTCGAGAGGTAACAAAAATTACAC 58.712 33.333 0.00 0.00 36.87 2.90
747 751 8.308931 AGTACAAATAACATTCGAGAGGTAACA 58.691 33.333 0.00 0.00 41.41 2.41
765 769 9.850628 CAAGAAATCAATCATGTCAGTACAAAT 57.149 29.630 0.00 0.00 39.58 2.32
766 770 9.065798 TCAAGAAATCAATCATGTCAGTACAAA 57.934 29.630 0.00 0.00 39.58 2.83
767 771 8.620116 TCAAGAAATCAATCATGTCAGTACAA 57.380 30.769 0.00 0.00 39.58 2.41
768 772 8.096414 TCTCAAGAAATCAATCATGTCAGTACA 58.904 33.333 0.00 0.00 40.69 2.90
769 773 8.484641 TCTCAAGAAATCAATCATGTCAGTAC 57.515 34.615 0.00 0.00 0.00 2.73
770 774 7.279536 GCTCTCAAGAAATCAATCATGTCAGTA 59.720 37.037 0.00 0.00 0.00 2.74
771 775 6.093771 GCTCTCAAGAAATCAATCATGTCAGT 59.906 38.462 0.00 0.00 0.00 3.41
772 776 6.316640 AGCTCTCAAGAAATCAATCATGTCAG 59.683 38.462 0.00 0.00 0.00 3.51
773 777 6.178324 AGCTCTCAAGAAATCAATCATGTCA 58.822 36.000 0.00 0.00 0.00 3.58
774 778 6.680874 AGCTCTCAAGAAATCAATCATGTC 57.319 37.500 0.00 0.00 0.00 3.06
775 779 7.337167 ACTAGCTCTCAAGAAATCAATCATGT 58.663 34.615 0.00 0.00 0.00 3.21
776 780 7.789273 ACTAGCTCTCAAGAAATCAATCATG 57.211 36.000 0.00 0.00 0.00 3.07
777 781 9.896645 TTTACTAGCTCTCAAGAAATCAATCAT 57.103 29.630 0.00 0.00 0.00 2.45
778 782 9.725019 TTTTACTAGCTCTCAAGAAATCAATCA 57.275 29.630 0.00 0.00 0.00 2.57
780 784 9.950496 TCTTTTACTAGCTCTCAAGAAATCAAT 57.050 29.630 0.00 0.00 0.00 2.57
781 785 9.778741 TTCTTTTACTAGCTCTCAAGAAATCAA 57.221 29.630 0.00 0.00 29.46 2.57
782 786 9.778741 TTTCTTTTACTAGCTCTCAAGAAATCA 57.221 29.630 11.99 0.00 36.04 2.57
785 789 8.548721 CGTTTTCTTTTACTAGCTCTCAAGAAA 58.451 33.333 11.99 11.99 38.08 2.52
786 790 7.709613 ACGTTTTCTTTTACTAGCTCTCAAGAA 59.290 33.333 0.00 0.00 0.00 2.52
787 791 7.208080 ACGTTTTCTTTTACTAGCTCTCAAGA 58.792 34.615 0.00 0.00 0.00 3.02
788 792 7.409465 ACGTTTTCTTTTACTAGCTCTCAAG 57.591 36.000 0.00 0.00 0.00 3.02
789 793 7.781548 AACGTTTTCTTTTACTAGCTCTCAA 57.218 32.000 0.00 0.00 0.00 3.02
790 794 7.627340 CAAACGTTTTCTTTTACTAGCTCTCA 58.373 34.615 11.66 0.00 0.00 3.27
791 795 6.574093 GCAAACGTTTTCTTTTACTAGCTCTC 59.426 38.462 11.66 0.00 0.00 3.20
792 796 6.037830 TGCAAACGTTTTCTTTTACTAGCTCT 59.962 34.615 11.66 0.00 0.00 4.09
793 797 6.196571 TGCAAACGTTTTCTTTTACTAGCTC 58.803 36.000 11.66 0.00 0.00 4.09
794 798 6.126568 TGCAAACGTTTTCTTTTACTAGCT 57.873 33.333 11.66 0.00 0.00 3.32
795 799 6.986424 ATGCAAACGTTTTCTTTTACTAGC 57.014 33.333 11.66 8.17 0.00 3.42
796 800 9.872757 TCTTATGCAAACGTTTTCTTTTACTAG 57.127 29.630 11.66 0.00 0.00 2.57
797 801 9.654417 GTCTTATGCAAACGTTTTCTTTTACTA 57.346 29.630 11.66 0.00 0.00 1.82
798 802 8.403236 AGTCTTATGCAAACGTTTTCTTTTACT 58.597 29.630 11.66 7.20 0.00 2.24
799 803 8.469125 CAGTCTTATGCAAACGTTTTCTTTTAC 58.531 33.333 11.66 5.04 0.00 2.01
800 804 7.166804 GCAGTCTTATGCAAACGTTTTCTTTTA 59.833 33.333 11.66 0.00 45.77 1.52
801 805 6.019881 GCAGTCTTATGCAAACGTTTTCTTTT 60.020 34.615 11.66 0.00 45.77 2.27
802 806 5.458779 GCAGTCTTATGCAAACGTTTTCTTT 59.541 36.000 11.66 1.55 45.77 2.52
803 807 4.976116 GCAGTCTTATGCAAACGTTTTCTT 59.024 37.500 11.66 7.55 45.77 2.52
804 808 4.537015 GCAGTCTTATGCAAACGTTTTCT 58.463 39.130 11.66 1.41 45.77 2.52
805 809 3.357823 CGCAGTCTTATGCAAACGTTTTC 59.642 43.478 11.66 7.34 46.87 2.29
806 810 3.242936 ACGCAGTCTTATGCAAACGTTTT 60.243 39.130 11.66 0.00 46.87 2.43
807 811 2.289547 ACGCAGTCTTATGCAAACGTTT 59.710 40.909 7.96 7.96 46.87 3.60
808 812 1.871039 ACGCAGTCTTATGCAAACGTT 59.129 42.857 0.00 0.00 46.87 3.99
809 813 1.508632 ACGCAGTCTTATGCAAACGT 58.491 45.000 0.00 0.00 46.87 3.99
810 814 2.534939 GCTACGCAGTCTTATGCAAACG 60.535 50.000 0.00 0.00 46.87 3.60
811 815 2.673368 AGCTACGCAGTCTTATGCAAAC 59.327 45.455 0.00 0.00 46.87 2.93
812 816 2.672874 CAGCTACGCAGTCTTATGCAAA 59.327 45.455 0.00 0.00 46.87 3.68
813 817 2.270923 CAGCTACGCAGTCTTATGCAA 58.729 47.619 0.00 0.00 46.87 4.08
814 818 1.204704 ACAGCTACGCAGTCTTATGCA 59.795 47.619 0.00 0.00 46.87 3.96
815 819 1.927895 ACAGCTACGCAGTCTTATGC 58.072 50.000 0.00 0.00 43.93 3.14
816 820 3.046390 GCTACAGCTACGCAGTCTTATG 58.954 50.000 0.00 0.00 43.93 1.90
817 821 2.688446 TGCTACAGCTACGCAGTCTTAT 59.312 45.455 2.44 0.00 38.15 1.73
818 822 2.089201 TGCTACAGCTACGCAGTCTTA 58.911 47.619 2.44 0.00 38.15 2.10
819 823 0.888619 TGCTACAGCTACGCAGTCTT 59.111 50.000 2.44 0.00 38.15 3.01
820 824 1.107114 ATGCTACAGCTACGCAGTCT 58.893 50.000 9.23 0.00 38.15 3.24
821 825 1.927895 AATGCTACAGCTACGCAGTC 58.072 50.000 9.23 0.00 38.15 3.51
822 826 2.386661 AAATGCTACAGCTACGCAGT 57.613 45.000 9.23 4.46 42.66 4.40
823 827 3.747099 AAAAATGCTACAGCTACGCAG 57.253 42.857 9.23 0.00 42.66 5.18
824 828 4.250464 AGTAAAAATGCTACAGCTACGCA 58.750 39.130 6.26 6.26 42.66 5.24
825 829 4.859629 AGTAAAAATGCTACAGCTACGC 57.140 40.909 2.44 0.00 42.66 4.42
826 830 7.274904 TCACTAAGTAAAAATGCTACAGCTACG 59.725 37.037 2.44 0.00 42.66 3.51
827 831 8.475331 TCACTAAGTAAAAATGCTACAGCTAC 57.525 34.615 2.44 0.00 42.66 3.58
828 832 8.311836 ACTCACTAAGTAAAAATGCTACAGCTA 58.688 33.333 2.44 0.00 38.06 3.32
829 833 7.118390 CACTCACTAAGTAAAAATGCTACAGCT 59.882 37.037 2.44 0.00 38.06 4.24
830 834 7.117812 TCACTCACTAAGTAAAAATGCTACAGC 59.882 37.037 0.00 0.00 36.07 4.40
831 835 8.534333 TCACTCACTAAGTAAAAATGCTACAG 57.466 34.615 0.00 0.00 36.07 2.74
832 836 8.896320 TTCACTCACTAAGTAAAAATGCTACA 57.104 30.769 0.00 0.00 36.07 2.74
833 837 8.989980 ACTTCACTCACTAAGTAAAAATGCTAC 58.010 33.333 0.00 0.00 36.07 3.58
834 838 8.988934 CACTTCACTCACTAAGTAAAAATGCTA 58.011 33.333 0.00 0.00 36.07 3.49
835 839 7.715249 TCACTTCACTCACTAAGTAAAAATGCT 59.285 33.333 0.00 0.00 36.07 3.79
836 840 7.861630 TCACTTCACTCACTAAGTAAAAATGC 58.138 34.615 0.00 0.00 36.07 3.56
837 841 8.499162 CCTCACTTCACTCACTAAGTAAAAATG 58.501 37.037 0.00 0.00 36.07 2.32
838 842 8.211629 ACCTCACTTCACTCACTAAGTAAAAAT 58.788 33.333 0.00 0.00 36.07 1.82
839 843 7.562135 ACCTCACTTCACTCACTAAGTAAAAA 58.438 34.615 0.00 0.00 36.07 1.94
840 844 7.120923 ACCTCACTTCACTCACTAAGTAAAA 57.879 36.000 0.00 0.00 36.07 1.52
841 845 6.322969 TGACCTCACTTCACTCACTAAGTAAA 59.677 38.462 0.00 0.00 36.07 2.01
842 846 5.831525 TGACCTCACTTCACTCACTAAGTAA 59.168 40.000 0.00 0.00 36.07 2.24
843 847 5.382616 TGACCTCACTTCACTCACTAAGTA 58.617 41.667 0.00 0.00 36.07 2.24
844 848 4.215908 TGACCTCACTTCACTCACTAAGT 58.784 43.478 0.00 0.00 39.44 2.24
845 849 4.855715 TGACCTCACTTCACTCACTAAG 57.144 45.455 0.00 0.00 0.00 2.18
846 850 4.649674 ACTTGACCTCACTTCACTCACTAA 59.350 41.667 0.00 0.00 0.00 2.24
847 851 4.215908 ACTTGACCTCACTTCACTCACTA 58.784 43.478 0.00 0.00 0.00 2.74
848 852 3.034635 ACTTGACCTCACTTCACTCACT 58.965 45.455 0.00 0.00 0.00 3.41
849 853 3.385577 GACTTGACCTCACTTCACTCAC 58.614 50.000 0.00 0.00 0.00 3.51
850 854 2.365617 GGACTTGACCTCACTTCACTCA 59.634 50.000 0.00 0.00 0.00 3.41
851 855 2.365617 TGGACTTGACCTCACTTCACTC 59.634 50.000 0.00 0.00 0.00 3.51
852 856 2.366916 CTGGACTTGACCTCACTTCACT 59.633 50.000 0.00 0.00 0.00 3.41
853 857 2.548920 CCTGGACTTGACCTCACTTCAC 60.549 54.545 0.00 0.00 0.00 3.18
854 858 1.694150 CCTGGACTTGACCTCACTTCA 59.306 52.381 0.00 0.00 0.00 3.02
855 859 1.609320 GCCTGGACTTGACCTCACTTC 60.609 57.143 0.00 0.00 0.00 3.01
856 860 0.398318 GCCTGGACTTGACCTCACTT 59.602 55.000 0.00 0.00 0.00 3.16
857 861 1.821061 CGCCTGGACTTGACCTCACT 61.821 60.000 0.00 0.00 0.00 3.41
858 862 1.374758 CGCCTGGACTTGACCTCAC 60.375 63.158 0.00 0.00 0.00 3.51
859 863 2.583441 CCGCCTGGACTTGACCTCA 61.583 63.158 0.00 0.00 37.49 3.86
860 864 2.266055 CCGCCTGGACTTGACCTC 59.734 66.667 0.00 0.00 37.49 3.85
861 865 4.021925 GCCGCCTGGACTTGACCT 62.022 66.667 0.00 0.00 37.49 3.85
865 869 4.473520 ATCCGCCGCCTGGACTTG 62.474 66.667 0.00 0.00 38.60 3.16
866 870 4.162690 GATCCGCCGCCTGGACTT 62.163 66.667 0.00 0.00 38.60 3.01
868 872 4.899239 CAGATCCGCCGCCTGGAC 62.899 72.222 0.00 0.00 38.60 4.02
874 878 4.615815 AGATGCCAGATCCGCCGC 62.616 66.667 0.23 0.00 0.00 6.53
875 879 2.356793 GAGATGCCAGATCCGCCG 60.357 66.667 0.23 0.00 0.00 6.46
876 880 2.356793 CGAGATGCCAGATCCGCC 60.357 66.667 0.23 0.00 0.00 6.13
877 881 3.040763 GCGAGATGCCAGATCCGC 61.041 66.667 0.00 0.00 37.76 5.54
886 890 0.248784 GGATTGCTTTGGCGAGATGC 60.249 55.000 0.00 0.00 42.25 3.91
887 891 0.383231 GGGATTGCTTTGGCGAGATG 59.617 55.000 0.00 0.00 42.25 2.90
888 892 0.753111 GGGGATTGCTTTGGCGAGAT 60.753 55.000 0.00 0.00 42.25 2.75
889 893 1.378514 GGGGATTGCTTTGGCGAGA 60.379 57.895 0.00 0.00 42.25 4.04
890 894 1.379044 AGGGGATTGCTTTGGCGAG 60.379 57.895 0.00 0.00 42.25 5.03
891 895 1.378514 GAGGGGATTGCTTTGGCGA 60.379 57.895 0.00 0.00 42.25 5.54
892 896 2.764314 CGAGGGGATTGCTTTGGCG 61.764 63.158 0.00 0.00 42.25 5.69
893 897 3.068729 GCGAGGGGATTGCTTTGGC 62.069 63.158 0.00 0.00 35.18 4.52
894 898 3.200522 GCGAGGGGATTGCTTTGG 58.799 61.111 0.00 0.00 35.18 3.28
899 903 1.069935 GAGGTAGCGAGGGGATTGC 59.930 63.158 0.00 0.00 38.78 3.56
900 904 1.364171 CGAGGTAGCGAGGGGATTG 59.636 63.158 0.00 0.00 0.00 2.67
901 905 2.499827 GCGAGGTAGCGAGGGGATT 61.500 63.158 0.00 0.00 0.00 3.01
902 906 2.913060 GCGAGGTAGCGAGGGGAT 60.913 66.667 0.00 0.00 0.00 3.85
907 911 4.914420 CAGCGGCGAGGTAGCGAG 62.914 72.222 12.98 0.00 38.18 5.03
915 919 4.827087 AGATGTGGCAGCGGCGAG 62.827 66.667 12.98 2.55 42.47 5.03
916 920 4.819761 GAGATGTGGCAGCGGCGA 62.820 66.667 12.98 0.00 42.47 5.54
943 947 2.221906 TTTAGTCGGCGGAGAGGTGC 62.222 60.000 7.21 0.00 0.00 5.01
944 948 0.460311 ATTTAGTCGGCGGAGAGGTG 59.540 55.000 7.21 0.00 0.00 4.00
945 949 0.745468 GATTTAGTCGGCGGAGAGGT 59.255 55.000 7.21 0.00 0.00 3.85
946 950 0.744874 TGATTTAGTCGGCGGAGAGG 59.255 55.000 7.21 0.00 0.00 3.69
947 951 1.536284 GGTGATTTAGTCGGCGGAGAG 60.536 57.143 7.21 0.00 0.00 3.20
948 952 0.458669 GGTGATTTAGTCGGCGGAGA 59.541 55.000 7.21 0.00 0.00 3.71
949 953 0.529992 GGGTGATTTAGTCGGCGGAG 60.530 60.000 7.21 0.00 0.00 4.63
950 954 1.259142 TGGGTGATTTAGTCGGCGGA 61.259 55.000 7.21 0.00 0.00 5.54
951 955 0.179056 ATGGGTGATTTAGTCGGCGG 60.179 55.000 7.21 0.00 0.00 6.13
952 956 1.330521 CAATGGGTGATTTAGTCGGCG 59.669 52.381 0.00 0.00 0.00 6.46
953 957 2.614057 CTCAATGGGTGATTTAGTCGGC 59.386 50.000 0.00 0.00 35.07 5.54
954 958 4.122776 CTCTCAATGGGTGATTTAGTCGG 58.877 47.826 0.00 0.00 35.07 4.79
955 959 4.122776 CCTCTCAATGGGTGATTTAGTCG 58.877 47.826 0.00 0.00 35.07 4.18
956 960 5.359194 TCCTCTCAATGGGTGATTTAGTC 57.641 43.478 0.00 0.00 35.07 2.59
957 961 4.384647 GCTCCTCTCAATGGGTGATTTAGT 60.385 45.833 0.00 0.00 35.07 2.24
958 962 4.133078 GCTCCTCTCAATGGGTGATTTAG 58.867 47.826 0.00 0.00 35.07 1.85
959 963 3.782523 AGCTCCTCTCAATGGGTGATTTA 59.217 43.478 0.00 0.00 35.07 1.40
1006 1010 2.970576 GAGACATCTCCGCTCTTGC 58.029 57.895 0.00 0.00 37.02 4.01
1204 1211 1.675641 GAGGCTTGCCGTGGTGATT 60.676 57.895 5.95 0.00 0.00 2.57
1206 1216 4.329545 GGAGGCTTGCCGTGGTGA 62.330 66.667 5.95 0.00 0.00 4.02
1510 5461 2.320587 CCGCTGCGTTGAAGAAGCT 61.321 57.895 21.59 0.00 40.65 3.74
1584 5568 1.895131 AGGCATGCGGAAAATCTTGTT 59.105 42.857 12.44 0.00 0.00 2.83
1684 5677 7.255486 GCATAGGGAATTACCAATCAAAGTACC 60.255 40.741 10.06 0.00 41.20 3.34
1698 5691 5.454187 CCGAAGTAACCAGCATAGGGAATTA 60.454 44.000 0.00 0.00 0.00 1.40
1707 5700 0.676782 GCACCCGAAGTAACCAGCAT 60.677 55.000 0.00 0.00 0.00 3.79
1727 5732 4.716784 ACTCAAGTATGGCATAGTGAGGAA 59.283 41.667 31.75 13.49 34.61 3.36
1840 6838 0.333993 ACATGGATGAAGCCAAGCCT 59.666 50.000 0.00 0.00 42.16 4.58
1863 6866 3.071312 TCCATAATTGGGCATGGAATTGC 59.929 43.478 5.36 0.00 46.03 3.56
1896 6902 2.086869 ACAGCCAAACCATCAGAATCG 58.913 47.619 0.00 0.00 0.00 3.34
1992 7010 1.470979 GCATTACTCTCCTCGGCGAAA 60.471 52.381 12.13 0.00 0.00 3.46
2146 7164 3.113260 ACACTGTGAAGTAGTGAAGGC 57.887 47.619 15.86 0.00 46.52 4.35
2147 7165 7.375834 TGTATAACACTGTGAAGTAGTGAAGG 58.624 38.462 15.86 0.00 46.52 3.46
2148 7166 8.988064 ATGTATAACACTGTGAAGTAGTGAAG 57.012 34.615 15.86 0.00 46.52 3.02
2581 7913 1.468565 CGAAATTCCCGCGAGAGTACA 60.469 52.381 8.23 0.00 0.00 2.90
2600 7960 6.089016 CGGCAGTACTGAATATTACCATAACG 59.911 42.308 27.08 1.99 0.00 3.18
2660 8045 6.601217 AGCTTCCATTAAGTTCTCTTCCATTC 59.399 38.462 0.00 0.00 37.53 2.67
2884 8342 6.006275 AGAGGTGCATGGTTATGTAATCTT 57.994 37.500 0.00 0.00 36.65 2.40
3212 8694 3.062122 AGTGGGTGGGTACAAATTACG 57.938 47.619 0.00 0.00 0.00 3.18
3223 8705 0.988832 TAGGCAAAGTAGTGGGTGGG 59.011 55.000 0.00 0.00 0.00 4.61
3224 8706 2.039879 ACTTAGGCAAAGTAGTGGGTGG 59.960 50.000 2.09 0.00 46.85 4.61
3247 8730 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3299 8782 9.063615 CCCTCCGTAAACTAATATAAAAGCATT 57.936 33.333 0.00 0.00 0.00 3.56
3300 8783 8.434392 TCCCTCCGTAAACTAATATAAAAGCAT 58.566 33.333 0.00 0.00 0.00 3.79
3301 8784 7.794041 TCCCTCCGTAAACTAATATAAAAGCA 58.206 34.615 0.00 0.00 0.00 3.91
3302 8785 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
3308 8791 9.151177 TCAATTACTCCCTCCGTAAACTAATAT 57.849 33.333 0.00 0.00 31.36 1.28
3309 8792 8.537728 TCAATTACTCCCTCCGTAAACTAATA 57.462 34.615 0.00 0.00 31.36 0.98
3310 8793 7.427989 TCAATTACTCCCTCCGTAAACTAAT 57.572 36.000 0.00 0.00 31.36 1.73
3311 8794 6.855763 TCAATTACTCCCTCCGTAAACTAA 57.144 37.500 0.00 0.00 31.36 2.24
3312 8795 8.537728 TTATCAATTACTCCCTCCGTAAACTA 57.462 34.615 0.00 0.00 31.36 2.24
3313 8796 5.952347 ATCAATTACTCCCTCCGTAAACT 57.048 39.130 0.00 0.00 31.36 2.66
3314 8797 8.672823 AATTATCAATTACTCCCTCCGTAAAC 57.327 34.615 0.00 0.00 31.36 2.01
3315 8798 9.991906 CTAATTATCAATTACTCCCTCCGTAAA 57.008 33.333 0.00 0.00 31.36 2.01
3316 8799 9.370930 TCTAATTATCAATTACTCCCTCCGTAA 57.629 33.333 0.00 0.00 32.38 3.18
3317 8800 8.945195 TCTAATTATCAATTACTCCCTCCGTA 57.055 34.615 0.00 0.00 32.38 4.02
3318 8801 7.850935 TCTAATTATCAATTACTCCCTCCGT 57.149 36.000 0.00 0.00 32.38 4.69
3384 8876 5.542779 ACTTAGAAGTGTGTGCTAAGGAAG 58.457 41.667 0.00 0.00 43.24 3.46
3645 9149 7.007313 CCATTTTATAACTTTGCATGGCTTG 57.993 36.000 0.00 0.00 0.00 4.01
3678 9182 9.090692 CATAAAATAACATTTCTTTCAGCCCAG 57.909 33.333 0.00 0.00 0.00 4.45
3930 11941 1.152030 AGGCTGTTCCCAGGACTCA 60.152 57.895 0.00 0.00 39.22 3.41
3998 12009 2.933834 AAGGTCCGGGGAAGGGTG 60.934 66.667 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.