Multiple sequence alignment - TraesCS3B01G479900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G479900 chr3B 100.000 5066 0 0 1 5066 728132206 728137271 0.000000e+00 9356.0
1 TraesCS3B01G479900 chr3B 88.115 589 34 17 4421 4991 728080880 728080310 0.000000e+00 667.0
2 TraesCS3B01G479900 chr3B 80.645 744 97 25 1660 2387 804373818 804374530 2.690000e-147 532.0
3 TraesCS3B01G479900 chr3B 84.190 525 76 5 2971 3490 804380206 804380728 2.110000e-138 503.0
4 TraesCS3B01G479900 chr3B 82.196 601 83 11 2971 3550 804319975 804320572 3.520000e-136 496.0
5 TraesCS3B01G479900 chr3B 82.881 479 71 7 2483 2957 804319248 804319719 2.180000e-113 420.0
6 TraesCS3B01G479900 chr3B 95.161 248 7 2 4425 4667 727937536 727937289 2.210000e-103 387.0
7 TraesCS3B01G479900 chr3B 81.905 420 59 11 1999 2414 804318810 804319216 6.280000e-89 339.0
8 TraesCS3B01G479900 chr3B 86.859 312 26 11 4666 4967 727932158 727931852 8.130000e-88 335.0
9 TraesCS3B01G479900 chr3B 80.297 472 59 15 2487 2953 804379506 804379948 4.890000e-85 326.0
10 TraesCS3B01G479900 chr3B 94.152 171 10 0 910 1080 804317413 804317583 1.400000e-65 261.0
11 TraesCS3B01G479900 chr3B 90.452 199 18 1 1771 1969 804318622 804318819 1.400000e-65 261.0
12 TraesCS3B01G479900 chr3B 76.504 532 74 29 3547 4056 804320608 804321110 5.070000e-60 243.0
13 TraesCS3B01G479900 chr3B 77.931 435 59 23 670 1077 375544167 375544591 2.360000e-58 237.0
14 TraesCS3B01G479900 chr3B 78.133 375 39 22 3551 3903 804380846 804381199 1.110000e-46 198.0
15 TraesCS3B01G479900 chr3B 82.258 248 24 11 4789 5031 727965791 727965559 4.000000e-46 196.0
16 TraesCS3B01G479900 chr3B 81.818 154 22 4 4460 4608 727966113 727965961 1.920000e-24 124.0
17 TraesCS3B01G479900 chr3D 89.398 2575 179 48 1738 4269 548815169 548817692 0.000000e+00 3157.0
18 TraesCS3B01G479900 chr3D 90.658 1231 68 32 350 1552 548813675 548814886 0.000000e+00 1592.0
19 TraesCS3B01G479900 chr3D 84.352 409 52 4 2500 2907 597618600 597618997 1.710000e-104 390.0
20 TraesCS3B01G479900 chr3D 83.333 402 53 6 2014 2415 597618176 597618563 4.820000e-95 359.0
21 TraesCS3B01G479900 chr3D 86.319 307 35 6 1668 1970 597617867 597618170 1.360000e-85 327.0
22 TraesCS3B01G479900 chr3D 85.489 317 30 7 4755 5065 548963022 548962716 2.940000e-82 316.0
23 TraesCS3B01G479900 chr3D 85.397 315 28 8 4757 5065 548821608 548821910 1.370000e-80 311.0
24 TraesCS3B01G479900 chr3D 90.654 214 8 4 4529 4739 548818075 548818279 1.800000e-69 274.0
25 TraesCS3B01G479900 chr3D 78.063 351 48 16 691 1024 597616763 597617101 1.440000e-45 195.0
26 TraesCS3B01G479900 chr3D 85.340 191 18 7 4425 4607 548803149 548802961 6.700000e-44 189.0
27 TraesCS3B01G479900 chr3D 87.273 165 18 3 1584 1747 548814967 548815129 8.660000e-43 185.0
28 TraesCS3B01G479900 chr3D 86.364 154 18 1 4789 4942 548802823 548802673 1.130000e-36 165.0
29 TraesCS3B01G479900 chr3D 79.087 263 38 9 1220 1480 597617306 597617553 1.130000e-36 165.0
30 TraesCS3B01G479900 chr3D 75.000 380 40 34 3551 3903 597619772 597620123 1.920000e-24 124.0
31 TraesCS3B01G479900 chr3A 91.010 1357 90 17 1592 2938 686241096 686242430 0.000000e+00 1801.0
32 TraesCS3B01G479900 chr3A 91.737 1065 50 13 349 1400 686239669 686240708 0.000000e+00 1445.0
33 TraesCS3B01G479900 chr3A 94.221 571 31 1 2969 3537 686242644 686243214 0.000000e+00 870.0
34 TraesCS3B01G479900 chr3A 86.222 704 46 24 4388 5065 686194391 686193713 0.000000e+00 715.0
35 TraesCS3B01G479900 chr3A 85.144 727 63 19 3554 4269 686243258 686243950 0.000000e+00 702.0
36 TraesCS3B01G479900 chr3A 80.799 776 109 23 1660 2415 727486572 727487327 5.690000e-159 571.0
37 TraesCS3B01G479900 chr3A 85.261 536 68 9 2971 3500 727488039 727488569 4.460000e-150 542.0
38 TraesCS3B01G479900 chr3A 87.136 412 22 14 4268 4672 686244018 686244405 6.020000e-119 438.0
39 TraesCS3B01G479900 chr3A 82.639 432 54 9 2484 2913 727487367 727487779 3.730000e-96 363.0
40 TraesCS3B01G479900 chr3A 94.643 168 9 0 910 1077 727485680 727485847 1.400000e-65 261.0
41 TraesCS3B01G479900 chr3A 74.636 343 39 27 3584 3903 727488676 727488993 1.930000e-19 108.0
42 TraesCS3B01G479900 chr3A 84.000 100 10 2 1344 1442 727486262 727486356 1.940000e-14 91.6
43 TraesCS3B01G479900 chr2A 81.402 742 101 22 1660 2383 605037267 605036545 5.690000e-159 571.0
44 TraesCS3B01G479900 chr2A 82.915 597 76 11 2977 3550 605035780 605035187 9.730000e-142 514.0
45 TraesCS3B01G479900 chr2A 84.783 506 73 4 2987 3490 605105547 605105044 5.850000e-139 505.0
46 TraesCS3B01G479900 chr2A 81.785 549 73 17 1859 2386 605106898 605106356 7.790000e-118 435.0
47 TraesCS3B01G479900 chr2A 83.441 465 47 21 623 1080 605038436 605037995 6.110000e-109 405.0
48 TraesCS3B01G479900 chr2A 81.075 428 50 11 2487 2913 605036470 605036073 3.810000e-81 313.0
49 TraesCS3B01G479900 chr2A 78.837 430 46 17 2487 2907 605106281 605105888 1.090000e-61 248.0
50 TraesCS3B01G479900 chr2A 93.210 162 11 0 919 1080 605112868 605112707 6.560000e-59 239.0
51 TraesCS3B01G479900 chr2A 80.851 282 40 9 1165 1442 605037754 605037483 5.140000e-50 209.0
52 TraesCS3B01G479900 chr2A 75.330 531 72 31 3553 4057 605104841 605104344 3.090000e-47 200.0
53 TraesCS3B01G479900 chr2A 77.557 352 39 20 3584 3914 605035047 605034715 5.210000e-40 176.0
54 TraesCS3B01G479900 chr4B 91.235 251 19 2 2 252 240119375 240119128 6.280000e-89 339.0
55 TraesCS3B01G479900 chr5B 83.051 236 34 4 1 233 166365171 166364939 5.140000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G479900 chr3B 728132206 728137271 5065 False 9356.000000 9356 100.000000 1 5066 1 chr3B.!!$F2 5065
1 TraesCS3B01G479900 chr3B 728080310 728080880 570 True 667.000000 667 88.115000 4421 4991 1 chr3B.!!$R3 570
2 TraesCS3B01G479900 chr3B 804373818 804374530 712 False 532.000000 532 80.645000 1660 2387 1 chr3B.!!$F3 727
3 TraesCS3B01G479900 chr3B 804379506 804381199 1693 False 342.333333 503 80.873333 2487 3903 3 chr3B.!!$F5 1416
4 TraesCS3B01G479900 chr3B 804317413 804321110 3697 False 336.666667 496 84.681667 910 4056 6 chr3B.!!$F4 3146
5 TraesCS3B01G479900 chr3D 548813675 548821910 8235 False 1103.800000 3157 88.676000 350 5065 5 chr3D.!!$F1 4715
6 TraesCS3B01G479900 chr3D 597616763 597620123 3360 False 260.000000 390 81.025667 691 3903 6 chr3D.!!$F2 3212
7 TraesCS3B01G479900 chr3A 686239669 686244405 4736 False 1051.200000 1801 89.849600 349 4672 5 chr3A.!!$F1 4323
8 TraesCS3B01G479900 chr3A 686193713 686194391 678 True 715.000000 715 86.222000 4388 5065 1 chr3A.!!$R1 677
9 TraesCS3B01G479900 chr3A 727485680 727488993 3313 False 322.766667 571 83.663000 910 3903 6 chr3A.!!$F2 2993
10 TraesCS3B01G479900 chr2A 605034715 605038436 3721 True 364.666667 571 81.206833 623 3914 6 chr2A.!!$R2 3291
11 TraesCS3B01G479900 chr2A 605104344 605106898 2554 True 347.000000 505 80.183750 1859 4057 4 chr2A.!!$R3 2198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 606 0.107945 GCGCTTCCTGTCCTTCTGAT 60.108 55.0 0.00 0.0 0.0 2.90 F
1558 2204 0.394762 TCAGCATTGCTCCCATGTCC 60.395 55.0 8.54 0.0 36.4 4.02 F
1561 2207 0.757935 GCATTGCTCCCATGTCCCAT 60.758 55.0 0.16 0.0 0.0 4.00 F
3223 4465 0.251341 AGCAAACACCCCCTCATGTC 60.251 55.0 0.00 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 2903 0.396139 ATGCATCATGGGCGGTCTTT 60.396 50.000 0.00 0.0 0.00 2.52 R
3223 4465 1.154654 GAAAGAGAACGCGTTGCCG 60.155 57.895 31.89 0.0 37.07 5.69 R
3399 4664 1.881973 GCAGACACAAGCTCATCCAAA 59.118 47.619 0.00 0.0 0.00 3.28 R
4939 9996 0.407528 TCCTCTGCCTCTGTCTCTGT 59.592 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.657814 CATTAATACTATGGGGTGGGCT 57.342 45.455 0.00 0.00 0.00 5.19
22 23 4.589908 CATTAATACTATGGGGTGGGCTC 58.410 47.826 0.00 0.00 0.00 4.70
23 24 2.514726 AATACTATGGGGTGGGCTCT 57.485 50.000 0.00 0.00 0.00 4.09
24 25 3.648683 AATACTATGGGGTGGGCTCTA 57.351 47.619 0.00 0.00 0.00 2.43
25 26 3.874374 ATACTATGGGGTGGGCTCTAT 57.126 47.619 0.00 0.00 0.00 1.98
26 27 2.514726 ACTATGGGGTGGGCTCTATT 57.485 50.000 0.00 0.00 0.00 1.73
27 28 2.789219 ACTATGGGGTGGGCTCTATTT 58.211 47.619 0.00 0.00 0.00 1.40
28 29 3.131252 ACTATGGGGTGGGCTCTATTTT 58.869 45.455 0.00 0.00 0.00 1.82
29 30 3.531814 ACTATGGGGTGGGCTCTATTTTT 59.468 43.478 0.00 0.00 0.00 1.94
48 49 4.627923 TTTTGTACGTCGATGGTTTACG 57.372 40.909 9.90 0.00 42.17 3.18
52 53 2.365823 CGTCGATGGTTTACGTGGG 58.634 57.895 0.00 0.00 32.16 4.61
53 54 1.689352 CGTCGATGGTTTACGTGGGC 61.689 60.000 0.00 0.00 32.16 5.36
54 55 1.446445 TCGATGGTTTACGTGGGCG 60.446 57.895 0.00 0.00 44.93 6.13
55 56 2.789249 GATGGTTTACGTGGGCGC 59.211 61.111 0.00 0.00 42.83 6.53
56 57 3.090960 GATGGTTTACGTGGGCGCG 62.091 63.158 0.00 0.00 42.83 6.86
59 60 4.439472 GTTTACGTGGGCGCGCTG 62.439 66.667 32.29 19.99 42.83 5.18
74 75 2.521465 CTGGTGCAACTGGCCCAA 60.521 61.111 2.04 0.00 43.89 4.12
75 76 2.837291 TGGTGCAACTGGCCCAAC 60.837 61.111 2.04 0.00 43.89 3.77
76 77 2.837291 GGTGCAACTGGCCCAACA 60.837 61.111 0.00 0.00 43.89 3.33
77 78 2.730094 GTGCAACTGGCCCAACAG 59.270 61.111 0.00 0.00 43.89 3.16
78 79 3.225798 TGCAACTGGCCCAACAGC 61.226 61.111 0.00 0.00 43.89 4.40
79 80 2.914097 GCAACTGGCCCAACAGCT 60.914 61.111 0.00 0.00 42.21 4.24
80 81 3.045142 CAACTGGCCCAACAGCTG 58.955 61.111 13.48 13.48 42.21 4.24
81 82 1.529010 CAACTGGCCCAACAGCTGA 60.529 57.895 23.35 0.00 42.21 4.26
82 83 1.108727 CAACTGGCCCAACAGCTGAA 61.109 55.000 23.35 0.00 42.21 3.02
83 84 0.825010 AACTGGCCCAACAGCTGAAG 60.825 55.000 23.35 11.95 42.21 3.02
84 85 2.598394 TGGCCCAACAGCTGAAGC 60.598 61.111 23.35 16.16 42.49 3.86
94 95 3.793144 GCTGAAGCGTTGGCCGAG 61.793 66.667 0.00 0.00 41.24 4.63
95 96 3.121030 CTGAAGCGTTGGCCGAGG 61.121 66.667 8.42 8.42 41.24 4.63
106 107 3.872431 GCCGAGGCCCAGTATAGT 58.128 61.111 0.00 0.00 34.56 2.12
107 108 2.134092 GCCGAGGCCCAGTATAGTT 58.866 57.895 0.00 0.00 34.56 2.24
108 109 1.335145 GCCGAGGCCCAGTATAGTTA 58.665 55.000 0.00 0.00 34.56 2.24
109 110 1.690352 GCCGAGGCCCAGTATAGTTAA 59.310 52.381 0.00 0.00 34.56 2.01
110 111 2.302157 GCCGAGGCCCAGTATAGTTAAT 59.698 50.000 0.00 0.00 34.56 1.40
111 112 3.244457 GCCGAGGCCCAGTATAGTTAATT 60.244 47.826 0.00 0.00 34.56 1.40
112 113 4.020839 GCCGAGGCCCAGTATAGTTAATTA 60.021 45.833 0.00 0.00 34.56 1.40
113 114 5.476614 CCGAGGCCCAGTATAGTTAATTAC 58.523 45.833 0.00 0.00 0.00 1.89
114 115 5.011329 CCGAGGCCCAGTATAGTTAATTACA 59.989 44.000 0.00 0.00 0.00 2.41
115 116 5.924825 CGAGGCCCAGTATAGTTAATTACAC 59.075 44.000 0.00 0.00 0.00 2.90
116 117 5.850614 AGGCCCAGTATAGTTAATTACACG 58.149 41.667 0.00 0.00 0.00 4.49
117 118 5.364735 AGGCCCAGTATAGTTAATTACACGT 59.635 40.000 0.00 0.00 0.00 4.49
118 119 5.464389 GGCCCAGTATAGTTAATTACACGTG 59.536 44.000 15.48 15.48 0.00 4.49
119 120 5.050567 GCCCAGTATAGTTAATTACACGTGC 60.051 44.000 17.22 0.00 0.00 5.34
120 121 5.174398 CCCAGTATAGTTAATTACACGTGCG 59.826 44.000 17.22 0.00 0.00 5.34
121 122 5.972973 CCAGTATAGTTAATTACACGTGCGA 59.027 40.000 17.22 4.45 0.00 5.10
122 123 6.141844 CCAGTATAGTTAATTACACGTGCGAG 59.858 42.308 17.22 0.00 0.00 5.03
123 124 6.908820 CAGTATAGTTAATTACACGTGCGAGA 59.091 38.462 17.22 0.00 0.00 4.04
124 125 7.111732 CAGTATAGTTAATTACACGTGCGAGAG 59.888 40.741 17.22 0.00 0.00 3.20
157 158 8.425577 AGAAATATATGACAACTCGACTTTGG 57.574 34.615 6.90 0.00 0.00 3.28
158 159 8.041323 AGAAATATATGACAACTCGACTTTGGT 58.959 33.333 6.90 0.00 0.00 3.67
159 160 7.772332 AATATATGACAACTCGACTTTGGTC 57.228 36.000 6.90 0.00 38.97 4.02
160 161 2.971660 TGACAACTCGACTTTGGTCA 57.028 45.000 6.90 0.00 42.21 4.02
161 162 2.546778 TGACAACTCGACTTTGGTCAC 58.453 47.619 6.90 0.00 42.21 3.67
162 163 2.093921 TGACAACTCGACTTTGGTCACA 60.094 45.455 6.90 0.59 42.21 3.58
163 164 2.933906 GACAACTCGACTTTGGTCACAA 59.066 45.455 6.90 0.00 42.21 3.33
164 165 2.676342 ACAACTCGACTTTGGTCACAAC 59.324 45.455 6.90 0.00 42.21 3.32
165 166 2.675844 CAACTCGACTTTGGTCACAACA 59.324 45.455 0.00 0.00 42.21 3.33
166 167 2.980568 ACTCGACTTTGGTCACAACAA 58.019 42.857 0.00 0.00 42.21 2.83
167 168 3.541632 ACTCGACTTTGGTCACAACAAT 58.458 40.909 0.00 0.00 42.21 2.71
168 169 3.945285 ACTCGACTTTGGTCACAACAATT 59.055 39.130 0.00 0.00 42.21 2.32
169 170 5.120399 ACTCGACTTTGGTCACAACAATTA 58.880 37.500 0.00 0.00 42.21 1.40
170 171 5.236478 ACTCGACTTTGGTCACAACAATTAG 59.764 40.000 0.00 0.00 42.21 1.73
171 172 4.024387 TCGACTTTGGTCACAACAATTAGC 60.024 41.667 0.00 0.00 42.21 3.09
172 173 4.546570 GACTTTGGTCACAACAATTAGCC 58.453 43.478 0.00 0.00 41.75 3.93
173 174 3.004315 ACTTTGGTCACAACAATTAGCCG 59.996 43.478 0.00 0.00 36.06 5.52
174 175 2.264005 TGGTCACAACAATTAGCCGT 57.736 45.000 0.00 0.00 0.00 5.68
175 176 2.147958 TGGTCACAACAATTAGCCGTC 58.852 47.619 0.00 0.00 0.00 4.79
176 177 2.147958 GGTCACAACAATTAGCCGTCA 58.852 47.619 0.00 0.00 0.00 4.35
177 178 2.095919 GGTCACAACAATTAGCCGTCAC 60.096 50.000 0.00 0.00 0.00 3.67
178 179 2.546368 GTCACAACAATTAGCCGTCACA 59.454 45.455 0.00 0.00 0.00 3.58
179 180 3.188460 GTCACAACAATTAGCCGTCACAT 59.812 43.478 0.00 0.00 0.00 3.21
180 181 3.818210 TCACAACAATTAGCCGTCACATT 59.182 39.130 0.00 0.00 0.00 2.71
181 182 4.277174 TCACAACAATTAGCCGTCACATTT 59.723 37.500 0.00 0.00 0.00 2.32
182 183 4.382457 CACAACAATTAGCCGTCACATTTG 59.618 41.667 0.00 0.00 0.00 2.32
183 184 3.848272 ACAATTAGCCGTCACATTTGG 57.152 42.857 0.00 0.00 0.00 3.28
184 185 3.153919 ACAATTAGCCGTCACATTTGGT 58.846 40.909 0.00 0.00 0.00 3.67
185 186 3.190535 ACAATTAGCCGTCACATTTGGTC 59.809 43.478 0.00 0.00 0.00 4.02
186 187 2.552599 TTAGCCGTCACATTTGGTCA 57.447 45.000 0.00 0.00 0.00 4.02
187 188 2.779755 TAGCCGTCACATTTGGTCAT 57.220 45.000 0.00 0.00 0.00 3.06
188 189 1.909700 AGCCGTCACATTTGGTCATT 58.090 45.000 0.00 0.00 0.00 2.57
189 190 1.541147 AGCCGTCACATTTGGTCATTG 59.459 47.619 0.00 0.00 0.00 2.82
190 191 1.981254 CCGTCACATTTGGTCATTGC 58.019 50.000 0.00 0.00 0.00 3.56
191 192 1.605500 CGTCACATTTGGTCATTGCG 58.394 50.000 0.00 0.00 0.00 4.85
192 193 1.069296 CGTCACATTTGGTCATTGCGT 60.069 47.619 0.00 0.00 0.00 5.24
193 194 2.604373 CGTCACATTTGGTCATTGCGTT 60.604 45.455 0.00 0.00 0.00 4.84
194 195 2.725723 GTCACATTTGGTCATTGCGTTG 59.274 45.455 0.00 0.00 0.00 4.10
195 196 1.456544 CACATTTGGTCATTGCGTTGC 59.543 47.619 0.00 0.00 0.00 4.17
196 197 0.709467 CATTTGGTCATTGCGTTGCG 59.291 50.000 0.00 0.00 0.00 4.85
207 208 3.787676 CGTTGCGCCTTCGATGCA 61.788 61.111 4.18 0.00 38.10 3.96
208 209 2.560861 GTTGCGCCTTCGATGCAA 59.439 55.556 4.18 9.81 45.54 4.08
209 210 2.869646 TTGCGCCTTCGATGCAAG 59.130 55.556 4.18 0.00 43.13 4.01
210 211 1.670730 TTGCGCCTTCGATGCAAGA 60.671 52.632 4.18 0.00 43.13 3.02
211 212 1.233950 TTGCGCCTTCGATGCAAGAA 61.234 50.000 4.18 7.59 43.13 2.52
212 213 1.233950 TGCGCCTTCGATGCAAGAAA 61.234 50.000 4.18 0.00 38.10 2.52
213 214 0.109781 GCGCCTTCGATGCAAGAAAA 60.110 50.000 0.00 0.00 38.10 2.29
214 215 1.665735 GCGCCTTCGATGCAAGAAAAA 60.666 47.619 0.00 0.00 38.10 1.94
215 216 2.245096 CGCCTTCGATGCAAGAAAAAG 58.755 47.619 8.91 1.32 38.10 2.27
216 217 2.599659 GCCTTCGATGCAAGAAAAAGG 58.400 47.619 8.91 9.83 37.04 3.11
217 218 2.029918 GCCTTCGATGCAAGAAAAAGGT 60.030 45.455 14.38 0.00 36.48 3.50
218 219 3.826466 CCTTCGATGCAAGAAAAAGGTC 58.174 45.455 8.91 0.00 0.00 3.85
219 220 3.503748 CCTTCGATGCAAGAAAAAGGTCT 59.496 43.478 8.91 0.00 0.00 3.85
220 221 4.378874 CCTTCGATGCAAGAAAAAGGTCTC 60.379 45.833 8.91 0.00 0.00 3.36
221 222 3.074412 TCGATGCAAGAAAAAGGTCTCC 58.926 45.455 0.00 0.00 0.00 3.71
222 223 2.159653 CGATGCAAGAAAAAGGTCTCCG 60.160 50.000 0.00 0.00 0.00 4.63
223 224 1.604604 TGCAAGAAAAAGGTCTCCGG 58.395 50.000 0.00 0.00 0.00 5.14
224 225 1.133915 TGCAAGAAAAAGGTCTCCGGT 60.134 47.619 0.00 0.00 0.00 5.28
225 226 1.954382 GCAAGAAAAAGGTCTCCGGTT 59.046 47.619 0.00 0.00 0.00 4.44
226 227 2.361119 GCAAGAAAAAGGTCTCCGGTTT 59.639 45.455 0.00 0.00 0.00 3.27
227 228 3.795488 GCAAGAAAAAGGTCTCCGGTTTG 60.795 47.826 0.00 0.00 0.00 2.93
228 229 3.570912 AGAAAAAGGTCTCCGGTTTGA 57.429 42.857 0.00 0.00 0.00 2.69
229 230 3.893521 AGAAAAAGGTCTCCGGTTTGAA 58.106 40.909 0.00 0.00 0.00 2.69
230 231 4.470602 AGAAAAAGGTCTCCGGTTTGAAT 58.529 39.130 0.00 0.00 0.00 2.57
231 232 4.519350 AGAAAAAGGTCTCCGGTTTGAATC 59.481 41.667 0.00 0.00 0.00 2.52
232 233 2.491675 AAGGTCTCCGGTTTGAATCC 57.508 50.000 0.00 0.00 0.00 3.01
233 234 0.618981 AGGTCTCCGGTTTGAATCCC 59.381 55.000 0.00 0.00 0.00 3.85
234 235 0.743345 GGTCTCCGGTTTGAATCCCG 60.743 60.000 0.00 0.00 43.82 5.14
238 239 3.505184 CGGTTTGAATCCCGGGCG 61.505 66.667 18.49 7.11 40.54 6.13
239 240 3.822192 GGTTTGAATCCCGGGCGC 61.822 66.667 18.49 7.97 0.00 6.53
240 241 3.059386 GTTTGAATCCCGGGCGCA 61.059 61.111 18.49 10.91 0.00 6.09
241 242 3.059386 TTTGAATCCCGGGCGCAC 61.059 61.111 18.49 3.71 0.00 5.34
242 243 3.851897 TTTGAATCCCGGGCGCACA 62.852 57.895 18.49 10.53 0.00 4.57
243 244 3.851897 TTGAATCCCGGGCGCACAA 62.852 57.895 18.49 16.02 0.00 3.33
244 245 2.828549 GAATCCCGGGCGCACAAT 60.829 61.111 18.49 0.00 0.00 2.71
245 246 1.525077 GAATCCCGGGCGCACAATA 60.525 57.895 18.49 0.00 0.00 1.90
246 247 0.889186 GAATCCCGGGCGCACAATAT 60.889 55.000 18.49 0.00 0.00 1.28
247 248 0.467290 AATCCCGGGCGCACAATATT 60.467 50.000 18.49 4.55 0.00 1.28
248 249 0.467290 ATCCCGGGCGCACAATATTT 60.467 50.000 18.49 0.00 0.00 1.40
249 250 0.681564 TCCCGGGCGCACAATATTTT 60.682 50.000 18.49 0.00 0.00 1.82
250 251 0.174617 CCCGGGCGCACAATATTTTT 59.825 50.000 8.08 0.00 0.00 1.94
302 303 9.771534 ATAGATATAAAGAGTGAGGAAAACTGC 57.228 33.333 0.00 0.00 0.00 4.40
303 304 7.856415 AGATATAAAGAGTGAGGAAAACTGCT 58.144 34.615 0.00 0.00 0.00 4.24
304 305 8.325046 AGATATAAAGAGTGAGGAAAACTGCTT 58.675 33.333 0.00 0.00 0.00 3.91
305 306 6.809630 ATAAAGAGTGAGGAAAACTGCTTC 57.190 37.500 0.00 0.00 0.00 3.86
306 307 2.760374 AGAGTGAGGAAAACTGCTTCG 58.240 47.619 0.00 0.00 0.00 3.79
307 308 2.365617 AGAGTGAGGAAAACTGCTTCGA 59.634 45.455 0.00 0.00 0.00 3.71
308 309 2.734079 GAGTGAGGAAAACTGCTTCGAG 59.266 50.000 0.00 0.00 0.00 4.04
309 310 2.365617 AGTGAGGAAAACTGCTTCGAGA 59.634 45.455 0.00 0.00 0.00 4.04
310 311 2.734079 GTGAGGAAAACTGCTTCGAGAG 59.266 50.000 0.00 0.00 0.00 3.20
311 312 2.628178 TGAGGAAAACTGCTTCGAGAGA 59.372 45.455 0.00 0.00 39.20 3.10
312 313 3.249917 GAGGAAAACTGCTTCGAGAGAG 58.750 50.000 0.00 0.00 43.69 3.20
313 314 2.630580 AGGAAAACTGCTTCGAGAGAGT 59.369 45.455 0.00 0.00 43.69 3.24
314 315 3.827302 AGGAAAACTGCTTCGAGAGAGTA 59.173 43.478 0.00 0.00 43.69 2.59
315 316 4.281182 AGGAAAACTGCTTCGAGAGAGTAA 59.719 41.667 0.00 0.00 43.69 2.24
316 317 5.046950 AGGAAAACTGCTTCGAGAGAGTAAT 60.047 40.000 0.00 0.00 43.69 1.89
317 318 6.153000 AGGAAAACTGCTTCGAGAGAGTAATA 59.847 38.462 0.00 0.00 43.69 0.98
318 319 6.981559 GGAAAACTGCTTCGAGAGAGTAATAT 59.018 38.462 0.00 0.00 43.69 1.28
319 320 7.168469 GGAAAACTGCTTCGAGAGAGTAATATC 59.832 40.741 0.00 0.00 43.69 1.63
320 321 6.701145 AACTGCTTCGAGAGAGTAATATCA 57.299 37.500 0.00 0.00 43.69 2.15
321 322 6.067263 ACTGCTTCGAGAGAGTAATATCAC 57.933 41.667 0.00 0.00 43.69 3.06
322 323 5.825679 ACTGCTTCGAGAGAGTAATATCACT 59.174 40.000 0.00 0.00 43.69 3.41
323 324 6.320164 ACTGCTTCGAGAGAGTAATATCACTT 59.680 38.462 0.00 0.00 43.69 3.16
324 325 6.730175 TGCTTCGAGAGAGTAATATCACTTC 58.270 40.000 0.00 0.00 43.69 3.01
325 326 6.146898 GCTTCGAGAGAGTAATATCACTTCC 58.853 44.000 0.00 0.00 43.69 3.46
326 327 6.636562 TTCGAGAGAGTAATATCACTTCCC 57.363 41.667 0.00 0.00 43.69 3.97
327 328 4.755629 TCGAGAGAGTAATATCACTTCCCG 59.244 45.833 0.00 0.00 34.84 5.14
328 329 4.755629 CGAGAGAGTAATATCACTTCCCGA 59.244 45.833 0.00 0.00 0.00 5.14
329 330 5.238868 CGAGAGAGTAATATCACTTCCCGAA 59.761 44.000 0.00 0.00 0.00 4.30
330 331 6.238676 CGAGAGAGTAATATCACTTCCCGAAA 60.239 42.308 0.00 0.00 0.00 3.46
331 332 7.419711 AGAGAGTAATATCACTTCCCGAAAA 57.580 36.000 0.00 0.00 0.00 2.29
332 333 7.493367 AGAGAGTAATATCACTTCCCGAAAAG 58.507 38.462 0.00 0.00 0.00 2.27
333 334 7.342284 AGAGAGTAATATCACTTCCCGAAAAGA 59.658 37.037 4.08 0.00 0.00 2.52
334 335 7.493367 AGAGTAATATCACTTCCCGAAAAGAG 58.507 38.462 4.08 0.00 0.00 2.85
335 336 7.342284 AGAGTAATATCACTTCCCGAAAAGAGA 59.658 37.037 4.08 2.41 31.79 3.10
336 337 7.493367 AGTAATATCACTTCCCGAAAAGAGAG 58.507 38.462 4.08 0.00 30.95 3.20
337 338 6.546428 AATATCACTTCCCGAAAAGAGAGA 57.454 37.500 4.08 0.23 30.95 3.10
338 339 3.944055 TCACTTCCCGAAAAGAGAGAG 57.056 47.619 4.08 0.00 0.00 3.20
339 340 3.497332 TCACTTCCCGAAAAGAGAGAGA 58.503 45.455 4.08 0.00 0.00 3.10
340 341 3.508012 TCACTTCCCGAAAAGAGAGAGAG 59.492 47.826 4.08 0.00 0.00 3.20
341 342 3.508012 CACTTCCCGAAAAGAGAGAGAGA 59.492 47.826 4.08 0.00 0.00 3.10
342 343 3.761752 ACTTCCCGAAAAGAGAGAGAGAG 59.238 47.826 4.08 0.00 0.00 3.20
343 344 3.722908 TCCCGAAAAGAGAGAGAGAGA 57.277 47.619 0.00 0.00 0.00 3.10
344 345 3.616219 TCCCGAAAAGAGAGAGAGAGAG 58.384 50.000 0.00 0.00 0.00 3.20
345 346 3.009695 TCCCGAAAAGAGAGAGAGAGAGT 59.990 47.826 0.00 0.00 0.00 3.24
346 347 4.225492 TCCCGAAAAGAGAGAGAGAGAGTA 59.775 45.833 0.00 0.00 0.00 2.59
347 348 4.944930 CCCGAAAAGAGAGAGAGAGAGTAA 59.055 45.833 0.00 0.00 0.00 2.24
348 349 5.592688 CCCGAAAAGAGAGAGAGAGAGTAAT 59.407 44.000 0.00 0.00 0.00 1.89
349 350 6.768861 CCCGAAAAGAGAGAGAGAGAGTAATA 59.231 42.308 0.00 0.00 0.00 0.98
350 351 7.447238 CCCGAAAAGAGAGAGAGAGAGTAATAT 59.553 40.741 0.00 0.00 0.00 1.28
351 352 8.504005 CCGAAAAGAGAGAGAGAGAGTAATATC 58.496 40.741 0.00 0.00 0.00 1.63
352 353 9.051679 CGAAAAGAGAGAGAGAGAGTAATATCA 57.948 37.037 0.00 0.00 0.00 2.15
354 355 9.693739 AAAAGAGAGAGAGAGAGTAATATCACA 57.306 33.333 0.00 0.00 0.00 3.58
355 356 9.866655 AAAGAGAGAGAGAGAGTAATATCACAT 57.133 33.333 0.00 0.00 0.00 3.21
481 484 1.954528 CGTACCTCACCGACACACT 59.045 57.895 0.00 0.00 0.00 3.55
516 519 2.923035 ACCCCACGGACCAGTGAG 60.923 66.667 15.29 9.96 44.43 3.51
517 520 4.394712 CCCCACGGACCAGTGAGC 62.395 72.222 15.29 0.00 44.43 4.26
603 606 0.107945 GCGCTTCCTGTCCTTCTGAT 60.108 55.000 0.00 0.00 0.00 2.90
1080 1124 2.202756 CTCACGGCCGAGGTAAGC 60.203 66.667 35.90 0.00 0.00 3.09
1162 1571 2.921821 TCGTCAATGATGGATGTGCAT 58.078 42.857 2.27 0.00 0.00 3.96
1163 1572 2.874086 TCGTCAATGATGGATGTGCATC 59.126 45.455 7.47 7.47 37.11 3.91
1164 1573 2.614983 CGTCAATGATGGATGTGCATCA 59.385 45.455 17.56 17.56 41.37 3.07
1165 1574 3.303791 CGTCAATGATGGATGTGCATCAG 60.304 47.826 19.45 9.50 40.59 2.90
1166 1575 2.621526 TCAATGATGGATGTGCATCAGC 59.378 45.455 19.45 0.00 40.59 4.26
1393 1802 7.066404 GTCCAAGGTCATCTCCTTATTTTTCTC 59.934 40.741 0.00 0.00 44.87 2.87
1402 1943 7.324388 TCTCCTTATTTTTCTCCAGTACCAA 57.676 36.000 0.00 0.00 0.00 3.67
1403 1944 7.751646 TCTCCTTATTTTTCTCCAGTACCAAA 58.248 34.615 0.00 0.00 0.00 3.28
1404 1945 8.390921 TCTCCTTATTTTTCTCCAGTACCAAAT 58.609 33.333 0.00 0.00 0.00 2.32
1405 1946 8.950007 TCCTTATTTTTCTCCAGTACCAAATT 57.050 30.769 0.00 0.00 0.00 1.82
1410 1951 8.934023 ATTTTTCTCCAGTACCAAATTAGTGA 57.066 30.769 0.00 0.00 0.00 3.41
1411 1952 8.754991 TTTTTCTCCAGTACCAAATTAGTGAA 57.245 30.769 0.00 0.00 0.00 3.18
1412 1953 7.979444 TTTCTCCAGTACCAAATTAGTGAAG 57.021 36.000 0.00 0.00 0.00 3.02
1413 1954 6.681729 TCTCCAGTACCAAATTAGTGAAGT 57.318 37.500 0.00 0.00 0.00 3.01
1414 1955 7.786046 TCTCCAGTACCAAATTAGTGAAGTA 57.214 36.000 0.00 0.00 0.00 2.24
1415 1956 7.837863 TCTCCAGTACCAAATTAGTGAAGTAG 58.162 38.462 0.00 0.00 0.00 2.57
1416 1957 7.453752 TCTCCAGTACCAAATTAGTGAAGTAGT 59.546 37.037 0.00 0.00 0.00 2.73
1417 1958 8.654485 TCCAGTACCAAATTAGTGAAGTAGTA 57.346 34.615 0.00 0.00 0.00 1.82
1418 1959 9.263446 TCCAGTACCAAATTAGTGAAGTAGTAT 57.737 33.333 0.00 0.00 0.00 2.12
1419 1960 9.886132 CCAGTACCAAATTAGTGAAGTAGTATT 57.114 33.333 0.00 0.00 0.00 1.89
1425 1966 9.341899 CCAAATTAGTGAAGTAGTATTTGTTGC 57.658 33.333 0.00 0.00 0.00 4.17
1480 2023 4.906618 AGTTTTATCCAGTGATCGGTTGT 58.093 39.130 0.00 0.00 32.18 3.32
1482 2025 4.545208 TTTATCCAGTGATCGGTTGTCA 57.455 40.909 0.00 0.00 32.18 3.58
1483 2026 2.680312 ATCCAGTGATCGGTTGTCAG 57.320 50.000 0.00 0.00 0.00 3.51
1496 2075 2.613977 GGTTGTCAGTGATGGGTGAGAG 60.614 54.545 0.00 0.00 0.00 3.20
1516 2095 6.369890 TGAGAGCAAGTTCAGTTTATCATGAC 59.630 38.462 0.00 0.00 0.00 3.06
1525 2104 5.419542 TCAGTTTATCATGACTGTACAGCC 58.580 41.667 22.90 12.90 42.90 4.85
1555 2201 1.389609 GGGTCAGCATTGCTCCCATG 61.390 60.000 23.95 9.05 36.40 3.66
1556 2202 0.682209 GGTCAGCATTGCTCCCATGT 60.682 55.000 8.54 0.00 36.40 3.21
1557 2203 0.737219 GTCAGCATTGCTCCCATGTC 59.263 55.000 8.54 0.00 36.40 3.06
1558 2204 0.394762 TCAGCATTGCTCCCATGTCC 60.395 55.000 8.54 0.00 36.40 4.02
1559 2205 1.076485 AGCATTGCTCCCATGTCCC 60.076 57.895 5.03 0.00 30.62 4.46
1560 2206 1.380246 GCATTGCTCCCATGTCCCA 60.380 57.895 0.16 0.00 0.00 4.37
1561 2207 0.757935 GCATTGCTCCCATGTCCCAT 60.758 55.000 0.16 0.00 0.00 4.00
1562 2208 1.479205 GCATTGCTCCCATGTCCCATA 60.479 52.381 0.16 0.00 0.00 2.74
1563 2209 2.820485 GCATTGCTCCCATGTCCCATAT 60.820 50.000 0.16 0.00 0.00 1.78
1564 2210 2.957402 TTGCTCCCATGTCCCATATC 57.043 50.000 0.00 0.00 0.00 1.63
1565 2211 1.818419 TGCTCCCATGTCCCATATCA 58.182 50.000 0.00 0.00 0.00 2.15
1566 2212 2.351394 TGCTCCCATGTCCCATATCAT 58.649 47.619 0.00 0.00 0.00 2.45
1582 2228 7.636150 CCATATCATTCATAGGGGATTTGAC 57.364 40.000 0.00 0.00 35.54 3.18
1583 2229 7.177184 CCATATCATTCATAGGGGATTTGACA 58.823 38.462 0.00 0.00 35.54 3.58
1584 2230 7.670979 CCATATCATTCATAGGGGATTTGACAA 59.329 37.037 0.00 0.00 35.54 3.18
1585 2231 9.081204 CATATCATTCATAGGGGATTTGACAAA 57.919 33.333 2.48 2.48 0.00 2.83
1586 2232 7.976414 ATCATTCATAGGGGATTTGACAAAA 57.024 32.000 4.41 0.00 0.00 2.44
1605 2328 5.763204 ACAAAACATGTAGTCCATTCGAACT 59.237 36.000 0.00 0.00 41.63 3.01
1629 2363 5.244851 TGAGGGTAGATCATGATGAGTAAGC 59.755 44.000 14.30 3.30 0.00 3.09
1633 2367 6.995091 GGGTAGATCATGATGAGTAAGCTTTT 59.005 38.462 14.30 0.00 0.00 2.27
1710 2481 6.131544 ACACGTTTTCTTGCTAACATCTTT 57.868 33.333 0.00 0.00 0.00 2.52
1715 2486 6.690957 CGTTTTCTTGCTAACATCTTTGTTGA 59.309 34.615 1.76 0.00 45.56 3.18
1760 2595 6.867662 TCTTGTCTCTGTGATTTTCCTTTC 57.132 37.500 0.00 0.00 0.00 2.62
1763 2598 5.928976 TGTCTCTGTGATTTTCCTTTCAGA 58.071 37.500 0.00 0.00 0.00 3.27
1806 2641 4.427312 GCAAATTTAGGCATCTTCCTGTG 58.573 43.478 0.00 0.00 37.01 3.66
1979 2870 9.967346 AGGTTTCTTTCTTCAGTTTATTTTAGC 57.033 29.630 0.00 0.00 0.00 3.09
1980 2871 9.744468 GGTTTCTTTCTTCAGTTTATTTTAGCA 57.256 29.630 0.00 0.00 0.00 3.49
2019 2910 8.455682 TGCTACTTATTCCAATTTTAAAGACCG 58.544 33.333 0.00 0.00 0.00 4.79
2043 2934 5.014202 CCCATGATGCATTCCATTCAGATA 58.986 41.667 0.00 0.00 33.29 1.98
2051 2942 6.509656 TGCATTCCATTCAGATATCTTTTGC 58.490 36.000 1.33 4.64 0.00 3.68
2054 2945 8.355169 GCATTCCATTCAGATATCTTTTGCTAA 58.645 33.333 1.33 0.00 0.00 3.09
2055 2946 9.674824 CATTCCATTCAGATATCTTTTGCTAAC 57.325 33.333 1.33 0.00 0.00 2.34
2056 2947 9.638176 ATTCCATTCAGATATCTTTTGCTAACT 57.362 29.630 1.33 0.00 0.00 2.24
2087 2997 6.726379 TGATGTCATATTTTGGGTCCTTACA 58.274 36.000 0.00 0.00 0.00 2.41
2135 3045 4.600692 TCTTCGAGACCAGATGTTCAAA 57.399 40.909 0.00 0.00 0.00 2.69
2157 3067 8.762645 TCAAACCTTCTCTGTCAACTATCATAT 58.237 33.333 0.00 0.00 0.00 1.78
2537 3470 1.603739 GGCACAAAGTCTGTCCCCC 60.604 63.158 0.00 0.00 35.47 5.40
2597 3534 4.045636 ACTGAAGCACCAACATTTTGAC 57.954 40.909 0.00 0.00 34.24 3.18
2598 3535 3.446873 ACTGAAGCACCAACATTTTGACA 59.553 39.130 0.00 0.00 34.24 3.58
2615 3564 9.198837 CATTTTGACAGATCATGATTTTGTTCA 57.801 29.630 20.91 17.46 33.85 3.18
2616 3565 9.938280 ATTTTGACAGATCATGATTTTGTTCAT 57.062 25.926 20.91 11.87 36.79 2.57
2617 3566 9.767228 TTTTGACAGATCATGATTTTGTTCATT 57.233 25.926 20.91 5.16 34.09 2.57
2745 3705 3.383620 TGCAAGATGGCAAATTTCGTT 57.616 38.095 0.00 0.00 41.65 3.85
2787 3747 9.209175 ACAAAAGCAAGTACTACTGAATTCTAG 57.791 33.333 7.05 3.73 0.00 2.43
2798 3758 7.777095 ACTACTGAATTCTAGCAGTAAAGAGG 58.223 38.462 7.05 0.00 44.36 3.69
2802 3762 7.616150 ACTGAATTCTAGCAGTAAAGAGGAGTA 59.384 37.037 7.05 0.00 43.10 2.59
2879 3846 4.872691 CCTGTTTGGATGCTCTACAGTTAG 59.127 45.833 10.96 0.00 38.35 2.34
3006 4241 2.732619 GGGAGCCTCCGGACGAAAT 61.733 63.158 0.00 0.00 37.43 2.17
3010 4245 1.340248 GAGCCTCCGGACGAAATGATA 59.660 52.381 0.00 0.00 0.00 2.15
3011 4246 1.068741 AGCCTCCGGACGAAATGATAC 59.931 52.381 0.00 0.00 0.00 2.24
3169 4405 6.785488 TTTGTTATGTAGTGCAGTGAAGAG 57.215 37.500 3.69 0.00 0.00 2.85
3195 4431 2.029666 GGCAGCGTCAGACAGTGT 59.970 61.111 0.00 0.00 0.00 3.55
3223 4465 0.251341 AGCAAACACCCCCTCATGTC 60.251 55.000 0.00 0.00 0.00 3.06
3314 4556 5.649831 GGCATTTCTCATCTTACTTTCCTGT 59.350 40.000 0.00 0.00 0.00 4.00
3377 4642 4.455606 CCTGAAGTTCTGATTATGGACCC 58.544 47.826 11.06 0.00 0.00 4.46
3399 4664 3.495806 CCCTTTCTGCAGTTTCAGAGAGT 60.496 47.826 14.67 0.00 43.23 3.24
3537 4910 3.153369 TCAAGTGAGCAATAGGGCAAA 57.847 42.857 0.00 0.00 35.83 3.68
3539 4912 1.839424 AGTGAGCAATAGGGCAAACC 58.161 50.000 0.00 0.00 40.67 3.27
3551 4959 1.686587 GGGCAAACCAAAGCTTGTACT 59.313 47.619 0.00 0.00 39.85 2.73
3553 4961 3.381045 GGCAAACCAAAGCTTGTACTTC 58.619 45.455 0.00 0.00 35.26 3.01
3559 4967 6.803154 AACCAAAGCTTGTACTTCTGTATC 57.197 37.500 0.00 0.00 0.00 2.24
3570 4992 8.547967 TTGTACTTCTGTATCTTTTCACATCC 57.452 34.615 0.00 0.00 0.00 3.51
3576 4998 5.939883 TCTGTATCTTTTCACATCCCACTTG 59.060 40.000 0.00 0.00 0.00 3.16
3625 5127 5.070981 TGATGAAGGTGACAGAGTTCTTCTT 59.929 40.000 0.00 0.00 35.98 2.52
3628 5130 2.147150 GGTGACAGAGTTCTTCTTGCC 58.853 52.381 0.00 0.00 32.41 4.52
3631 5133 2.435805 TGACAGAGTTCTTCTTGCCACT 59.564 45.455 0.00 0.00 32.41 4.00
3664 5166 2.156051 TTGCGGCAATTGAGCATGCA 62.156 50.000 21.98 15.05 44.32 3.96
3757 5280 0.530650 TATGCGCAACAGCTAGAGCC 60.531 55.000 17.11 0.00 43.38 4.70
3759 5282 1.141881 GCGCAACAGCTAGAGCCTA 59.858 57.895 0.30 0.00 43.38 3.93
3760 5283 0.873743 GCGCAACAGCTAGAGCCTAG 60.874 60.000 0.30 5.20 43.38 3.02
3761 5284 0.741326 CGCAACAGCTAGAGCCTAGA 59.259 55.000 11.96 0.00 43.38 2.43
3762 5285 1.268999 CGCAACAGCTAGAGCCTAGAG 60.269 57.143 11.96 6.88 43.38 2.43
3763 5286 1.537990 GCAACAGCTAGAGCCTAGAGC 60.538 57.143 11.96 2.02 43.38 4.09
3775 5298 5.195940 AGAGCCTAGAGCATTTTTAATGCA 58.804 37.500 22.14 0.00 46.77 3.96
3776 5299 5.832060 AGAGCCTAGAGCATTTTTAATGCAT 59.168 36.000 22.14 14.29 46.77 3.96
3778 5301 6.510536 AGCCTAGAGCATTTTTAATGCATTC 58.489 36.000 16.86 13.75 46.77 2.67
3780 5303 6.927381 GCCTAGAGCATTTTTAATGCATTCAT 59.073 34.615 16.86 1.40 46.77 2.57
3781 5304 7.115947 GCCTAGAGCATTTTTAATGCATTCATC 59.884 37.037 16.86 12.60 46.77 2.92
3782 5305 7.325338 CCTAGAGCATTTTTAATGCATTCATCG 59.675 37.037 16.86 2.32 46.77 3.84
3783 5306 6.567050 AGAGCATTTTTAATGCATTCATCGT 58.433 32.000 16.86 0.00 46.77 3.73
3784 5307 6.694411 AGAGCATTTTTAATGCATTCATCGTC 59.306 34.615 16.86 10.91 46.77 4.20
3785 5308 5.456497 AGCATTTTTAATGCATTCATCGTCG 59.544 36.000 16.86 1.88 46.77 5.12
3786 5309 5.229887 GCATTTTTAATGCATTCATCGTCGT 59.770 36.000 16.86 0.00 44.00 4.34
3787 5310 6.558433 GCATTTTTAATGCATTCATCGTCGTC 60.558 38.462 16.86 0.00 44.00 4.20
3804 5333 3.555956 GTCGTCTTCTTCTTCTTGCAACA 59.444 43.478 0.00 0.00 0.00 3.33
3952 5502 2.672961 TTCCTCGTTGCCTGTAGATG 57.327 50.000 0.00 0.00 0.00 2.90
3958 5508 0.811616 GTTGCCTGTAGATGCCTCGG 60.812 60.000 0.00 0.00 0.00 4.63
3964 5514 2.758327 TAGATGCCTCGGTGCCGT 60.758 61.111 10.60 0.00 40.74 5.68
3985 5535 4.899239 GAGGCTGGCCATCGTCCG 62.899 72.222 16.61 0.40 38.92 4.79
4002 5552 2.355115 GTCGGGCTGGGGATTGTT 59.645 61.111 0.00 0.00 0.00 2.83
4062 5612 1.226547 CTTGAGACGCTCCGAGCTC 60.227 63.158 18.14 13.65 39.60 4.09
4087 5637 6.582636 TGACAGTCTGACTTGAAACATACTT 58.417 36.000 7.77 0.00 0.00 2.24
4088 5638 6.479990 TGACAGTCTGACTTGAAACATACTTG 59.520 38.462 7.77 0.00 0.00 3.16
4113 5663 7.595875 TGATTCAACATTGTAAAGATGCACTTG 59.404 33.333 0.00 0.00 38.98 3.16
4136 5692 1.205893 CAGGACTTAGAGGCTCACACC 59.794 57.143 18.26 11.91 0.00 4.16
4139 5695 1.153549 CTTAGAGGCTCACACCGGC 60.154 63.158 18.26 0.00 33.69 6.13
4140 5696 1.888436 CTTAGAGGCTCACACCGGCA 61.888 60.000 18.26 0.00 33.69 5.69
4141 5697 1.888436 TTAGAGGCTCACACCGGCAG 61.888 60.000 18.26 0.00 33.69 4.85
4145 5701 3.286751 GCTCACACCGGCAGCAAA 61.287 61.111 0.00 0.00 33.06 3.68
4147 5703 3.259425 CTCACACCGGCAGCAAAGC 62.259 63.158 0.00 0.00 0.00 3.51
4156 5712 3.604667 CAGCAAAGCCGTGGCCAA 61.605 61.111 7.24 0.00 43.17 4.52
4201 5760 2.039216 TCTTCCAGGGTTTGCATTCGTA 59.961 45.455 0.00 0.00 0.00 3.43
4269 5832 1.283613 TGAGTTGTGACAACAGGGGTT 59.716 47.619 27.89 8.22 37.67 4.11
4270 5833 1.947456 GAGTTGTGACAACAGGGGTTC 59.053 52.381 27.89 13.23 37.67 3.62
4271 5834 1.283613 AGTTGTGACAACAGGGGTTCA 59.716 47.619 27.89 0.00 37.67 3.18
4283 5918 6.044404 ACAACAGGGGTTCATAATATCTAGGG 59.956 42.308 0.00 0.00 34.21 3.53
4298 5933 2.665008 TAGGGACGAGCCATGCATGC 62.665 60.000 21.69 11.82 38.95 4.06
4299 5934 3.589881 GGACGAGCCATGCATGCC 61.590 66.667 21.69 10.87 36.34 4.40
4300 5935 2.515523 GACGAGCCATGCATGCCT 60.516 61.111 21.69 16.42 0.00 4.75
4301 5936 2.827190 ACGAGCCATGCATGCCTG 60.827 61.111 21.69 15.92 0.00 4.85
4319 5959 2.101249 CCTGAAACACACAAATGGCTGT 59.899 45.455 0.00 0.00 0.00 4.40
4322 5962 4.573900 TGAAACACACAAATGGCTGTTTT 58.426 34.783 10.30 1.05 37.05 2.43
4346 5991 8.690203 TTTTCCTCAACAGTTGATATTCTGAA 57.310 30.769 16.53 9.54 39.30 3.02
4366 6011 0.039256 TCGCAAATTGCTGCCTGAAC 60.039 50.000 16.42 0.00 42.25 3.18
4367 6012 1.010419 CGCAAATTGCTGCCTGAACC 61.010 55.000 16.42 0.00 42.25 3.62
4381 6026 3.665190 CCTGAACCAAGACTTGTCCTAC 58.335 50.000 14.03 2.23 0.00 3.18
4410 6055 2.274542 TGAACCAGCCTAATCCTCCAA 58.725 47.619 0.00 0.00 0.00 3.53
4411 6056 2.239654 TGAACCAGCCTAATCCTCCAAG 59.760 50.000 0.00 0.00 0.00 3.61
4412 6057 0.548510 ACCAGCCTAATCCTCCAAGC 59.451 55.000 0.00 0.00 0.00 4.01
4415 6060 2.295885 CAGCCTAATCCTCCAAGCAAG 58.704 52.381 0.00 0.00 0.00 4.01
4487 6136 3.011119 AGTCTTGAGTACAGAGGTAGCG 58.989 50.000 0.00 0.00 0.00 4.26
4646 6357 5.445845 CAATTGAAAAAGGCAATTCAGCAC 58.554 37.500 0.00 0.00 42.33 4.40
4854 9896 1.762460 TTCTCCCGCTGGATCTCCC 60.762 63.158 0.00 0.00 40.80 4.30
4881 9923 2.620251 TAGGTAGTGCATCATGGTGC 57.380 50.000 24.36 24.36 45.25 5.01
4937 9994 2.683742 CGGGGAAACTACCGGTACTAGA 60.684 54.545 11.16 0.00 46.08 2.43
4938 9995 2.954989 GGGGAAACTACCGGTACTAGAG 59.045 54.545 11.16 4.78 0.00 2.43
4939 9996 3.372025 GGGGAAACTACCGGTACTAGAGA 60.372 52.174 11.16 0.00 0.00 3.10
4940 9997 3.629855 GGGAAACTACCGGTACTAGAGAC 59.370 52.174 11.16 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.874374 ATAGAGCCCACCCCATAGTAT 57.126 47.619 0.00 0.00 0.00 2.12
6 7 3.648683 AATAGAGCCCACCCCATAGTA 57.351 47.619 0.00 0.00 0.00 1.82
7 8 2.514726 AATAGAGCCCACCCCATAGT 57.485 50.000 0.00 0.00 0.00 2.12
8 9 3.884037 AAAATAGAGCCCACCCCATAG 57.116 47.619 0.00 0.00 0.00 2.23
26 27 5.004255 CGTAAACCATCGACGTACAAAAA 57.996 39.130 0.00 0.00 0.00 1.94
27 28 4.627923 CGTAAACCATCGACGTACAAAA 57.372 40.909 0.00 0.00 0.00 2.44
34 35 1.689352 GCCCACGTAAACCATCGACG 61.689 60.000 0.00 0.00 42.22 5.12
35 36 1.689352 CGCCCACGTAAACCATCGAC 61.689 60.000 0.00 0.00 33.53 4.20
36 37 1.446445 CGCCCACGTAAACCATCGA 60.446 57.895 0.00 0.00 33.53 3.59
37 38 3.086309 CGCCCACGTAAACCATCG 58.914 61.111 0.00 0.00 33.53 3.84
38 39 2.789249 GCGCCCACGTAAACCATC 59.211 61.111 0.00 0.00 42.83 3.51
39 40 3.122323 CGCGCCCACGTAAACCAT 61.122 61.111 0.00 0.00 42.83 3.55
42 43 4.439472 CAGCGCGCCCACGTAAAC 62.439 66.667 30.33 0.00 42.83 2.01
57 58 2.521465 TTGGGCCAGTTGCACCAG 60.521 61.111 6.23 0.00 45.47 4.00
58 59 2.837291 GTTGGGCCAGTTGCACCA 60.837 61.111 6.23 0.00 45.47 4.17
59 60 2.837291 TGTTGGGCCAGTTGCACC 60.837 61.111 6.23 0.00 45.47 5.01
60 61 2.730094 CTGTTGGGCCAGTTGCAC 59.270 61.111 6.23 1.64 46.61 4.57
61 62 3.225798 GCTGTTGGGCCAGTTGCA 61.226 61.111 6.23 4.19 43.89 4.08
62 63 2.914097 AGCTGTTGGGCCAGTTGC 60.914 61.111 6.23 12.27 40.16 4.17
63 64 1.108727 TTCAGCTGTTGGGCCAGTTG 61.109 55.000 14.67 3.84 42.87 3.16
64 65 0.825010 CTTCAGCTGTTGGGCCAGTT 60.825 55.000 14.67 0.00 34.84 3.16
65 66 1.228367 CTTCAGCTGTTGGGCCAGT 60.228 57.895 14.67 0.00 34.84 4.00
66 67 2.633509 GCTTCAGCTGTTGGGCCAG 61.634 63.158 14.67 0.00 38.21 4.85
67 68 2.598394 GCTTCAGCTGTTGGGCCA 60.598 61.111 14.67 0.00 38.21 5.36
68 69 3.741476 CGCTTCAGCTGTTGGGCC 61.741 66.667 14.67 0.00 39.32 5.80
69 70 2.555547 AACGCTTCAGCTGTTGGGC 61.556 57.895 14.67 12.32 36.79 5.36
70 71 1.283793 CAACGCTTCAGCTGTTGGG 59.716 57.895 14.67 16.98 44.07 4.12
71 72 4.929198 CAACGCTTCAGCTGTTGG 57.071 55.556 14.67 6.31 44.07 3.77
72 73 1.370900 GCCAACGCTTCAGCTGTTG 60.371 57.895 14.67 20.30 45.60 3.33
73 74 2.555547 GGCCAACGCTTCAGCTGTT 61.556 57.895 14.67 0.00 37.92 3.16
74 75 2.980233 GGCCAACGCTTCAGCTGT 60.980 61.111 14.67 0.00 39.32 4.40
75 76 4.093952 CGGCCAACGCTTCAGCTG 62.094 66.667 7.63 7.63 39.32 4.24
76 77 4.314440 TCGGCCAACGCTTCAGCT 62.314 61.111 2.24 0.00 43.86 4.24
77 78 3.793144 CTCGGCCAACGCTTCAGC 61.793 66.667 2.24 0.00 43.86 4.26
78 79 3.121030 CCTCGGCCAACGCTTCAG 61.121 66.667 2.24 0.00 43.86 3.02
89 90 1.335145 TAACTATACTGGGCCTCGGC 58.665 55.000 4.53 0.00 41.06 5.54
90 91 4.618920 AATTAACTATACTGGGCCTCGG 57.381 45.455 4.53 0.00 0.00 4.63
91 92 5.924825 GTGTAATTAACTATACTGGGCCTCG 59.075 44.000 4.53 0.00 0.00 4.63
92 93 5.924825 CGTGTAATTAACTATACTGGGCCTC 59.075 44.000 4.53 0.00 0.00 4.70
93 94 5.364735 ACGTGTAATTAACTATACTGGGCCT 59.635 40.000 4.53 0.00 0.00 5.19
94 95 5.464389 CACGTGTAATTAACTATACTGGGCC 59.536 44.000 7.58 0.00 0.00 5.80
95 96 5.050567 GCACGTGTAATTAACTATACTGGGC 60.051 44.000 18.38 0.00 0.00 5.36
96 97 5.174398 CGCACGTGTAATTAACTATACTGGG 59.826 44.000 18.38 0.00 0.00 4.45
97 98 5.972973 TCGCACGTGTAATTAACTATACTGG 59.027 40.000 18.38 0.00 0.00 4.00
98 99 6.908820 TCTCGCACGTGTAATTAACTATACTG 59.091 38.462 18.38 0.00 0.00 2.74
99 100 7.019774 TCTCGCACGTGTAATTAACTATACT 57.980 36.000 18.38 0.00 0.00 2.12
100 101 6.129509 GCTCTCGCACGTGTAATTAACTATAC 60.130 42.308 18.38 0.00 35.78 1.47
101 102 5.911280 GCTCTCGCACGTGTAATTAACTATA 59.089 40.000 18.38 0.00 35.78 1.31
102 103 4.738740 GCTCTCGCACGTGTAATTAACTAT 59.261 41.667 18.38 0.00 35.78 2.12
103 104 4.100529 GCTCTCGCACGTGTAATTAACTA 58.899 43.478 18.38 0.00 35.78 2.24
104 105 2.921754 GCTCTCGCACGTGTAATTAACT 59.078 45.455 18.38 0.00 35.78 2.24
105 106 2.921754 AGCTCTCGCACGTGTAATTAAC 59.078 45.455 18.38 2.01 39.10 2.01
106 107 3.226346 AGCTCTCGCACGTGTAATTAA 57.774 42.857 18.38 0.00 39.10 1.40
107 108 2.933495 AGCTCTCGCACGTGTAATTA 57.067 45.000 18.38 0.00 39.10 1.40
108 109 2.080286 AAGCTCTCGCACGTGTAATT 57.920 45.000 18.38 0.26 39.10 1.40
109 110 2.933495 TAAGCTCTCGCACGTGTAAT 57.067 45.000 18.38 0.00 39.10 1.89
110 111 2.933495 ATAAGCTCTCGCACGTGTAA 57.067 45.000 18.38 4.58 39.10 2.41
111 112 4.992951 TCTATATAAGCTCTCGCACGTGTA 59.007 41.667 18.38 4.95 39.10 2.90
112 113 3.813724 TCTATATAAGCTCTCGCACGTGT 59.186 43.478 18.38 0.00 39.10 4.49
113 114 4.406001 TCTATATAAGCTCTCGCACGTG 57.594 45.455 12.28 12.28 39.10 4.49
114 115 5.434352 TTTCTATATAAGCTCTCGCACGT 57.566 39.130 0.00 0.00 39.10 4.49
115 116 9.885934 ATATATTTCTATATAAGCTCTCGCACG 57.114 33.333 0.00 0.00 33.92 5.34
131 132 9.529325 CCAAAGTCGAGTTGTCATATATTTCTA 57.471 33.333 6.19 0.00 0.00 2.10
132 133 8.041323 ACCAAAGTCGAGTTGTCATATATTTCT 58.959 33.333 6.19 0.00 0.00 2.52
133 134 8.197988 ACCAAAGTCGAGTTGTCATATATTTC 57.802 34.615 6.19 0.00 0.00 2.17
134 135 7.822334 TGACCAAAGTCGAGTTGTCATATATTT 59.178 33.333 17.61 0.00 46.74 1.40
135 136 7.277981 GTGACCAAAGTCGAGTTGTCATATATT 59.722 37.037 21.99 0.00 46.74 1.28
136 137 6.757010 GTGACCAAAGTCGAGTTGTCATATAT 59.243 38.462 21.99 0.00 46.74 0.86
137 138 6.097356 GTGACCAAAGTCGAGTTGTCATATA 58.903 40.000 21.99 4.16 46.74 0.86
138 139 4.929808 GTGACCAAAGTCGAGTTGTCATAT 59.070 41.667 21.99 0.00 46.74 1.78
139 140 4.202172 TGTGACCAAAGTCGAGTTGTCATA 60.202 41.667 21.99 18.36 46.74 2.15
140 141 3.131396 GTGACCAAAGTCGAGTTGTCAT 58.869 45.455 21.99 4.71 46.74 3.06
141 142 2.093921 TGTGACCAAAGTCGAGTTGTCA 60.094 45.455 17.61 17.61 46.74 3.58
142 143 2.546778 TGTGACCAAAGTCGAGTTGTC 58.453 47.619 6.19 10.91 46.74 3.18
143 144 2.676342 GTTGTGACCAAAGTCGAGTTGT 59.324 45.455 6.19 0.56 46.74 3.32
144 145 2.675844 TGTTGTGACCAAAGTCGAGTTG 59.324 45.455 6.19 4.01 46.74 3.16
145 146 2.980568 TGTTGTGACCAAAGTCGAGTT 58.019 42.857 0.00 0.00 46.74 3.01
146 147 2.684001 TGTTGTGACCAAAGTCGAGT 57.316 45.000 0.00 0.00 46.74 4.18
147 148 4.552166 AATTGTTGTGACCAAAGTCGAG 57.448 40.909 0.00 0.00 46.74 4.04
148 149 4.024387 GCTAATTGTTGTGACCAAAGTCGA 60.024 41.667 0.00 0.00 46.74 4.20
149 150 4.219033 GCTAATTGTTGTGACCAAAGTCG 58.781 43.478 0.00 0.00 46.74 4.18
150 151 4.546570 GGCTAATTGTTGTGACCAAAGTC 58.453 43.478 0.00 0.00 43.83 3.01
151 152 3.004315 CGGCTAATTGTTGTGACCAAAGT 59.996 43.478 0.00 0.00 30.94 2.66
152 153 3.004315 ACGGCTAATTGTTGTGACCAAAG 59.996 43.478 0.00 0.00 30.94 2.77
153 154 2.952978 ACGGCTAATTGTTGTGACCAAA 59.047 40.909 0.00 0.00 30.94 3.28
154 155 2.550606 GACGGCTAATTGTTGTGACCAA 59.449 45.455 0.00 0.00 0.00 3.67
155 156 2.147958 GACGGCTAATTGTTGTGACCA 58.852 47.619 0.00 0.00 0.00 4.02
156 157 2.095919 GTGACGGCTAATTGTTGTGACC 60.096 50.000 0.00 0.00 0.00 4.02
157 158 2.546368 TGTGACGGCTAATTGTTGTGAC 59.454 45.455 0.00 0.00 0.00 3.67
158 159 2.839975 TGTGACGGCTAATTGTTGTGA 58.160 42.857 0.00 0.00 0.00 3.58
159 160 3.829886 ATGTGACGGCTAATTGTTGTG 57.170 42.857 0.00 0.00 0.00 3.33
160 161 4.545610 CAAATGTGACGGCTAATTGTTGT 58.454 39.130 0.00 0.00 0.00 3.32
161 162 3.919804 CCAAATGTGACGGCTAATTGTTG 59.080 43.478 0.00 0.00 0.00 3.33
162 163 3.572255 ACCAAATGTGACGGCTAATTGTT 59.428 39.130 0.00 0.00 0.00 2.83
163 164 3.153919 ACCAAATGTGACGGCTAATTGT 58.846 40.909 0.00 0.00 0.00 2.71
164 165 3.190327 TGACCAAATGTGACGGCTAATTG 59.810 43.478 0.00 0.00 0.00 2.32
165 166 3.417101 TGACCAAATGTGACGGCTAATT 58.583 40.909 0.00 0.00 0.00 1.40
166 167 3.066291 TGACCAAATGTGACGGCTAAT 57.934 42.857 0.00 0.00 0.00 1.73
167 168 2.552599 TGACCAAATGTGACGGCTAA 57.447 45.000 0.00 0.00 0.00 3.09
168 169 2.746904 CAATGACCAAATGTGACGGCTA 59.253 45.455 0.00 0.00 0.00 3.93
169 170 1.541147 CAATGACCAAATGTGACGGCT 59.459 47.619 0.00 0.00 0.00 5.52
170 171 1.981254 CAATGACCAAATGTGACGGC 58.019 50.000 0.00 0.00 0.00 5.68
171 172 1.728825 CGCAATGACCAAATGTGACGG 60.729 52.381 0.00 0.00 0.00 4.79
172 173 1.069296 ACGCAATGACCAAATGTGACG 60.069 47.619 6.69 0.00 0.00 4.35
173 174 2.704725 ACGCAATGACCAAATGTGAC 57.295 45.000 6.69 0.00 0.00 3.67
174 175 2.861750 GCAACGCAATGACCAAATGTGA 60.862 45.455 6.69 0.00 0.00 3.58
175 176 1.456544 GCAACGCAATGACCAAATGTG 59.543 47.619 0.00 0.00 0.00 3.21
176 177 1.782044 GCAACGCAATGACCAAATGT 58.218 45.000 0.00 0.00 0.00 2.71
177 178 0.709467 CGCAACGCAATGACCAAATG 59.291 50.000 0.00 0.00 0.00 2.32
178 179 3.105514 CGCAACGCAATGACCAAAT 57.894 47.368 0.00 0.00 0.00 2.32
179 180 4.624293 CGCAACGCAATGACCAAA 57.376 50.000 0.00 0.00 0.00 3.28
190 191 3.307505 TTGCATCGAAGGCGCAACG 62.308 57.895 10.83 11.83 39.40 4.10
191 192 1.512734 CTTGCATCGAAGGCGCAAC 60.513 57.895 10.83 0.00 39.40 4.17
192 193 1.233950 TTCTTGCATCGAAGGCGCAA 61.234 50.000 10.83 12.42 41.31 4.85
193 194 1.233950 TTTCTTGCATCGAAGGCGCA 61.234 50.000 10.83 3.42 37.46 6.09
194 195 0.109781 TTTTCTTGCATCGAAGGCGC 60.110 50.000 0.00 0.00 37.46 6.53
195 196 2.245096 CTTTTTCTTGCATCGAAGGCG 58.755 47.619 7.77 0.00 39.35 5.52
196 197 2.029918 ACCTTTTTCTTGCATCGAAGGC 60.030 45.455 12.16 5.56 37.70 4.35
197 198 3.503748 AGACCTTTTTCTTGCATCGAAGG 59.496 43.478 11.17 11.17 39.55 3.46
198 199 4.378874 GGAGACCTTTTTCTTGCATCGAAG 60.379 45.833 0.00 0.00 0.00 3.79
199 200 3.502211 GGAGACCTTTTTCTTGCATCGAA 59.498 43.478 0.00 0.00 0.00 3.71
200 201 3.074412 GGAGACCTTTTTCTTGCATCGA 58.926 45.455 0.00 0.00 0.00 3.59
201 202 2.159653 CGGAGACCTTTTTCTTGCATCG 60.160 50.000 0.00 0.00 0.00 3.84
202 203 2.162408 CCGGAGACCTTTTTCTTGCATC 59.838 50.000 0.00 0.00 0.00 3.91
203 204 2.162681 CCGGAGACCTTTTTCTTGCAT 58.837 47.619 0.00 0.00 0.00 3.96
204 205 1.133915 ACCGGAGACCTTTTTCTTGCA 60.134 47.619 9.46 0.00 0.00 4.08
205 206 1.605753 ACCGGAGACCTTTTTCTTGC 58.394 50.000 9.46 0.00 0.00 4.01
206 207 3.630312 TCAAACCGGAGACCTTTTTCTTG 59.370 43.478 9.46 0.00 0.00 3.02
207 208 3.893521 TCAAACCGGAGACCTTTTTCTT 58.106 40.909 9.46 0.00 0.00 2.52
208 209 3.570912 TCAAACCGGAGACCTTTTTCT 57.429 42.857 9.46 0.00 0.00 2.52
209 210 4.321008 GGATTCAAACCGGAGACCTTTTTC 60.321 45.833 9.46 0.00 0.00 2.29
210 211 3.572682 GGATTCAAACCGGAGACCTTTTT 59.427 43.478 9.46 0.00 0.00 1.94
211 212 3.154710 GGATTCAAACCGGAGACCTTTT 58.845 45.455 9.46 0.00 0.00 2.27
212 213 2.554564 GGGATTCAAACCGGAGACCTTT 60.555 50.000 9.46 0.00 0.00 3.11
213 214 1.004394 GGGATTCAAACCGGAGACCTT 59.996 52.381 9.46 0.00 0.00 3.50
214 215 0.618981 GGGATTCAAACCGGAGACCT 59.381 55.000 9.46 0.00 0.00 3.85
215 216 0.743345 CGGGATTCAAACCGGAGACC 60.743 60.000 9.46 1.45 46.08 3.85
216 217 2.763651 CGGGATTCAAACCGGAGAC 58.236 57.895 9.46 0.00 46.08 3.36
222 223 3.822192 GCGCCCGGGATTCAAACC 61.822 66.667 29.31 1.69 0.00 3.27
223 224 3.059386 TGCGCCCGGGATTCAAAC 61.059 61.111 29.31 2.60 0.00 2.93
224 225 3.059386 GTGCGCCCGGGATTCAAA 61.059 61.111 29.31 0.00 0.00 2.69
225 226 3.731726 TATTGTGCGCCCGGGATTCAA 62.732 52.381 29.31 22.05 0.00 2.69
226 227 2.258748 TATTGTGCGCCCGGGATTCA 62.259 55.000 29.31 15.57 0.00 2.57
227 228 0.889186 ATATTGTGCGCCCGGGATTC 60.889 55.000 29.31 12.74 0.00 2.52
228 229 0.467290 AATATTGTGCGCCCGGGATT 60.467 50.000 29.31 9.61 0.00 3.01
229 230 0.467290 AAATATTGTGCGCCCGGGAT 60.467 50.000 29.31 10.44 0.00 3.85
230 231 0.681564 AAAATATTGTGCGCCCGGGA 60.682 50.000 29.31 0.71 0.00 5.14
231 232 0.174617 AAAAATATTGTGCGCCCGGG 59.825 50.000 19.09 19.09 0.00 5.73
232 233 3.731295 AAAAATATTGTGCGCCCGG 57.269 47.368 4.18 0.00 0.00 5.73
276 277 9.771534 GCAGTTTTCCTCACTCTTTATATCTAT 57.228 33.333 0.00 0.00 0.00 1.98
277 278 8.982723 AGCAGTTTTCCTCACTCTTTATATCTA 58.017 33.333 0.00 0.00 0.00 1.98
278 279 7.856415 AGCAGTTTTCCTCACTCTTTATATCT 58.144 34.615 0.00 0.00 0.00 1.98
279 280 8.499403 AAGCAGTTTTCCTCACTCTTTATATC 57.501 34.615 0.00 0.00 0.00 1.63
280 281 7.278868 CGAAGCAGTTTTCCTCACTCTTTATAT 59.721 37.037 0.00 0.00 0.00 0.86
281 282 6.590292 CGAAGCAGTTTTCCTCACTCTTTATA 59.410 38.462 0.00 0.00 0.00 0.98
282 283 5.409826 CGAAGCAGTTTTCCTCACTCTTTAT 59.590 40.000 0.00 0.00 0.00 1.40
283 284 4.750098 CGAAGCAGTTTTCCTCACTCTTTA 59.250 41.667 0.00 0.00 0.00 1.85
284 285 3.561725 CGAAGCAGTTTTCCTCACTCTTT 59.438 43.478 0.00 0.00 0.00 2.52
285 286 3.134458 CGAAGCAGTTTTCCTCACTCTT 58.866 45.455 0.00 0.00 0.00 2.85
286 287 2.365617 TCGAAGCAGTTTTCCTCACTCT 59.634 45.455 0.00 0.00 0.00 3.24
287 288 2.734079 CTCGAAGCAGTTTTCCTCACTC 59.266 50.000 0.00 0.00 0.00 3.51
288 289 2.365617 TCTCGAAGCAGTTTTCCTCACT 59.634 45.455 0.00 0.00 0.00 3.41
289 290 2.734079 CTCTCGAAGCAGTTTTCCTCAC 59.266 50.000 0.00 0.00 0.00 3.51
290 291 2.628178 TCTCTCGAAGCAGTTTTCCTCA 59.372 45.455 0.00 0.00 0.00 3.86
291 292 3.249917 CTCTCTCGAAGCAGTTTTCCTC 58.750 50.000 0.00 0.00 0.00 3.71
292 293 2.630580 ACTCTCTCGAAGCAGTTTTCCT 59.369 45.455 0.00 0.00 0.00 3.36
293 294 3.033368 ACTCTCTCGAAGCAGTTTTCC 57.967 47.619 0.00 0.00 0.00 3.13
294 295 7.702772 TGATATTACTCTCTCGAAGCAGTTTTC 59.297 37.037 0.00 0.00 0.00 2.29
295 296 7.489757 GTGATATTACTCTCTCGAAGCAGTTTT 59.510 37.037 0.00 0.00 0.00 2.43
296 297 6.975772 GTGATATTACTCTCTCGAAGCAGTTT 59.024 38.462 0.00 0.00 0.00 2.66
297 298 6.320164 AGTGATATTACTCTCTCGAAGCAGTT 59.680 38.462 0.00 0.00 0.00 3.16
298 299 5.825679 AGTGATATTACTCTCTCGAAGCAGT 59.174 40.000 0.00 0.00 0.00 4.40
299 300 6.312399 AGTGATATTACTCTCTCGAAGCAG 57.688 41.667 0.00 0.00 0.00 4.24
300 301 6.238786 GGAAGTGATATTACTCTCTCGAAGCA 60.239 42.308 0.00 0.00 0.00 3.91
301 302 6.146898 GGAAGTGATATTACTCTCTCGAAGC 58.853 44.000 0.00 0.00 0.00 3.86
302 303 6.566942 CGGGAAGTGATATTACTCTCTCGAAG 60.567 46.154 18.56 0.00 35.57 3.79
303 304 5.238868 CGGGAAGTGATATTACTCTCTCGAA 59.761 44.000 18.56 0.00 35.57 3.71
304 305 4.755629 CGGGAAGTGATATTACTCTCTCGA 59.244 45.833 18.56 0.00 35.57 4.04
305 306 4.755629 TCGGGAAGTGATATTACTCTCTCG 59.244 45.833 17.85 17.85 35.23 4.04
306 307 6.636562 TTCGGGAAGTGATATTACTCTCTC 57.363 41.667 0.00 1.13 0.00 3.20
307 308 7.342284 TCTTTTCGGGAAGTGATATTACTCTCT 59.658 37.037 0.00 0.00 0.00 3.10
308 309 7.490000 TCTTTTCGGGAAGTGATATTACTCTC 58.510 38.462 0.00 1.84 0.00 3.20
309 310 7.342284 TCTCTTTTCGGGAAGTGATATTACTCT 59.658 37.037 0.00 0.00 0.00 3.24
310 311 7.490000 TCTCTTTTCGGGAAGTGATATTACTC 58.510 38.462 0.00 0.00 0.00 2.59
311 312 7.342284 TCTCTCTTTTCGGGAAGTGATATTACT 59.658 37.037 0.00 0.00 31.17 2.24
312 313 7.490000 TCTCTCTTTTCGGGAAGTGATATTAC 58.510 38.462 0.00 0.00 31.17 1.89
313 314 7.560262 TCTCTCTCTTTTCGGGAAGTGATATTA 59.440 37.037 4.67 0.00 31.17 0.98
314 315 6.381420 TCTCTCTCTTTTCGGGAAGTGATATT 59.619 38.462 4.67 0.00 31.17 1.28
315 316 5.894393 TCTCTCTCTTTTCGGGAAGTGATAT 59.106 40.000 4.67 0.00 31.17 1.63
316 317 5.262009 TCTCTCTCTTTTCGGGAAGTGATA 58.738 41.667 4.67 0.00 31.17 2.15
317 318 4.090090 TCTCTCTCTTTTCGGGAAGTGAT 58.910 43.478 4.67 0.00 31.17 3.06
318 319 3.497332 TCTCTCTCTTTTCGGGAAGTGA 58.503 45.455 4.32 4.32 0.00 3.41
319 320 3.508012 TCTCTCTCTCTTTTCGGGAAGTG 59.492 47.826 0.00 0.00 0.00 3.16
320 321 3.761752 CTCTCTCTCTCTTTTCGGGAAGT 59.238 47.826 0.00 0.00 0.00 3.01
321 322 4.013728 TCTCTCTCTCTCTTTTCGGGAAG 58.986 47.826 0.00 0.00 0.00 3.46
322 323 4.013728 CTCTCTCTCTCTCTTTTCGGGAA 58.986 47.826 0.00 0.00 0.00 3.97
323 324 3.009695 ACTCTCTCTCTCTCTTTTCGGGA 59.990 47.826 0.00 0.00 0.00 5.14
324 325 3.352648 ACTCTCTCTCTCTCTTTTCGGG 58.647 50.000 0.00 0.00 0.00 5.14
325 326 6.693315 ATTACTCTCTCTCTCTCTTTTCGG 57.307 41.667 0.00 0.00 0.00 4.30
326 327 9.051679 TGATATTACTCTCTCTCTCTCTTTTCG 57.948 37.037 0.00 0.00 0.00 3.46
328 329 9.693739 TGTGATATTACTCTCTCTCTCTCTTTT 57.306 33.333 0.00 0.00 0.00 2.27
329 330 9.866655 ATGTGATATTACTCTCTCTCTCTCTTT 57.133 33.333 0.00 0.00 0.00 2.52
330 331 9.507329 GATGTGATATTACTCTCTCTCTCTCTT 57.493 37.037 0.00 0.00 0.00 2.85
331 332 8.103305 GGATGTGATATTACTCTCTCTCTCTCT 58.897 40.741 0.00 0.00 0.00 3.10
332 333 7.064609 CGGATGTGATATTACTCTCTCTCTCTC 59.935 44.444 0.00 0.00 0.00 3.20
333 334 6.878923 CGGATGTGATATTACTCTCTCTCTCT 59.121 42.308 0.00 0.00 0.00 3.10
334 335 6.093495 CCGGATGTGATATTACTCTCTCTCTC 59.907 46.154 0.00 0.00 0.00 3.20
335 336 5.943416 CCGGATGTGATATTACTCTCTCTCT 59.057 44.000 0.00 0.00 0.00 3.10
336 337 5.708230 ACCGGATGTGATATTACTCTCTCTC 59.292 44.000 9.46 0.00 0.00 3.20
337 338 5.636123 ACCGGATGTGATATTACTCTCTCT 58.364 41.667 9.46 0.00 0.00 3.10
338 339 5.968528 ACCGGATGTGATATTACTCTCTC 57.031 43.478 9.46 0.00 0.00 3.20
481 484 3.636231 CCGGAAGCTGTGGGGTCA 61.636 66.667 0.00 0.00 0.00 4.02
538 541 3.866582 GAGCTGGTCCGGATGGGG 61.867 72.222 7.81 0.00 36.01 4.96
857 886 4.796495 CAGGGGGCGGCTGGTAAC 62.796 72.222 9.56 0.00 0.00 2.50
872 901 5.791367 TCAATCTTCAGAATCGAAAGCAG 57.209 39.130 0.00 0.00 0.00 4.24
1063 1107 2.202756 GCTTACCTCGGCCGTGAG 60.203 66.667 27.84 17.53 35.70 3.51
1103 1147 3.768878 ACGGTTCCTCCTCCTGATATAG 58.231 50.000 0.00 0.00 0.00 1.31
1104 1148 3.895656 CAACGGTTCCTCCTCCTGATATA 59.104 47.826 0.00 0.00 0.00 0.86
1105 1149 2.700897 CAACGGTTCCTCCTCCTGATAT 59.299 50.000 0.00 0.00 0.00 1.63
1162 1571 5.355071 GTCATCATACAAAACCTGATGCTGA 59.645 40.000 6.84 0.00 43.74 4.26
1163 1572 5.124297 TGTCATCATACAAAACCTGATGCTG 59.876 40.000 6.84 0.00 43.74 4.41
1164 1573 5.255687 TGTCATCATACAAAACCTGATGCT 58.744 37.500 6.84 0.00 43.74 3.79
1165 1574 5.565592 TGTCATCATACAAAACCTGATGC 57.434 39.130 6.84 4.00 43.74 3.91
1166 1575 9.112725 TCTAATGTCATCATACAAAACCTGATG 57.887 33.333 5.60 5.60 44.85 3.07
1167 1576 9.334947 CTCTAATGTCATCATACAAAACCTGAT 57.665 33.333 0.00 0.00 33.49 2.90
1279 1688 0.112995 TGGCCATGCTTGTTTCCTCT 59.887 50.000 0.00 0.00 0.00 3.69
1324 1733 1.280982 CCGATGAGTTGGACATGACG 58.719 55.000 0.00 0.00 0.00 4.35
1393 1802 9.886132 AATACTACTTCACTAATTTGGTACTGG 57.114 33.333 0.00 0.00 0.00 4.00
1404 1945 9.991906 AACTAGCAACAAATACTACTTCACTAA 57.008 29.630 0.00 0.00 0.00 2.24
1405 1946 9.991906 AAACTAGCAACAAATACTACTTCACTA 57.008 29.630 0.00 0.00 0.00 2.74
1406 1947 8.904099 AAACTAGCAACAAATACTACTTCACT 57.096 30.769 0.00 0.00 0.00 3.41
1410 1951 9.788889 AGGTAAAACTAGCAACAAATACTACTT 57.211 29.630 0.00 0.00 0.00 2.24
1411 1952 9.788889 AAGGTAAAACTAGCAACAAATACTACT 57.211 29.630 0.00 0.00 0.00 2.57
1413 1954 9.781633 TGAAGGTAAAACTAGCAACAAATACTA 57.218 29.630 0.00 0.00 0.00 1.82
1414 1955 8.685838 TGAAGGTAAAACTAGCAACAAATACT 57.314 30.769 0.00 0.00 0.00 2.12
1415 1956 8.565416 ACTGAAGGTAAAACTAGCAACAAATAC 58.435 33.333 0.00 0.00 0.00 1.89
1416 1957 8.685838 ACTGAAGGTAAAACTAGCAACAAATA 57.314 30.769 0.00 0.00 0.00 1.40
1417 1958 7.582667 ACTGAAGGTAAAACTAGCAACAAAT 57.417 32.000 0.00 0.00 0.00 2.32
1418 1959 7.254522 CGTACTGAAGGTAAAACTAGCAACAAA 60.255 37.037 0.00 0.00 31.56 2.83
1419 1960 6.201425 CGTACTGAAGGTAAAACTAGCAACAA 59.799 38.462 0.00 0.00 31.56 2.83
1420 1961 5.693104 CGTACTGAAGGTAAAACTAGCAACA 59.307 40.000 0.00 0.00 31.56 3.33
1421 1962 5.922544 TCGTACTGAAGGTAAAACTAGCAAC 59.077 40.000 0.00 0.00 31.56 4.17
1422 1963 6.088016 TCGTACTGAAGGTAAAACTAGCAA 57.912 37.500 0.00 0.00 31.56 3.91
1423 1964 5.710513 TCGTACTGAAGGTAAAACTAGCA 57.289 39.130 0.00 0.00 31.56 3.49
1424 1965 5.922544 TGTTCGTACTGAAGGTAAAACTAGC 59.077 40.000 0.00 0.00 37.23 3.42
1425 1966 8.530269 AATGTTCGTACTGAAGGTAAAACTAG 57.470 34.615 1.24 0.00 37.23 2.57
1427 1968 9.498176 AATAATGTTCGTACTGAAGGTAAAACT 57.502 29.630 1.24 0.00 37.23 2.66
1452 1993 7.844009 ACCGATCACTGGATAAAACTAACTAA 58.156 34.615 0.00 0.00 32.67 2.24
1455 1998 6.370718 ACAACCGATCACTGGATAAAACTAAC 59.629 38.462 0.00 0.00 32.67 2.34
1480 2023 1.277273 CTTGCTCTCACCCATCACTGA 59.723 52.381 0.00 0.00 0.00 3.41
1482 2025 1.356124 ACTTGCTCTCACCCATCACT 58.644 50.000 0.00 0.00 0.00 3.41
1483 2026 2.079925 GAACTTGCTCTCACCCATCAC 58.920 52.381 0.00 0.00 0.00 3.06
1496 2075 6.246420 ACAGTCATGATAAACTGAACTTGC 57.754 37.500 16.71 0.00 44.54 4.01
1557 2203 6.604795 GTCAAATCCCCTATGAATGATATGGG 59.395 42.308 0.00 0.00 41.70 4.00
1558 2204 7.177184 TGTCAAATCCCCTATGAATGATATGG 58.823 38.462 0.00 0.00 0.00 2.74
1559 2205 8.640063 TTGTCAAATCCCCTATGAATGATATG 57.360 34.615 0.00 0.00 0.00 1.78
1560 2206 9.659135 TTTTGTCAAATCCCCTATGAATGATAT 57.341 29.630 0.00 0.00 0.00 1.63
1561 2207 8.912988 GTTTTGTCAAATCCCCTATGAATGATA 58.087 33.333 0.00 0.00 0.00 2.15
1562 2208 7.399765 TGTTTTGTCAAATCCCCTATGAATGAT 59.600 33.333 0.00 0.00 0.00 2.45
1563 2209 6.723515 TGTTTTGTCAAATCCCCTATGAATGA 59.276 34.615 0.00 0.00 0.00 2.57
1564 2210 6.934056 TGTTTTGTCAAATCCCCTATGAATG 58.066 36.000 0.00 0.00 0.00 2.67
1565 2211 7.180766 ACATGTTTTGTCAAATCCCCTATGAAT 59.819 33.333 0.00 0.00 30.89 2.57
1566 2212 6.496565 ACATGTTTTGTCAAATCCCCTATGAA 59.503 34.615 0.00 0.00 30.89 2.57
1581 2227 5.763204 AGTTCGAATGGACTACATGTTTTGT 59.237 36.000 2.30 0.60 40.44 2.83
1582 2228 6.073276 TCAGTTCGAATGGACTACATGTTTTG 60.073 38.462 2.30 0.00 40.44 2.44
1583 2229 5.995282 TCAGTTCGAATGGACTACATGTTTT 59.005 36.000 2.30 0.00 40.44 2.43
1584 2230 5.547465 TCAGTTCGAATGGACTACATGTTT 58.453 37.500 2.30 0.00 40.44 2.83
1585 2231 5.147330 TCAGTTCGAATGGACTACATGTT 57.853 39.130 2.30 0.00 40.44 2.71
1586 2232 4.382040 CCTCAGTTCGAATGGACTACATGT 60.382 45.833 2.69 2.69 40.44 3.21
1605 2328 5.244851 GCTTACTCATCATGATCTACCCTCA 59.755 44.000 4.86 0.00 0.00 3.86
1733 2506 7.251321 AGGAAAATCACAGAGACAAGATACT 57.749 36.000 0.00 0.00 0.00 2.12
1806 2641 3.643159 GTGACTTCACCATTTTCCACC 57.357 47.619 0.00 0.00 40.85 4.61
1993 2884 8.455682 CGGTCTTTAAAATTGGAATAAGTAGCA 58.544 33.333 0.00 0.00 0.00 3.49
2004 2895 3.194542 TCATGGGCGGTCTTTAAAATTGG 59.805 43.478 0.00 0.00 0.00 3.16
2012 2903 0.396139 ATGCATCATGGGCGGTCTTT 60.396 50.000 0.00 0.00 0.00 2.52
2019 2910 1.689813 TGAATGGAATGCATCATGGGC 59.310 47.619 0.00 3.66 0.00 5.36
2054 2945 7.147479 ACCCAAAATATGACATCAGCTAGTAGT 60.147 37.037 0.00 0.00 0.00 2.73
2055 2946 7.220030 ACCCAAAATATGACATCAGCTAGTAG 58.780 38.462 0.00 0.00 0.00 2.57
2056 2947 7.136822 ACCCAAAATATGACATCAGCTAGTA 57.863 36.000 0.00 0.00 0.00 1.82
2087 2997 1.815421 GAATGCGTGCGGACCTGAT 60.815 57.895 0.00 0.00 0.00 2.90
2135 3045 7.782168 TCAGATATGATAGTTGACAGAGAAGGT 59.218 37.037 0.00 0.00 0.00 3.50
2157 3067 5.477984 AGCAATTTGACCTGCTATTTTCAGA 59.522 36.000 0.00 0.00 46.92 3.27
2244 3165 2.173782 TGGAACACTGCAAAGGGTAAGA 59.826 45.455 0.00 0.00 0.00 2.10
2576 3509 3.446873 TGTCAAAATGTTGGTGCTTCAGT 59.553 39.130 0.00 0.00 35.29 3.41
2745 3705 6.753180 TGCTTTTGTTTGCAACAGGAATATA 58.247 32.000 0.00 0.00 43.27 0.86
2787 3747 5.408880 AGAAAGGTACTCCTCTTTACTGC 57.591 43.478 0.00 0.00 44.35 4.40
2798 3758 9.953697 CTTAGACATGTACATAGAAAGGTACTC 57.046 37.037 8.32 0.00 42.12 2.59
2879 3846 3.512516 GGAGATGCTTGCGTGGGC 61.513 66.667 0.00 0.00 40.52 5.36
2922 3900 3.325716 TGTGTAGTAACCTCCCTTGGTTC 59.674 47.826 1.93 0.00 46.37 3.62
3006 4241 3.207265 ACCATAGCATTTGCCGTATCA 57.793 42.857 0.00 0.00 43.38 2.15
3010 4245 1.745087 CTGAACCATAGCATTTGCCGT 59.255 47.619 0.00 0.00 43.38 5.68
3011 4246 2.016318 TCTGAACCATAGCATTTGCCG 58.984 47.619 0.00 0.00 43.38 5.69
3195 4431 1.408969 GGGTGTTTGCTTCCCTTCAA 58.591 50.000 0.00 0.00 38.29 2.69
3223 4465 1.154654 GAAAGAGAACGCGTTGCCG 60.155 57.895 31.89 0.00 37.07 5.69
3232 4474 9.573133 TTTCTGTCTTCAATTTTGAAAGAGAAC 57.427 29.630 17.23 9.21 45.61 3.01
3314 4556 5.192927 ACACTTCATCAACAAAACCAGAGA 58.807 37.500 0.00 0.00 0.00 3.10
3377 4642 3.072944 CTCTCTGAAACTGCAGAAAGGG 58.927 50.000 23.35 11.61 43.75 3.95
3399 4664 1.881973 GCAGACACAAGCTCATCCAAA 59.118 47.619 0.00 0.00 0.00 3.28
3537 4910 6.115448 AGATACAGAAGTACAAGCTTTGGT 57.885 37.500 0.00 0.00 31.96 3.67
3539 4912 8.559536 TGAAAAGATACAGAAGTACAAGCTTTG 58.440 33.333 0.00 0.00 31.96 2.77
3551 4959 6.126863 AGTGGGATGTGAAAAGATACAGAA 57.873 37.500 0.00 0.00 0.00 3.02
3553 4961 5.939883 TCAAGTGGGATGTGAAAAGATACAG 59.060 40.000 0.00 0.00 0.00 2.74
3559 4967 9.492973 AAATAATTTCAAGTGGGATGTGAAAAG 57.507 29.630 2.52 0.00 42.70 2.27
3570 4992 9.277565 CATACTGTTCGAAATAATTTCAAGTGG 57.722 33.333 0.00 0.00 39.63 4.00
3631 5133 1.374125 CGCAACGAGGTCACCATCA 60.374 57.895 0.00 0.00 0.00 3.07
3664 5166 0.471617 CCTTCCATCCGGCTGATCTT 59.528 55.000 6.92 0.00 0.00 2.40
3757 5280 7.859377 ACGATGAATGCATTAAAAATGCTCTAG 59.141 33.333 21.43 11.42 44.79 2.43
3759 5282 6.567050 ACGATGAATGCATTAAAAATGCTCT 58.433 32.000 21.43 11.05 44.79 4.09
3760 5283 6.344468 CGACGATGAATGCATTAAAAATGCTC 60.344 38.462 21.43 13.88 44.79 4.26
3761 5284 5.456497 CGACGATGAATGCATTAAAAATGCT 59.544 36.000 21.43 6.20 44.79 3.79
3762 5285 5.229887 ACGACGATGAATGCATTAAAAATGC 59.770 36.000 12.97 15.88 44.76 3.56
3763 5286 6.688385 AGACGACGATGAATGCATTAAAAATG 59.312 34.615 12.97 3.30 34.11 2.32
3765 5288 6.176975 AGACGACGATGAATGCATTAAAAA 57.823 33.333 12.97 0.00 34.11 1.94
3770 5293 3.525537 AGAAGACGACGATGAATGCATT 58.474 40.909 12.83 12.83 34.11 3.56
3772 5295 2.654749 AGAAGACGACGATGAATGCA 57.345 45.000 0.00 0.00 0.00 3.96
3773 5296 3.182967 AGAAGAAGACGACGATGAATGC 58.817 45.455 0.00 0.00 0.00 3.56
3774 5297 5.098893 AGAAGAAGAAGACGACGATGAATG 58.901 41.667 0.00 0.00 0.00 2.67
3775 5298 5.317733 AGAAGAAGAAGACGACGATGAAT 57.682 39.130 0.00 0.00 0.00 2.57
3776 5299 4.768130 AGAAGAAGAAGACGACGATGAA 57.232 40.909 0.00 0.00 0.00 2.57
3778 5301 3.060098 GCAAGAAGAAGAAGACGACGATG 59.940 47.826 0.00 0.00 0.00 3.84
3780 5303 2.034179 TGCAAGAAGAAGAAGACGACGA 59.966 45.455 0.00 0.00 0.00 4.20
3781 5304 2.394708 TGCAAGAAGAAGAAGACGACG 58.605 47.619 0.00 0.00 0.00 5.12
3782 5305 3.555956 TGTTGCAAGAAGAAGAAGACGAC 59.444 43.478 0.00 0.00 0.00 4.34
3783 5306 3.792401 TGTTGCAAGAAGAAGAAGACGA 58.208 40.909 0.00 0.00 0.00 4.20
3784 5307 4.739046 ATGTTGCAAGAAGAAGAAGACG 57.261 40.909 0.00 0.00 0.00 4.18
3785 5308 7.195839 ACTAATGTTGCAAGAAGAAGAAGAC 57.804 36.000 0.00 0.00 0.00 3.01
3786 5309 7.807977 AACTAATGTTGCAAGAAGAAGAAGA 57.192 32.000 0.00 0.00 34.71 2.87
3787 5310 8.131100 TGAAACTAATGTTGCAAGAAGAAGAAG 58.869 33.333 0.00 0.00 38.69 2.85
3922 5472 0.953960 AACGAGGAAATGGACACCGC 60.954 55.000 0.00 0.00 0.00 5.68
3964 5514 3.473647 CGATGGCCAGCCTCTCCA 61.474 66.667 16.93 0.00 36.94 3.86
3985 5535 2.046285 CAACAATCCCCAGCCCGAC 61.046 63.158 0.00 0.00 0.00 4.79
4062 5612 6.219473 AGTATGTTTCAAGTCAGACTGTCAG 58.781 40.000 10.88 1.73 35.30 3.51
4087 5637 7.218228 AGTGCATCTTTACAATGTTGAATCA 57.782 32.000 0.00 0.00 0.00 2.57
4088 5638 7.411157 GCAAGTGCATCTTTACAATGTTGAATC 60.411 37.037 0.00 0.00 41.59 2.52
4113 5663 0.898320 TGAGCCTCTAAGTCCTGTGC 59.102 55.000 0.00 0.00 0.00 4.57
4123 5673 2.283604 TGCCGGTGTGAGCCTCTA 60.284 61.111 1.90 0.00 0.00 2.43
4139 5695 3.562779 CTTGGCCACGGCTTTGCTG 62.563 63.158 3.88 0.00 41.60 4.41
4140 5696 3.297620 CTTGGCCACGGCTTTGCT 61.298 61.111 3.88 0.00 41.60 3.91
4152 5708 4.725790 AAAAATCTCATACAGGCTTGGC 57.274 40.909 0.00 0.00 0.00 4.52
4175 5734 4.980339 ATGCAAACCCTGGAAGAAAAAT 57.020 36.364 0.00 0.00 34.07 1.82
4186 5745 4.000988 CAGTTACTACGAATGCAAACCCT 58.999 43.478 0.00 0.00 0.00 4.34
4201 5760 3.322254 CACACTCTCTGAACCCAGTTACT 59.678 47.826 0.00 0.00 41.16 2.24
4269 5832 4.930696 TGGCTCGTCCCTAGATATTATGA 58.069 43.478 0.00 0.00 0.00 2.15
4270 5833 5.595885 CATGGCTCGTCCCTAGATATTATG 58.404 45.833 0.00 0.00 0.00 1.90
4271 5834 4.100189 GCATGGCTCGTCCCTAGATATTAT 59.900 45.833 0.00 0.00 0.00 1.28
4298 5933 2.101249 ACAGCCATTTGTGTGTTTCAGG 59.899 45.455 0.00 0.00 0.00 3.86
4299 5934 3.441496 ACAGCCATTTGTGTGTTTCAG 57.559 42.857 0.00 0.00 0.00 3.02
4300 5935 3.883830 AACAGCCATTTGTGTGTTTCA 57.116 38.095 0.00 0.00 28.62 2.69
4301 5936 5.544136 AAAAACAGCCATTTGTGTGTTTC 57.456 34.783 0.15 0.00 41.19 2.78
4322 5962 8.868522 ATTCAGAATATCAACTGTTGAGGAAA 57.131 30.769 25.40 12.98 43.98 3.13
4381 6026 0.467384 AGGCTGGTTCATCATCTCCG 59.533 55.000 0.00 0.00 0.00 4.63
4410 6055 1.300697 GCTTGCTTGCTTGCTTGCT 60.301 52.632 10.35 0.00 0.00 3.91
4411 6056 1.155424 TTGCTTGCTTGCTTGCTTGC 61.155 50.000 10.35 7.41 34.50 4.01
4412 6057 0.859232 CTTGCTTGCTTGCTTGCTTG 59.141 50.000 10.35 0.00 0.00 4.01
4415 6060 1.155424 TTGCTTGCTTGCTTGCTTGC 61.155 50.000 10.35 7.41 34.50 4.01
4460 6109 8.347035 GCTACCTCTGTACTCAAGACTAATTAG 58.653 40.741 11.05 11.05 0.00 1.73
4487 6136 2.485903 CTCTCTGCTTCATGCCATCTC 58.514 52.381 0.00 0.00 42.00 2.75
4616 6326 2.211806 GCCTTTTTCAATTGCAGTGCA 58.788 42.857 15.37 15.37 36.47 4.57
4680 6399 9.593565 TCACCACCATCTATCTATATATCCATC 57.406 37.037 0.00 0.00 0.00 3.51
4682 6401 9.958125 AATCACCACCATCTATCTATATATCCA 57.042 33.333 0.00 0.00 0.00 3.41
4688 6419 7.891712 TCCGTAAATCACCACCATCTATCTATA 59.108 37.037 0.00 0.00 0.00 1.31
4854 9896 2.296190 TGATGCACTACCTATACCAGCG 59.704 50.000 0.00 0.00 0.00 5.18
4881 9923 3.129502 CTCACGGGCAGGCACATG 61.130 66.667 0.00 0.00 0.00 3.21
4882 9924 4.415150 CCTCACGGGCAGGCACAT 62.415 66.667 0.00 0.00 0.00 3.21
4893 9935 3.842923 AGATGCGCTCCCCTCACG 61.843 66.667 9.73 0.00 0.00 4.35
4906 9958 4.794648 TTTCCCCGCCGGCAGATG 62.795 66.667 28.98 9.99 0.00 2.90
4937 9994 1.616725 CCTCTGCCTCTGTCTCTGTCT 60.617 57.143 0.00 0.00 0.00 3.41
4938 9995 0.817013 CCTCTGCCTCTGTCTCTGTC 59.183 60.000 0.00 0.00 0.00 3.51
4939 9996 0.407528 TCCTCTGCCTCTGTCTCTGT 59.592 55.000 0.00 0.00 0.00 3.41
4940 9997 1.105457 CTCCTCTGCCTCTGTCTCTG 58.895 60.000 0.00 0.00 0.00 3.35
4967 10024 3.378427 AGATAAAATCAGCCTGAAACGCC 59.622 43.478 0.00 0.00 0.00 5.68
4968 10025 4.622701 AGATAAAATCAGCCTGAAACGC 57.377 40.909 0.00 0.00 0.00 4.84
4969 10026 7.216317 CGTTTAAGATAAAATCAGCCTGAAACG 59.784 37.037 0.00 2.56 38.51 3.60
4970 10027 7.008357 GCGTTTAAGATAAAATCAGCCTGAAAC 59.992 37.037 0.00 0.00 0.00 2.78
4971 10028 7.027161 GCGTTTAAGATAAAATCAGCCTGAAA 58.973 34.615 0.00 0.00 0.00 2.69
4976 10033 5.677178 CGAAGCGTTTAAGATAAAATCAGCC 59.323 40.000 0.00 0.00 0.00 4.85
4977 10034 5.677178 CCGAAGCGTTTAAGATAAAATCAGC 59.323 40.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.