Multiple sequence alignment - TraesCS3B01G480400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G480400 chr3B 100.000 3185 0 0 1 3185 728505568 728502384 0.000000e+00 5882.0
1 TraesCS3B01G480400 chr3B 81.019 1217 163 42 982 2176 728585856 728584686 0.000000e+00 905.0
2 TraesCS3B01G480400 chr3B 80.258 1165 159 45 1026 2176 728754011 728752904 0.000000e+00 811.0
3 TraesCS3B01G480400 chr3B 79.668 1205 176 34 982 2177 727740594 727741738 0.000000e+00 804.0
4 TraesCS3B01G480400 chr3B 79.726 1169 165 43 1018 2172 728890689 728889579 0.000000e+00 780.0
5 TraesCS3B01G480400 chr3B 79.001 1181 187 30 982 2139 727786519 727787661 0.000000e+00 750.0
6 TraesCS3B01G480400 chr3B 77.426 1041 157 44 1135 2160 605912626 605911649 1.670000e-152 549.0
7 TraesCS3B01G480400 chr3B 76.731 881 132 38 1274 2150 728617857 728617046 1.060000e-114 424.0
8 TraesCS3B01G480400 chr3B 76.864 778 125 31 1376 2139 727794133 727794869 3.850000e-104 388.0
9 TraesCS3B01G480400 chr3B 76.358 681 108 38 2514 3180 728889553 728888912 1.840000e-82 316.0
10 TraesCS3B01G480400 chr3B 77.331 472 70 30 2556 3006 727789173 727789628 8.830000e-61 244.0
11 TraesCS3B01G480400 chr3B 97.101 69 2 0 2622 2690 787272675 787272607 2.010000e-22 117.0
12 TraesCS3B01G480400 chr3D 95.054 930 18 7 1 909 549057829 549056907 0.000000e+00 1437.0
13 TraesCS3B01G480400 chr3D 80.050 1208 170 37 980 2177 548694331 548695477 0.000000e+00 830.0
14 TraesCS3B01G480400 chr3D 80.188 1171 172 35 1021 2176 549074044 549072919 0.000000e+00 822.0
15 TraesCS3B01G480400 chr3D 87.308 717 68 14 981 1688 549056872 549056170 0.000000e+00 798.0
16 TraesCS3B01G480400 chr3D 79.863 1172 154 46 1026 2180 549127180 549126074 0.000000e+00 782.0
17 TraesCS3B01G480400 chr3D 79.139 1184 183 32 982 2139 548725551 548726696 0.000000e+00 760.0
18 TraesCS3B01G480400 chr3D 78.974 1189 176 38 981 2154 549468016 549466887 0.000000e+00 743.0
19 TraesCS3B01G480400 chr3D 78.571 1218 175 45 982 2177 548711731 548712884 0.000000e+00 725.0
20 TraesCS3B01G480400 chr3D 78.383 1212 189 42 981 2181 549349810 549348661 0.000000e+00 719.0
21 TraesCS3B01G480400 chr3D 90.562 498 38 7 2687 3180 549052394 549051902 0.000000e+00 651.0
22 TraesCS3B01G480400 chr3D 85.207 507 62 7 1717 2221 549053180 549052685 2.830000e-140 508.0
23 TraesCS3B01G480400 chr3D 76.304 920 125 45 1271 2178 549109532 549108694 3.830000e-109 405.0
24 TraesCS3B01G480400 chr3D 81.356 472 65 14 2715 3180 458884614 458884160 2.340000e-96 363.0
25 TraesCS3B01G480400 chr3D 92.245 245 15 1 2387 2627 549052666 549052422 8.460000e-91 344.0
26 TraesCS3B01G480400 chr3D 76.677 626 96 31 2514 3124 549464152 549463562 5.160000e-78 302.0
27 TraesCS3B01G480400 chr3D 80.864 324 51 9 2687 3006 548726968 548727284 8.830000e-61 244.0
28 TraesCS3B01G480400 chr3D 86.667 120 14 2 2508 2627 548695495 548695612 7.170000e-27 132.0
29 TraesCS3B01G480400 chr3D 93.103 58 4 0 152 209 580128432 580128489 5.660000e-13 86.1
30 TraesCS3B01G480400 chr3A 85.817 1248 144 24 981 2221 686535350 686534129 0.000000e+00 1293.0
31 TraesCS3B01G480400 chr3A 79.421 1210 170 44 981 2172 686749857 686748709 0.000000e+00 782.0
32 TraesCS3B01G480400 chr3A 79.256 1210 175 38 980 2177 686183071 686184216 0.000000e+00 774.0
33 TraesCS3B01G480400 chr3A 78.882 1217 178 48 981 2180 601133971 601132817 0.000000e+00 750.0
34 TraesCS3B01G480400 chr3A 78.970 1184 185 35 982 2139 686189713 686190858 0.000000e+00 749.0
35 TraesCS3B01G480400 chr3A 86.255 502 41 10 2688 3185 686533835 686533358 1.310000e-143 520.0
36 TraesCS3B01G480400 chr3A 93.548 279 13 2 635 909 686535664 686535387 8.220000e-111 411.0
37 TraesCS3B01G480400 chr3A 77.405 686 104 33 2514 3180 686748683 686748030 8.400000e-96 361.0
38 TraesCS3B01G480400 chr3A 90.361 249 14 7 2387 2627 686534110 686533864 5.130000e-83 318.0
39 TraesCS3B01G480400 chr3A 82.424 330 44 10 2689 3009 686549338 686549014 3.130000e-70 276.0
40 TraesCS3B01G480400 chr3A 80.247 324 53 9 2687 3006 686191376 686191692 1.910000e-57 233.0
41 TraesCS3B01G480400 chr3A 85.833 120 15 2 2508 2627 686184234 686184351 3.340000e-25 126.0
42 TraesCS3B01G480400 chr3A 86.486 111 8 5 2514 2624 686538103 686538000 7.220000e-22 115.0
43 TraesCS3B01G480400 chr7B 79.266 1172 169 34 1018 2172 543187023 543188137 0.000000e+00 750.0
44 TraesCS3B01G480400 chr7B 76.637 672 101 38 2514 3172 543188163 543188791 1.430000e-83 320.0
45 TraesCS3B01G480400 chr7B 97.260 73 2 0 2618 2690 639796289 639796217 1.200000e-24 124.0
46 TraesCS3B01G480400 chr5B 92.045 88 5 2 2605 2690 665811648 665811735 4.310000e-24 122.0
47 TraesCS3B01G480400 chr6A 97.143 70 2 0 2621 2690 190660437 190660368 5.580000e-23 119.0
48 TraesCS3B01G480400 chr6A 97.143 70 2 0 2621 2690 190738360 190738291 5.580000e-23 119.0
49 TraesCS3B01G480400 chr5D 97.143 70 2 0 2621 2690 446918258 446918189 5.580000e-23 119.0
50 TraesCS3B01G480400 chr2B 94.737 76 3 1 2616 2690 354879218 354879143 2.010000e-22 117.0
51 TraesCS3B01G480400 chr2A 94.737 76 3 1 2616 2690 361381610 361381685 2.010000e-22 117.0
52 TraesCS3B01G480400 chr2A 86.047 86 11 1 152 237 539397533 539397617 1.220000e-14 91.6
53 TraesCS3B01G480400 chr1D 92.771 83 3 3 2612 2691 59868043 59867961 2.010000e-22 117.0
54 TraesCS3B01G480400 chr2D 87.805 82 9 1 159 240 616500073 616499993 9.410000e-16 95.3
55 TraesCS3B01G480400 chr2D 89.041 73 8 0 155 227 520511908 520511980 1.220000e-14 91.6
56 TraesCS3B01G480400 chr2D 83.721 86 13 1 152 237 402310900 402310984 2.630000e-11 80.5
57 TraesCS3B01G480400 chr2D 83.721 86 13 1 152 237 612545178 612545094 2.630000e-11 80.5
58 TraesCS3B01G480400 chr6D 86.250 80 11 0 158 237 466624653 466624574 1.570000e-13 87.9
59 TraesCS3B01G480400 chr6B 86.842 76 8 2 152 227 20018436 20018509 2.040000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G480400 chr3B 728502384 728505568 3184 True 5882.0 5882 100.0000 1 3185 1 chr3B.!!$R2 3184
1 TraesCS3B01G480400 chr3B 728584686 728585856 1170 True 905.0 905 81.0190 982 2176 1 chr3B.!!$R3 1194
2 TraesCS3B01G480400 chr3B 728752904 728754011 1107 True 811.0 811 80.2580 1026 2176 1 chr3B.!!$R5 1150
3 TraesCS3B01G480400 chr3B 727740594 727741738 1144 False 804.0 804 79.6680 982 2177 1 chr3B.!!$F1 1195
4 TraesCS3B01G480400 chr3B 605911649 605912626 977 True 549.0 549 77.4260 1135 2160 1 chr3B.!!$R1 1025
5 TraesCS3B01G480400 chr3B 728888912 728890689 1777 True 548.0 780 78.0420 1018 3180 2 chr3B.!!$R7 2162
6 TraesCS3B01G480400 chr3B 727786519 727789628 3109 False 497.0 750 78.1660 982 3006 2 chr3B.!!$F3 2024
7 TraesCS3B01G480400 chr3B 728617046 728617857 811 True 424.0 424 76.7310 1274 2150 1 chr3B.!!$R4 876
8 TraesCS3B01G480400 chr3B 727794133 727794869 736 False 388.0 388 76.8640 1376 2139 1 chr3B.!!$F2 763
9 TraesCS3B01G480400 chr3D 549072919 549074044 1125 True 822.0 822 80.1880 1021 2176 1 chr3D.!!$R2 1155
10 TraesCS3B01G480400 chr3D 549126074 549127180 1106 True 782.0 782 79.8630 1026 2180 1 chr3D.!!$R4 1154
11 TraesCS3B01G480400 chr3D 549051902 549057829 5927 True 747.6 1437 90.0752 1 3180 5 chr3D.!!$R6 3179
12 TraesCS3B01G480400 chr3D 548711731 548712884 1153 False 725.0 725 78.5710 982 2177 1 chr3D.!!$F1 1195
13 TraesCS3B01G480400 chr3D 549348661 549349810 1149 True 719.0 719 78.3830 981 2181 1 chr3D.!!$R5 1200
14 TraesCS3B01G480400 chr3D 549463562 549468016 4454 True 522.5 743 77.8255 981 3124 2 chr3D.!!$R7 2143
15 TraesCS3B01G480400 chr3D 548725551 548727284 1733 False 502.0 760 80.0015 982 3006 2 chr3D.!!$F4 2024
16 TraesCS3B01G480400 chr3D 548694331 548695612 1281 False 481.0 830 83.3585 980 2627 2 chr3D.!!$F3 1647
17 TraesCS3B01G480400 chr3D 549108694 549109532 838 True 405.0 405 76.3040 1271 2178 1 chr3D.!!$R3 907
18 TraesCS3B01G480400 chr3A 601132817 601133971 1154 True 750.0 750 78.8820 981 2180 1 chr3A.!!$R1 1199
19 TraesCS3B01G480400 chr3A 686748030 686749857 1827 True 571.5 782 78.4130 981 3180 2 chr3A.!!$R4 2199
20 TraesCS3B01G480400 chr3A 686533358 686538103 4745 True 531.4 1293 88.4934 635 3185 5 chr3A.!!$R3 2550
21 TraesCS3B01G480400 chr3A 686189713 686191692 1979 False 491.0 749 79.6085 982 3006 2 chr3A.!!$F2 2024
22 TraesCS3B01G480400 chr3A 686183071 686184351 1280 False 450.0 774 82.5445 980 2627 2 chr3A.!!$F1 1647
23 TraesCS3B01G480400 chr7B 543187023 543188791 1768 False 535.0 750 77.9515 1018 3172 2 chr7B.!!$F1 2154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 2657 0.239082 CGTGTAACTTTTTCCCGGCC 59.761 55.0 0.0 0.0 31.75 6.13 F
1248 3094 0.037605 ATCACCCGTCTCCGTTTGTC 60.038 55.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 6739 0.173255 ATAATTGGGCGTGCAACTGC 59.827 50.0 0.00 0.0 42.5 4.40 R
2322 9908 0.251165 TTTTGCTAGCCCCACCAGTC 60.251 55.0 13.29 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 5.363939 TCTTGGCTTTTGTTTTTGGTATGG 58.636 37.500 0.00 0.00 0.00 2.74
95 96 4.762289 TGGCTTTTGTTTTTGGTATGGT 57.238 36.364 0.00 0.00 0.00 3.55
156 157 4.115516 TCAAATATGCTCTTCTGCTCGAC 58.884 43.478 0.00 0.00 0.00 4.20
198 199 2.623878 TGCTTTGTACTTCCGGTGAA 57.376 45.000 0.00 0.00 0.00 3.18
214 215 4.332819 CCGGTGAACTTTGACAATCTATCC 59.667 45.833 0.00 0.00 0.00 2.59
232 233 8.671384 ATCTATCCGGATCATTTTCGTAAAAA 57.329 30.769 23.08 0.00 38.66 1.94
352 353 4.201656 GGTTATGTTCTCGTTCTTTACCGC 60.202 45.833 0.00 0.00 0.00 5.68
353 354 2.512485 TGTTCTCGTTCTTTACCGCA 57.488 45.000 0.00 0.00 0.00 5.69
748 2556 7.277539 GCATTGTGGAAATCCGAAATAATTTCA 59.722 33.333 9.32 0.00 41.53 2.69
840 2648 6.818142 ACTAAACTGTAACCACGTGTAACTTT 59.182 34.615 15.65 9.04 31.75 2.66
849 2657 0.239082 CGTGTAACTTTTTCCCGGCC 59.761 55.000 0.00 0.00 31.75 6.13
909 2721 5.070001 CAGATGGTTTAGGAAGTGACCAAA 58.930 41.667 0.00 0.00 44.60 3.28
911 2723 3.558033 TGGTTTAGGAAGTGACCAAACC 58.442 45.455 16.77 16.77 43.22 3.27
912 2724 2.889045 GGTTTAGGAAGTGACCAAACCC 59.111 50.000 1.75 0.00 40.65 4.11
913 2725 3.436035 GGTTTAGGAAGTGACCAAACCCT 60.436 47.826 1.75 0.00 40.65 4.34
914 2726 4.212716 GTTTAGGAAGTGACCAAACCCTT 58.787 43.478 0.00 0.00 31.47 3.95
915 2727 2.364972 AGGAAGTGACCAAACCCTTG 57.635 50.000 0.00 0.00 0.00 3.61
916 2728 1.569072 AGGAAGTGACCAAACCCTTGT 59.431 47.619 0.00 0.00 0.00 3.16
917 2729 1.954382 GGAAGTGACCAAACCCTTGTC 59.046 52.381 0.00 0.00 0.00 3.18
918 2730 2.422945 GGAAGTGACCAAACCCTTGTCT 60.423 50.000 0.00 0.00 0.00 3.41
919 2731 2.640316 AGTGACCAAACCCTTGTCTC 57.360 50.000 0.00 0.00 0.00 3.36
920 2732 1.843851 AGTGACCAAACCCTTGTCTCA 59.156 47.619 0.00 0.00 0.00 3.27
921 2733 2.241176 AGTGACCAAACCCTTGTCTCAA 59.759 45.455 0.00 0.00 0.00 3.02
922 2734 3.020984 GTGACCAAACCCTTGTCTCAAA 58.979 45.455 0.00 0.00 0.00 2.69
923 2735 3.445805 GTGACCAAACCCTTGTCTCAAAA 59.554 43.478 0.00 0.00 0.00 2.44
924 2736 4.081917 GTGACCAAACCCTTGTCTCAAAAA 60.082 41.667 0.00 0.00 0.00 1.94
946 2758 3.398318 AAAAGGAAGTGACCAAACCCT 57.602 42.857 0.00 0.00 0.00 4.34
947 2759 3.398318 AAAGGAAGTGACCAAACCCTT 57.602 42.857 0.00 0.00 35.71 3.95
948 2760 4.529716 AAAGGAAGTGACCAAACCCTTA 57.470 40.909 0.00 0.00 34.00 2.69
949 2761 3.790089 AGGAAGTGACCAAACCCTTAG 57.210 47.619 0.00 0.00 0.00 2.18
950 2762 3.323775 AGGAAGTGACCAAACCCTTAGA 58.676 45.455 0.00 0.00 0.00 2.10
951 2763 3.328050 AGGAAGTGACCAAACCCTTAGAG 59.672 47.826 0.00 0.00 0.00 2.43
952 2764 3.326880 GGAAGTGACCAAACCCTTAGAGA 59.673 47.826 0.00 0.00 0.00 3.10
953 2765 4.563786 GGAAGTGACCAAACCCTTAGAGAG 60.564 50.000 0.00 0.00 0.00 3.20
954 2766 3.858135 AGTGACCAAACCCTTAGAGAGA 58.142 45.455 0.00 0.00 0.00 3.10
955 2767 4.232091 AGTGACCAAACCCTTAGAGAGAA 58.768 43.478 0.00 0.00 0.00 2.87
956 2768 4.284746 AGTGACCAAACCCTTAGAGAGAAG 59.715 45.833 0.00 0.00 0.00 2.85
957 2769 3.008049 TGACCAAACCCTTAGAGAGAAGC 59.992 47.826 0.00 0.00 0.00 3.86
958 2770 3.252351 ACCAAACCCTTAGAGAGAAGCT 58.748 45.455 0.00 0.00 0.00 3.74
959 2771 3.008485 ACCAAACCCTTAGAGAGAAGCTG 59.992 47.826 0.00 0.00 0.00 4.24
965 2777 1.066908 CTTAGAGAGAAGCTGAGCCCG 59.933 57.143 0.00 0.00 0.00 6.13
974 2786 2.055042 GCTGAGCCCGGAGAGAAGA 61.055 63.158 0.73 0.00 0.00 2.87
1004 2829 2.202797 CACGCGAGGGGAGATGTG 60.203 66.667 15.93 0.00 0.00 3.21
1068 2908 2.792599 GACGACGATCTGCTCCGT 59.207 61.111 0.00 0.00 42.17 4.69
1086 2926 0.827368 GTGAGATTCTCCTCCGCCTT 59.173 55.000 11.12 0.00 32.32 4.35
1090 2930 1.003573 ATTCTCCTCCGCCTTCCCT 59.996 57.895 0.00 0.00 0.00 4.20
1133 2973 1.078918 CATCCCTCGTCTGCAAGCA 60.079 57.895 0.00 0.00 0.00 3.91
1171 3011 0.748005 CGATCCCCAATTCCAACGCT 60.748 55.000 0.00 0.00 0.00 5.07
1203 3049 2.435586 CACGGCAAGCCTCCTCTG 60.436 66.667 9.73 0.00 0.00 3.35
1236 3082 2.977829 CGTCAACGATGTATATCACCCG 59.022 50.000 0.00 0.00 43.02 5.28
1248 3094 0.037605 ATCACCCGTCTCCGTTTGTC 60.038 55.000 0.00 0.00 0.00 3.18
1257 3103 1.626321 TCTCCGTTTGTCCCAATGCTA 59.374 47.619 0.00 0.00 0.00 3.49
1348 3200 1.369625 CCGCCATGGACTTGTACTTC 58.630 55.000 18.40 0.00 42.00 3.01
1353 3205 3.307762 GCCATGGACTTGTACTTCTCCTT 60.308 47.826 18.40 0.00 0.00 3.36
1382 3234 2.282887 AAAAACAGGGCCGCCGAT 60.283 55.556 2.55 0.00 0.00 4.18
1450 3302 1.045911 CCTCCCACCAGAGCTAGACC 61.046 65.000 0.00 0.00 32.17 3.85
1453 3305 2.055042 CCACCAGAGCTAGACCGCT 61.055 63.158 0.00 0.00 44.33 5.52
1458 3310 1.323412 CAGAGCTAGACCGCTACCAT 58.677 55.000 0.00 0.00 41.08 3.55
1644 3529 1.480137 CAAAAGTTTGAGGCCACACCA 59.520 47.619 5.01 0.00 43.14 4.17
1664 3549 5.641209 CACCAGAAGAATCCAGTACTTTGAG 59.359 44.000 0.00 0.00 0.00 3.02
1692 3577 7.049754 GGAATTCCATTTGCTGGTTAAATCAT 58.950 34.615 20.04 0.00 46.08 2.45
1693 3578 7.011669 GGAATTCCATTTGCTGGTTAAATCATG 59.988 37.037 20.04 0.00 46.08 3.07
1694 3579 5.999205 TCCATTTGCTGGTTAAATCATGT 57.001 34.783 0.00 0.00 46.08 3.21
1709 6570 1.423161 TCATGTGGTGGGTCATGACAA 59.577 47.619 26.47 11.97 43.29 3.18
1710 6571 2.041485 TCATGTGGTGGGTCATGACAAT 59.959 45.455 26.47 6.07 43.29 2.71
1711 6572 3.265479 TCATGTGGTGGGTCATGACAATA 59.735 43.478 26.47 9.73 43.29 1.90
1735 6596 3.043586 CGTCGGTATGTCATACTTGAGC 58.956 50.000 19.90 12.28 36.04 4.26
1737 6598 4.045104 GTCGGTATGTCATACTTGAGCTG 58.955 47.826 19.90 1.54 36.04 4.24
1752 6613 1.696336 GAGCTGGATCTGGATAGGCAA 59.304 52.381 0.00 0.00 0.00 4.52
1799 6672 3.248602 CCACAAATAGAAGCCGACTATGC 59.751 47.826 0.00 0.00 31.96 3.14
1801 6674 3.134804 ACAAATAGAAGCCGACTATGCCT 59.865 43.478 0.00 0.00 31.96 4.75
1850 6726 1.675641 GTGGGCTTGGCTTCATCGT 60.676 57.895 0.00 0.00 0.00 3.73
1858 6734 2.662006 TGGCTTCATCGTTCTCTCAG 57.338 50.000 0.00 0.00 0.00 3.35
1859 6735 1.205655 TGGCTTCATCGTTCTCTCAGG 59.794 52.381 0.00 0.00 0.00 3.86
1860 6736 1.472376 GGCTTCATCGTTCTCTCAGGG 60.472 57.143 0.00 0.00 0.00 4.45
1861 6737 1.205893 GCTTCATCGTTCTCTCAGGGT 59.794 52.381 0.00 0.00 0.00 4.34
1862 6738 2.354203 GCTTCATCGTTCTCTCAGGGTT 60.354 50.000 0.00 0.00 0.00 4.11
1863 6739 3.257393 CTTCATCGTTCTCTCAGGGTTG 58.743 50.000 0.00 0.00 0.00 3.77
1866 6742 0.318441 TCGTTCTCTCAGGGTTGCAG 59.682 55.000 0.00 0.00 0.00 4.41
1869 6748 1.876156 GTTCTCTCAGGGTTGCAGTTG 59.124 52.381 0.00 0.00 0.00 3.16
1933 6818 1.204704 CTGTATGGGTGCTCGACAGAA 59.795 52.381 0.00 0.00 39.94 3.02
1949 6834 5.874810 TCGACAGAACTATTGAATTCAAGGG 59.125 40.000 24.17 19.90 39.47 3.95
1954 6839 3.903467 ACTATTGAATTCAAGGGGCTCC 58.097 45.455 24.17 0.00 39.47 4.70
1955 6840 2.165357 ATTGAATTCAAGGGGCTCCC 57.835 50.000 24.17 0.00 45.90 4.30
2026 6914 7.890655 AGGAGAGTAATGCAATCCTTTTAAAGT 59.109 33.333 3.91 0.00 37.05 2.66
2032 6920 9.569167 GTAATGCAATCCTTTTAAAGTTAGGTC 57.431 33.333 3.91 0.00 0.00 3.85
2033 6921 8.422577 AATGCAATCCTTTTAAAGTTAGGTCT 57.577 30.769 3.91 0.00 0.00 3.85
2035 6923 8.245195 TGCAATCCTTTTAAAGTTAGGTCTTT 57.755 30.769 3.91 0.00 40.22 2.52
2130 7018 9.309516 CATTATCCATTTGAATATTGCTATGCC 57.690 33.333 0.00 0.00 0.00 4.40
2204 9790 5.207768 GTGAAACTTGTGTCATTGCTACTG 58.792 41.667 0.00 0.00 0.00 2.74
2206 9792 2.154462 ACTTGTGTCATTGCTACTGGC 58.846 47.619 0.00 0.00 42.22 4.85
2221 9807 3.243359 ACTGGCTTTCCTTGGAATTGA 57.757 42.857 2.65 0.00 0.00 2.57
2222 9808 3.575805 ACTGGCTTTCCTTGGAATTGAA 58.424 40.909 2.65 0.00 0.00 2.69
2223 9809 4.162651 ACTGGCTTTCCTTGGAATTGAAT 58.837 39.130 2.65 0.00 0.00 2.57
2224 9810 4.594491 ACTGGCTTTCCTTGGAATTGAATT 59.406 37.500 2.65 0.00 0.00 2.17
2225 9811 5.779771 ACTGGCTTTCCTTGGAATTGAATTA 59.220 36.000 2.65 0.00 0.00 1.40
2226 9812 6.036577 TGGCTTTCCTTGGAATTGAATTAC 57.963 37.500 2.65 0.00 0.00 1.89
2227 9813 5.779771 TGGCTTTCCTTGGAATTGAATTACT 59.220 36.000 1.33 0.00 0.00 2.24
2228 9814 6.269769 TGGCTTTCCTTGGAATTGAATTACTT 59.730 34.615 1.33 0.00 0.00 2.24
2229 9815 7.161404 GGCTTTCCTTGGAATTGAATTACTTT 58.839 34.615 1.33 0.00 0.00 2.66
2231 9817 7.062255 GCTTTCCTTGGAATTGAATTACTTTCG 59.938 37.037 1.33 0.00 37.13 3.46
2233 9819 7.753309 TCCTTGGAATTGAATTACTTTCGAA 57.247 32.000 1.33 0.00 37.13 3.71
2235 9821 8.634444 TCCTTGGAATTGAATTACTTTCGAAAA 58.366 29.630 12.41 0.00 37.13 2.29
2236 9822 9.255304 CCTTGGAATTGAATTACTTTCGAAAAA 57.745 29.630 12.41 4.74 37.13 1.94
2238 9824 8.276060 TGGAATTGAATTACTTTCGAAAAACG 57.724 30.769 12.41 3.05 44.09 3.60
2239 9825 7.916450 TGGAATTGAATTACTTTCGAAAAACGT 59.084 29.630 12.41 9.09 43.13 3.99
2240 9826 8.748582 GGAATTGAATTACTTTCGAAAAACGTT 58.251 29.630 12.41 0.00 43.13 3.99
2260 9846 9.760077 AAACGTTATTATGTTATAGGACAGAGG 57.240 33.333 0.00 0.00 33.20 3.69
2261 9847 7.893658 ACGTTATTATGTTATAGGACAGAGGG 58.106 38.462 0.00 0.00 32.19 4.30
2262 9848 7.727186 ACGTTATTATGTTATAGGACAGAGGGA 59.273 37.037 0.00 0.00 32.19 4.20
2263 9849 8.244802 CGTTATTATGTTATAGGACAGAGGGAG 58.755 40.741 0.00 0.00 32.19 4.30
2264 9850 9.091220 GTTATTATGTTATAGGACAGAGGGAGT 57.909 37.037 0.00 0.00 32.19 3.85
2266 9852 8.887264 ATTATGTTATAGGACAGAGGGAGTAG 57.113 38.462 0.00 0.00 32.19 2.57
2267 9853 5.728937 TGTTATAGGACAGAGGGAGTAGT 57.271 43.478 0.00 0.00 0.00 2.73
2268 9854 6.088541 TGTTATAGGACAGAGGGAGTAGTT 57.911 41.667 0.00 0.00 0.00 2.24
2269 9855 7.217028 TGTTATAGGACAGAGGGAGTAGTTA 57.783 40.000 0.00 0.00 0.00 2.24
2270 9856 7.823635 TGTTATAGGACAGAGGGAGTAGTTAT 58.176 38.462 0.00 0.00 0.00 1.89
2271 9857 8.287350 TGTTATAGGACAGAGGGAGTAGTTATT 58.713 37.037 0.00 0.00 0.00 1.40
2272 9858 9.145442 GTTATAGGACAGAGGGAGTAGTTATTT 57.855 37.037 0.00 0.00 0.00 1.40
2275 9861 7.604657 AGGACAGAGGGAGTAGTTATTTATG 57.395 40.000 0.00 0.00 0.00 1.90
2276 9862 7.363031 AGGACAGAGGGAGTAGTTATTTATGA 58.637 38.462 0.00 0.00 0.00 2.15
2277 9863 7.844779 AGGACAGAGGGAGTAGTTATTTATGAA 59.155 37.037 0.00 0.00 0.00 2.57
2278 9864 8.483758 GGACAGAGGGAGTAGTTATTTATGAAA 58.516 37.037 0.00 0.00 0.00 2.69
2279 9865 9.886132 GACAGAGGGAGTAGTTATTTATGAAAA 57.114 33.333 0.00 0.00 0.00 2.29
2282 9868 9.343539 AGAGGGAGTAGTTATTTATGAAAATGC 57.656 33.333 0.00 0.00 36.02 3.56
2283 9869 8.465273 AGGGAGTAGTTATTTATGAAAATGCC 57.535 34.615 0.00 0.00 36.02 4.40
2284 9870 8.058847 AGGGAGTAGTTATTTATGAAAATGCCA 58.941 33.333 0.00 0.00 36.02 4.92
2285 9871 8.135529 GGGAGTAGTTATTTATGAAAATGCCAC 58.864 37.037 0.00 0.00 36.02 5.01
2286 9872 8.903820 GGAGTAGTTATTTATGAAAATGCCACT 58.096 33.333 0.00 0.00 36.02 4.00
2320 9906 8.528917 TTTTTCATCTTCTCATGCAAAATGAG 57.471 30.769 9.15 9.15 45.08 2.90
2321 9907 6.829229 TTCATCTTCTCATGCAAAATGAGT 57.171 33.333 13.97 0.00 44.30 3.41
2322 9908 6.190954 TCATCTTCTCATGCAAAATGAGTG 57.809 37.500 13.97 6.71 44.30 3.51
2323 9909 5.941647 TCATCTTCTCATGCAAAATGAGTGA 59.058 36.000 13.97 13.26 44.30 3.41
2324 9910 5.618056 TCTTCTCATGCAAAATGAGTGAC 57.382 39.130 13.97 0.00 44.30 3.67
2325 9911 5.311265 TCTTCTCATGCAAAATGAGTGACT 58.689 37.500 13.97 0.00 44.30 3.41
2326 9912 5.180680 TCTTCTCATGCAAAATGAGTGACTG 59.819 40.000 13.97 3.93 44.30 3.51
2327 9913 3.754850 TCTCATGCAAAATGAGTGACTGG 59.245 43.478 13.97 0.00 44.30 4.00
2328 9914 3.489355 TCATGCAAAATGAGTGACTGGT 58.511 40.909 0.00 0.00 0.00 4.00
2329 9915 3.253921 TCATGCAAAATGAGTGACTGGTG 59.746 43.478 0.00 0.00 0.00 4.17
2330 9916 1.955778 TGCAAAATGAGTGACTGGTGG 59.044 47.619 0.00 0.00 0.00 4.61
2331 9917 1.270550 GCAAAATGAGTGACTGGTGGG 59.729 52.381 0.00 0.00 0.00 4.61
2332 9918 1.888512 CAAAATGAGTGACTGGTGGGG 59.111 52.381 0.00 0.00 0.00 4.96
2333 9919 0.251341 AAATGAGTGACTGGTGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
2334 9920 1.136329 AATGAGTGACTGGTGGGGCT 61.136 55.000 0.00 0.00 0.00 5.19
2335 9921 0.252696 ATGAGTGACTGGTGGGGCTA 60.253 55.000 0.00 0.00 0.00 3.93
2336 9922 0.904865 TGAGTGACTGGTGGGGCTAG 60.905 60.000 0.00 0.00 0.00 3.42
2337 9923 2.245438 GAGTGACTGGTGGGGCTAGC 62.245 65.000 6.04 6.04 0.00 3.42
2338 9924 2.203922 TGACTGGTGGGGCTAGCA 60.204 61.111 18.24 0.00 0.00 3.49
2339 9925 1.845664 TGACTGGTGGGGCTAGCAA 60.846 57.895 18.24 0.00 0.00 3.91
2340 9926 1.378762 GACTGGTGGGGCTAGCAAA 59.621 57.895 18.24 0.00 0.00 3.68
2341 9927 0.251165 GACTGGTGGGGCTAGCAAAA 60.251 55.000 18.24 0.00 0.00 2.44
2342 9928 0.409484 ACTGGTGGGGCTAGCAAAAT 59.591 50.000 18.24 0.00 0.00 1.82
2343 9929 0.819582 CTGGTGGGGCTAGCAAAATG 59.180 55.000 18.24 0.00 0.00 2.32
2344 9930 0.614415 TGGTGGGGCTAGCAAAATGG 60.614 55.000 18.24 0.00 0.00 3.16
2345 9931 0.324275 GGTGGGGCTAGCAAAATGGA 60.324 55.000 18.24 0.00 0.00 3.41
2346 9932 0.817654 GTGGGGCTAGCAAAATGGAC 59.182 55.000 18.24 0.00 0.00 4.02
2347 9933 0.324275 TGGGGCTAGCAAAATGGACC 60.324 55.000 18.24 5.41 0.00 4.46
2348 9934 0.324275 GGGGCTAGCAAAATGGACCA 60.324 55.000 18.24 0.00 27.96 4.02
2349 9935 1.689258 GGGGCTAGCAAAATGGACCAT 60.689 52.381 18.24 0.00 27.96 3.55
2350 9936 2.110578 GGGCTAGCAAAATGGACCATT 58.889 47.619 18.24 14.28 35.39 3.16
2351 9937 3.295973 GGGCTAGCAAAATGGACCATTA 58.704 45.455 20.11 3.36 32.43 1.90
2352 9938 3.704061 GGGCTAGCAAAATGGACCATTAA 59.296 43.478 20.11 3.55 32.43 1.40
2353 9939 4.202151 GGGCTAGCAAAATGGACCATTAAG 60.202 45.833 20.11 15.60 32.43 1.85
2354 9940 4.202151 GGCTAGCAAAATGGACCATTAAGG 60.202 45.833 20.11 12.99 45.67 2.69
2355 9941 4.202151 GCTAGCAAAATGGACCATTAAGGG 60.202 45.833 20.11 4.20 43.89 3.95
2356 9942 3.106827 AGCAAAATGGACCATTAAGGGG 58.893 45.455 20.11 9.11 43.89 4.79
2357 9943 2.837591 GCAAAATGGACCATTAAGGGGT 59.162 45.455 20.11 6.20 43.89 4.95
2358 9944 3.369366 GCAAAATGGACCATTAAGGGGTG 60.369 47.826 20.11 11.82 43.89 4.61
2359 9945 2.846665 AATGGACCATTAAGGGGTGG 57.153 50.000 18.45 0.85 43.89 4.61
2365 9951 3.732048 ACCATTAAGGGGTGGTTACTG 57.268 47.619 11.49 0.00 46.22 2.74
2366 9952 2.291346 ACCATTAAGGGGTGGTTACTGC 60.291 50.000 11.49 0.00 46.22 4.40
2367 9953 2.025321 CCATTAAGGGGTGGTTACTGCT 60.025 50.000 0.00 0.00 0.00 4.24
2368 9954 2.871096 TTAAGGGGTGGTTACTGCTG 57.129 50.000 0.00 0.00 0.00 4.41
2369 9955 2.032965 TAAGGGGTGGTTACTGCTGA 57.967 50.000 0.00 0.00 0.00 4.26
2370 9956 1.145571 AAGGGGTGGTTACTGCTGAA 58.854 50.000 0.00 0.00 0.00 3.02
2371 9957 1.145571 AGGGGTGGTTACTGCTGAAA 58.854 50.000 0.00 0.00 0.00 2.69
2372 9958 1.497286 AGGGGTGGTTACTGCTGAAAA 59.503 47.619 0.00 0.00 0.00 2.29
2373 9959 1.886542 GGGGTGGTTACTGCTGAAAAG 59.113 52.381 0.00 0.00 0.00 2.27
2374 9960 2.583143 GGGTGGTTACTGCTGAAAAGT 58.417 47.619 0.00 0.00 0.00 2.66
2375 9961 3.497227 GGGGTGGTTACTGCTGAAAAGTA 60.497 47.826 0.00 0.00 0.00 2.24
2376 9962 4.139038 GGGTGGTTACTGCTGAAAAGTAA 58.861 43.478 0.00 0.00 37.69 2.24
2377 9963 4.765339 GGGTGGTTACTGCTGAAAAGTAAT 59.235 41.667 0.00 0.00 41.03 1.89
2378 9964 5.243060 GGGTGGTTACTGCTGAAAAGTAATT 59.757 40.000 0.00 0.00 41.03 1.40
2379 9965 6.149633 GGTGGTTACTGCTGAAAAGTAATTG 58.850 40.000 0.00 0.00 41.03 2.32
2380 9966 6.016610 GGTGGTTACTGCTGAAAAGTAATTGA 60.017 38.462 0.00 0.00 41.03 2.57
2381 9967 6.856426 GTGGTTACTGCTGAAAAGTAATTGAC 59.144 38.462 0.00 0.00 41.03 3.18
2382 9968 6.077838 GGTTACTGCTGAAAAGTAATTGACG 58.922 40.000 0.00 0.00 41.03 4.35
2383 9969 6.073440 GGTTACTGCTGAAAAGTAATTGACGA 60.073 38.462 0.00 0.00 41.03 4.20
2384 9970 5.344207 ACTGCTGAAAAGTAATTGACGAC 57.656 39.130 0.00 0.00 0.00 4.34
2385 9971 4.814234 ACTGCTGAAAAGTAATTGACGACA 59.186 37.500 0.00 0.00 0.00 4.35
2395 9981 5.460646 AGTAATTGACGACAATGGCAAAAG 58.539 37.500 13.68 0.00 44.67 2.27
2407 9993 7.687757 CGACAATGGCAAAAGCATAAATAAAAC 59.312 33.333 0.00 0.00 0.00 2.43
2479 10069 6.216456 AGAAATTCAAGGAAGACTAGTGGGAT 59.784 38.462 0.00 0.00 0.00 3.85
2497 10087 4.955450 TGGGATTGACATACATTTTCCCTG 59.045 41.667 6.64 0.00 40.33 4.45
2499 10089 6.126409 GGGATTGACATACATTTTCCCTGTA 58.874 40.000 0.00 0.00 38.46 2.74
2501 10091 7.123547 GGGATTGACATACATTTTCCCTGTAAA 59.876 37.037 0.00 0.00 38.46 2.01
2639 11970 5.906772 AAAAAGTACTCCCTCTGGAAAGA 57.093 39.130 0.00 0.00 41.17 2.52
2640 11971 5.906772 AAAAGTACTCCCTCTGGAAAGAA 57.093 39.130 0.00 0.00 41.17 2.52
2641 11972 5.906772 AAAGTACTCCCTCTGGAAAGAAA 57.093 39.130 0.00 0.00 41.17 2.52
2643 11974 7.569599 AAAGTACTCCCTCTGGAAAGAAATA 57.430 36.000 0.00 0.00 41.17 1.40
2645 11976 8.855804 AAGTACTCCCTCTGGAAAGAAATATA 57.144 34.615 0.00 0.00 41.17 0.86
2646 11977 8.855804 AGTACTCCCTCTGGAAAGAAATATAA 57.144 34.615 0.00 0.00 41.17 0.98
2648 11979 7.996758 ACTCCCTCTGGAAAGAAATATAAGA 57.003 36.000 0.00 0.00 41.17 2.10
2649 11980 8.028652 ACTCCCTCTGGAAAGAAATATAAGAG 57.971 38.462 0.00 0.00 41.17 2.85
2650 11981 6.831976 TCCCTCTGGAAAGAAATATAAGAGC 58.168 40.000 0.00 0.00 37.86 4.09
2653 11984 6.763610 CCTCTGGAAAGAAATATAAGAGCGTT 59.236 38.462 0.00 0.00 0.00 4.84
2654 11985 7.281100 CCTCTGGAAAGAAATATAAGAGCGTTT 59.719 37.037 0.00 0.00 0.00 3.60
2655 11986 9.314321 CTCTGGAAAGAAATATAAGAGCGTTTA 57.686 33.333 0.00 0.00 0.00 2.01
2656 11987 9.314321 TCTGGAAAGAAATATAAGAGCGTTTAG 57.686 33.333 0.00 0.00 0.00 1.85
2657 11988 9.314321 CTGGAAAGAAATATAAGAGCGTTTAGA 57.686 33.333 0.00 0.00 0.00 2.10
2658 11989 9.832445 TGGAAAGAAATATAAGAGCGTTTAGAT 57.168 29.630 0.00 0.00 0.00 1.98
2669 12000 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2670 12001 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2685 12016 6.824704 ACTAAAGTAGTGATCTAGACGCTCTT 59.175 38.462 10.41 10.62 37.69 2.85
2698 12029 8.917415 TCTAGACGCTCTTATATGCATAAATG 57.083 34.615 11.13 3.87 0.00 2.32
2703 12034 6.073058 ACGCTCTTATATGCATAAATGGTGTG 60.073 38.462 11.13 10.67 0.00 3.82
2713 12044 6.385843 TGCATAAATGGTGTGTCAAATGTAC 58.614 36.000 0.00 0.00 0.00 2.90
2723 12054 6.426937 GGTGTGTCAAATGTACTCTTATGTGT 59.573 38.462 0.00 0.00 0.00 3.72
2787 12123 6.307155 CAGTTGGAAATCGACACAATAGTTC 58.693 40.000 0.00 0.00 32.09 3.01
2794 12131 7.307751 GGAAATCGACACAATAGTTCTTGTCAA 60.308 37.037 0.00 0.00 38.64 3.18
2813 12151 3.073798 TCAATTGTGGAGAGCCCTGTTAA 59.926 43.478 5.13 0.00 35.38 2.01
2844 12182 4.338879 AGTTTAGATGCACAGCTGGAAAT 58.661 39.130 19.93 7.84 0.00 2.17
2875 12217 3.493503 GCCGAACCTATTATGTTTCTCGG 59.506 47.826 2.90 2.90 35.14 4.63
2876 12218 4.690122 CCGAACCTATTATGTTTCTCGGT 58.310 43.478 0.00 0.00 30.41 4.69
2885 12227 7.915397 CCTATTATGTTTCTCGGTGGATTTTTG 59.085 37.037 0.00 0.00 0.00 2.44
2892 12234 3.954904 TCTCGGTGGATTTTTGGTTTTCA 59.045 39.130 0.00 0.00 0.00 2.69
3033 12376 2.210116 TGTCTGCCGTTCTCTTGAAAC 58.790 47.619 0.00 0.00 33.52 2.78
3034 12377 1.192534 GTCTGCCGTTCTCTTGAAACG 59.807 52.381 1.64 1.64 33.52 3.60
3035 12378 1.202486 TCTGCCGTTCTCTTGAAACGT 60.202 47.619 7.51 0.00 33.52 3.99
3036 12379 0.934496 TGCCGTTCTCTTGAAACGTG 59.066 50.000 7.51 1.38 33.52 4.49
3037 12380 0.935196 GCCGTTCTCTTGAAACGTGT 59.065 50.000 7.51 0.00 33.52 4.49
3038 12381 1.332904 GCCGTTCTCTTGAAACGTGTG 60.333 52.381 7.51 0.00 33.52 3.82
3039 12382 2.198406 CCGTTCTCTTGAAACGTGTGA 58.802 47.619 7.51 0.00 33.52 3.58
3040 12383 2.034001 CCGTTCTCTTGAAACGTGTGAC 60.034 50.000 7.51 0.00 33.52 3.67
3102 12446 5.277857 GCTGAGACCTAGCTAACCAAATA 57.722 43.478 0.00 0.00 38.14 1.40
3109 12453 7.506971 AGACCTAGCTAACCAAATATGTAACC 58.493 38.462 0.00 0.00 0.00 2.85
3166 12510 6.739112 ACACTCTTTTATTTGGAAGCTGAAC 58.261 36.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.613255 GGACACAATGGGTCCGAACAT 60.613 52.381 19.91 0.00 44.80 2.71
94 95 3.880490 ACTGATCGACCAGACTCAGATAC 59.120 47.826 15.47 0.00 37.64 2.24
95 96 4.157849 ACTGATCGACCAGACTCAGATA 57.842 45.455 15.47 0.00 37.64 1.98
156 157 8.124823 AGCATCTCACACATAATGAAAATTACG 58.875 33.333 0.00 0.00 0.00 3.18
198 199 5.614324 TGATCCGGATAGATTGTCAAAGT 57.386 39.130 19.15 0.00 0.00 2.66
214 215 8.751335 CCCATTTATTTTTACGAAAATGATCCG 58.249 33.333 7.92 0.00 43.44 4.18
232 233 3.203934 AGGAAGCAGAAGAGCCCATTTAT 59.796 43.478 0.00 0.00 34.23 1.40
352 353 5.108780 CGTAAAGAAAAACACAACGCTCATG 60.109 40.000 0.00 0.00 0.00 3.07
353 354 4.967575 CGTAAAGAAAAACACAACGCTCAT 59.032 37.500 0.00 0.00 0.00 2.90
576 592 2.153039 TGCAACTCGAACTGCATCG 58.847 52.632 15.18 3.28 43.44 3.84
774 2582 2.092968 CGAGGGAATTTCAGACCCATCA 60.093 50.000 0.00 0.00 45.43 3.07
925 2737 3.719871 AGGGTTTGGTCACTTCCTTTTT 58.280 40.909 0.00 0.00 0.00 1.94
926 2738 3.398318 AGGGTTTGGTCACTTCCTTTT 57.602 42.857 0.00 0.00 0.00 2.27
927 2739 3.398318 AAGGGTTTGGTCACTTCCTTT 57.602 42.857 0.00 0.00 31.30 3.11
928 2740 3.720002 TCTAAGGGTTTGGTCACTTCCTT 59.280 43.478 0.00 0.00 38.12 3.36
929 2741 3.323775 TCTAAGGGTTTGGTCACTTCCT 58.676 45.455 0.00 0.00 32.90 3.36
930 2742 3.326880 TCTCTAAGGGTTTGGTCACTTCC 59.673 47.826 0.00 0.00 32.90 3.46
931 2743 4.283722 TCTCTCTAAGGGTTTGGTCACTTC 59.716 45.833 0.00 0.00 32.90 3.01
932 2744 4.232091 TCTCTCTAAGGGTTTGGTCACTT 58.768 43.478 0.00 0.00 35.15 3.16
933 2745 3.858135 TCTCTCTAAGGGTTTGGTCACT 58.142 45.455 0.00 0.00 0.00 3.41
934 2746 4.570930 CTTCTCTCTAAGGGTTTGGTCAC 58.429 47.826 0.00 0.00 0.00 3.67
935 2747 3.008049 GCTTCTCTCTAAGGGTTTGGTCA 59.992 47.826 0.00 0.00 0.00 4.02
936 2748 3.262151 AGCTTCTCTCTAAGGGTTTGGTC 59.738 47.826 0.00 0.00 0.00 4.02
937 2749 3.008485 CAGCTTCTCTCTAAGGGTTTGGT 59.992 47.826 0.00 0.00 0.00 3.67
938 2750 3.261897 TCAGCTTCTCTCTAAGGGTTTGG 59.738 47.826 0.00 0.00 0.00 3.28
939 2751 4.502962 CTCAGCTTCTCTCTAAGGGTTTG 58.497 47.826 0.00 0.00 0.00 2.93
940 2752 3.055458 GCTCAGCTTCTCTCTAAGGGTTT 60.055 47.826 0.00 0.00 0.00 3.27
941 2753 2.499693 GCTCAGCTTCTCTCTAAGGGTT 59.500 50.000 0.00 0.00 0.00 4.11
942 2754 2.107366 GCTCAGCTTCTCTCTAAGGGT 58.893 52.381 0.00 0.00 0.00 4.34
943 2755 1.412343 GGCTCAGCTTCTCTCTAAGGG 59.588 57.143 0.00 0.00 0.00 3.95
944 2756 1.412343 GGGCTCAGCTTCTCTCTAAGG 59.588 57.143 0.00 0.00 0.00 2.69
945 2757 1.066908 CGGGCTCAGCTTCTCTCTAAG 59.933 57.143 0.00 0.00 0.00 2.18
946 2758 1.107114 CGGGCTCAGCTTCTCTCTAA 58.893 55.000 0.00 0.00 0.00 2.10
947 2759 0.753479 CCGGGCTCAGCTTCTCTCTA 60.753 60.000 0.00 0.00 0.00 2.43
948 2760 2.057408 CCGGGCTCAGCTTCTCTCT 61.057 63.158 0.00 0.00 0.00 3.10
949 2761 2.015227 CTCCGGGCTCAGCTTCTCTC 62.015 65.000 0.00 0.00 0.00 3.20
950 2762 2.038007 TCCGGGCTCAGCTTCTCT 59.962 61.111 0.00 0.00 0.00 3.10
951 2763 2.015227 CTCTCCGGGCTCAGCTTCTC 62.015 65.000 0.00 0.00 0.00 2.87
952 2764 2.038007 TCTCCGGGCTCAGCTTCT 59.962 61.111 0.00 0.00 0.00 2.85
953 2765 1.608717 TTCTCTCCGGGCTCAGCTTC 61.609 60.000 0.00 0.00 0.00 3.86
954 2766 1.610673 TTCTCTCCGGGCTCAGCTT 60.611 57.895 0.00 0.00 0.00 3.74
955 2767 2.038007 TTCTCTCCGGGCTCAGCT 59.962 61.111 0.00 0.00 0.00 4.24
956 2768 1.398958 ATCTTCTCTCCGGGCTCAGC 61.399 60.000 0.00 0.00 0.00 4.26
957 2769 0.388659 CATCTTCTCTCCGGGCTCAG 59.611 60.000 0.00 0.00 0.00 3.35
958 2770 1.680522 GCATCTTCTCTCCGGGCTCA 61.681 60.000 0.00 0.00 0.00 4.26
959 2771 1.068921 GCATCTTCTCTCCGGGCTC 59.931 63.158 0.00 0.00 0.00 4.70
965 2777 1.140452 TCATGGCTGCATCTTCTCTCC 59.860 52.381 0.50 0.00 0.00 3.71
974 2786 3.515286 GCGTGCTCATGGCTGCAT 61.515 61.111 0.50 0.00 41.45 3.96
1068 2908 1.115467 GAAGGCGGAGGAGAATCTCA 58.885 55.000 12.79 0.00 35.58 3.27
1116 2956 0.254178 AATGCTTGCAGACGAGGGAT 59.746 50.000 0.87 0.00 0.00 3.85
1203 3049 0.110644 CGTTGACGAAGAAGCCAAGC 60.111 55.000 0.00 0.00 43.02 4.01
1248 3094 1.688735 TCTGGTCGATCTAGCATTGGG 59.311 52.381 0.00 0.00 0.00 4.12
1381 3233 0.916086 TCCCACACAAATAGGCGGAT 59.084 50.000 0.00 0.00 0.00 4.18
1382 3234 0.035820 GTCCCACACAAATAGGCGGA 60.036 55.000 0.00 0.00 0.00 5.54
1426 3278 0.980231 AGCTCTGGTGGGAGGATCAC 60.980 60.000 0.00 0.00 40.71 3.06
1450 3302 5.332581 CGTTGAAGATGAACATATGGTAGCG 60.333 44.000 7.80 0.00 0.00 4.26
1453 3305 5.364778 CCCGTTGAAGATGAACATATGGTA 58.635 41.667 7.80 0.00 0.00 3.25
1458 3310 2.639065 GCCCCGTTGAAGATGAACATA 58.361 47.619 0.00 0.00 0.00 2.29
1628 3507 0.550914 TTCTGGTGTGGCCTCAAACT 59.449 50.000 9.53 0.00 38.35 2.66
1644 3529 5.280215 CCCACTCAAAGTACTGGATTCTTCT 60.280 44.000 0.00 0.00 0.00 2.85
1692 3577 2.642311 ACTATTGTCATGACCCACCACA 59.358 45.455 22.85 0.00 0.00 4.17
1693 3578 3.270877 GACTATTGTCATGACCCACCAC 58.729 50.000 22.85 7.29 42.48 4.16
1694 3579 2.093711 CGACTATTGTCATGACCCACCA 60.094 50.000 22.85 0.74 43.06 4.17
1709 6570 5.761726 TCAAGTATGACATACCGACGACTAT 59.238 40.000 19.76 0.00 36.40 2.12
1710 6571 5.118286 TCAAGTATGACATACCGACGACTA 58.882 41.667 19.76 0.00 36.40 2.59
1711 6572 3.943381 TCAAGTATGACATACCGACGACT 59.057 43.478 19.76 0.81 36.40 4.18
1735 6596 2.502295 GCTTTGCCTATCCAGATCCAG 58.498 52.381 0.00 0.00 0.00 3.86
1737 6598 1.902938 GGCTTTGCCTATCCAGATCC 58.097 55.000 0.73 0.00 46.69 3.36
1752 6613 0.248843 GCTCTGTCACAGCTAGGCTT 59.751 55.000 0.00 0.00 36.40 4.35
1799 6672 4.755123 CGGGCATAATCCTTAACTTGTAGG 59.245 45.833 0.00 0.00 0.00 3.18
1801 6674 4.131596 GCGGGCATAATCCTTAACTTGTA 58.868 43.478 0.00 0.00 0.00 2.41
1850 6726 1.815408 GCAACTGCAACCCTGAGAGAA 60.815 52.381 0.00 0.00 41.59 2.87
1863 6739 0.173255 ATAATTGGGCGTGCAACTGC 59.827 50.000 0.00 0.00 42.50 4.40
1866 6742 0.814457 TCCATAATTGGGCGTGCAAC 59.186 50.000 0.00 0.00 43.81 4.17
1869 6748 1.334869 CTCTTCCATAATTGGGCGTGC 59.665 52.381 0.00 0.00 43.81 5.34
1933 6818 3.373110 GGGAGCCCCTTGAATTCAATAGT 60.373 47.826 20.76 5.06 41.34 2.12
1954 6839 2.706190 AGTATCCCTCCCGATTTGAAGG 59.294 50.000 0.00 0.00 0.00 3.46
1955 6840 4.262506 GGTAGTATCCCTCCCGATTTGAAG 60.263 50.000 0.00 0.00 0.00 3.02
2026 6914 6.601332 AGACCATGAAGAAACAAAGACCTAA 58.399 36.000 0.00 0.00 0.00 2.69
2032 6920 6.881065 TGGAGATAGACCATGAAGAAACAAAG 59.119 38.462 0.00 0.00 32.03 2.77
2033 6921 6.778821 TGGAGATAGACCATGAAGAAACAAA 58.221 36.000 0.00 0.00 32.03 2.83
2035 6923 5.485353 ACTGGAGATAGACCATGAAGAAACA 59.515 40.000 0.00 0.00 36.79 2.83
2070 6958 8.932945 AGAAGTTCATTTTGGAAAGTTTCTTC 57.067 30.769 15.05 7.08 0.00 2.87
2097 6985 3.576078 TCAAATGGATAATGGCGACCT 57.424 42.857 0.00 0.00 0.00 3.85
2098 6986 4.853924 ATTCAAATGGATAATGGCGACC 57.146 40.909 0.00 0.00 0.00 4.79
2130 7018 1.668419 AAGGCTTGCTATTACCTGCG 58.332 50.000 0.00 0.00 31.32 5.18
2182 9768 4.275689 CCAGTAGCAATGACACAAGTTTCA 59.724 41.667 0.00 0.00 0.00 2.69
2187 9773 2.907910 GCCAGTAGCAATGACACAAG 57.092 50.000 0.00 0.00 42.97 3.16
2204 9790 6.286240 AGTAATTCAATTCCAAGGAAAGCC 57.714 37.500 5.52 0.00 37.69 4.35
2206 9792 8.296713 TCGAAAGTAATTCAATTCCAAGGAAAG 58.703 33.333 5.52 2.26 37.96 2.62
2235 9821 8.365647 CCCTCTGTCCTATAACATAATAACGTT 58.634 37.037 5.88 5.88 0.00 3.99
2236 9822 7.727186 TCCCTCTGTCCTATAACATAATAACGT 59.273 37.037 0.00 0.00 0.00 3.99
2237 9823 8.118976 TCCCTCTGTCCTATAACATAATAACG 57.881 38.462 0.00 0.00 0.00 3.18
2238 9824 9.091220 ACTCCCTCTGTCCTATAACATAATAAC 57.909 37.037 0.00 0.00 0.00 1.89
2240 9826 9.976776 CTACTCCCTCTGTCCTATAACATAATA 57.023 37.037 0.00 0.00 0.00 0.98
2241 9827 8.457757 ACTACTCCCTCTGTCCTATAACATAAT 58.542 37.037 0.00 0.00 0.00 1.28
2242 9828 7.823635 ACTACTCCCTCTGTCCTATAACATAA 58.176 38.462 0.00 0.00 0.00 1.90
2243 9829 7.403837 ACTACTCCCTCTGTCCTATAACATA 57.596 40.000 0.00 0.00 0.00 2.29
2244 9830 6.282568 ACTACTCCCTCTGTCCTATAACAT 57.717 41.667 0.00 0.00 0.00 2.71
2245 9831 5.728937 ACTACTCCCTCTGTCCTATAACA 57.271 43.478 0.00 0.00 0.00 2.41
2246 9832 8.709272 AATAACTACTCCCTCTGTCCTATAAC 57.291 38.462 0.00 0.00 0.00 1.89
2249 9835 9.315363 CATAAATAACTACTCCCTCTGTCCTAT 57.685 37.037 0.00 0.00 0.00 2.57
2250 9836 8.508601 TCATAAATAACTACTCCCTCTGTCCTA 58.491 37.037 0.00 0.00 0.00 2.94
2251 9837 7.363031 TCATAAATAACTACTCCCTCTGTCCT 58.637 38.462 0.00 0.00 0.00 3.85
2252 9838 7.598759 TCATAAATAACTACTCCCTCTGTCC 57.401 40.000 0.00 0.00 0.00 4.02
2253 9839 9.886132 TTTTCATAAATAACTACTCCCTCTGTC 57.114 33.333 0.00 0.00 0.00 3.51
2256 9842 9.343539 GCATTTTCATAAATAACTACTCCCTCT 57.656 33.333 0.00 0.00 32.75 3.69
2257 9843 8.568794 GGCATTTTCATAAATAACTACTCCCTC 58.431 37.037 0.00 0.00 32.75 4.30
2258 9844 8.058847 TGGCATTTTCATAAATAACTACTCCCT 58.941 33.333 0.00 0.00 32.75 4.20
2259 9845 8.135529 GTGGCATTTTCATAAATAACTACTCCC 58.864 37.037 0.00 0.00 32.75 4.30
2260 9846 8.903820 AGTGGCATTTTCATAAATAACTACTCC 58.096 33.333 0.00 0.00 31.22 3.85
2295 9881 8.145767 ACTCATTTTGCATGAGAAGATGAAAAA 58.854 29.630 20.01 0.00 46.25 1.94
2296 9882 7.597369 CACTCATTTTGCATGAGAAGATGAAAA 59.403 33.333 20.01 0.00 46.25 2.29
2297 9883 7.040271 TCACTCATTTTGCATGAGAAGATGAAA 60.040 33.333 20.01 0.00 46.25 2.69
2298 9884 6.431852 TCACTCATTTTGCATGAGAAGATGAA 59.568 34.615 20.01 0.00 46.25 2.57
2299 9885 5.941647 TCACTCATTTTGCATGAGAAGATGA 59.058 36.000 20.01 11.34 46.25 2.92
2300 9886 6.028368 GTCACTCATTTTGCATGAGAAGATG 58.972 40.000 20.01 9.49 46.25 2.90
2301 9887 5.944599 AGTCACTCATTTTGCATGAGAAGAT 59.055 36.000 20.01 3.52 46.25 2.40
2302 9888 5.180680 CAGTCACTCATTTTGCATGAGAAGA 59.819 40.000 20.01 14.30 46.25 2.87
2303 9889 5.391449 CAGTCACTCATTTTGCATGAGAAG 58.609 41.667 20.01 12.60 46.25 2.85
2304 9890 4.216902 CCAGTCACTCATTTTGCATGAGAA 59.783 41.667 20.01 7.06 46.25 2.87
2305 9891 3.754850 CCAGTCACTCATTTTGCATGAGA 59.245 43.478 20.01 0.00 46.25 3.27
2307 9893 3.253921 CACCAGTCACTCATTTTGCATGA 59.746 43.478 0.00 0.00 0.00 3.07
2308 9894 3.571571 CACCAGTCACTCATTTTGCATG 58.428 45.455 0.00 0.00 0.00 4.06
2309 9895 2.559668 CCACCAGTCACTCATTTTGCAT 59.440 45.455 0.00 0.00 0.00 3.96
2310 9896 1.955778 CCACCAGTCACTCATTTTGCA 59.044 47.619 0.00 0.00 0.00 4.08
2311 9897 1.270550 CCCACCAGTCACTCATTTTGC 59.729 52.381 0.00 0.00 0.00 3.68
2312 9898 1.888512 CCCCACCAGTCACTCATTTTG 59.111 52.381 0.00 0.00 0.00 2.44
2313 9899 1.823250 GCCCCACCAGTCACTCATTTT 60.823 52.381 0.00 0.00 0.00 1.82
2314 9900 0.251341 GCCCCACCAGTCACTCATTT 60.251 55.000 0.00 0.00 0.00 2.32
2315 9901 1.136329 AGCCCCACCAGTCACTCATT 61.136 55.000 0.00 0.00 0.00 2.57
2316 9902 0.252696 TAGCCCCACCAGTCACTCAT 60.253 55.000 0.00 0.00 0.00 2.90
2317 9903 0.904865 CTAGCCCCACCAGTCACTCA 60.905 60.000 0.00 0.00 0.00 3.41
2318 9904 1.901085 CTAGCCCCACCAGTCACTC 59.099 63.158 0.00 0.00 0.00 3.51
2319 9905 2.294078 GCTAGCCCCACCAGTCACT 61.294 63.158 2.29 0.00 0.00 3.41
2320 9906 2.124507 TTGCTAGCCCCACCAGTCAC 62.125 60.000 13.29 0.00 0.00 3.67
2321 9907 1.422977 TTTGCTAGCCCCACCAGTCA 61.423 55.000 13.29 0.00 0.00 3.41
2322 9908 0.251165 TTTTGCTAGCCCCACCAGTC 60.251 55.000 13.29 0.00 0.00 3.51
2323 9909 0.409484 ATTTTGCTAGCCCCACCAGT 59.591 50.000 13.29 0.00 0.00 4.00
2324 9910 0.819582 CATTTTGCTAGCCCCACCAG 59.180 55.000 13.29 0.00 0.00 4.00
2325 9911 0.614415 CCATTTTGCTAGCCCCACCA 60.614 55.000 13.29 0.00 0.00 4.17
2326 9912 0.324275 TCCATTTTGCTAGCCCCACC 60.324 55.000 13.29 0.00 0.00 4.61
2327 9913 0.817654 GTCCATTTTGCTAGCCCCAC 59.182 55.000 13.29 0.00 0.00 4.61
2328 9914 0.324275 GGTCCATTTTGCTAGCCCCA 60.324 55.000 13.29 0.00 0.00 4.96
2329 9915 0.324275 TGGTCCATTTTGCTAGCCCC 60.324 55.000 13.29 0.00 0.00 5.80
2330 9916 1.780503 ATGGTCCATTTTGCTAGCCC 58.219 50.000 13.29 3.73 0.00 5.19
2331 9917 4.202151 CCTTAATGGTCCATTTTGCTAGCC 60.202 45.833 22.13 0.00 35.54 3.93
2332 9918 4.202151 CCCTTAATGGTCCATTTTGCTAGC 60.202 45.833 22.13 8.10 35.54 3.42
2333 9919 4.342092 CCCCTTAATGGTCCATTTTGCTAG 59.658 45.833 22.13 11.42 35.54 3.42
2334 9920 4.264623 ACCCCTTAATGGTCCATTTTGCTA 60.265 41.667 22.13 0.98 35.54 3.49
2335 9921 3.106827 CCCCTTAATGGTCCATTTTGCT 58.893 45.455 22.13 0.03 35.54 3.91
2336 9922 2.837591 ACCCCTTAATGGTCCATTTTGC 59.162 45.455 22.13 0.00 35.54 3.68
2337 9923 3.197549 CCACCCCTTAATGGTCCATTTTG 59.802 47.826 22.13 14.28 35.54 2.44
2338 9924 3.181400 ACCACCCCTTAATGGTCCATTTT 60.181 43.478 22.13 2.51 46.62 1.82
2339 9925 2.385417 ACCACCCCTTAATGGTCCATTT 59.615 45.455 22.13 7.05 46.62 2.32
2340 9926 2.007636 ACCACCCCTTAATGGTCCATT 58.992 47.619 20.82 20.82 46.62 3.16
2341 9927 1.693799 ACCACCCCTTAATGGTCCAT 58.306 50.000 0.00 0.00 46.62 3.41
2342 9928 3.207213 ACCACCCCTTAATGGTCCA 57.793 52.632 0.00 0.00 46.62 4.02
2346 9932 2.025321 AGCAGTAACCACCCCTTAATGG 60.025 50.000 0.00 0.00 42.13 3.16
2347 9933 3.016736 CAGCAGTAACCACCCCTTAATG 58.983 50.000 0.00 0.00 0.00 1.90
2348 9934 2.916934 TCAGCAGTAACCACCCCTTAAT 59.083 45.455 0.00 0.00 0.00 1.40
2349 9935 2.340731 TCAGCAGTAACCACCCCTTAA 58.659 47.619 0.00 0.00 0.00 1.85
2350 9936 2.032965 TCAGCAGTAACCACCCCTTA 57.967 50.000 0.00 0.00 0.00 2.69
2351 9937 1.145571 TTCAGCAGTAACCACCCCTT 58.854 50.000 0.00 0.00 0.00 3.95
2352 9938 1.145571 TTTCAGCAGTAACCACCCCT 58.854 50.000 0.00 0.00 0.00 4.79
2353 9939 1.886542 CTTTTCAGCAGTAACCACCCC 59.113 52.381 0.00 0.00 0.00 4.95
2354 9940 2.583143 ACTTTTCAGCAGTAACCACCC 58.417 47.619 0.00 0.00 0.00 4.61
2355 9941 5.959618 ATTACTTTTCAGCAGTAACCACC 57.040 39.130 0.00 0.00 39.09 4.61
2356 9942 6.856426 GTCAATTACTTTTCAGCAGTAACCAC 59.144 38.462 0.00 0.00 39.09 4.16
2357 9943 6.293190 CGTCAATTACTTTTCAGCAGTAACCA 60.293 38.462 0.00 0.00 39.09 3.67
2358 9944 6.073440 TCGTCAATTACTTTTCAGCAGTAACC 60.073 38.462 0.00 0.00 39.09 2.85
2359 9945 6.790825 GTCGTCAATTACTTTTCAGCAGTAAC 59.209 38.462 0.00 0.00 39.09 2.50
2360 9946 6.480651 TGTCGTCAATTACTTTTCAGCAGTAA 59.519 34.615 0.00 0.00 40.26 2.24
2361 9947 5.986741 TGTCGTCAATTACTTTTCAGCAGTA 59.013 36.000 0.00 0.00 0.00 2.74
2362 9948 4.814234 TGTCGTCAATTACTTTTCAGCAGT 59.186 37.500 0.00 0.00 0.00 4.40
2363 9949 5.342806 TGTCGTCAATTACTTTTCAGCAG 57.657 39.130 0.00 0.00 0.00 4.24
2364 9950 5.743026 TTGTCGTCAATTACTTTTCAGCA 57.257 34.783 0.00 0.00 0.00 4.41
2365 9951 5.569059 CCATTGTCGTCAATTACTTTTCAGC 59.431 40.000 5.10 0.00 41.66 4.26
2366 9952 5.569059 GCCATTGTCGTCAATTACTTTTCAG 59.431 40.000 5.10 0.00 41.66 3.02
2367 9953 5.009110 TGCCATTGTCGTCAATTACTTTTCA 59.991 36.000 5.10 0.00 41.66 2.69
2368 9954 5.457140 TGCCATTGTCGTCAATTACTTTTC 58.543 37.500 5.10 0.00 41.66 2.29
2369 9955 5.446143 TGCCATTGTCGTCAATTACTTTT 57.554 34.783 5.10 0.00 41.66 2.27
2370 9956 5.446143 TTGCCATTGTCGTCAATTACTTT 57.554 34.783 5.10 0.00 41.66 2.66
2371 9957 5.446143 TTTGCCATTGTCGTCAATTACTT 57.554 34.783 5.10 0.00 41.66 2.24
2372 9958 5.446143 TTTTGCCATTGTCGTCAATTACT 57.554 34.783 5.10 0.00 41.66 2.24
2373 9959 4.089923 GCTTTTGCCATTGTCGTCAATTAC 59.910 41.667 5.10 1.93 39.11 1.89
2374 9960 4.233789 GCTTTTGCCATTGTCGTCAATTA 58.766 39.130 5.10 0.00 39.11 1.40
2375 9961 3.059166 GCTTTTGCCATTGTCGTCAATT 58.941 40.909 5.10 0.00 39.11 2.32
2376 9962 2.035704 TGCTTTTGCCATTGTCGTCAAT 59.964 40.909 1.85 1.85 46.87 2.57
2377 9963 1.406898 TGCTTTTGCCATTGTCGTCAA 59.593 42.857 0.00 0.00 46.87 3.18
2378 9964 1.028130 TGCTTTTGCCATTGTCGTCA 58.972 45.000 0.00 0.00 46.87 4.35
2379 9965 2.352503 ATGCTTTTGCCATTGTCGTC 57.647 45.000 0.00 0.00 46.87 4.20
2380 9966 3.932545 TTATGCTTTTGCCATTGTCGT 57.067 38.095 0.00 0.00 46.87 4.34
2381 9967 6.884096 TTATTTATGCTTTTGCCATTGTCG 57.116 33.333 0.00 0.00 46.87 4.35
2382 9968 7.687757 CGTTTTATTTATGCTTTTGCCATTGTC 59.312 33.333 0.00 0.00 46.87 3.18
2383 9969 7.360776 CCGTTTTATTTATGCTTTTGCCATTGT 60.361 33.333 0.00 0.00 46.87 2.71
2384 9970 6.960431 CCGTTTTATTTATGCTTTTGCCATTG 59.040 34.615 0.00 0.00 46.87 2.82
2385 9971 6.876257 TCCGTTTTATTTATGCTTTTGCCATT 59.124 30.769 0.00 0.00 46.87 3.16
2395 9981 5.068591 ACCCTTCCATCCGTTTTATTTATGC 59.931 40.000 0.00 0.00 0.00 3.14
2407 9993 2.124570 CTGCCACCCTTCCATCCG 60.125 66.667 0.00 0.00 0.00 4.18
2509 10099 7.315142 TGATAGGCATTTCAGCAACTAAAAAG 58.685 34.615 0.00 0.00 35.83 2.27
2627 11958 5.698545 CGCTCTTATATTTCTTTCCAGAGGG 59.301 44.000 0.00 0.00 34.68 4.30
2629 11960 7.778470 AACGCTCTTATATTTCTTTCCAGAG 57.222 36.000 0.00 0.00 0.00 3.35
2630 11961 9.314321 CTAAACGCTCTTATATTTCTTTCCAGA 57.686 33.333 0.00 0.00 0.00 3.86
2631 11962 9.314321 TCTAAACGCTCTTATATTTCTTTCCAG 57.686 33.333 0.00 0.00 0.00 3.86
2643 11974 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2645 11976 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2646 11977 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2660 11991 6.350906 AGAGCGTCTAGATCACTACTTTAGT 58.649 40.000 0.00 0.00 37.82 2.24
2661 11992 6.854496 AGAGCGTCTAGATCACTACTTTAG 57.146 41.667 0.00 0.00 37.82 1.85
2662 11993 8.905660 ATAAGAGCGTCTAGATCACTACTTTA 57.094 34.615 0.00 0.00 37.82 1.85
2663 11994 7.811117 ATAAGAGCGTCTAGATCACTACTTT 57.189 36.000 0.00 0.00 37.82 2.66
2664 11995 8.941977 CATATAAGAGCGTCTAGATCACTACTT 58.058 37.037 0.00 1.05 37.82 2.24
2665 11996 7.065324 GCATATAAGAGCGTCTAGATCACTACT 59.935 40.741 0.00 0.00 37.82 2.57
2666 11997 7.148390 TGCATATAAGAGCGTCTAGATCACTAC 60.148 40.741 0.00 0.00 37.82 2.73
2667 11998 6.879458 TGCATATAAGAGCGTCTAGATCACTA 59.121 38.462 0.00 0.00 37.82 2.74
2668 11999 5.707764 TGCATATAAGAGCGTCTAGATCACT 59.292 40.000 0.00 0.00 37.82 3.41
2669 12000 5.944013 TGCATATAAGAGCGTCTAGATCAC 58.056 41.667 0.00 0.00 37.82 3.06
2670 12001 6.765915 ATGCATATAAGAGCGTCTAGATCA 57.234 37.500 0.00 0.00 37.82 2.92
2671 12002 9.743057 ATTTATGCATATAAGAGCGTCTAGATC 57.257 33.333 7.36 0.00 35.01 2.75
2672 12003 9.526713 CATTTATGCATATAAGAGCGTCTAGAT 57.473 33.333 7.36 0.00 30.84 1.98
2673 12004 7.976175 CCATTTATGCATATAAGAGCGTCTAGA 59.024 37.037 7.36 0.00 30.84 2.43
2674 12005 7.761704 ACCATTTATGCATATAAGAGCGTCTAG 59.238 37.037 7.36 0.00 30.84 2.43
2675 12006 7.545615 CACCATTTATGCATATAAGAGCGTCTA 59.454 37.037 7.36 0.00 30.84 2.59
2676 12007 6.369890 CACCATTTATGCATATAAGAGCGTCT 59.630 38.462 7.36 0.00 30.84 4.18
2677 12008 6.147821 ACACCATTTATGCATATAAGAGCGTC 59.852 38.462 7.36 0.00 30.84 5.19
2678 12009 5.997746 ACACCATTTATGCATATAAGAGCGT 59.002 36.000 7.36 0.00 30.84 5.07
2679 12010 6.073058 ACACACCATTTATGCATATAAGAGCG 60.073 38.462 7.36 0.00 30.84 5.03
2680 12011 7.041167 TGACACACCATTTATGCATATAAGAGC 60.041 37.037 7.36 0.00 30.84 4.09
2681 12012 8.382030 TGACACACCATTTATGCATATAAGAG 57.618 34.615 7.36 1.13 30.84 2.85
2682 12013 8.744568 TTGACACACCATTTATGCATATAAGA 57.255 30.769 7.36 0.00 30.84 2.10
2685 12016 8.911965 ACATTTGACACACCATTTATGCATATA 58.088 29.630 7.36 2.92 0.00 0.86
2698 12029 6.426937 ACACATAAGAGTACATTTGACACACC 59.573 38.462 0.00 0.00 0.00 4.16
2787 12123 1.815003 GGGCTCTCCACAATTGACAAG 59.185 52.381 13.59 5.96 35.00 3.16
2794 12131 5.653255 ATATTAACAGGGCTCTCCACAAT 57.347 39.130 0.00 0.00 38.24 2.71
2813 12151 7.601886 CAGCTGTGCATCTAAACTAGCTAATAT 59.398 37.037 5.25 0.00 37.89 1.28
2836 12174 4.911514 TCGGCCTATTTTTATTTCCAGC 57.088 40.909 0.00 0.00 0.00 4.85
2875 12217 8.831715 AGACATTATGAAAACCAAAAATCCAC 57.168 30.769 0.00 0.00 0.00 4.02
3036 12379 8.988934 TCATTTTAACTCTTATGTGTCAGTCAC 58.011 33.333 0.00 0.00 46.31 3.67
3037 12380 9.554395 TTCATTTTAACTCTTATGTGTCAGTCA 57.446 29.630 0.00 0.00 0.00 3.41
3062 12406 6.652900 GTCTCAGCTTCCATTTAGTTCTCTTT 59.347 38.462 0.00 0.00 0.00 2.52
3102 12446 2.621556 AAGTGCCAATGGGGTTACAT 57.378 45.000 0.00 0.00 39.65 2.29
3109 12453 2.145536 GCTTCAAAAAGTGCCAATGGG 58.854 47.619 0.00 0.00 34.79 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.