Multiple sequence alignment - TraesCS3B01G480500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G480500 chr3B 100.000 4186 0 0 1 4186 728586969 728582784 0.000000e+00 7731.0
1 TraesCS3B01G480500 chr3B 82.545 1289 157 39 1106 2356 728890753 728889495 0.000000e+00 1072.0
2 TraesCS3B01G480500 chr3B 83.245 1128 132 29 1167 2272 728754008 728752916 0.000000e+00 983.0
3 TraesCS3B01G480500 chr3B 81.140 1246 179 28 1109 2319 727786514 727787738 0.000000e+00 948.0
4 TraesCS3B01G480500 chr3B 80.110 1272 181 34 1113 2356 727740593 727741820 0.000000e+00 881.0
5 TraesCS3B01G480500 chr3B 87.003 654 48 17 3188 3813 45486295 45485651 0.000000e+00 702.0
6 TraesCS3B01G480500 chr3B 81.034 754 110 19 1506 2247 727794137 727794869 1.690000e-158 569.0
7 TraesCS3B01G480500 chr3B 80.000 820 107 33 2827 3627 605911058 605910277 1.700000e-153 553.0
8 TraesCS3B01G480500 chr3B 77.894 959 150 45 1412 2356 728617857 728616947 1.320000e-149 540.0
9 TraesCS3B01G480500 chr3B 87.324 355 32 10 3463 3813 803885305 803884960 1.090000e-105 394.0
10 TraesCS3B01G480500 chr3B 77.370 654 96 28 2825 3457 727742306 727742928 1.440000e-89 340.0
11 TraesCS3B01G480500 chr3B 81.818 286 45 4 2398 2679 605911440 605911158 2.520000e-57 233.0
12 TraesCS3B01G480500 chr3B 83.721 129 17 2 2825 2949 727795119 727795247 7.350000e-23 119.0
13 TraesCS3B01G480500 chr3D 96.010 1178 47 0 1159 2336 549074044 549072867 0.000000e+00 1916.0
14 TraesCS3B01G480500 chr3D 92.169 779 40 9 2763 3534 549066737 549065973 0.000000e+00 1081.0
15 TraesCS3B01G480500 chr3D 83.180 1195 144 31 1084 2262 549468040 549466887 0.000000e+00 1040.0
16 TraesCS3B01G480500 chr3D 81.522 1288 185 26 1089 2356 458885980 458884726 0.000000e+00 1011.0
17 TraesCS3B01G480500 chr3D 81.663 1287 164 43 1109 2353 548725546 548726802 0.000000e+00 1003.0
18 TraesCS3B01G480500 chr3D 81.691 1218 153 29 1167 2356 549127177 549126002 0.000000e+00 950.0
19 TraesCS3B01G480500 chr3D 80.660 1272 175 35 1113 2356 548694331 548695559 0.000000e+00 920.0
20 TraesCS3B01G480500 chr3D 95.088 570 19 4 284 845 418674698 418674130 0.000000e+00 889.0
21 TraesCS3B01G480500 chr3D 79.339 1302 194 40 1087 2355 548711703 548712962 0.000000e+00 845.0
22 TraesCS3B01G480500 chr3D 80.764 811 111 26 2827 3627 458884233 458883458 3.600000e-165 592.0
23 TraesCS3B01G480500 chr3D 79.853 819 126 22 2825 3630 549108148 549107356 2.830000e-156 562.0
24 TraesCS3B01G480500 chr3D 78.745 701 96 31 2961 3627 548706115 548706796 1.800000e-113 420.0
25 TraesCS3B01G480500 chr3D 92.537 268 18 2 1 267 549075039 549074773 2.360000e-102 383.0
26 TraesCS3B01G480500 chr3D 90.795 239 21 1 2390 2627 549067187 549066949 6.750000e-83 318.0
27 TraesCS3B01G480500 chr3D 88.889 198 20 1 845 1042 549074748 549074553 4.180000e-60 243.0
28 TraesCS3B01G480500 chr3D 82.069 290 44 5 2398 2683 458884614 458884329 1.500000e-59 241.0
29 TraesCS3B01G480500 chr3D 88.265 196 17 4 3871 4066 549065618 549065429 3.260000e-56 230.0
30 TraesCS3B01G480500 chr3D 80.731 301 47 7 2388 2683 549463969 549463675 1.510000e-54 224.0
31 TraesCS3B01G480500 chr3D 93.617 94 6 0 2678 2771 208025534 208025441 1.570000e-29 141.0
32 TraesCS3B01G480500 chr3D 88.060 67 6 2 4039 4105 124616863 124616799 1.250000e-10 78.7
33 TraesCS3B01G480500 chr3A 88.372 1032 96 15 2809 3825 686549001 686547979 0.000000e+00 1219.0
34 TraesCS3B01G480500 chr3A 93.431 822 36 9 1076 1897 686551665 686550862 0.000000e+00 1203.0
35 TraesCS3B01G480500 chr3A 82.656 1280 154 43 1106 2356 686749865 686748625 0.000000e+00 1072.0
36 TraesCS3B01G480500 chr3A 81.444 1288 168 40 1109 2354 686189708 686190966 0.000000e+00 989.0
37 TraesCS3B01G480500 chr3A 93.148 467 31 1 1891 2357 686549887 686549422 0.000000e+00 684.0
38 TraesCS3B01G480500 chr3A 81.886 806 92 31 2830 3615 686708846 686708075 7.640000e-177 630.0
39 TraesCS3B01G480500 chr3A 80.732 820 111 25 2825 3630 686583543 686582757 2.790000e-166 595.0
40 TraesCS3B01G480500 chr3A 92.308 299 20 2 2388 2683 686549323 686549025 5.000000e-114 422.0
41 TraesCS3B01G480500 chr3A 80.328 549 87 16 3088 3627 601131961 601131425 3.030000e-106 396.0
42 TraesCS3B01G480500 chr3A 88.718 195 15 5 3871 4064 686547975 686547787 9.050000e-57 231.0
43 TraesCS3B01G480500 chr3A 80.822 292 46 7 2398 2683 601132629 601132342 1.960000e-53 220.0
44 TraesCS3B01G480500 chr3A 87.742 155 17 2 880 1033 686551823 686551670 3.330000e-41 180.0
45 TraesCS3B01G480500 chr3A 75.932 295 40 15 2394 2683 686533812 686533544 5.680000e-24 122.0
46 TraesCS3B01G480500 chr3A 100.000 36 0 0 2353 2388 686549377 686549342 2.700000e-07 67.6
47 TraesCS3B01G480500 chr7B 82.033 1269 176 34 1118 2356 543186975 543188221 0.000000e+00 1033.0
48 TraesCS3B01G480500 chr7B 95.455 572 17 5 284 847 380253029 380252459 0.000000e+00 904.0
49 TraesCS3B01G480500 chr7B 87.634 655 45 16 3188 3813 596463078 596462431 0.000000e+00 728.0
50 TraesCS3B01G480500 chr7B 85.556 450 40 12 3382 3813 650204378 650203936 8.260000e-122 448.0
51 TraesCS3B01G480500 chr7B 87.115 357 33 10 3463 3813 610657317 610656968 3.920000e-105 392.0
52 TraesCS3B01G480500 chr7B 91.282 195 14 3 3871 4065 596462410 596462219 3.210000e-66 263.0
53 TraesCS3B01G480500 chr7B 90.306 196 16 3 3871 4066 654454518 654454710 1.930000e-63 254.0
54 TraesCS3B01G480500 chr7B 90.306 196 16 3 3871 4066 654520725 654520917 1.930000e-63 254.0
55 TraesCS3B01G480500 chr6D 96.309 569 14 4 284 845 425934799 425934231 0.000000e+00 928.0
56 TraesCS3B01G480500 chr6D 89.720 107 7 3 2661 2766 399221345 399221448 2.630000e-27 134.0
57 TraesCS3B01G480500 chr6D 96.226 53 1 1 4054 4105 169716342 169716394 7.460000e-13 86.1
58 TraesCS3B01G480500 chr6D 96.154 52 2 0 4056 4107 469492332 469492383 7.460000e-13 86.1
59 TraesCS3B01G480500 chr6D 96.154 52 2 0 4056 4107 469511140 469511191 7.460000e-13 86.1
60 TraesCS3B01G480500 chr6D 100.000 30 0 0 1 30 216769490 216769519 5.850000e-04 56.5
61 TraesCS3B01G480500 chr5D 95.797 571 16 3 284 846 266646244 266645674 0.000000e+00 915.0
62 TraesCS3B01G480500 chr5D 97.590 83 2 0 2682 2764 42863804 42863722 4.360000e-30 143.0
63 TraesCS3B01G480500 chr7D 95.789 570 15 4 284 845 390481550 390482118 0.000000e+00 911.0
64 TraesCS3B01G480500 chr7D 95.122 574 20 3 280 845 467375903 467376476 0.000000e+00 898.0
65 TraesCS3B01G480500 chr7D 95.506 89 4 0 2676 2764 81910951 81911039 4.360000e-30 143.0
66 TraesCS3B01G480500 chr7D 95.506 89 4 0 2676 2764 375817137 375817225 4.360000e-30 143.0
67 TraesCS3B01G480500 chr1B 95.789 570 15 5 284 845 585509914 585509346 0.000000e+00 911.0
68 TraesCS3B01G480500 chr5A 95.079 569 19 4 284 845 431640689 431640123 0.000000e+00 887.0
69 TraesCS3B01G480500 chr2D 94.792 576 19 4 283 847 468614760 468615335 0.000000e+00 887.0
70 TraesCS3B01G480500 chr2D 96.591 88 3 0 2679 2766 242076894 242076807 3.370000e-31 147.0
71 TraesCS3B01G480500 chr2D 96.591 88 3 0 2679 2766 242200608 242200695 3.370000e-31 147.0
72 TraesCS3B01G480500 chr5B 87.596 653 47 14 3188 3813 332839235 332838590 0.000000e+00 726.0
73 TraesCS3B01G480500 chrUn 87.309 654 48 16 3188 3813 361110363 361109717 0.000000e+00 715.0
74 TraesCS3B01G480500 chr6B 87.597 645 44 18 3188 3804 49999324 49999960 0.000000e+00 715.0
75 TraesCS3B01G480500 chr6B 79.297 256 35 13 4 246 118954515 118954265 3.350000e-36 163.0
76 TraesCS3B01G480500 chr6B 80.147 136 17 8 1 127 72885406 72885540 4.460000e-15 93.5
77 TraesCS3B01G480500 chr2B 87.442 645 46 15 3188 3804 573825879 573826516 0.000000e+00 710.0
78 TraesCS3B01G480500 chr2B 81.868 182 30 3 80 259 121439180 121439000 2.610000e-32 150.0
79 TraesCS3B01G480500 chr2B 94.545 55 2 1 4052 4105 68332844 68332898 2.680000e-12 84.2
80 TraesCS3B01G480500 chr4B 87.037 648 48 18 3194 3813 648897331 648896692 0.000000e+00 699.0
81 TraesCS3B01G480500 chr4B 90.769 195 15 3 3871 4065 648896671 648896480 1.490000e-64 257.0
82 TraesCS3B01G480500 chr4B 96.512 86 3 0 2681 2766 247284708 247284623 4.360000e-30 143.0
83 TraesCS3B01G480500 chr6A 83.955 268 32 8 1 258 8866849 8866583 3.230000e-61 246.0
84 TraesCS3B01G480500 chr6A 96.296 54 1 1 4053 4105 190660445 190660392 2.070000e-13 87.9
85 TraesCS3B01G480500 chr6A 96.296 54 1 1 4053 4105 190738368 190738315 2.070000e-13 87.9
86 TraesCS3B01G480500 chr1A 85.789 190 24 3 60 247 266878823 266879011 9.180000e-47 198.0
87 TraesCS3B01G480500 chr4A 84.577 201 27 4 60 258 30166168 30165970 3.300000e-46 196.0
88 TraesCS3B01G480500 chr2A 97.727 88 2 0 2679 2766 297766487 297766574 7.250000e-33 152.0
89 TraesCS3B01G480500 chr2A 89.231 65 5 2 4043 4106 690525456 690525519 3.470000e-11 80.5
90 TraesCS3B01G480500 chr1D 77.966 236 34 11 7 225 328388324 328388090 9.440000e-27 132.0
91 TraesCS3B01G480500 chr1D 88.060 67 5 2 4060 4124 326480030 326479965 4.490000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G480500 chr3B 728582784 728586969 4185 True 7731.000000 7731 100.000000 1 4186 1 chr3B.!!$R2 4185
1 TraesCS3B01G480500 chr3B 728889495 728890753 1258 True 1072.000000 1072 82.545000 1106 2356 1 chr3B.!!$R5 1250
2 TraesCS3B01G480500 chr3B 728752916 728754008 1092 True 983.000000 983 83.245000 1167 2272 1 chr3B.!!$R4 1105
3 TraesCS3B01G480500 chr3B 727786514 727787738 1224 False 948.000000 948 81.140000 1109 2319 1 chr3B.!!$F1 1210
4 TraesCS3B01G480500 chr3B 45485651 45486295 644 True 702.000000 702 87.003000 3188 3813 1 chr3B.!!$R1 625
5 TraesCS3B01G480500 chr3B 727740593 727742928 2335 False 610.500000 881 78.740000 1113 3457 2 chr3B.!!$F2 2344
6 TraesCS3B01G480500 chr3B 728616947 728617857 910 True 540.000000 540 77.894000 1412 2356 1 chr3B.!!$R3 944
7 TraesCS3B01G480500 chr3B 605910277 605911440 1163 True 393.000000 553 80.909000 2398 3627 2 chr3B.!!$R7 1229
8 TraesCS3B01G480500 chr3B 727794137 727795247 1110 False 344.000000 569 82.377500 1506 2949 2 chr3B.!!$F3 1443
9 TraesCS3B01G480500 chr3D 548725546 548726802 1256 False 1003.000000 1003 81.663000 1109 2353 1 chr3D.!!$F4 1244
10 TraesCS3B01G480500 chr3D 549126002 549127177 1175 True 950.000000 950 81.691000 1167 2356 1 chr3D.!!$R5 1189
11 TraesCS3B01G480500 chr3D 548694331 548695559 1228 False 920.000000 920 80.660000 1113 2356 1 chr3D.!!$F1 1243
12 TraesCS3B01G480500 chr3D 418674130 418674698 568 True 889.000000 889 95.088000 284 845 1 chr3D.!!$R3 561
13 TraesCS3B01G480500 chr3D 549072867 549075039 2172 True 847.333333 1916 92.478667 1 2336 3 chr3D.!!$R8 2335
14 TraesCS3B01G480500 chr3D 548711703 548712962 1259 False 845.000000 845 79.339000 1087 2355 1 chr3D.!!$F3 1268
15 TraesCS3B01G480500 chr3D 549463675 549468040 4365 True 632.000000 1040 81.955500 1084 2683 2 chr3D.!!$R9 1599
16 TraesCS3B01G480500 chr3D 458883458 458885980 2522 True 614.666667 1011 81.451667 1089 3627 3 chr3D.!!$R6 2538
17 TraesCS3B01G480500 chr3D 549107356 549108148 792 True 562.000000 562 79.853000 2825 3630 1 chr3D.!!$R4 805
18 TraesCS3B01G480500 chr3D 549065429 549067187 1758 True 543.000000 1081 90.409667 2390 4066 3 chr3D.!!$R7 1676
19 TraesCS3B01G480500 chr3D 548706115 548706796 681 False 420.000000 420 78.745000 2961 3627 1 chr3D.!!$F2 666
20 TraesCS3B01G480500 chr3A 686748625 686749865 1240 True 1072.000000 1072 82.656000 1106 2356 1 chr3A.!!$R4 1250
21 TraesCS3B01G480500 chr3A 686189708 686190966 1258 False 989.000000 989 81.444000 1109 2354 1 chr3A.!!$F1 1245
22 TraesCS3B01G480500 chr3A 686708075 686708846 771 True 630.000000 630 81.886000 2830 3615 1 chr3A.!!$R3 785
23 TraesCS3B01G480500 chr3A 686582757 686583543 786 True 595.000000 595 80.732000 2825 3630 1 chr3A.!!$R2 805
24 TraesCS3B01G480500 chr3A 686547787 686551823 4036 True 572.371429 1219 91.959857 880 4064 7 chr3A.!!$R6 3184
25 TraesCS3B01G480500 chr3A 601131425 601132629 1204 True 308.000000 396 80.575000 2398 3627 2 chr3A.!!$R5 1229
26 TraesCS3B01G480500 chr7B 543186975 543188221 1246 False 1033.000000 1033 82.033000 1118 2356 1 chr7B.!!$F1 1238
27 TraesCS3B01G480500 chr7B 380252459 380253029 570 True 904.000000 904 95.455000 284 847 1 chr7B.!!$R1 563
28 TraesCS3B01G480500 chr7B 596462219 596463078 859 True 495.500000 728 89.458000 3188 4065 2 chr7B.!!$R4 877
29 TraesCS3B01G480500 chr6D 425934231 425934799 568 True 928.000000 928 96.309000 284 845 1 chr6D.!!$R1 561
30 TraesCS3B01G480500 chr5D 266645674 266646244 570 True 915.000000 915 95.797000 284 846 1 chr5D.!!$R2 562
31 TraesCS3B01G480500 chr7D 390481550 390482118 568 False 911.000000 911 95.789000 284 845 1 chr7D.!!$F3 561
32 TraesCS3B01G480500 chr7D 467375903 467376476 573 False 898.000000 898 95.122000 280 845 1 chr7D.!!$F4 565
33 TraesCS3B01G480500 chr1B 585509346 585509914 568 True 911.000000 911 95.789000 284 845 1 chr1B.!!$R1 561
34 TraesCS3B01G480500 chr5A 431640123 431640689 566 True 887.000000 887 95.079000 284 845 1 chr5A.!!$R1 561
35 TraesCS3B01G480500 chr2D 468614760 468615335 575 False 887.000000 887 94.792000 283 847 1 chr2D.!!$F2 564
36 TraesCS3B01G480500 chr5B 332838590 332839235 645 True 726.000000 726 87.596000 3188 3813 1 chr5B.!!$R1 625
37 TraesCS3B01G480500 chrUn 361109717 361110363 646 True 715.000000 715 87.309000 3188 3813 1 chrUn.!!$R1 625
38 TraesCS3B01G480500 chr6B 49999324 49999960 636 False 715.000000 715 87.597000 3188 3804 1 chr6B.!!$F1 616
39 TraesCS3B01G480500 chr2B 573825879 573826516 637 False 710.000000 710 87.442000 3188 3804 1 chr2B.!!$F2 616
40 TraesCS3B01G480500 chr4B 648896480 648897331 851 True 478.000000 699 88.903000 3194 4065 2 chr4B.!!$R2 871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 318 0.178924 ATTAGGGATGGCAATGGGGC 60.179 55.000 0.00 0.0 43.73 5.80 F
1033 1069 0.033504 GCACTCTTCTCAACCGACCA 59.966 55.000 0.00 0.0 0.00 4.02 F
1071 1107 0.036765 GGATGCACGGTGTTCCAGTA 60.037 55.000 20.42 0.0 0.00 2.74 F
1072 1108 1.609580 GGATGCACGGTGTTCCAGTAA 60.610 52.381 20.42 0.0 0.00 2.24 F
1493 1978 1.946768 CGGACTTGTCCTTTTCAGCAA 59.053 47.619 16.60 0.0 0.00 3.91 F
3043 7632 0.394192 TGCACCTCTCAGTTCACCAG 59.606 55.000 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1814 1.539869 AAGGAGAGGAGGCTTGCCA 60.540 57.895 14.54 0.0 0.00 4.92 R
2748 7283 0.337082 TGAATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.0 0.00 4.37 R
2749 7284 1.041437 CTGAATACTCCCTCCGTCCC 58.959 60.000 0.00 0.0 0.00 4.46 R
2750 7285 1.777941 ACTGAATACTCCCTCCGTCC 58.222 55.000 0.00 0.0 0.00 4.79 R
3153 7788 1.267806 CAACACTTCACCTGCACCATC 59.732 52.381 0.00 0.0 0.00 3.51 R
4166 8970 0.393820 GGTTGGTCACCGGAGTAACA 59.606 55.000 9.46 0.0 35.12 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.660501 AGTAGAACATCACACGCAAGA 57.339 42.857 0.00 0.00 43.62 3.02
57 58 3.318017 AGTAGAACATCACACGCAAGAC 58.682 45.455 0.00 0.00 43.62 3.01
76 77 6.684555 GCAAGACGATATCATCAAAAACTGTC 59.315 38.462 1.07 0.00 0.00 3.51
79 80 8.136057 AGACGATATCATCAAAAACTGTCATC 57.864 34.615 1.07 0.00 0.00 2.92
129 130 7.244886 TCTTCATTTGTCTCTATCACCTTGA 57.755 36.000 0.00 0.00 0.00 3.02
130 131 7.099764 TCTTCATTTGTCTCTATCACCTTGAC 58.900 38.462 0.00 0.00 0.00 3.18
154 155 4.502282 GCTATCGGAATTCATCTCTATGCG 59.498 45.833 7.93 0.00 32.76 4.73
180 181 2.542595 CACCCGACTGTAGTTGTCAAAC 59.457 50.000 0.00 0.00 34.37 2.93
182 183 2.800544 CCCGACTGTAGTTGTCAAACTG 59.199 50.000 1.42 0.00 46.30 3.16
194 195 3.804036 TGTCAAACTGAGATCAAACCGT 58.196 40.909 0.00 0.00 0.00 4.83
213 214 3.966026 GAGGTCGGTGCTTCGTCCG 62.966 68.421 8.96 0.00 46.93 4.79
236 237 1.815003 CGCATCTCCGCACCAATCA 60.815 57.895 0.00 0.00 0.00 2.57
300 318 0.178924 ATTAGGGATGGCAATGGGGC 60.179 55.000 0.00 0.00 43.73 5.80
364 382 0.252696 TCCCTATCATCCCATCCCCG 60.253 60.000 0.00 0.00 0.00 5.73
382 400 1.477700 CCGTCCCCGTTTACATGACTA 59.522 52.381 0.00 0.00 0.00 2.59
413 431 2.522503 CCCATACCCATGCCCCAG 59.477 66.667 0.00 0.00 0.00 4.45
729 758 0.466963 CCATCCCCGTTGTACCCTAC 59.533 60.000 0.00 0.00 0.00 3.18
847 882 2.432300 CCCGTCGCCATCCCTAGTT 61.432 63.158 0.00 0.00 0.00 2.24
848 883 1.227263 CCGTCGCCATCCCTAGTTG 60.227 63.158 0.00 0.00 0.00 3.16
849 884 1.672854 CCGTCGCCATCCCTAGTTGA 61.673 60.000 0.00 0.00 0.00 3.18
850 885 0.527817 CGTCGCCATCCCTAGTTGAC 60.528 60.000 0.00 0.00 0.00 3.18
851 886 0.535335 GTCGCCATCCCTAGTTGACA 59.465 55.000 0.00 0.00 0.00 3.58
852 887 1.139058 GTCGCCATCCCTAGTTGACAT 59.861 52.381 0.00 0.00 0.00 3.06
864 899 5.179368 CCCTAGTTGACATGTGTTGTACAAG 59.821 44.000 8.98 0.00 43.77 3.16
907 942 8.372521 CAAAATGTTGATGTTTATAAACGAGCC 58.627 33.333 20.51 11.29 38.09 4.70
912 947 5.116180 TGATGTTTATAAACGAGCCTCTGG 58.884 41.667 20.51 0.00 41.74 3.86
916 951 0.326238 ATAAACGAGCCTCTGGGGGA 60.326 55.000 0.00 0.00 35.12 4.81
917 952 1.262640 TAAACGAGCCTCTGGGGGAC 61.263 60.000 0.00 0.00 35.12 4.46
933 969 4.309950 ACCGTTCCGTGTGAGGCC 62.310 66.667 0.00 0.00 0.00 5.19
940 976 0.912487 TCCGTGTGAGGCCCCTTTAT 60.912 55.000 0.00 0.00 0.00 1.40
941 977 0.834612 CCGTGTGAGGCCCCTTTATA 59.165 55.000 0.00 0.00 0.00 0.98
950 986 2.032071 CCCTTTATAGCGGGGCCG 59.968 66.667 0.00 0.00 43.09 6.13
982 1018 0.765510 AGGTCTGTTCCACCCAGTTC 59.234 55.000 0.00 0.00 33.96 3.01
985 1021 1.966451 CTGTTCCACCCAGTTCGGC 60.966 63.158 0.00 0.00 0.00 5.54
1033 1069 0.033504 GCACTCTTCTCAACCGACCA 59.966 55.000 0.00 0.00 0.00 4.02
1035 1071 2.833794 CACTCTTCTCAACCGACCAAA 58.166 47.619 0.00 0.00 0.00 3.28
1036 1072 3.403038 CACTCTTCTCAACCGACCAAAT 58.597 45.455 0.00 0.00 0.00 2.32
1037 1073 3.433615 CACTCTTCTCAACCGACCAAATC 59.566 47.826 0.00 0.00 0.00 2.17
1052 1088 4.370364 CCAAATCGTCCTTGGTAATTGG 57.630 45.455 5.20 0.00 38.85 3.16
1053 1089 3.130340 CCAAATCGTCCTTGGTAATTGGG 59.870 47.826 0.00 0.00 38.85 4.12
1054 1090 4.013728 CAAATCGTCCTTGGTAATTGGGA 58.986 43.478 0.00 0.00 0.00 4.37
1055 1091 4.519906 AATCGTCCTTGGTAATTGGGAT 57.480 40.909 0.00 0.00 0.00 3.85
1056 1092 3.275617 TCGTCCTTGGTAATTGGGATG 57.724 47.619 0.00 0.00 36.51 3.51
1057 1093 1.676006 CGTCCTTGGTAATTGGGATGC 59.324 52.381 0.00 0.00 0.00 3.91
1058 1094 2.733956 GTCCTTGGTAATTGGGATGCA 58.266 47.619 0.00 0.00 0.00 3.96
1059 1095 2.427095 GTCCTTGGTAATTGGGATGCAC 59.573 50.000 0.00 0.00 0.00 4.57
1060 1096 1.405105 CCTTGGTAATTGGGATGCACG 59.595 52.381 0.00 0.00 0.00 5.34
1061 1097 1.405105 CTTGGTAATTGGGATGCACGG 59.595 52.381 0.00 0.00 0.00 4.94
1062 1098 0.329931 TGGTAATTGGGATGCACGGT 59.670 50.000 0.00 0.00 0.00 4.83
1063 1099 0.738389 GGTAATTGGGATGCACGGTG 59.262 55.000 3.15 3.15 0.00 4.94
1064 1100 1.459450 GTAATTGGGATGCACGGTGT 58.541 50.000 10.24 0.00 0.00 4.16
1065 1101 1.816224 GTAATTGGGATGCACGGTGTT 59.184 47.619 10.24 0.00 0.00 3.32
1066 1102 0.887933 AATTGGGATGCACGGTGTTC 59.112 50.000 10.24 7.26 0.00 3.18
1067 1103 0.965363 ATTGGGATGCACGGTGTTCC 60.965 55.000 18.35 18.35 0.00 3.62
1068 1104 2.033448 GGGATGCACGGTGTTCCA 59.967 61.111 24.14 10.76 0.00 3.53
1069 1105 2.040544 GGGATGCACGGTGTTCCAG 61.041 63.158 24.14 0.00 0.00 3.86
1070 1106 1.302511 GGATGCACGGTGTTCCAGT 60.303 57.895 20.42 0.00 0.00 4.00
1071 1107 0.036765 GGATGCACGGTGTTCCAGTA 60.037 55.000 20.42 0.00 0.00 2.74
1072 1108 1.609580 GGATGCACGGTGTTCCAGTAA 60.610 52.381 20.42 0.00 0.00 2.24
1073 1109 2.147958 GATGCACGGTGTTCCAGTAAA 58.852 47.619 10.24 0.00 0.00 2.01
1074 1110 2.039818 TGCACGGTGTTCCAGTAAAA 57.960 45.000 10.24 0.00 0.00 1.52
1329 1814 3.605749 CTTCCGCGACCACCACCAT 62.606 63.158 8.23 0.00 0.00 3.55
1493 1978 1.946768 CGGACTTGTCCTTTTCAGCAA 59.053 47.619 16.60 0.00 0.00 3.91
1494 1979 2.554032 CGGACTTGTCCTTTTCAGCAAT 59.446 45.455 16.60 0.00 0.00 3.56
1938 3455 5.475564 CCAATTAAGGATTATTACACCCGGG 59.524 44.000 22.25 22.25 0.00 5.73
2166 3689 4.238514 GCGTCTTCATGGTATATCTCCAC 58.761 47.826 0.00 0.00 37.81 4.02
2277 6496 7.886338 AGCCTTTATATAATTTACTTGGCAGC 58.114 34.615 0.00 0.00 39.10 5.25
2280 6499 9.630098 CCTTTATATAATTTACTTGGCAGCATG 57.370 33.333 0.00 0.00 40.87 4.06
2324 6555 8.052748 AGTAATTAGTTAGTGAAATGCCATCCA 58.947 33.333 0.00 0.00 0.00 3.41
2342 6573 3.812262 TCCATGAGTGTTATGCTGATGG 58.188 45.455 4.76 4.76 45.18 3.51
2466 6826 2.949714 ACAGTTTGAAATCGACGCAG 57.050 45.000 0.00 0.00 0.00 5.18
2612 6978 4.636206 ACTTGTTCCTCTTTGTCTGACAAC 59.364 41.667 21.95 10.64 37.90 3.32
2614 6980 3.195661 GTTCCTCTTTGTCTGACAACGT 58.804 45.455 21.95 0.00 37.90 3.99
2618 6984 5.607477 TCCTCTTTGTCTGACAACGTATTT 58.393 37.500 21.95 0.00 37.90 1.40
2657 7190 9.924650 ATGATTTCTTGAAAGGATCTTTTCTTG 57.075 29.630 25.30 18.65 37.81 3.02
2678 7213 8.862325 TCTTGTGTGAATTGTCTTATGGTAAT 57.138 30.769 0.00 0.00 0.00 1.89
2679 7214 9.952030 TCTTGTGTGAATTGTCTTATGGTAATA 57.048 29.630 0.00 0.00 0.00 0.98
2680 7215 9.988350 CTTGTGTGAATTGTCTTATGGTAATAC 57.012 33.333 0.00 0.00 0.00 1.89
2681 7216 9.733556 TTGTGTGAATTGTCTTATGGTAATACT 57.266 29.630 0.00 0.00 0.00 2.12
2682 7217 9.378551 TGTGTGAATTGTCTTATGGTAATACTC 57.621 33.333 0.00 0.00 0.00 2.59
2683 7218 8.827677 GTGTGAATTGTCTTATGGTAATACTCC 58.172 37.037 0.00 0.00 0.00 3.85
2684 7219 7.990886 TGTGAATTGTCTTATGGTAATACTCCC 59.009 37.037 0.00 0.00 0.00 4.30
2685 7220 8.211629 GTGAATTGTCTTATGGTAATACTCCCT 58.788 37.037 0.00 0.00 0.00 4.20
2686 7221 8.429641 TGAATTGTCTTATGGTAATACTCCCTC 58.570 37.037 0.00 0.00 0.00 4.30
2687 7222 8.568617 AATTGTCTTATGGTAATACTCCCTCT 57.431 34.615 0.00 0.00 0.00 3.69
2688 7223 6.978674 TGTCTTATGGTAATACTCCCTCTG 57.021 41.667 0.00 0.00 0.00 3.35
2689 7224 6.441222 TGTCTTATGGTAATACTCCCTCTGT 58.559 40.000 0.00 0.00 0.00 3.41
2690 7225 6.550108 TGTCTTATGGTAATACTCCCTCTGTC 59.450 42.308 0.00 0.00 0.00 3.51
2691 7226 6.015265 GTCTTATGGTAATACTCCCTCTGTCC 60.015 46.154 0.00 0.00 0.00 4.02
2692 7227 3.042059 TGGTAATACTCCCTCTGTCCC 57.958 52.381 0.00 0.00 0.00 4.46
2693 7228 2.316677 TGGTAATACTCCCTCTGTCCCA 59.683 50.000 0.00 0.00 0.00 4.37
2694 7229 2.966516 GGTAATACTCCCTCTGTCCCAG 59.033 54.545 0.00 0.00 0.00 4.45
2695 7230 3.373877 GGTAATACTCCCTCTGTCCCAGA 60.374 52.174 0.00 0.00 38.25 3.86
2696 7231 3.491766 AATACTCCCTCTGTCCCAGAA 57.508 47.619 0.00 0.00 40.18 3.02
2697 7232 3.715648 ATACTCCCTCTGTCCCAGAAT 57.284 47.619 0.00 0.00 40.18 2.40
2698 7233 4.834406 ATACTCCCTCTGTCCCAGAATA 57.166 45.455 0.00 0.00 40.18 1.75
2699 7234 3.491766 ACTCCCTCTGTCCCAGAATAA 57.508 47.619 0.00 0.00 40.18 1.40
2700 7235 3.379452 ACTCCCTCTGTCCCAGAATAAG 58.621 50.000 0.00 0.00 40.18 1.73
2701 7236 3.246167 ACTCCCTCTGTCCCAGAATAAGT 60.246 47.826 0.00 0.00 40.18 2.24
2702 7237 3.107601 TCCCTCTGTCCCAGAATAAGTG 58.892 50.000 0.00 0.00 40.18 3.16
2703 7238 3.107601 CCCTCTGTCCCAGAATAAGTGA 58.892 50.000 0.00 0.00 40.18 3.41
2704 7239 3.118592 CCCTCTGTCCCAGAATAAGTGAC 60.119 52.174 0.00 0.00 40.18 3.67
2705 7240 3.772025 CCTCTGTCCCAGAATAAGTGACT 59.228 47.826 0.00 0.00 40.18 3.41
2706 7241 4.142049 CCTCTGTCCCAGAATAAGTGACTC 60.142 50.000 0.00 0.00 40.18 3.36
2707 7242 4.416516 TCTGTCCCAGAATAAGTGACTCA 58.583 43.478 0.00 0.00 37.57 3.41
2708 7243 4.838423 TCTGTCCCAGAATAAGTGACTCAA 59.162 41.667 0.00 0.00 37.57 3.02
2709 7244 4.894784 TGTCCCAGAATAAGTGACTCAAC 58.105 43.478 0.00 0.00 0.00 3.18
2710 7245 4.346709 TGTCCCAGAATAAGTGACTCAACA 59.653 41.667 0.00 0.00 0.00 3.33
2711 7246 5.013079 TGTCCCAGAATAAGTGACTCAACAT 59.987 40.000 0.00 0.00 0.00 2.71
2712 7247 5.940470 GTCCCAGAATAAGTGACTCAACATT 59.060 40.000 0.00 0.00 0.00 2.71
2713 7248 5.939883 TCCCAGAATAAGTGACTCAACATTG 59.060 40.000 0.00 0.00 0.00 2.82
2714 7249 5.392380 CCCAGAATAAGTGACTCAACATTGC 60.392 44.000 0.00 0.00 0.00 3.56
2715 7250 5.181811 CCAGAATAAGTGACTCAACATTGCA 59.818 40.000 0.00 0.00 0.00 4.08
2716 7251 6.082338 CAGAATAAGTGACTCAACATTGCAC 58.918 40.000 0.00 0.00 0.00 4.57
2717 7252 6.000219 AGAATAAGTGACTCAACATTGCACT 59.000 36.000 0.00 0.00 41.19 4.40
2718 7253 7.118245 CAGAATAAGTGACTCAACATTGCACTA 59.882 37.037 0.00 0.00 38.74 2.74
2719 7254 7.661437 AGAATAAGTGACTCAACATTGCACTAA 59.339 33.333 0.00 0.00 38.74 2.24
2720 7255 5.424121 AAGTGACTCAACATTGCACTAAC 57.576 39.130 0.00 0.00 38.74 2.34
2721 7256 4.708177 AGTGACTCAACATTGCACTAACT 58.292 39.130 0.00 0.00 37.98 2.24
2722 7257 5.126067 AGTGACTCAACATTGCACTAACTT 58.874 37.500 0.00 0.00 37.98 2.66
2723 7258 5.590259 AGTGACTCAACATTGCACTAACTTT 59.410 36.000 0.00 0.00 37.98 2.66
2724 7259 6.765989 AGTGACTCAACATTGCACTAACTTTA 59.234 34.615 0.00 0.00 37.98 1.85
2725 7260 7.041780 AGTGACTCAACATTGCACTAACTTTAG 60.042 37.037 0.00 0.00 37.98 1.85
2726 7261 6.765989 TGACTCAACATTGCACTAACTTTAGT 59.234 34.615 0.00 0.00 44.42 2.24
2727 7262 7.929245 TGACTCAACATTGCACTAACTTTAGTA 59.071 33.333 1.30 0.00 41.82 1.82
2728 7263 8.084590 ACTCAACATTGCACTAACTTTAGTAC 57.915 34.615 1.30 0.00 41.82 2.73
2729 7264 7.713507 ACTCAACATTGCACTAACTTTAGTACA 59.286 33.333 1.30 0.00 41.82 2.90
2730 7265 8.439993 TCAACATTGCACTAACTTTAGTACAA 57.560 30.769 14.38 14.38 45.76 2.41
2731 7266 8.894731 TCAACATTGCACTAACTTTAGTACAAA 58.105 29.630 15.51 6.06 45.19 2.83
2732 7267 9.169468 CAACATTGCACTAACTTTAGTACAAAG 57.831 33.333 15.51 13.97 45.19 2.77
2733 7268 8.446599 ACATTGCACTAACTTTAGTACAAAGT 57.553 30.769 15.51 14.46 45.19 2.66
2734 7269 8.899771 ACATTGCACTAACTTTAGTACAAAGTT 58.100 29.630 25.48 25.48 45.19 2.66
2735 7270 9.169468 CATTGCACTAACTTTAGTACAAAGTTG 57.831 33.333 27.85 22.56 45.19 3.16
2736 7271 8.495361 TTGCACTAACTTTAGTACAAAGTTGA 57.505 30.769 27.85 18.21 46.41 3.18
2737 7272 8.138365 TGCACTAACTTTAGTACAAAGTTGAG 57.862 34.615 27.85 23.58 46.41 3.02
2738 7273 7.767198 TGCACTAACTTTAGTACAAAGTTGAGT 59.233 33.333 27.85 23.93 46.41 3.41
2739 7274 8.274248 GCACTAACTTTAGTACAAAGTTGAGTC 58.726 37.037 27.85 19.73 46.41 3.36
2740 7275 9.309516 CACTAACTTTAGTACAAAGTTGAGTCA 57.690 33.333 27.85 16.53 46.41 3.41
2741 7276 9.310716 ACTAACTTTAGTACAAAGTTGAGTCAC 57.689 33.333 27.85 0.00 46.41 3.67
2742 7277 9.530633 CTAACTTTAGTACAAAGTTGAGTCACT 57.469 33.333 27.85 13.98 46.41 3.41
2743 7278 8.788325 AACTTTAGTACAAAGTTGAGTCACTT 57.212 30.769 23.48 0.00 45.58 3.16
2744 7279 9.880157 AACTTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 23.48 0.00 45.58 2.24
2750 7285 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2751 7286 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2752 7287 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2753 7288 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2754 7289 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2755 7290 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2756 7291 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2757 7292 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2758 7293 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2759 7294 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2760 7295 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2761 7296 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2778 7313 3.012502 AGGGAGTATTCAGTACTGGACCA 59.987 47.826 22.48 3.06 43.66 4.02
2797 7332 4.526970 ACCACAGTTCTCTTGACAATGTT 58.473 39.130 0.00 0.00 0.00 2.71
2856 7428 2.548480 GGCACTTGTCGAAGCTTAAAGT 59.452 45.455 0.00 4.76 31.68 2.66
2859 7431 5.277634 GGCACTTGTCGAAGCTTAAAGTTAA 60.278 40.000 0.00 0.00 31.68 2.01
2901 7477 6.758416 GGAAGCTGGAACCAATTGAATAAATC 59.242 38.462 7.12 0.00 0.00 2.17
3042 7631 1.059098 ATGCACCTCTCAGTTCACCA 58.941 50.000 0.00 0.00 0.00 4.17
3043 7632 0.394192 TGCACCTCTCAGTTCACCAG 59.606 55.000 0.00 0.00 0.00 4.00
3045 7634 1.202698 GCACCTCTCAGTTCACCAGTT 60.203 52.381 0.00 0.00 0.00 3.16
3046 7635 2.760374 CACCTCTCAGTTCACCAGTTC 58.240 52.381 0.00 0.00 0.00 3.01
3047 7636 2.103094 CACCTCTCAGTTCACCAGTTCA 59.897 50.000 0.00 0.00 0.00 3.18
3048 7637 2.103263 ACCTCTCAGTTCACCAGTTCAC 59.897 50.000 0.00 0.00 0.00 3.18
3049 7638 2.548920 CCTCTCAGTTCACCAGTTCACC 60.549 54.545 0.00 0.00 0.00 4.02
3050 7639 2.366916 CTCTCAGTTCACCAGTTCACCT 59.633 50.000 0.00 0.00 0.00 4.00
3051 7640 2.771943 TCTCAGTTCACCAGTTCACCTT 59.228 45.455 0.00 0.00 0.00 3.50
3129 7764 7.175990 TGTTGGGTTTCTGACATTTTATACTCC 59.824 37.037 0.00 0.00 0.00 3.85
3153 7788 4.404640 AGATATTGGCATTGGTGATGGAG 58.595 43.478 0.00 0.00 36.21 3.86
3179 7814 1.748493 GCAGGTGAAGTGTTGGACAAA 59.252 47.619 0.00 0.00 0.00 2.83
3279 7918 6.385766 TGTGTCCATGGGAATATATATGCA 57.614 37.500 13.02 0.00 31.38 3.96
3315 7965 3.699411 TTGCTGCATGGGCTTTAATTT 57.301 38.095 1.84 0.00 41.91 1.82
3402 8060 9.330063 TGCCTAAGTAATTGAGAAGAATGTATG 57.670 33.333 0.00 0.00 0.00 2.39
3422 8095 4.196626 TGTACCAGAACATAAGAACCCG 57.803 45.455 0.00 0.00 0.00 5.28
3656 8455 3.988819 AGACTCAAAGCTCTGTTCTGAC 58.011 45.455 0.00 0.00 0.00 3.51
3657 8456 3.640967 AGACTCAAAGCTCTGTTCTGACT 59.359 43.478 0.00 0.00 0.00 3.41
3658 8457 4.100808 AGACTCAAAGCTCTGTTCTGACTT 59.899 41.667 0.00 0.00 0.00 3.01
3670 8469 4.910195 TGTTCTGACTTCTAATGCCATGT 58.090 39.130 0.00 0.00 0.00 3.21
3673 8472 5.164620 TCTGACTTCTAATGCCATGTGAA 57.835 39.130 0.00 0.00 0.00 3.18
3677 8476 5.769662 TGACTTCTAATGCCATGTGAAGTTT 59.230 36.000 19.63 5.43 44.70 2.66
3685 8485 4.892433 TGCCATGTGAAGTTTTAAATGGG 58.108 39.130 7.66 0.00 36.02 4.00
3686 8486 4.346418 TGCCATGTGAAGTTTTAAATGGGT 59.654 37.500 7.66 0.00 36.02 4.51
3737 8539 9.717942 ATCTTATGAGTTGATAAAGTATCTGCC 57.282 33.333 0.00 0.00 36.17 4.85
3740 8542 6.985188 TGAGTTGATAAAGTATCTGCCAAC 57.015 37.500 0.00 0.00 36.17 3.77
3744 8546 7.620880 AGTTGATAAAGTATCTGCCAACACTA 58.379 34.615 0.00 0.00 36.17 2.74
3748 8550 7.549134 TGATAAAGTATCTGCCAACACTAGTTG 59.451 37.037 0.00 1.53 43.39 3.16
3749 8551 7.466050 GATAAAGTATCTGCCAACACTAGTTGC 60.466 40.741 0.00 0.00 41.37 4.17
3763 8565 5.523916 ACACTAGTTGCTTTGTGAGTAGTTG 59.476 40.000 0.00 0.00 34.81 3.16
3764 8566 5.523916 CACTAGTTGCTTTGTGAGTAGTTGT 59.476 40.000 0.00 0.00 32.72 3.32
3803 8606 9.482627 AAGAAGTATACTATGCTTGTGATAAGC 57.517 33.333 5.65 7.00 43.29 3.09
3804 8607 8.865090 AGAAGTATACTATGCTTGTGATAAGCT 58.135 33.333 14.87 3.74 43.38 3.74
3806 8609 7.309177 AGTATACTATGCTTGTGATAAGCTCG 58.691 38.462 14.87 5.94 43.38 5.03
3808 8611 5.207110 ACTATGCTTGTGATAAGCTCGAT 57.793 39.130 14.87 3.34 43.38 3.59
3809 8612 4.987285 ACTATGCTTGTGATAAGCTCGATG 59.013 41.667 14.87 4.08 43.38 3.84
3810 8613 3.251479 TGCTTGTGATAAGCTCGATGT 57.749 42.857 14.87 0.00 43.38 3.06
3839 8642 8.419076 TTTTTCTTACTTTCTGATGTTTTGCC 57.581 30.769 0.00 0.00 0.00 4.52
3840 8643 6.707440 TTCTTACTTTCTGATGTTTTGCCA 57.293 33.333 0.00 0.00 0.00 4.92
3841 8644 6.899393 TCTTACTTTCTGATGTTTTGCCAT 57.101 33.333 0.00 0.00 0.00 4.40
3842 8645 7.288810 TCTTACTTTCTGATGTTTTGCCATT 57.711 32.000 0.00 0.00 0.00 3.16
3843 8646 7.725251 TCTTACTTTCTGATGTTTTGCCATTT 58.275 30.769 0.00 0.00 0.00 2.32
3844 8647 8.855110 TCTTACTTTCTGATGTTTTGCCATTTA 58.145 29.630 0.00 0.00 0.00 1.40
3845 8648 9.643693 CTTACTTTCTGATGTTTTGCCATTTAT 57.356 29.630 0.00 0.00 0.00 1.40
3846 8649 9.638239 TTACTTTCTGATGTTTTGCCATTTATC 57.362 29.630 0.00 0.00 0.00 1.75
3847 8650 7.899973 ACTTTCTGATGTTTTGCCATTTATCT 58.100 30.769 0.00 0.00 0.00 1.98
3848 8651 8.031277 ACTTTCTGATGTTTTGCCATTTATCTC 58.969 33.333 0.00 0.00 0.00 2.75
3849 8652 6.455360 TCTGATGTTTTGCCATTTATCTCC 57.545 37.500 0.00 0.00 0.00 3.71
3850 8653 5.360714 TCTGATGTTTTGCCATTTATCTCCC 59.639 40.000 0.00 0.00 0.00 4.30
3851 8654 4.405358 TGATGTTTTGCCATTTATCTCCCC 59.595 41.667 0.00 0.00 0.00 4.81
3852 8655 3.784178 TGTTTTGCCATTTATCTCCCCA 58.216 40.909 0.00 0.00 0.00 4.96
3853 8656 3.768757 TGTTTTGCCATTTATCTCCCCAG 59.231 43.478 0.00 0.00 0.00 4.45
3854 8657 3.756082 TTTGCCATTTATCTCCCCAGT 57.244 42.857 0.00 0.00 0.00 4.00
3855 8658 2.734755 TGCCATTTATCTCCCCAGTG 57.265 50.000 0.00 0.00 0.00 3.66
3856 8659 2.204463 TGCCATTTATCTCCCCAGTGA 58.796 47.619 0.00 0.00 0.00 3.41
3861 8664 6.012745 GCCATTTATCTCCCCAGTGATATTT 58.987 40.000 0.00 0.00 30.63 1.40
3862 8665 7.175104 GCCATTTATCTCCCCAGTGATATTTA 58.825 38.462 0.00 0.00 30.63 1.40
3868 8671 9.905713 TTATCTCCCCAGTGATATTTATATTGC 57.094 33.333 0.00 0.00 30.63 3.56
3869 8672 7.328404 TCTCCCCAGTGATATTTATATTGCA 57.672 36.000 0.00 0.00 0.00 4.08
3911 8714 7.804843 TTTCTGTTAAGTATTTTTCCCGTCA 57.195 32.000 0.00 0.00 0.00 4.35
3921 8724 4.497473 TTTTTCCCGTCACTGCATTAAG 57.503 40.909 0.00 0.00 0.00 1.85
3978 8782 3.824443 GGTATGGTTAAGTTGCAGGTTGT 59.176 43.478 0.00 0.00 0.00 3.32
4066 8870 4.041740 TCATCCGTTGTAGCATGTACTC 57.958 45.455 0.00 0.00 0.00 2.59
4067 8871 2.953466 TCCGTTGTAGCATGTACTCC 57.047 50.000 0.00 0.00 0.00 3.85
4068 8872 1.479323 TCCGTTGTAGCATGTACTCCC 59.521 52.381 0.00 0.00 0.00 4.30
4069 8873 1.480954 CCGTTGTAGCATGTACTCCCT 59.519 52.381 0.00 0.00 0.00 4.20
4070 8874 2.481449 CCGTTGTAGCATGTACTCCCTC 60.481 54.545 0.00 0.00 0.00 4.30
4071 8875 2.427453 CGTTGTAGCATGTACTCCCTCT 59.573 50.000 0.00 0.00 0.00 3.69
4072 8876 3.735208 CGTTGTAGCATGTACTCCCTCTG 60.735 52.174 0.00 0.00 0.00 3.35
4073 8877 3.101643 TGTAGCATGTACTCCCTCTGT 57.898 47.619 0.00 0.00 0.00 3.41
4074 8878 4.245251 TGTAGCATGTACTCCCTCTGTA 57.755 45.455 0.00 0.00 0.00 2.74
4075 8879 4.606210 TGTAGCATGTACTCCCTCTGTAA 58.394 43.478 0.00 0.00 0.00 2.41
4076 8880 5.020795 TGTAGCATGTACTCCCTCTGTAAA 58.979 41.667 0.00 0.00 0.00 2.01
4077 8881 4.744795 AGCATGTACTCCCTCTGTAAAG 57.255 45.455 0.00 0.00 0.00 1.85
4078 8882 4.353777 AGCATGTACTCCCTCTGTAAAGA 58.646 43.478 0.00 0.00 0.00 2.52
4079 8883 4.777896 AGCATGTACTCCCTCTGTAAAGAA 59.222 41.667 0.00 0.00 0.00 2.52
4080 8884 5.248477 AGCATGTACTCCCTCTGTAAAGAAA 59.752 40.000 0.00 0.00 0.00 2.52
4081 8885 6.069963 AGCATGTACTCCCTCTGTAAAGAAAT 60.070 38.462 0.00 0.00 0.00 2.17
4082 8886 7.125811 AGCATGTACTCCCTCTGTAAAGAAATA 59.874 37.037 0.00 0.00 0.00 1.40
4083 8887 7.934120 GCATGTACTCCCTCTGTAAAGAAATAT 59.066 37.037 0.00 0.00 0.00 1.28
4089 8893 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4090 8894 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4091 8895 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4092 8896 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4093 8897 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4108 8912 7.964604 AAGAGCGTTTAGATCACTAAAACTT 57.035 32.000 0.00 0.00 45.97 2.66
4110 8914 9.654663 AAGAGCGTTTAGATCACTAAAACTTAT 57.345 29.630 0.00 0.00 45.97 1.73
4111 8915 9.654663 AGAGCGTTTAGATCACTAAAACTTATT 57.345 29.630 0.00 0.00 45.97 1.40
4133 8937 9.713713 TTATTAAGTATGAAGTACACACTTGCA 57.286 29.630 0.00 0.00 44.53 4.08
4134 8938 7.652300 TTAAGTATGAAGTACACACTTGCAG 57.348 36.000 0.00 0.00 44.53 4.41
4135 8939 4.569943 AGTATGAAGTACACACTTGCAGG 58.430 43.478 0.00 0.00 45.18 4.85
4136 8940 3.769739 ATGAAGTACACACTTGCAGGA 57.230 42.857 1.40 0.00 45.18 3.86
4137 8941 3.552132 TGAAGTACACACTTGCAGGAA 57.448 42.857 1.40 0.00 45.18 3.36
4138 8942 3.202906 TGAAGTACACACTTGCAGGAAC 58.797 45.455 1.40 0.00 45.18 3.62
4139 8943 1.865865 AGTACACACTTGCAGGAACG 58.134 50.000 1.40 0.00 0.00 3.95
4140 8944 1.411246 AGTACACACTTGCAGGAACGA 59.589 47.619 1.40 0.00 0.00 3.85
4141 8945 2.159014 AGTACACACTTGCAGGAACGAA 60.159 45.455 1.40 0.00 0.00 3.85
4142 8946 1.745232 ACACACTTGCAGGAACGAAA 58.255 45.000 1.40 0.00 0.00 3.46
4143 8947 2.297701 ACACACTTGCAGGAACGAAAT 58.702 42.857 1.40 0.00 0.00 2.17
4144 8948 2.687935 ACACACTTGCAGGAACGAAATT 59.312 40.909 1.40 0.00 0.00 1.82
4145 8949 3.044986 CACACTTGCAGGAACGAAATTG 58.955 45.455 1.40 0.00 0.00 2.32
4146 8950 2.034558 ACACTTGCAGGAACGAAATTGG 59.965 45.455 1.40 0.00 0.00 3.16
4147 8951 2.034558 CACTTGCAGGAACGAAATTGGT 59.965 45.455 1.40 0.00 0.00 3.67
4148 8952 2.693074 ACTTGCAGGAACGAAATTGGTT 59.307 40.909 1.40 0.00 0.00 3.67
4149 8953 3.886505 ACTTGCAGGAACGAAATTGGTTA 59.113 39.130 1.40 0.00 0.00 2.85
4150 8954 4.522789 ACTTGCAGGAACGAAATTGGTTAT 59.477 37.500 1.40 0.00 0.00 1.89
4151 8955 4.695217 TGCAGGAACGAAATTGGTTATC 57.305 40.909 0.00 0.00 0.00 1.75
4152 8956 4.331968 TGCAGGAACGAAATTGGTTATCT 58.668 39.130 0.00 0.00 0.00 1.98
4153 8957 4.764823 TGCAGGAACGAAATTGGTTATCTT 59.235 37.500 0.00 0.00 0.00 2.40
4154 8958 5.095490 GCAGGAACGAAATTGGTTATCTTG 58.905 41.667 0.00 0.00 0.00 3.02
4155 8959 5.335661 GCAGGAACGAAATTGGTTATCTTGT 60.336 40.000 0.00 0.00 0.00 3.16
4156 8960 6.677913 CAGGAACGAAATTGGTTATCTTGTT 58.322 36.000 0.00 0.00 0.00 2.83
4157 8961 7.574217 GCAGGAACGAAATTGGTTATCTTGTTA 60.574 37.037 0.00 0.00 0.00 2.41
4158 8962 7.962918 CAGGAACGAAATTGGTTATCTTGTTAG 59.037 37.037 0.00 0.00 0.00 2.34
4159 8963 6.745907 GGAACGAAATTGGTTATCTTGTTAGC 59.254 38.462 0.00 0.00 0.00 3.09
4160 8964 7.361799 GGAACGAAATTGGTTATCTTGTTAGCT 60.362 37.037 0.00 0.00 0.00 3.32
4161 8965 7.073342 ACGAAATTGGTTATCTTGTTAGCTC 57.927 36.000 0.00 0.00 0.00 4.09
4162 8966 6.879458 ACGAAATTGGTTATCTTGTTAGCTCT 59.121 34.615 0.00 0.00 0.00 4.09
4163 8967 7.064728 ACGAAATTGGTTATCTTGTTAGCTCTC 59.935 37.037 0.00 0.00 0.00 3.20
4164 8968 7.064609 CGAAATTGGTTATCTTGTTAGCTCTCA 59.935 37.037 0.00 0.00 0.00 3.27
4165 8969 7.617041 AATTGGTTATCTTGTTAGCTCTCAC 57.383 36.000 0.00 0.00 0.00 3.51
4166 8970 6.360370 TTGGTTATCTTGTTAGCTCTCACT 57.640 37.500 0.00 0.00 0.00 3.41
4167 8971 5.724328 TGGTTATCTTGTTAGCTCTCACTG 58.276 41.667 0.00 0.00 0.00 3.66
4168 8972 5.246203 TGGTTATCTTGTTAGCTCTCACTGT 59.754 40.000 0.00 0.00 0.00 3.55
4169 8973 6.166982 GGTTATCTTGTTAGCTCTCACTGTT 58.833 40.000 0.00 0.00 0.00 3.16
4170 8974 7.039293 TGGTTATCTTGTTAGCTCTCACTGTTA 60.039 37.037 0.00 0.00 0.00 2.41
4171 8975 7.275999 GGTTATCTTGTTAGCTCTCACTGTTAC 59.724 40.741 0.00 0.00 0.00 2.50
4172 8976 6.597832 ATCTTGTTAGCTCTCACTGTTACT 57.402 37.500 0.00 0.00 0.00 2.24
4173 8977 6.015027 TCTTGTTAGCTCTCACTGTTACTC 57.985 41.667 0.00 0.00 0.00 2.59
4174 8978 4.785511 TGTTAGCTCTCACTGTTACTCC 57.214 45.455 0.00 0.00 0.00 3.85
4175 8979 3.190744 TGTTAGCTCTCACTGTTACTCCG 59.809 47.826 0.00 0.00 0.00 4.63
4176 8980 1.178276 AGCTCTCACTGTTACTCCGG 58.822 55.000 0.00 0.00 0.00 5.14
4177 8981 0.889306 GCTCTCACTGTTACTCCGGT 59.111 55.000 0.00 0.00 0.00 5.28
4178 8982 1.402984 GCTCTCACTGTTACTCCGGTG 60.403 57.143 0.00 0.00 0.00 4.94
4179 8983 2.160205 CTCTCACTGTTACTCCGGTGA 58.840 52.381 11.17 0.00 37.21 4.02
4180 8984 1.884579 TCTCACTGTTACTCCGGTGAC 59.115 52.381 11.17 0.00 35.31 3.67
4181 8985 0.963962 TCACTGTTACTCCGGTGACC 59.036 55.000 11.17 0.00 34.38 4.02
4182 8986 0.677288 CACTGTTACTCCGGTGACCA 59.323 55.000 11.17 2.76 31.94 4.02
4183 8987 1.069513 CACTGTTACTCCGGTGACCAA 59.930 52.381 11.17 0.00 31.94 3.67
4184 8988 1.069668 ACTGTTACTCCGGTGACCAAC 59.930 52.381 11.17 11.08 31.94 3.77
4185 8989 0.393820 TGTTACTCCGGTGACCAACC 59.606 55.000 11.17 0.00 46.60 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.795768 ATCGTCTTGCGTGTGATGTT 58.204 45.000 0.00 0.00 42.13 2.71
43 44 3.115554 TGATATCGTCTTGCGTGTGATG 58.884 45.455 0.00 0.00 42.13 3.07
45 46 2.931512 TGATATCGTCTTGCGTGTGA 57.068 45.000 0.00 0.00 42.13 3.58
56 57 6.756542 TCGATGACAGTTTTTGATGATATCGT 59.243 34.615 0.00 0.00 37.23 3.73
57 58 7.165427 TCGATGACAGTTTTTGATGATATCG 57.835 36.000 0.00 0.00 37.25 2.92
79 80 2.224549 AGGTCGCTCTTTCGATCTATCG 59.775 50.000 6.01 6.01 46.84 2.92
85 86 1.115467 ATGGAGGTCGCTCTTTCGAT 58.885 50.000 0.00 0.00 40.84 3.59
102 103 8.396390 CAAGGTGATAGAGACAAATGAAGAATG 58.604 37.037 0.00 0.00 0.00 2.67
129 130 5.645624 CATAGAGATGAATTCCGATAGCGT 58.354 41.667 2.27 0.00 34.73 5.07
130 131 4.502282 GCATAGAGATGAATTCCGATAGCG 59.498 45.833 2.27 0.00 34.73 4.26
154 155 4.171754 GACAACTACAGTCGGGTGTAATC 58.828 47.826 0.00 0.00 32.49 1.75
180 181 2.611518 GACCTCACGGTTTGATCTCAG 58.388 52.381 0.00 0.00 45.73 3.35
182 183 1.630148 CGACCTCACGGTTTGATCTC 58.370 55.000 0.00 0.00 45.73 2.75
194 195 2.649034 GACGAAGCACCGACCTCA 59.351 61.111 4.78 0.00 0.00 3.86
201 202 3.471399 GCTTACGGACGAAGCACC 58.529 61.111 17.53 0.00 46.97 5.01
213 214 2.526120 GGTGCGGAGATGCGCTTAC 61.526 63.158 19.26 10.07 44.60 2.34
236 237 0.171007 CGCAGCATGAACGGGAAATT 59.829 50.000 0.00 0.00 39.69 1.82
364 382 2.159000 CCCTAGTCATGTAAACGGGGAC 60.159 54.545 9.79 0.00 36.99 4.46
847 882 6.372937 TCAACTTTCTTGTACAACACATGTCA 59.627 34.615 3.59 0.00 42.70 3.58
848 883 6.687105 GTCAACTTTCTTGTACAACACATGTC 59.313 38.462 3.59 0.00 42.70 3.06
849 884 6.150307 TGTCAACTTTCTTGTACAACACATGT 59.850 34.615 3.59 0.00 46.36 3.21
850 885 6.550843 TGTCAACTTTCTTGTACAACACATG 58.449 36.000 3.59 0.00 36.90 3.21
851 886 6.751514 TGTCAACTTTCTTGTACAACACAT 57.248 33.333 3.59 0.00 36.90 3.21
852 887 6.561737 TTGTCAACTTTCTTGTACAACACA 57.438 33.333 3.59 0.00 34.51 3.72
904 939 4.658786 AACGGTCCCCCAGAGGCT 62.659 66.667 0.00 0.00 0.00 4.58
921 957 0.912487 ATAAAGGGGCCTCACACGGA 60.912 55.000 4.79 0.00 0.00 4.69
954 990 1.150536 GAACAGACCTGGCCAACCA 59.849 57.895 7.01 0.00 46.51 3.67
985 1021 0.108329 AACATCAACTAGTCGGCGGG 60.108 55.000 7.21 0.00 0.00 6.13
1033 1069 4.310022 TCCCAATTACCAAGGACGATTT 57.690 40.909 0.00 0.00 0.00 2.17
1035 1071 3.820557 CATCCCAATTACCAAGGACGAT 58.179 45.455 0.00 0.00 0.00 3.73
1036 1072 2.682563 GCATCCCAATTACCAAGGACGA 60.683 50.000 0.00 0.00 0.00 4.20
1037 1073 1.676006 GCATCCCAATTACCAAGGACG 59.324 52.381 0.00 0.00 0.00 4.79
1038 1074 2.427095 GTGCATCCCAATTACCAAGGAC 59.573 50.000 0.00 0.00 0.00 3.85
1039 1075 2.733956 GTGCATCCCAATTACCAAGGA 58.266 47.619 0.00 0.00 0.00 3.36
1040 1076 1.405105 CGTGCATCCCAATTACCAAGG 59.595 52.381 0.00 0.00 0.00 3.61
1041 1077 1.405105 CCGTGCATCCCAATTACCAAG 59.595 52.381 0.00 0.00 0.00 3.61
1042 1078 1.272203 ACCGTGCATCCCAATTACCAA 60.272 47.619 0.00 0.00 0.00 3.67
1043 1079 0.329931 ACCGTGCATCCCAATTACCA 59.670 50.000 0.00 0.00 0.00 3.25
1044 1080 0.738389 CACCGTGCATCCCAATTACC 59.262 55.000 0.00 0.00 0.00 2.85
1045 1081 1.459450 ACACCGTGCATCCCAATTAC 58.541 50.000 0.00 0.00 0.00 1.89
1046 1082 2.088423 GAACACCGTGCATCCCAATTA 58.912 47.619 0.00 0.00 0.00 1.40
1047 1083 0.887933 GAACACCGTGCATCCCAATT 59.112 50.000 0.00 0.00 0.00 2.32
1048 1084 0.965363 GGAACACCGTGCATCCCAAT 60.965 55.000 11.31 0.00 0.00 3.16
1049 1085 1.602323 GGAACACCGTGCATCCCAA 60.602 57.895 11.31 0.00 0.00 4.12
1050 1086 2.033448 GGAACACCGTGCATCCCA 59.967 61.111 11.31 0.00 0.00 4.37
1051 1087 2.033448 TGGAACACCGTGCATCCC 59.967 61.111 17.17 6.76 0.00 3.85
1052 1088 0.036765 TACTGGAACACCGTGCATCC 60.037 55.000 14.33 14.33 0.00 3.51
1053 1089 1.803334 TTACTGGAACACCGTGCATC 58.197 50.000 0.00 0.00 0.00 3.91
1054 1090 2.264005 TTTACTGGAACACCGTGCAT 57.736 45.000 0.00 0.00 0.00 3.96
1055 1091 2.039818 TTTTACTGGAACACCGTGCA 57.960 45.000 0.00 0.00 0.00 4.57
1073 1109 3.019564 CTCCTCTCAATGGGCGATTTTT 58.980 45.455 0.00 0.00 0.00 1.94
1074 1110 2.648059 CTCCTCTCAATGGGCGATTTT 58.352 47.619 0.00 0.00 0.00 1.82
1329 1814 1.539869 AAGGAGAGGAGGCTTGCCA 60.540 57.895 14.54 0.00 0.00 4.92
1938 3455 2.054453 GCCAAGGCCACCATCTTCC 61.054 63.158 5.01 0.00 34.56 3.46
2272 6491 5.972107 ACAAAATATCCTATCATGCTGCC 57.028 39.130 0.00 0.00 0.00 4.85
2309 6533 3.021695 CACTCATGGATGGCATTTCACT 58.978 45.455 0.00 0.00 0.00 3.41
2310 6534 2.756760 ACACTCATGGATGGCATTTCAC 59.243 45.455 0.00 0.00 0.00 3.18
2324 6555 4.847198 TCAACCATCAGCATAACACTCAT 58.153 39.130 0.00 0.00 0.00 2.90
2474 6837 2.808202 GCAGAGCTCTTCCACAAGTGAA 60.808 50.000 15.27 0.00 0.00 3.18
2640 7166 7.587037 ATTCACACAAGAAAAGATCCTTTCA 57.413 32.000 17.08 0.00 37.70 2.69
2657 7190 8.827677 GGAGTATTACCATAAGACAATTCACAC 58.172 37.037 0.00 0.00 0.00 3.82
2687 7222 4.346709 TGTTGAGTCACTTATTCTGGGACA 59.653 41.667 0.00 0.00 0.00 4.02
2688 7223 4.894784 TGTTGAGTCACTTATTCTGGGAC 58.105 43.478 0.00 0.00 0.00 4.46
2689 7224 5.762179 ATGTTGAGTCACTTATTCTGGGA 57.238 39.130 0.00 0.00 0.00 4.37
2690 7225 5.392380 GCAATGTTGAGTCACTTATTCTGGG 60.392 44.000 0.00 0.00 0.00 4.45
2691 7226 5.181811 TGCAATGTTGAGTCACTTATTCTGG 59.818 40.000 0.00 0.00 0.00 3.86
2692 7227 6.072838 AGTGCAATGTTGAGTCACTTATTCTG 60.073 38.462 0.00 0.00 34.69 3.02
2693 7228 6.000219 AGTGCAATGTTGAGTCACTTATTCT 59.000 36.000 0.00 0.00 34.69 2.40
2694 7229 6.246420 AGTGCAATGTTGAGTCACTTATTC 57.754 37.500 0.00 0.00 34.69 1.75
2695 7230 7.445402 AGTTAGTGCAATGTTGAGTCACTTATT 59.555 33.333 0.00 0.00 38.71 1.40
2696 7231 6.936900 AGTTAGTGCAATGTTGAGTCACTTAT 59.063 34.615 0.00 0.00 38.71 1.73
2697 7232 6.288294 AGTTAGTGCAATGTTGAGTCACTTA 58.712 36.000 0.00 0.46 38.71 2.24
2698 7233 5.126067 AGTTAGTGCAATGTTGAGTCACTT 58.874 37.500 0.00 0.00 38.71 3.16
2699 7234 4.708177 AGTTAGTGCAATGTTGAGTCACT 58.292 39.130 0.00 8.72 40.60 3.41
2700 7235 5.424121 AAGTTAGTGCAATGTTGAGTCAC 57.576 39.130 0.00 0.00 0.00 3.67
2701 7236 6.765989 ACTAAAGTTAGTGCAATGTTGAGTCA 59.234 34.615 0.00 0.00 42.13 3.41
2702 7237 7.190920 ACTAAAGTTAGTGCAATGTTGAGTC 57.809 36.000 0.00 0.00 42.13 3.36
2703 7238 8.084590 GTACTAAAGTTAGTGCAATGTTGAGT 57.915 34.615 12.92 0.00 43.22 3.41
2713 7248 8.139521 ACTCAACTTTGTACTAAAGTTAGTGC 57.860 34.615 23.56 12.00 45.57 4.40
2714 7249 9.309516 TGACTCAACTTTGTACTAAAGTTAGTG 57.690 33.333 23.56 20.26 45.57 2.74
2715 7250 9.310716 GTGACTCAACTTTGTACTAAAGTTAGT 57.689 33.333 23.56 23.28 45.57 2.24
2716 7251 9.530633 AGTGACTCAACTTTGTACTAAAGTTAG 57.469 33.333 23.56 21.61 45.57 2.34
2717 7252 9.880157 AAGTGACTCAACTTTGTACTAAAGTTA 57.120 29.630 23.56 15.88 45.57 2.24
2724 7259 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2725 7260 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2726 7261 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2727 7262 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2728 7263 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2729 7264 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2730 7265 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2731 7266 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2732 7267 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2733 7268 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2734 7269 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2735 7270 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2736 7271 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2737 7272 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2738 7273 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2739 7274 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2740 7275 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2741 7276 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2742 7277 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2743 7278 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2744 7279 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2745 7280 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2746 7281 1.835531 GAATACTCCCTCCGTCCCAAA 59.164 52.381 0.00 0.00 0.00 3.28
2747 7282 1.273381 TGAATACTCCCTCCGTCCCAA 60.273 52.381 0.00 0.00 0.00 4.12
2748 7283 0.337082 TGAATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
2749 7284 1.041437 CTGAATACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
2750 7285 1.777941 ACTGAATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2751 7286 3.315749 CAGTACTGAATACTCCCTCCGTC 59.684 52.174 18.45 0.00 42.62 4.79
2752 7287 3.288964 CAGTACTGAATACTCCCTCCGT 58.711 50.000 18.45 0.00 42.62 4.69
2753 7288 2.623889 CCAGTACTGAATACTCCCTCCG 59.376 54.545 24.68 0.00 42.62 4.63
2754 7289 3.637694 GTCCAGTACTGAATACTCCCTCC 59.362 52.174 24.68 0.00 42.62 4.30
2755 7290 3.637694 GGTCCAGTACTGAATACTCCCTC 59.362 52.174 24.68 3.15 42.62 4.30
2756 7291 3.012502 TGGTCCAGTACTGAATACTCCCT 59.987 47.826 24.68 0.00 42.62 4.20
2757 7292 3.132467 GTGGTCCAGTACTGAATACTCCC 59.868 52.174 24.68 12.10 42.62 4.30
2758 7293 3.767673 TGTGGTCCAGTACTGAATACTCC 59.232 47.826 24.68 15.19 42.62 3.85
2759 7294 5.000012 CTGTGGTCCAGTACTGAATACTC 58.000 47.826 24.68 14.60 42.62 2.59
2778 7313 6.112734 TGTGTAACATTGTCAAGAGAACTGT 58.887 36.000 0.00 0.00 45.67 3.55
2842 7414 8.923683 AGAGTGTAATTAACTTTAAGCTTCGAC 58.076 33.333 0.00 0.00 0.00 4.20
2859 7431 7.669722 TCCAGCTTCCAATTAAAAGAGTGTAAT 59.330 33.333 3.75 0.00 0.00 1.89
2935 7513 2.872038 GCAAACGAACTCCTCACCTCAT 60.872 50.000 0.00 0.00 0.00 2.90
3101 7735 9.088987 AGTATAAAATGTCAGAAACCCAACAAT 57.911 29.630 0.00 0.00 0.00 2.71
3129 7764 5.563592 TCCATCACCAATGCCAATATCTAG 58.436 41.667 0.00 0.00 33.71 2.43
3153 7788 1.267806 CAACACTTCACCTGCACCATC 59.732 52.381 0.00 0.00 0.00 3.51
3179 7814 4.214310 TCACCAAACAACCATCTCACATT 58.786 39.130 0.00 0.00 0.00 2.71
3402 8060 4.460948 TCGGGTTCTTATGTTCTGGTAC 57.539 45.455 0.00 0.00 0.00 3.34
3422 8095 6.366877 TGTGCTAACGGAAACTGTACTAATTC 59.633 38.462 0.00 0.00 0.00 2.17
3551 8341 7.848223 TGTATGAACCTAATCAATGTGACAG 57.152 36.000 0.00 0.00 32.06 3.51
3637 8436 4.100808 AGAAGTCAGAACAGAGCTTTGAGT 59.899 41.667 11.85 0.00 0.00 3.41
3656 8455 9.643693 ATTTAAAACTTCACATGGCATTAGAAG 57.356 29.630 25.55 25.55 41.00 2.85
3657 8456 9.421806 CATTTAAAACTTCACATGGCATTAGAA 57.578 29.630 0.00 4.19 0.00 2.10
3658 8457 8.034215 CCATTTAAAACTTCACATGGCATTAGA 58.966 33.333 0.00 0.00 0.00 2.10
3740 8542 5.523916 ACAACTACTCACAAAGCAACTAGTG 59.476 40.000 0.00 0.00 0.00 2.74
3744 8546 5.671493 AGTACAACTACTCACAAAGCAACT 58.329 37.500 0.00 0.00 0.00 3.16
3748 8550 5.753921 ACTGAAGTACAACTACTCACAAAGC 59.246 40.000 0.00 0.00 31.42 3.51
3749 8551 7.772332 AACTGAAGTACAACTACTCACAAAG 57.228 36.000 0.00 0.00 31.42 2.77
3750 8552 9.826574 ATAAACTGAAGTACAACTACTCACAAA 57.173 29.630 0.00 0.00 31.42 2.83
3816 8619 7.106439 TGGCAAAACATCAGAAAGTAAGAAA 57.894 32.000 0.00 0.00 0.00 2.52
3817 8620 6.707440 TGGCAAAACATCAGAAAGTAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
3819 8622 7.951530 AAATGGCAAAACATCAGAAAGTAAG 57.048 32.000 0.00 0.00 0.00 2.34
3821 8624 9.023962 AGATAAATGGCAAAACATCAGAAAGTA 57.976 29.630 0.00 0.00 0.00 2.24
3822 8625 7.899973 AGATAAATGGCAAAACATCAGAAAGT 58.100 30.769 0.00 0.00 0.00 2.66
3823 8626 7.490402 GGAGATAAATGGCAAAACATCAGAAAG 59.510 37.037 0.00 0.00 0.00 2.62
3824 8627 7.322664 GGAGATAAATGGCAAAACATCAGAAA 58.677 34.615 0.00 0.00 0.00 2.52
3825 8628 6.127366 GGGAGATAAATGGCAAAACATCAGAA 60.127 38.462 0.00 0.00 0.00 3.02
3826 8629 5.360714 GGGAGATAAATGGCAAAACATCAGA 59.639 40.000 0.00 0.00 0.00 3.27
3827 8630 5.452356 GGGGAGATAAATGGCAAAACATCAG 60.452 44.000 0.00 0.00 0.00 2.90
3828 8631 4.405358 GGGGAGATAAATGGCAAAACATCA 59.595 41.667 0.00 0.00 0.00 3.07
3829 8632 4.405358 TGGGGAGATAAATGGCAAAACATC 59.595 41.667 0.00 0.00 0.00 3.06
3830 8633 4.360889 TGGGGAGATAAATGGCAAAACAT 58.639 39.130 0.00 0.00 0.00 2.71
3831 8634 3.768757 CTGGGGAGATAAATGGCAAAACA 59.231 43.478 0.00 0.00 0.00 2.83
3832 8635 3.769300 ACTGGGGAGATAAATGGCAAAAC 59.231 43.478 0.00 0.00 0.00 2.43
3833 8636 3.768757 CACTGGGGAGATAAATGGCAAAA 59.231 43.478 0.00 0.00 0.00 2.44
3834 8637 3.011144 TCACTGGGGAGATAAATGGCAAA 59.989 43.478 0.00 0.00 0.00 3.68
3835 8638 2.580322 TCACTGGGGAGATAAATGGCAA 59.420 45.455 0.00 0.00 0.00 4.52
3836 8639 2.204463 TCACTGGGGAGATAAATGGCA 58.796 47.619 0.00 0.00 0.00 4.92
3837 8640 3.515602 ATCACTGGGGAGATAAATGGC 57.484 47.619 0.00 0.00 0.00 4.40
3842 8645 9.905713 GCAATATAAATATCACTGGGGAGATAA 57.094 33.333 0.00 0.00 31.04 1.75
3843 8646 9.056799 TGCAATATAAATATCACTGGGGAGATA 57.943 33.333 0.00 0.00 31.62 1.98
3844 8647 7.831193 GTGCAATATAAATATCACTGGGGAGAT 59.169 37.037 0.00 0.00 0.00 2.75
3845 8648 7.168219 GTGCAATATAAATATCACTGGGGAGA 58.832 38.462 0.00 0.00 0.00 3.71
3846 8649 6.942005 TGTGCAATATAAATATCACTGGGGAG 59.058 38.462 0.00 0.00 0.00 4.30
3847 8650 6.846988 TGTGCAATATAAATATCACTGGGGA 58.153 36.000 0.00 0.00 0.00 4.81
3848 8651 7.541162 CATGTGCAATATAAATATCACTGGGG 58.459 38.462 0.00 0.00 0.00 4.96
3849 8652 7.031372 GCATGTGCAATATAAATATCACTGGG 58.969 38.462 0.00 0.00 41.59 4.45
3850 8653 7.753580 CAGCATGTGCAATATAAATATCACTGG 59.246 37.037 7.83 0.00 45.16 4.00
3851 8654 8.669394 CAGCATGTGCAATATAAATATCACTG 57.331 34.615 7.83 0.00 45.16 3.66
3887 8690 7.499895 AGTGACGGGAAAAATACTTAACAGAAA 59.500 33.333 0.00 0.00 0.00 2.52
3888 8691 6.993902 AGTGACGGGAAAAATACTTAACAGAA 59.006 34.615 0.00 0.00 0.00 3.02
3889 8692 6.425721 CAGTGACGGGAAAAATACTTAACAGA 59.574 38.462 0.00 0.00 0.00 3.41
3890 8693 6.599437 CAGTGACGGGAAAAATACTTAACAG 58.401 40.000 0.00 0.00 0.00 3.16
3891 8694 5.049267 GCAGTGACGGGAAAAATACTTAACA 60.049 40.000 0.00 0.00 0.00 2.41
3904 8707 1.271856 TCCTTAATGCAGTGACGGGA 58.728 50.000 0.00 0.00 0.00 5.14
3921 8724 9.903682 CAACAATCCAATCAGTTATATGATTCC 57.096 33.333 0.00 0.00 44.68 3.01
3948 8752 7.554835 CCTGCAACTTAACCATACCTACATAAA 59.445 37.037 0.00 0.00 0.00 1.40
3978 8782 9.715121 AAAATACGAAAAACTACACAGATAGGA 57.285 29.630 0.00 0.00 0.00 2.94
4066 8870 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4067 8871 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4082 8886 9.654663 AAGTTTTAGTGATCTAAACGCTCTTAT 57.345 29.630 0.00 0.00 43.20 1.73
4084 8888 7.964604 AAGTTTTAGTGATCTAAACGCTCTT 57.035 32.000 0.00 2.42 43.20 2.85
4085 8889 9.654663 AATAAGTTTTAGTGATCTAAACGCTCT 57.345 29.630 0.00 0.00 43.20 4.09
4114 8918 4.566004 TCCTGCAAGTGTGTACTTCATAC 58.434 43.478 0.00 0.00 45.12 2.39
4115 8919 4.882842 TCCTGCAAGTGTGTACTTCATA 57.117 40.909 0.00 0.00 45.12 2.15
4116 8920 3.769739 TCCTGCAAGTGTGTACTTCAT 57.230 42.857 0.00 0.00 45.12 2.57
4117 8921 3.202906 GTTCCTGCAAGTGTGTACTTCA 58.797 45.455 0.00 0.00 45.12 3.02
4118 8922 2.221055 CGTTCCTGCAAGTGTGTACTTC 59.779 50.000 0.00 0.00 45.12 3.01
4120 8924 1.411246 TCGTTCCTGCAAGTGTGTACT 59.589 47.619 0.00 0.00 39.32 2.73
4121 8925 1.860676 TCGTTCCTGCAAGTGTGTAC 58.139 50.000 0.00 0.00 0.00 2.90
4122 8926 2.605837 TTCGTTCCTGCAAGTGTGTA 57.394 45.000 0.00 0.00 0.00 2.90
4123 8927 1.745232 TTTCGTTCCTGCAAGTGTGT 58.255 45.000 0.00 0.00 0.00 3.72
4124 8928 3.044986 CAATTTCGTTCCTGCAAGTGTG 58.955 45.455 0.00 0.00 0.00 3.82
4125 8929 2.034558 CCAATTTCGTTCCTGCAAGTGT 59.965 45.455 0.00 0.00 0.00 3.55
4126 8930 2.034558 ACCAATTTCGTTCCTGCAAGTG 59.965 45.455 0.00 0.00 0.00 3.16
4127 8931 2.306847 ACCAATTTCGTTCCTGCAAGT 58.693 42.857 0.00 0.00 0.00 3.16
4128 8932 3.369546 AACCAATTTCGTTCCTGCAAG 57.630 42.857 0.00 0.00 0.00 4.01
4129 8933 4.764823 AGATAACCAATTTCGTTCCTGCAA 59.235 37.500 0.00 0.00 0.00 4.08
4130 8934 4.331968 AGATAACCAATTTCGTTCCTGCA 58.668 39.130 0.00 0.00 0.00 4.41
4131 8935 4.965119 AGATAACCAATTTCGTTCCTGC 57.035 40.909 0.00 0.00 0.00 4.85
4132 8936 6.254281 ACAAGATAACCAATTTCGTTCCTG 57.746 37.500 0.00 0.00 0.00 3.86
4133 8937 6.894339 AACAAGATAACCAATTTCGTTCCT 57.106 33.333 0.00 0.00 0.00 3.36
4134 8938 6.745907 GCTAACAAGATAACCAATTTCGTTCC 59.254 38.462 0.00 0.00 0.00 3.62
4135 8939 7.527457 AGCTAACAAGATAACCAATTTCGTTC 58.473 34.615 0.00 0.00 0.00 3.95
4136 8940 7.390718 AGAGCTAACAAGATAACCAATTTCGTT 59.609 33.333 0.00 0.00 0.00 3.85
4137 8941 6.879458 AGAGCTAACAAGATAACCAATTTCGT 59.121 34.615 0.00 0.00 0.00 3.85
4138 8942 7.064609 TGAGAGCTAACAAGATAACCAATTTCG 59.935 37.037 0.00 0.00 0.00 3.46
4139 8943 8.178313 GTGAGAGCTAACAAGATAACCAATTTC 58.822 37.037 0.00 0.00 0.00 2.17
4140 8944 7.885399 AGTGAGAGCTAACAAGATAACCAATTT 59.115 33.333 0.00 0.00 0.00 1.82
4141 8945 7.335422 CAGTGAGAGCTAACAAGATAACCAATT 59.665 37.037 0.00 0.00 0.00 2.32
4142 8946 6.820656 CAGTGAGAGCTAACAAGATAACCAAT 59.179 38.462 0.00 0.00 0.00 3.16
4143 8947 6.166279 CAGTGAGAGCTAACAAGATAACCAA 58.834 40.000 0.00 0.00 0.00 3.67
4144 8948 5.246203 ACAGTGAGAGCTAACAAGATAACCA 59.754 40.000 0.00 0.00 0.00 3.67
4145 8949 5.725362 ACAGTGAGAGCTAACAAGATAACC 58.275 41.667 0.00 0.00 0.00 2.85
4146 8950 8.030106 AGTAACAGTGAGAGCTAACAAGATAAC 58.970 37.037 0.00 0.00 0.00 1.89
4147 8951 8.123639 AGTAACAGTGAGAGCTAACAAGATAA 57.876 34.615 0.00 0.00 0.00 1.75
4148 8952 7.148052 GGAGTAACAGTGAGAGCTAACAAGATA 60.148 40.741 0.00 0.00 0.00 1.98
4149 8953 6.350612 GGAGTAACAGTGAGAGCTAACAAGAT 60.351 42.308 0.00 0.00 0.00 2.40
4150 8954 5.047943 GGAGTAACAGTGAGAGCTAACAAGA 60.048 44.000 0.00 0.00 0.00 3.02
4151 8955 5.164954 GGAGTAACAGTGAGAGCTAACAAG 58.835 45.833 0.00 0.00 0.00 3.16
4152 8956 4.321008 CGGAGTAACAGTGAGAGCTAACAA 60.321 45.833 0.00 0.00 0.00 2.83
4153 8957 3.190744 CGGAGTAACAGTGAGAGCTAACA 59.809 47.826 0.00 0.00 0.00 2.41
4154 8958 3.427773 CCGGAGTAACAGTGAGAGCTAAC 60.428 52.174 0.00 0.00 0.00 2.34
4155 8959 2.753452 CCGGAGTAACAGTGAGAGCTAA 59.247 50.000 0.00 0.00 0.00 3.09
4156 8960 2.290768 ACCGGAGTAACAGTGAGAGCTA 60.291 50.000 9.46 0.00 0.00 3.32
4157 8961 1.178276 CCGGAGTAACAGTGAGAGCT 58.822 55.000 0.00 0.00 0.00 4.09
4158 8962 0.889306 ACCGGAGTAACAGTGAGAGC 59.111 55.000 9.46 0.00 0.00 4.09
4159 8963 2.095161 GTCACCGGAGTAACAGTGAGAG 60.095 54.545 9.46 0.00 39.76 3.20
4160 8964 1.884579 GTCACCGGAGTAACAGTGAGA 59.115 52.381 9.46 0.00 39.76 3.27
4161 8965 1.067776 GGTCACCGGAGTAACAGTGAG 60.068 57.143 9.46 0.00 39.76 3.51
4162 8966 0.963962 GGTCACCGGAGTAACAGTGA 59.036 55.000 9.46 0.00 36.92 3.41
4163 8967 0.677288 TGGTCACCGGAGTAACAGTG 59.323 55.000 9.46 0.00 0.00 3.66
4164 8968 1.069668 GTTGGTCACCGGAGTAACAGT 59.930 52.381 9.46 0.00 0.00 3.55
4165 8969 1.607251 GGTTGGTCACCGGAGTAACAG 60.607 57.143 9.46 0.00 35.12 3.16
4166 8970 0.393820 GGTTGGTCACCGGAGTAACA 59.606 55.000 9.46 0.00 35.12 2.41
4167 8971 3.222053 GGTTGGTCACCGGAGTAAC 57.778 57.895 9.46 8.09 35.12 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.