Multiple sequence alignment - TraesCS3B01G479700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G479700 chr3B 100.000 3127 0 0 955 4081 727740549 727743675 0.000000e+00 5775.0
1 TraesCS3B01G479700 chr3B 78.294 2262 332 82 1151 3334 605912628 605910448 0.000000e+00 1310.0
2 TraesCS3B01G479700 chr3B 79.776 1874 259 63 1043 2839 728890683 728888853 0.000000e+00 1251.0
3 TraesCS3B01G479700 chr3B 77.634 2240 319 94 1000 3163 728510829 728508696 0.000000e+00 1194.0
4 TraesCS3B01G479700 chr3B 100.000 596 0 0 1 596 727739595 727740190 0.000000e+00 1101.0
5 TraesCS3B01G479700 chr3B 77.847 1932 263 86 1289 3163 728617857 728616034 0.000000e+00 1044.0
6 TraesCS3B01G479700 chr3B 81.137 1267 180 28 1044 2279 728754011 728752773 0.000000e+00 961.0
7 TraesCS3B01G479700 chr3B 78.977 1251 200 35 999 2199 727786518 727787755 0.000000e+00 795.0
8 TraesCS3B01G479700 chr3B 77.370 654 96 28 2712 3334 728584145 728583513 1.400000e-89 340.0
9 TraesCS3B01G479700 chr3B 79.821 446 59 16 2901 3338 728888759 728888337 3.080000e-76 296.0
10 TraesCS3B01G479700 chr3B 97.561 123 3 0 3336 3458 284489703 284489825 1.150000e-50 211.0
11 TraesCS3B01G479700 chr3B 90.833 120 8 3 3957 4075 728615078 728614961 1.520000e-34 158.0
12 TraesCS3B01G479700 chr3D 96.225 1881 64 5 955 2831 548694287 548696164 0.000000e+00 3073.0
13 TraesCS3B01G479700 chr3D 79.000 2419 353 85 1000 3342 458885955 458883616 0.000000e+00 1509.0
14 TraesCS3B01G479700 chr3D 88.108 1295 123 17 999 2274 548711730 548713012 0.000000e+00 1509.0
15 TraesCS3B01G479700 chr3D 77.839 2351 343 92 1046 3325 549061921 549059678 0.000000e+00 1291.0
16 TraesCS3B01G479700 chr3D 77.249 2123 277 98 1286 3325 549109532 549107533 0.000000e+00 1055.0
17 TraesCS3B01G479700 chr3D 80.626 1373 201 38 1000 2343 549349809 549348473 0.000000e+00 1002.0
18 TraesCS3B01G479700 chr3D 97.692 520 6 3 2821 3338 548706103 548706618 0.000000e+00 889.0
19 TraesCS3B01G479700 chr3D 80.556 1188 170 31 1039 2188 549074044 549072880 0.000000e+00 857.0
20 TraesCS3B01G479700 chr3D 96.857 509 13 1 3452 3957 548706617 548707125 0.000000e+00 848.0
21 TraesCS3B01G479700 chr3D 79.038 1331 203 44 999 2274 548725550 548726859 0.000000e+00 843.0
22 TraesCS3B01G479700 chr3D 80.553 1157 162 33 1000 2121 549468015 549466887 0.000000e+00 832.0
23 TraesCS3B01G479700 chr3D 92.537 469 20 9 26 493 548689677 548690131 0.000000e+00 658.0
24 TraesCS3B01G479700 chr3D 83.263 711 94 14 1000 1688 549056871 549056164 7.440000e-177 630.0
25 TraesCS3B01G479700 chr3D 78.325 1015 140 44 2168 3135 549052536 549051555 2.110000e-162 582.0
26 TraesCS3B01G479700 chr3D 87.354 514 49 9 2271 2776 548713133 548713638 3.540000e-160 575.0
27 TraesCS3B01G479700 chr3D 80.431 603 72 20 2113 2688 549464203 549463620 6.310000e-113 418.0
28 TraesCS3B01G479700 chr3D 90.175 285 18 3 2835 3117 548713642 548713918 3.000000e-96 363.0
29 TraesCS3B01G479700 chr3D 75.679 773 105 42 2596 3338 549066768 549066049 3.960000e-80 309.0
30 TraesCS3B01G479700 chr3D 80.815 417 56 13 2267 2680 548726928 548727323 5.120000e-79 305.0
31 TraesCS3B01G479700 chr3D 81.132 371 62 5 2202 2569 549067314 549066949 1.440000e-74 291.0
32 TraesCS3B01G479700 chr3D 96.774 124 3 1 3958 4081 548707253 548707375 5.350000e-49 206.0
33 TraesCS3B01G479700 chr3D 89.024 164 15 2 3627 3789 288550614 288550453 2.490000e-47 200.0
34 TraesCS3B01G479700 chr3D 94.400 125 7 0 3336 3460 95239648 95239772 4.160000e-45 193.0
35 TraesCS3B01G479700 chr3D 93.600 125 6 2 3957 4081 548714612 548714734 6.970000e-43 185.0
36 TraesCS3B01G479700 chr3D 91.129 124 7 4 476 596 548694147 548694269 9.070000e-37 165.0
37 TraesCS3B01G479700 chr3D 82.400 125 17 4 3786 3905 549059507 549059383 2.010000e-18 104.0
38 TraesCS3B01G479700 chr3D 94.030 67 4 0 3533 3599 548714243 548714309 7.220000e-18 102.0
39 TraesCS3B01G479700 chr3A 94.169 1835 82 13 955 2776 686183027 686184849 0.000000e+00 2772.0
40 TraesCS3B01G479700 chr3A 79.200 2024 293 66 1000 2957 601133970 601132009 0.000000e+00 1288.0
41 TraesCS3B01G479700 chr3A 77.792 2373 337 101 1028 3325 686539233 686536976 0.000000e+00 1288.0
42 TraesCS3B01G479700 chr3A 81.312 1311 177 40 1000 2273 686749856 686748577 0.000000e+00 1002.0
43 TraesCS3B01G479700 chr3A 79.023 1330 200 42 999 2271 686189712 686191019 0.000000e+00 837.0
44 TraesCS3B01G479700 chr3A 80.716 866 115 29 1807 2652 686549839 686549006 9.630000e-176 627.0
45 TraesCS3B01G479700 chr3A 81.552 786 106 17 1000 1767 686551627 686550863 2.700000e-171 612.0
46 TraesCS3B01G479700 chr3A 91.608 286 12 5 2835 3117 686184853 686185129 6.400000e-103 385.0
47 TraesCS3B01G479700 chr3A 78.116 658 90 26 2712 3338 686548983 686548349 6.440000e-98 368.0
48 TraesCS3B01G479700 chr3A 92.265 181 11 3 3142 3320 686185125 686185304 1.880000e-63 254.0
49 TraesCS3B01G479700 chr3A 93.220 118 6 2 3964 4081 686185996 686186111 5.420000e-39 172.0
50 TraesCS3B01G479700 chr3A 84.921 126 14 5 3957 4081 686192771 686192892 5.540000e-24 122.0
51 TraesCS3B01G479700 chr3A 94.030 67 4 0 3533 3599 686185619 686185685 7.220000e-18 102.0
52 TraesCS3B01G479700 chr7B 79.115 2351 347 81 1043 3312 543187029 543189316 0.000000e+00 1489.0
53 TraesCS3B01G479700 chr7B 84.892 139 21 0 328 466 58793594 58793456 1.530000e-29 141.0
54 TraesCS3B01G479700 chr7B 83.607 122 12 4 3811 3930 486415107 486414992 1.550000e-19 108.0
55 TraesCS3B01G479700 chr2B 97.581 124 3 0 3330 3453 17575748 17575871 3.200000e-51 213.0
56 TraesCS3B01G479700 chr2B 89.308 159 15 2 3628 3786 190023045 190022889 8.950000e-47 198.0
57 TraesCS3B01G479700 chr2B 77.778 135 28 2 327 460 628398837 628398704 9.400000e-12 82.4
58 TraesCS3B01G479700 chr6B 80.808 297 30 16 3057 3338 383601257 383601541 1.490000e-49 207.0
59 TraesCS3B01G479700 chr6B 95.161 124 6 0 3337 3460 92916339 92916462 3.220000e-46 196.0
60 TraesCS3B01G479700 chr5B 98.305 118 2 0 3336 3453 525451601 525451718 1.490000e-49 207.0
61 TraesCS3B01G479700 chr5B 96.639 119 4 0 3335 3453 655145207 655145325 8.950000e-47 198.0
62 TraesCS3B01G479700 chr2D 90.062 161 14 1 3625 3785 79056162 79056320 1.490000e-49 207.0
63 TraesCS3B01G479700 chr2D 90.000 160 12 3 3630 3788 445186730 445186886 1.920000e-48 204.0
64 TraesCS3B01G479700 chr4B 95.968 124 5 0 3330 3453 30364995 30365118 6.920000e-48 202.0
65 TraesCS3B01G479700 chr4B 96.639 119 4 0 3337 3455 588198627 588198509 8.950000e-47 198.0
66 TraesCS3B01G479700 chr2A 89.441 161 15 1 3625 3785 79316000 79316158 6.920000e-48 202.0
67 TraesCS3B01G479700 chr2A 89.308 159 15 1 3628 3786 141506472 141506316 8.950000e-47 198.0
68 TraesCS3B01G479700 chr5A 90.667 150 12 1 3637 3786 255608719 255608572 8.950000e-47 198.0
69 TraesCS3B01G479700 chr5A 81.818 143 14 6 3811 3947 103311018 103310882 4.310000e-20 110.0
70 TraesCS3B01G479700 chr4D 89.241 158 15 2 3630 3787 335774284 335774439 3.220000e-46 196.0
71 TraesCS3B01G479700 chr1B 94.400 125 5 2 3330 3453 2406637 2406514 1.500000e-44 191.0
72 TraesCS3B01G479700 chr7D 83.486 109 17 1 327 434 153638349 153638241 2.600000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G479700 chr3B 727739595 727743675 4080 False 3438.000000 5775 100.000000 1 4081 2 chr3B.!!$F3 4080
1 TraesCS3B01G479700 chr3B 605910448 605912628 2180 True 1310.000000 1310 78.294000 1151 3334 1 chr3B.!!$R1 2183
2 TraesCS3B01G479700 chr3B 728508696 728510829 2133 True 1194.000000 1194 77.634000 1000 3163 1 chr3B.!!$R2 2163
3 TraesCS3B01G479700 chr3B 728752773 728754011 1238 True 961.000000 961 81.137000 1044 2279 1 chr3B.!!$R4 1235
4 TraesCS3B01G479700 chr3B 727786518 727787755 1237 False 795.000000 795 78.977000 999 2199 1 chr3B.!!$F2 1200
5 TraesCS3B01G479700 chr3B 728888337 728890683 2346 True 773.500000 1251 79.798500 1043 3338 2 chr3B.!!$R6 2295
6 TraesCS3B01G479700 chr3B 728614961 728617857 2896 True 601.000000 1044 84.340000 1289 4075 2 chr3B.!!$R5 2786
7 TraesCS3B01G479700 chr3B 728583513 728584145 632 True 340.000000 340 77.370000 2712 3334 1 chr3B.!!$R3 622
8 TraesCS3B01G479700 chr3D 548694147 548696164 2017 False 1619.000000 3073 93.677000 476 2831 2 chr3D.!!$F3 2355
9 TraesCS3B01G479700 chr3D 458883616 458885955 2339 True 1509.000000 1509 79.000000 1000 3342 1 chr3D.!!$R2 2342
10 TraesCS3B01G479700 chr3D 549107533 549109532 1999 True 1055.000000 1055 77.249000 1286 3325 1 chr3D.!!$R4 2039
11 TraesCS3B01G479700 chr3D 549348473 549349809 1336 True 1002.000000 1002 80.626000 1000 2343 1 chr3D.!!$R5 1343
12 TraesCS3B01G479700 chr3D 549072880 549074044 1164 True 857.000000 857 80.556000 1039 2188 1 chr3D.!!$R3 1149
13 TraesCS3B01G479700 chr3D 549051555 549061921 10366 True 651.750000 1291 80.456750 1000 3905 4 chr3D.!!$R6 2905
14 TraesCS3B01G479700 chr3D 548706103 548707375 1272 False 647.666667 889 97.107667 2821 4081 3 chr3D.!!$F4 1260
15 TraesCS3B01G479700 chr3D 549463620 549468015 4395 True 625.000000 832 80.492000 1000 2688 2 chr3D.!!$R8 1688
16 TraesCS3B01G479700 chr3D 548725550 548727323 1773 False 574.000000 843 79.926500 999 2680 2 chr3D.!!$F6 1681
17 TraesCS3B01G479700 chr3D 548711730 548714734 3004 False 546.800000 1509 90.653400 999 4081 5 chr3D.!!$F5 3082
18 TraesCS3B01G479700 chr3D 549066049 549067314 1265 True 300.000000 309 78.405500 2202 3338 2 chr3D.!!$R7 1136
19 TraesCS3B01G479700 chr3A 601132009 601133970 1961 True 1288.000000 1288 79.200000 1000 2957 1 chr3A.!!$R1 1957
20 TraesCS3B01G479700 chr3A 686536976 686539233 2257 True 1288.000000 1288 77.792000 1028 3325 1 chr3A.!!$R2 2297
21 TraesCS3B01G479700 chr3A 686748577 686749856 1279 True 1002.000000 1002 81.312000 1000 2273 1 chr3A.!!$R3 1273
22 TraesCS3B01G479700 chr3A 686183027 686192892 9865 False 663.428571 2772 89.890857 955 4081 7 chr3A.!!$F1 3126
23 TraesCS3B01G479700 chr3A 686548349 686551627 3278 True 535.666667 627 80.128000 1000 3338 3 chr3A.!!$R4 2338
24 TraesCS3B01G479700 chr7B 543187029 543189316 2287 False 1489.000000 1489 79.115000 1043 3312 1 chr7B.!!$F1 2269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.036164 TCCGAACCATCACAAGTGGG 59.964 55.0 0.0 0.0 41.14 4.61 F
72 73 0.036164 CCGAACCATCACAAGTGGGA 59.964 55.0 0.0 0.0 41.14 4.37 F
297 298 0.042188 CGAAAGACTTGTGTGCCACG 60.042 55.0 0.0 0.0 37.14 4.94 F
463 464 0.108329 ACCGATTGCCGAACAGGTAG 60.108 55.0 0.0 0.0 43.70 3.18 F
464 465 0.108329 CCGATTGCCGAACAGGTAGT 60.108 55.0 0.0 0.0 43.70 2.73 F
1827 9579 0.252375 AAGATGGTGGGCTTGGCATT 60.252 50.0 0.0 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 1468 0.389166 CAGGTCGTTGTCCAGCTCTC 60.389 60.000 0.00 0.00 0.00 3.20 R
1849 9604 3.181446 GGCTCTCTCTTCCATATTTGGCT 60.181 47.826 0.00 0.00 43.29 4.75 R
2281 13090 2.264109 ACAGCGTAGAACAGTGATCG 57.736 50.000 0.00 0.00 0.00 3.69 R
2418 13261 1.228245 GCAGGGCTCTTCCACAACA 60.228 57.895 0.00 0.00 36.21 3.33 R
2479 13323 0.323087 AAACACAATAGGTCGGGCCC 60.323 55.000 13.57 13.57 38.26 5.80 R
3430 14658 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.020914 GCTGATTTATTCCTCACTTAAGTGG 57.979 40.000 30.35 21.52 45.65 4.00
25 26 6.458888 GCTGATTTATTCCTCACTTAAGTGGC 60.459 42.308 30.35 18.65 45.65 5.01
26 27 6.480763 TGATTTATTCCTCACTTAAGTGGCA 58.519 36.000 30.35 14.87 45.65 4.92
27 28 7.118723 TGATTTATTCCTCACTTAAGTGGCAT 58.881 34.615 30.35 19.80 45.65 4.40
28 29 6.757897 TTTATTCCTCACTTAAGTGGCATG 57.242 37.500 30.35 18.92 45.65 4.06
29 30 2.787473 TCCTCACTTAAGTGGCATGG 57.213 50.000 30.35 24.92 45.65 3.66
30 31 1.985159 TCCTCACTTAAGTGGCATGGT 59.015 47.619 30.35 0.00 45.65 3.55
31 32 2.027192 TCCTCACTTAAGTGGCATGGTC 60.027 50.000 30.35 0.00 45.65 4.02
32 33 2.002586 CTCACTTAAGTGGCATGGTCG 58.997 52.381 30.35 6.61 45.65 4.79
33 34 1.086696 CACTTAAGTGGCATGGTCGG 58.913 55.000 25.19 0.00 42.10 4.79
34 35 0.690762 ACTTAAGTGGCATGGTCGGT 59.309 50.000 7.48 0.00 0.00 4.69
35 36 1.086696 CTTAAGTGGCATGGTCGGTG 58.913 55.000 0.00 0.00 0.00 4.94
36 37 0.687920 TTAAGTGGCATGGTCGGTGA 59.312 50.000 0.00 0.00 0.00 4.02
37 38 0.908910 TAAGTGGCATGGTCGGTGAT 59.091 50.000 0.00 0.00 0.00 3.06
38 39 0.677731 AAGTGGCATGGTCGGTGATG 60.678 55.000 0.00 0.00 0.00 3.07
39 40 2.438254 TGGCATGGTCGGTGATGC 60.438 61.111 0.00 0.00 43.60 3.91
40 41 2.124570 GGCATGGTCGGTGATGCT 60.125 61.111 11.51 0.00 43.77 3.79
41 42 2.182842 GGCATGGTCGGTGATGCTC 61.183 63.158 11.51 1.80 43.77 4.26
42 43 2.182842 GCATGGTCGGTGATGCTCC 61.183 63.158 0.00 0.00 41.52 4.70
43 44 1.221566 CATGGTCGGTGATGCTCCA 59.778 57.895 0.00 0.00 0.00 3.86
44 45 0.179037 CATGGTCGGTGATGCTCCAT 60.179 55.000 0.00 0.00 39.14 3.41
45 46 0.548031 ATGGTCGGTGATGCTCCATT 59.452 50.000 0.00 0.00 35.69 3.16
46 47 0.392863 TGGTCGGTGATGCTCCATTG 60.393 55.000 0.00 0.00 0.00 2.82
47 48 0.392998 GGTCGGTGATGCTCCATTGT 60.393 55.000 0.00 0.00 0.00 2.71
48 49 1.134521 GGTCGGTGATGCTCCATTGTA 60.135 52.381 0.00 0.00 0.00 2.41
49 50 2.627945 GTCGGTGATGCTCCATTGTAA 58.372 47.619 0.00 0.00 0.00 2.41
50 51 3.206150 GTCGGTGATGCTCCATTGTAAT 58.794 45.455 0.00 0.00 0.00 1.89
51 52 3.627577 GTCGGTGATGCTCCATTGTAATT 59.372 43.478 0.00 0.00 0.00 1.40
52 53 4.096382 GTCGGTGATGCTCCATTGTAATTT 59.904 41.667 0.00 0.00 0.00 1.82
53 54 4.335315 TCGGTGATGCTCCATTGTAATTTC 59.665 41.667 0.00 0.00 0.00 2.17
54 55 4.498009 CGGTGATGCTCCATTGTAATTTCC 60.498 45.833 0.00 0.00 0.00 3.13
55 56 4.498009 GGTGATGCTCCATTGTAATTTCCG 60.498 45.833 0.00 0.00 0.00 4.30
56 57 4.335315 GTGATGCTCCATTGTAATTTCCGA 59.665 41.667 0.00 0.00 0.00 4.55
57 58 4.946772 TGATGCTCCATTGTAATTTCCGAA 59.053 37.500 0.00 0.00 0.00 4.30
58 59 4.695217 TGCTCCATTGTAATTTCCGAAC 57.305 40.909 0.00 0.00 0.00 3.95
59 60 3.442273 TGCTCCATTGTAATTTCCGAACC 59.558 43.478 0.00 0.00 0.00 3.62
60 61 3.442273 GCTCCATTGTAATTTCCGAACCA 59.558 43.478 0.00 0.00 0.00 3.67
61 62 4.097892 GCTCCATTGTAATTTCCGAACCAT 59.902 41.667 0.00 0.00 0.00 3.55
62 63 5.733373 GCTCCATTGTAATTTCCGAACCATC 60.733 44.000 0.00 0.00 0.00 3.51
63 64 5.257262 TCCATTGTAATTTCCGAACCATCA 58.743 37.500 0.00 0.00 0.00 3.07
64 65 5.124776 TCCATTGTAATTTCCGAACCATCAC 59.875 40.000 0.00 0.00 0.00 3.06
65 66 5.105957 CCATTGTAATTTCCGAACCATCACA 60.106 40.000 0.00 0.00 0.00 3.58
66 67 6.385843 CATTGTAATTTCCGAACCATCACAA 58.614 36.000 0.00 0.00 0.00 3.33
67 68 5.621197 TGTAATTTCCGAACCATCACAAG 57.379 39.130 0.00 0.00 0.00 3.16
68 69 5.067273 TGTAATTTCCGAACCATCACAAGT 58.933 37.500 0.00 0.00 0.00 3.16
69 70 4.503741 AATTTCCGAACCATCACAAGTG 57.496 40.909 0.00 0.00 0.00 3.16
70 71 1.890876 TTCCGAACCATCACAAGTGG 58.109 50.000 0.00 0.00 42.55 4.00
71 72 0.036164 TCCGAACCATCACAAGTGGG 59.964 55.000 0.00 0.00 41.14 4.61
72 73 0.036164 CCGAACCATCACAAGTGGGA 59.964 55.000 0.00 0.00 41.14 4.37
73 74 1.544537 CCGAACCATCACAAGTGGGAA 60.545 52.381 0.00 0.00 41.14 3.97
74 75 2.226330 CGAACCATCACAAGTGGGAAA 58.774 47.619 0.00 0.00 41.14 3.13
75 76 2.031157 CGAACCATCACAAGTGGGAAAC 60.031 50.000 0.00 0.00 41.14 2.78
89 90 2.201921 GGAAACCTTTCTCCCCACTC 57.798 55.000 0.00 0.00 37.35 3.51
90 91 1.423921 GGAAACCTTTCTCCCCACTCA 59.576 52.381 0.00 0.00 37.35 3.41
91 92 2.158519 GGAAACCTTTCTCCCCACTCAA 60.159 50.000 0.00 0.00 37.35 3.02
92 93 3.500471 GGAAACCTTTCTCCCCACTCAAT 60.500 47.826 0.00 0.00 37.35 2.57
93 94 3.903530 AACCTTTCTCCCCACTCAATT 57.096 42.857 0.00 0.00 0.00 2.32
94 95 3.441500 ACCTTTCTCCCCACTCAATTC 57.558 47.619 0.00 0.00 0.00 2.17
95 96 2.290323 ACCTTTCTCCCCACTCAATTCG 60.290 50.000 0.00 0.00 0.00 3.34
96 97 2.290323 CCTTTCTCCCCACTCAATTCGT 60.290 50.000 0.00 0.00 0.00 3.85
97 98 3.055385 CCTTTCTCCCCACTCAATTCGTA 60.055 47.826 0.00 0.00 0.00 3.43
98 99 3.887621 TTCTCCCCACTCAATTCGTAG 57.112 47.619 0.00 0.00 0.00 3.51
99 100 3.095912 TCTCCCCACTCAATTCGTAGA 57.904 47.619 0.00 0.00 0.00 2.59
100 101 3.643237 TCTCCCCACTCAATTCGTAGAT 58.357 45.455 0.00 0.00 35.04 1.98
101 102 4.800023 TCTCCCCACTCAATTCGTAGATA 58.200 43.478 0.00 0.00 35.04 1.98
102 103 5.394738 TCTCCCCACTCAATTCGTAGATAT 58.605 41.667 0.00 0.00 35.04 1.63
103 104 5.477291 TCTCCCCACTCAATTCGTAGATATC 59.523 44.000 0.00 0.00 35.04 1.63
104 105 5.394738 TCCCCACTCAATTCGTAGATATCT 58.605 41.667 10.73 10.73 35.04 1.98
105 106 5.477291 TCCCCACTCAATTCGTAGATATCTC 59.523 44.000 8.95 0.43 35.04 2.75
106 107 5.478679 CCCCACTCAATTCGTAGATATCTCT 59.521 44.000 8.95 0.00 35.04 3.10
107 108 6.015010 CCCCACTCAATTCGTAGATATCTCTT 60.015 42.308 8.95 0.00 35.04 2.85
108 109 7.087639 CCCACTCAATTCGTAGATATCTCTTC 58.912 42.308 8.95 0.73 35.04 2.87
109 110 7.040062 CCCACTCAATTCGTAGATATCTCTTCT 60.040 40.741 8.95 0.00 35.04 2.85
110 111 8.356657 CCACTCAATTCGTAGATATCTCTTCTT 58.643 37.037 8.95 0.00 35.04 2.52
111 112 9.179552 CACTCAATTCGTAGATATCTCTTCTTG 57.820 37.037 8.95 8.26 35.04 3.02
112 113 8.908903 ACTCAATTCGTAGATATCTCTTCTTGT 58.091 33.333 8.95 0.00 35.04 3.16
119 120 8.894731 TCGTAGATATCTCTTCTTGTATATGGC 58.105 37.037 8.95 0.00 32.66 4.40
120 121 8.132362 CGTAGATATCTCTTCTTGTATATGGCC 58.868 40.741 8.95 0.00 32.66 5.36
121 122 9.196139 GTAGATATCTCTTCTTGTATATGGCCT 57.804 37.037 8.95 0.00 32.66 5.19
123 124 9.196139 AGATATCTCTTCTTGTATATGGCCTAC 57.804 37.037 3.32 0.00 0.00 3.18
124 125 8.901472 ATATCTCTTCTTGTATATGGCCTACA 57.099 34.615 3.32 0.96 0.00 2.74
125 126 7.805083 ATCTCTTCTTGTATATGGCCTACAT 57.195 36.000 3.32 0.00 43.68 2.29
126 127 6.997655 TCTCTTCTTGTATATGGCCTACATG 58.002 40.000 3.32 7.22 40.82 3.21
127 128 6.554982 TCTCTTCTTGTATATGGCCTACATGT 59.445 38.462 3.32 2.69 40.82 3.21
128 129 7.071196 TCTCTTCTTGTATATGGCCTACATGTT 59.929 37.037 2.30 0.00 40.82 2.71
129 130 7.573710 TCTTCTTGTATATGGCCTACATGTTT 58.426 34.615 2.30 0.00 40.82 2.83
130 131 8.052748 TCTTCTTGTATATGGCCTACATGTTTT 58.947 33.333 2.30 0.00 40.82 2.43
131 132 7.566760 TCTTGTATATGGCCTACATGTTTTG 57.433 36.000 2.30 0.00 40.82 2.44
132 133 7.116075 TCTTGTATATGGCCTACATGTTTTGT 58.884 34.615 2.30 0.00 40.82 2.83
133 134 6.691754 TGTATATGGCCTACATGTTTTGTG 57.308 37.500 2.30 0.00 40.82 3.33
134 135 6.184068 TGTATATGGCCTACATGTTTTGTGT 58.816 36.000 2.30 0.00 40.82 3.72
135 136 3.940209 ATGGCCTACATGTTTTGTGTG 57.060 42.857 2.30 0.00 39.48 3.82
136 137 2.937519 TGGCCTACATGTTTTGTGTGA 58.062 42.857 2.30 0.00 39.48 3.58
137 138 3.495331 TGGCCTACATGTTTTGTGTGAT 58.505 40.909 2.30 0.00 39.48 3.06
138 139 3.894427 TGGCCTACATGTTTTGTGTGATT 59.106 39.130 2.30 0.00 39.48 2.57
139 140 4.343526 TGGCCTACATGTTTTGTGTGATTT 59.656 37.500 2.30 0.00 39.48 2.17
140 141 5.536538 TGGCCTACATGTTTTGTGTGATTTA 59.463 36.000 2.30 0.00 39.48 1.40
141 142 6.210385 TGGCCTACATGTTTTGTGTGATTTAT 59.790 34.615 2.30 0.00 39.48 1.40
142 143 6.751888 GGCCTACATGTTTTGTGTGATTTATC 59.248 38.462 2.30 0.00 39.48 1.75
143 144 7.362920 GGCCTACATGTTTTGTGTGATTTATCT 60.363 37.037 2.30 0.00 39.48 1.98
144 145 8.028938 GCCTACATGTTTTGTGTGATTTATCTT 58.971 33.333 2.30 0.00 39.48 2.40
145 146 9.912634 CCTACATGTTTTGTGTGATTTATCTTT 57.087 29.630 2.30 0.00 39.48 2.52
202 203 9.480053 AAATTTGTATCATTGGAGACTTGTTTG 57.520 29.630 0.00 0.00 36.24 2.93
203 204 7.815840 TTTGTATCATTGGAGACTTGTTTGA 57.184 32.000 0.00 0.00 36.24 2.69
204 205 7.815840 TTGTATCATTGGAGACTTGTTTGAA 57.184 32.000 0.00 0.00 36.24 2.69
205 206 8.408043 TTGTATCATTGGAGACTTGTTTGAAT 57.592 30.769 0.00 0.00 36.24 2.57
206 207 9.513906 TTGTATCATTGGAGACTTGTTTGAATA 57.486 29.630 0.00 0.00 36.24 1.75
207 208 9.166173 TGTATCATTGGAGACTTGTTTGAATAG 57.834 33.333 0.00 0.00 36.24 1.73
208 209 9.383519 GTATCATTGGAGACTTGTTTGAATAGA 57.616 33.333 0.00 0.00 32.52 1.98
209 210 8.868522 ATCATTGGAGACTTGTTTGAATAGAA 57.131 30.769 0.00 0.00 0.00 2.10
210 211 8.868522 TCATTGGAGACTTGTTTGAATAGAAT 57.131 30.769 0.00 0.00 0.00 2.40
211 212 8.950210 TCATTGGAGACTTGTTTGAATAGAATC 58.050 33.333 0.00 0.00 0.00 2.52
212 213 8.733458 CATTGGAGACTTGTTTGAATAGAATCA 58.267 33.333 0.00 0.00 0.00 2.57
213 214 8.868522 TTGGAGACTTGTTTGAATAGAATCAT 57.131 30.769 0.00 0.00 0.00 2.45
214 215 9.958180 TTGGAGACTTGTTTGAATAGAATCATA 57.042 29.630 0.00 0.00 0.00 2.15
264 265 6.321848 CCAACTCTGGTTAAAATTAACGGT 57.678 37.500 9.30 0.00 42.97 4.83
265 266 6.376177 CCAACTCTGGTTAAAATTAACGGTC 58.624 40.000 9.30 0.00 42.97 4.79
266 267 6.016943 CCAACTCTGGTTAAAATTAACGGTCA 60.017 38.462 9.30 2.86 42.97 4.02
267 268 7.419204 CAACTCTGGTTAAAATTAACGGTCAA 58.581 34.615 9.30 0.00 42.97 3.18
268 269 7.571080 ACTCTGGTTAAAATTAACGGTCAAA 57.429 32.000 9.30 0.00 42.97 2.69
269 270 7.420002 ACTCTGGTTAAAATTAACGGTCAAAC 58.580 34.615 9.30 0.00 42.97 2.93
270 271 7.283807 ACTCTGGTTAAAATTAACGGTCAAACT 59.716 33.333 9.30 0.00 42.97 2.66
271 272 7.998580 TCTGGTTAAAATTAACGGTCAAACTT 58.001 30.769 9.30 0.00 42.97 2.66
272 273 9.118300 TCTGGTTAAAATTAACGGTCAAACTTA 57.882 29.630 9.30 0.00 42.97 2.24
273 274 9.902196 CTGGTTAAAATTAACGGTCAAACTTAT 57.098 29.630 9.30 0.00 42.97 1.73
274 275 9.680315 TGGTTAAAATTAACGGTCAAACTTATG 57.320 29.630 9.30 0.00 42.97 1.90
275 276 9.681692 GGTTAAAATTAACGGTCAAACTTATGT 57.318 29.630 9.30 0.00 42.97 2.29
279 280 8.496872 AAATTAACGGTCAAACTTATGTTTCG 57.503 30.769 3.86 7.72 43.75 3.46
280 281 6.841443 TTAACGGTCAAACTTATGTTTCGA 57.159 33.333 15.89 9.84 43.75 3.71
281 282 5.738118 AACGGTCAAACTTATGTTTCGAA 57.262 34.783 15.89 0.00 43.75 3.71
282 283 5.738118 ACGGTCAAACTTATGTTTCGAAA 57.262 34.783 6.47 6.47 43.75 3.46
283 284 5.744490 ACGGTCAAACTTATGTTTCGAAAG 58.256 37.500 11.66 1.06 43.75 2.62
284 285 5.524646 ACGGTCAAACTTATGTTTCGAAAGA 59.475 36.000 11.66 11.01 43.75 2.52
285 286 5.844396 CGGTCAAACTTATGTTTCGAAAGAC 59.156 40.000 11.66 11.14 43.75 3.01
286 287 6.292703 CGGTCAAACTTATGTTTCGAAAGACT 60.293 38.462 11.66 3.30 43.75 3.24
287 288 7.415229 GGTCAAACTTATGTTTCGAAAGACTT 58.585 34.615 11.66 2.28 43.75 3.01
288 289 7.376072 GGTCAAACTTATGTTTCGAAAGACTTG 59.624 37.037 11.66 9.40 43.75 3.16
289 290 7.908601 GTCAAACTTATGTTTCGAAAGACTTGT 59.091 33.333 11.66 6.81 43.75 3.16
290 291 7.908082 TCAAACTTATGTTTCGAAAGACTTGTG 59.092 33.333 11.66 5.10 43.75 3.33
291 292 6.920569 ACTTATGTTTCGAAAGACTTGTGT 57.079 33.333 11.66 3.38 41.84 3.72
292 293 6.715464 ACTTATGTTTCGAAAGACTTGTGTG 58.285 36.000 11.66 0.45 41.84 3.82
293 294 3.398954 TGTTTCGAAAGACTTGTGTGC 57.601 42.857 11.66 0.00 41.84 4.57
294 295 2.096819 TGTTTCGAAAGACTTGTGTGCC 59.903 45.455 11.66 0.00 41.84 5.01
295 296 2.031258 TTCGAAAGACTTGTGTGCCA 57.969 45.000 0.00 0.00 41.84 4.92
296 297 1.295792 TCGAAAGACTTGTGTGCCAC 58.704 50.000 0.00 0.00 33.31 5.01
297 298 0.042188 CGAAAGACTTGTGTGCCACG 60.042 55.000 0.00 0.00 37.14 4.94
298 299 1.014352 GAAAGACTTGTGTGCCACGT 58.986 50.000 0.00 0.00 37.14 4.49
299 300 0.732571 AAAGACTTGTGTGCCACGTG 59.267 50.000 9.08 9.08 37.14 4.49
300 301 0.392461 AAGACTTGTGTGCCACGTGT 60.392 50.000 15.65 0.00 37.14 4.49
301 302 0.810031 AGACTTGTGTGCCACGTGTC 60.810 55.000 15.65 0.98 38.48 3.67
302 303 2.089433 GACTTGTGTGCCACGTGTCG 62.089 60.000 15.65 0.51 37.14 4.35
303 304 1.880796 CTTGTGTGCCACGTGTCGA 60.881 57.895 15.65 0.00 37.14 4.20
304 305 1.425267 CTTGTGTGCCACGTGTCGAA 61.425 55.000 15.65 0.00 37.14 3.71
305 306 1.425267 TTGTGTGCCACGTGTCGAAG 61.425 55.000 15.65 0.00 37.14 3.79
306 307 2.279851 TGTGCCACGTGTCGAAGG 60.280 61.111 15.65 0.00 0.00 3.46
307 308 3.041940 GTGCCACGTGTCGAAGGG 61.042 66.667 15.65 0.00 0.00 3.95
308 309 3.542676 TGCCACGTGTCGAAGGGT 61.543 61.111 15.65 0.00 0.00 4.34
309 310 3.041940 GCCACGTGTCGAAGGGTG 61.042 66.667 15.65 0.00 0.00 4.61
310 311 2.357034 CCACGTGTCGAAGGGTGG 60.357 66.667 15.65 13.55 43.41 4.61
311 312 2.732016 CACGTGTCGAAGGGTGGA 59.268 61.111 7.58 0.00 0.00 4.02
312 313 1.068417 CACGTGTCGAAGGGTGGAA 59.932 57.895 7.58 0.00 0.00 3.53
313 314 0.944311 CACGTGTCGAAGGGTGGAAG 60.944 60.000 7.58 0.00 0.00 3.46
314 315 2.027625 CGTGTCGAAGGGTGGAAGC 61.028 63.158 0.00 0.00 0.00 3.86
315 316 1.070786 GTGTCGAAGGGTGGAAGCA 59.929 57.895 0.00 0.00 34.77 3.91
316 317 0.534203 GTGTCGAAGGGTGGAAGCAA 60.534 55.000 0.00 0.00 34.77 3.91
317 318 0.400213 TGTCGAAGGGTGGAAGCAAT 59.600 50.000 0.00 0.00 34.77 3.56
318 319 1.626321 TGTCGAAGGGTGGAAGCAATA 59.374 47.619 0.00 0.00 34.77 1.90
319 320 2.238646 TGTCGAAGGGTGGAAGCAATAT 59.761 45.455 0.00 0.00 34.77 1.28
320 321 3.452990 TGTCGAAGGGTGGAAGCAATATA 59.547 43.478 0.00 0.00 34.77 0.86
321 322 4.080807 TGTCGAAGGGTGGAAGCAATATAA 60.081 41.667 0.00 0.00 34.77 0.98
322 323 4.511826 GTCGAAGGGTGGAAGCAATATAAG 59.488 45.833 0.00 0.00 34.77 1.73
323 324 4.163458 TCGAAGGGTGGAAGCAATATAAGT 59.837 41.667 0.00 0.00 34.77 2.24
324 325 5.364446 TCGAAGGGTGGAAGCAATATAAGTA 59.636 40.000 0.00 0.00 34.77 2.24
325 326 5.696724 CGAAGGGTGGAAGCAATATAAGTAG 59.303 44.000 0.00 0.00 34.77 2.57
326 327 5.568620 AGGGTGGAAGCAATATAAGTAGG 57.431 43.478 0.00 0.00 34.77 3.18
327 328 4.351111 AGGGTGGAAGCAATATAAGTAGGG 59.649 45.833 0.00 0.00 34.77 3.53
328 329 4.506802 GGGTGGAAGCAATATAAGTAGGGG 60.507 50.000 0.00 0.00 34.77 4.79
329 330 4.072839 GTGGAAGCAATATAAGTAGGGGC 58.927 47.826 0.00 0.00 0.00 5.80
330 331 3.073946 TGGAAGCAATATAAGTAGGGGCC 59.926 47.826 0.00 0.00 0.00 5.80
331 332 3.330998 GGAAGCAATATAAGTAGGGGCCT 59.669 47.826 0.84 0.00 0.00 5.19
332 333 4.327680 GAAGCAATATAAGTAGGGGCCTG 58.672 47.826 0.84 0.00 0.00 4.85
333 334 2.040412 AGCAATATAAGTAGGGGCCTGC 59.960 50.000 0.84 0.48 0.00 4.85
334 335 2.040412 GCAATATAAGTAGGGGCCTGCT 59.960 50.000 0.84 0.00 40.65 4.24
335 336 3.870299 GCAATATAAGTAGGGGCCTGCTC 60.870 52.174 0.84 0.00 38.02 4.26
336 337 1.629043 TATAAGTAGGGGCCTGCTCG 58.371 55.000 0.84 0.00 38.02 5.03
337 338 1.122019 ATAAGTAGGGGCCTGCTCGG 61.122 60.000 0.84 0.00 38.02 4.63
338 339 2.232892 TAAGTAGGGGCCTGCTCGGA 62.233 60.000 0.84 0.00 38.02 4.55
339 340 3.541713 GTAGGGGCCTGCTCGGAG 61.542 72.222 0.84 0.00 33.16 4.63
340 341 4.075793 TAGGGGCCTGCTCGGAGT 62.076 66.667 0.84 0.00 33.16 3.85
344 345 4.070552 GGCCTGCTCGGAGTCGTT 62.071 66.667 6.90 0.00 37.69 3.85
345 346 2.507324 GCCTGCTCGGAGTCGTTC 60.507 66.667 6.90 0.00 37.69 3.95
346 347 2.182030 CCTGCTCGGAGTCGTTCC 59.818 66.667 6.90 0.00 43.04 3.62
353 354 2.893398 GGAGTCGTTCCGCTCCAT 59.107 61.111 16.65 0.00 43.80 3.41
354 355 1.519455 GGAGTCGTTCCGCTCCATG 60.519 63.158 16.65 0.00 43.80 3.66
355 356 1.511305 GAGTCGTTCCGCTCCATGA 59.489 57.895 0.00 0.00 0.00 3.07
356 357 0.802607 GAGTCGTTCCGCTCCATGAC 60.803 60.000 0.00 0.00 0.00 3.06
357 358 1.215647 GTCGTTCCGCTCCATGACT 59.784 57.895 0.00 0.00 0.00 3.41
358 359 0.802607 GTCGTTCCGCTCCATGACTC 60.803 60.000 0.00 0.00 0.00 3.36
359 360 1.519455 CGTTCCGCTCCATGACTCC 60.519 63.158 0.00 0.00 0.00 3.85
360 361 1.519455 GTTCCGCTCCATGACTCCG 60.519 63.158 0.00 0.00 0.00 4.63
361 362 3.371097 TTCCGCTCCATGACTCCGC 62.371 63.158 0.00 0.00 0.00 5.54
362 363 3.842923 CCGCTCCATGACTCCGCT 61.843 66.667 0.00 0.00 0.00 5.52
363 364 2.279120 CGCTCCATGACTCCGCTC 60.279 66.667 0.00 0.00 0.00 5.03
364 365 2.107953 GCTCCATGACTCCGCTCC 59.892 66.667 0.00 0.00 0.00 4.70
365 366 2.818132 CTCCATGACTCCGCTCCC 59.182 66.667 0.00 0.00 0.00 4.30
366 367 3.144120 CTCCATGACTCCGCTCCCG 62.144 68.421 0.00 0.00 0.00 5.14
391 392 3.350612 CGGAGCCGCGGTTGAAAA 61.351 61.111 28.70 0.00 0.00 2.29
392 393 2.686816 CGGAGCCGCGGTTGAAAAT 61.687 57.895 28.70 3.94 0.00 1.82
393 394 1.136774 GGAGCCGCGGTTGAAAATC 59.863 57.895 28.70 7.34 0.00 2.17
394 395 1.582610 GGAGCCGCGGTTGAAAATCA 61.583 55.000 28.70 0.00 0.00 2.57
395 396 0.451783 GAGCCGCGGTTGAAAATCAT 59.548 50.000 28.70 0.00 0.00 2.45
396 397 0.171007 AGCCGCGGTTGAAAATCATG 59.829 50.000 28.70 0.00 0.00 3.07
397 398 0.801836 GCCGCGGTTGAAAATCATGG 60.802 55.000 28.70 0.00 0.00 3.66
398 399 0.808125 CCGCGGTTGAAAATCATGGA 59.192 50.000 19.50 0.00 0.00 3.41
399 400 1.202177 CCGCGGTTGAAAATCATGGAG 60.202 52.381 19.50 0.00 0.00 3.86
400 401 1.202177 CGCGGTTGAAAATCATGGAGG 60.202 52.381 0.00 0.00 0.00 4.30
401 402 2.091541 GCGGTTGAAAATCATGGAGGA 58.908 47.619 0.00 0.00 0.00 3.71
402 403 2.098117 GCGGTTGAAAATCATGGAGGAG 59.902 50.000 0.00 0.00 0.00 3.69
403 404 2.684881 CGGTTGAAAATCATGGAGGAGG 59.315 50.000 0.00 0.00 0.00 4.30
404 405 2.428530 GGTTGAAAATCATGGAGGAGGC 59.571 50.000 0.00 0.00 0.00 4.70
405 406 3.091545 GTTGAAAATCATGGAGGAGGCA 58.908 45.455 0.00 0.00 0.00 4.75
406 407 3.454719 TGAAAATCATGGAGGAGGCAA 57.545 42.857 0.00 0.00 0.00 4.52
407 408 3.777087 TGAAAATCATGGAGGAGGCAAA 58.223 40.909 0.00 0.00 0.00 3.68
408 409 4.355549 TGAAAATCATGGAGGAGGCAAAT 58.644 39.130 0.00 0.00 0.00 2.32
409 410 5.517924 TGAAAATCATGGAGGAGGCAAATA 58.482 37.500 0.00 0.00 0.00 1.40
410 411 5.595542 TGAAAATCATGGAGGAGGCAAATAG 59.404 40.000 0.00 0.00 0.00 1.73
411 412 5.393068 AAATCATGGAGGAGGCAAATAGA 57.607 39.130 0.00 0.00 0.00 1.98
412 413 5.595814 AATCATGGAGGAGGCAAATAGAT 57.404 39.130 0.00 0.00 0.00 1.98
413 414 6.708885 AATCATGGAGGAGGCAAATAGATA 57.291 37.500 0.00 0.00 0.00 1.98
414 415 5.489792 TCATGGAGGAGGCAAATAGATAC 57.510 43.478 0.00 0.00 0.00 2.24
415 416 5.158141 TCATGGAGGAGGCAAATAGATACT 58.842 41.667 0.00 0.00 0.00 2.12
416 417 5.247110 TCATGGAGGAGGCAAATAGATACTC 59.753 44.000 0.00 0.00 0.00 2.59
417 418 3.904339 TGGAGGAGGCAAATAGATACTCC 59.096 47.826 0.00 0.00 46.27 3.85
419 420 2.689646 GGAGGCAAATAGATACTCCGC 58.310 52.381 0.00 0.00 38.44 5.54
420 421 2.037251 GGAGGCAAATAGATACTCCGCA 59.963 50.000 0.00 0.00 38.44 5.69
421 422 3.321497 GAGGCAAATAGATACTCCGCAG 58.679 50.000 0.00 0.00 0.00 5.18
422 423 2.965831 AGGCAAATAGATACTCCGCAGA 59.034 45.455 0.00 0.00 0.00 4.26
423 424 3.580458 AGGCAAATAGATACTCCGCAGAT 59.420 43.478 0.00 0.00 0.00 2.90
424 425 3.929610 GGCAAATAGATACTCCGCAGATC 59.070 47.826 0.00 0.00 0.00 2.75
425 426 3.929610 GCAAATAGATACTCCGCAGATCC 59.070 47.826 0.00 0.00 0.00 3.36
426 427 4.322349 GCAAATAGATACTCCGCAGATCCT 60.322 45.833 0.00 0.00 0.00 3.24
427 428 5.788450 CAAATAGATACTCCGCAGATCCTT 58.212 41.667 0.00 0.00 0.00 3.36
428 429 5.398603 AATAGATACTCCGCAGATCCTTG 57.601 43.478 0.00 0.00 0.00 3.61
429 430 2.672098 AGATACTCCGCAGATCCTTGT 58.328 47.619 0.00 0.00 0.00 3.16
430 431 3.833732 AGATACTCCGCAGATCCTTGTA 58.166 45.455 0.00 0.00 0.00 2.41
431 432 4.411927 AGATACTCCGCAGATCCTTGTAT 58.588 43.478 0.00 0.00 0.00 2.29
432 433 4.835615 AGATACTCCGCAGATCCTTGTATT 59.164 41.667 0.00 0.00 0.00 1.89
433 434 3.914426 ACTCCGCAGATCCTTGTATTT 57.086 42.857 0.00 0.00 0.00 1.40
434 435 4.222124 ACTCCGCAGATCCTTGTATTTT 57.778 40.909 0.00 0.00 0.00 1.82
435 436 5.353394 ACTCCGCAGATCCTTGTATTTTA 57.647 39.130 0.00 0.00 0.00 1.52
436 437 5.116882 ACTCCGCAGATCCTTGTATTTTAC 58.883 41.667 0.00 0.00 0.00 2.01
437 438 5.092554 TCCGCAGATCCTTGTATTTTACA 57.907 39.130 0.00 0.00 36.79 2.41
438 439 5.116180 TCCGCAGATCCTTGTATTTTACAG 58.884 41.667 0.00 0.00 40.24 2.74
439 440 5.105106 TCCGCAGATCCTTGTATTTTACAGA 60.105 40.000 0.00 0.00 40.24 3.41
440 441 5.235186 CCGCAGATCCTTGTATTTTACAGAG 59.765 44.000 0.00 0.00 40.24 3.35
441 442 5.277058 CGCAGATCCTTGTATTTTACAGAGC 60.277 44.000 0.00 0.00 40.24 4.09
442 443 5.819901 GCAGATCCTTGTATTTTACAGAGCT 59.180 40.000 0.00 0.00 40.24 4.09
443 444 6.238320 GCAGATCCTTGTATTTTACAGAGCTG 60.238 42.308 13.49 13.49 43.92 4.24
444 445 7.044181 CAGATCCTTGTATTTTACAGAGCTGA 58.956 38.462 12.91 0.00 43.87 4.26
445 446 7.010923 CAGATCCTTGTATTTTACAGAGCTGAC 59.989 40.741 12.91 0.00 43.87 3.51
446 447 5.488341 TCCTTGTATTTTACAGAGCTGACC 58.512 41.667 4.21 0.00 40.24 4.02
447 448 4.330074 CCTTGTATTTTACAGAGCTGACCG 59.670 45.833 4.21 0.00 40.24 4.79
448 449 4.794278 TGTATTTTACAGAGCTGACCGA 57.206 40.909 4.21 0.00 34.06 4.69
449 450 5.339008 TGTATTTTACAGAGCTGACCGAT 57.661 39.130 4.21 0.00 34.06 4.18
450 451 5.730550 TGTATTTTACAGAGCTGACCGATT 58.269 37.500 4.21 0.00 34.06 3.34
451 452 5.580691 TGTATTTTACAGAGCTGACCGATTG 59.419 40.000 4.21 0.00 34.06 2.67
452 453 2.010145 TTACAGAGCTGACCGATTGC 57.990 50.000 4.21 0.00 0.00 3.56
453 454 0.175760 TACAGAGCTGACCGATTGCC 59.824 55.000 4.21 0.00 0.00 4.52
454 455 2.169789 CAGAGCTGACCGATTGCCG 61.170 63.158 0.00 0.00 38.18 5.69
455 456 2.184322 GAGCTGACCGATTGCCGA 59.816 61.111 0.00 0.00 41.76 5.54
456 457 1.447838 GAGCTGACCGATTGCCGAA 60.448 57.895 0.00 0.00 41.76 4.30
457 458 1.696832 GAGCTGACCGATTGCCGAAC 61.697 60.000 0.00 0.00 41.76 3.95
458 459 2.032634 GCTGACCGATTGCCGAACA 61.033 57.895 0.00 0.00 41.76 3.18
459 460 1.970917 GCTGACCGATTGCCGAACAG 61.971 60.000 0.00 0.00 41.76 3.16
460 461 1.361668 CTGACCGATTGCCGAACAGG 61.362 60.000 0.00 0.00 41.76 4.00
461 462 1.375523 GACCGATTGCCGAACAGGT 60.376 57.895 0.00 0.00 43.70 4.00
462 463 0.108520 GACCGATTGCCGAACAGGTA 60.109 55.000 0.00 0.00 43.70 3.08
463 464 0.108329 ACCGATTGCCGAACAGGTAG 60.108 55.000 0.00 0.00 43.70 3.18
464 465 0.108329 CCGATTGCCGAACAGGTAGT 60.108 55.000 0.00 0.00 43.70 2.73
465 466 1.135527 CCGATTGCCGAACAGGTAGTA 59.864 52.381 0.00 0.00 43.70 1.82
466 467 2.223971 CCGATTGCCGAACAGGTAGTAT 60.224 50.000 0.00 0.00 43.70 2.12
467 468 3.454375 CGATTGCCGAACAGGTAGTATT 58.546 45.455 0.00 0.00 43.70 1.89
468 469 4.500205 CCGATTGCCGAACAGGTAGTATTA 60.500 45.833 0.00 0.00 43.70 0.98
469 470 5.045215 CGATTGCCGAACAGGTAGTATTAA 58.955 41.667 0.00 0.00 43.70 1.40
470 471 5.694910 CGATTGCCGAACAGGTAGTATTAAT 59.305 40.000 0.00 0.00 43.70 1.40
471 472 6.346598 CGATTGCCGAACAGGTAGTATTAATG 60.347 42.308 0.00 0.00 43.70 1.90
472 473 5.601583 TGCCGAACAGGTAGTATTAATGA 57.398 39.130 0.00 0.00 43.70 2.57
473 474 5.597806 TGCCGAACAGGTAGTATTAATGAG 58.402 41.667 0.00 0.00 43.70 2.90
474 475 5.128171 TGCCGAACAGGTAGTATTAATGAGT 59.872 40.000 0.00 0.00 43.70 3.41
504 505 8.084684 GTGTGCCTTTTCTTTCTGAGATAAAAT 58.915 33.333 0.00 0.00 33.49 1.82
526 527 6.726490 ATTGAGGTGTATCTAACGGTGTAT 57.274 37.500 0.00 0.00 0.00 2.29
527 528 5.762825 TGAGGTGTATCTAACGGTGTATC 57.237 43.478 0.00 0.00 0.00 2.24
533 534 6.982141 GGTGTATCTAACGGTGTATCATTTCA 59.018 38.462 0.00 0.00 0.00 2.69
536 537 9.093970 TGTATCTAACGGTGTATCATTTCAAAG 57.906 33.333 0.00 0.00 0.00 2.77
537 538 9.309516 GTATCTAACGGTGTATCATTTCAAAGA 57.690 33.333 0.00 0.00 0.00 2.52
581 585 2.884639 AGTGGAGTTTTATGTGTGTGGC 59.115 45.455 0.00 0.00 0.00 5.01
589 593 6.868622 AGTTTTATGTGTGTGGCTGTTAAAA 58.131 32.000 0.00 0.00 0.00 1.52
590 594 7.496747 AGTTTTATGTGTGTGGCTGTTAAAAT 58.503 30.769 0.00 0.00 0.00 1.82
591 595 7.437862 AGTTTTATGTGTGTGGCTGTTAAAATG 59.562 33.333 0.00 0.00 0.00 2.32
593 597 4.991153 TGTGTGTGGCTGTTAAAATGAA 57.009 36.364 0.00 0.00 0.00 2.57
595 599 4.048504 GTGTGTGGCTGTTAAAATGAACC 58.951 43.478 0.00 0.00 0.00 3.62
980 984 2.679642 CGGCAGCCAATTCCCCAA 60.680 61.111 13.30 0.00 0.00 4.12
1080 1097 1.226323 CCCAGACGACGACGACATC 60.226 63.158 15.32 0.99 42.66 3.06
1195 1212 3.186047 AATTCCGACGCCGCTTCG 61.186 61.111 12.04 12.04 36.20 3.79
1442 1468 4.873129 CCGGCTCATCGTCCCACG 62.873 72.222 0.00 0.00 44.19 4.94
1827 9579 0.252375 AAGATGGTGGGCTTGGCATT 60.252 50.000 0.00 0.00 0.00 3.56
1849 9604 7.201758 GCATTATCCATCTCTCAACATTTCACA 60.202 37.037 0.00 0.00 0.00 3.58
1987 9760 3.941483 CGAGGACAGTAATGCAATCCTTT 59.059 43.478 2.74 0.00 39.96 3.11
2059 9832 9.332713 AGTTTAAGAAAATTTCCAATATGGGGA 57.667 29.630 1.57 0.00 38.32 4.81
2217 12697 4.758688 TGAGTGTTACGCTGATGATTGAT 58.241 39.130 2.11 0.00 0.00 2.57
2404 13245 3.689649 GCATAACAGTTGGAAATCGACCT 59.310 43.478 0.00 0.00 0.00 3.85
2418 13261 7.015292 TGGAAATCGACCTAATAGCTATTGTCT 59.985 37.037 25.99 11.28 0.00 3.41
2484 13330 5.887214 ACTGGAAAATAATAAATGGGCCC 57.113 39.130 17.59 17.59 0.00 5.80
2485 13331 4.343814 ACTGGAAAATAATAAATGGGCCCG 59.656 41.667 19.37 0.00 0.00 6.13
2554 13405 6.959639 TTTCCTTTTGCTTAGTCTGACAAT 57.040 33.333 10.88 0.00 0.00 2.71
2726 13759 4.148079 TGAATGTGTAACTCCATTGCCAA 58.852 39.130 0.00 0.00 38.04 4.52
2817 13863 9.778993 CTATTATGTTTTGTGGAATGTCTTCTG 57.221 33.333 0.00 0.00 0.00 3.02
2833 13887 2.233305 TCTGGAAGTGAGGGGTCTAC 57.767 55.000 0.00 0.00 33.76 2.59
2905 14007 6.127810 TCGATCACATAACTACACAGTACC 57.872 41.667 0.00 0.00 33.48 3.34
2919 14021 2.824341 ACAGTACCCACCTCTTAGTTCG 59.176 50.000 0.00 0.00 0.00 3.95
3048 14165 3.056821 TGGTGGAGATGACGTGTTAGAAG 60.057 47.826 0.00 0.00 0.00 2.85
3121 14243 8.421784 TGAAGGTGATGTTACATTATCTCCTAC 58.578 37.037 3.36 0.00 43.04 3.18
3122 14244 8.554490 AAGGTGATGTTACATTATCTCCTACT 57.446 34.615 3.36 0.00 43.04 2.57
3123 14245 9.656323 AAGGTGATGTTACATTATCTCCTACTA 57.344 33.333 3.36 0.00 43.04 1.82
3134 14256 9.775539 ACATTATCTCCTACTATATGTGTCCAT 57.224 33.333 0.00 0.00 34.97 3.41
3339 14567 8.537016 TCTGTTAGCACATTGGTAAGTTATACT 58.463 33.333 0.00 0.00 40.47 2.12
3340 14568 8.712285 TGTTAGCACATTGGTAAGTTATACTC 57.288 34.615 0.00 0.00 40.47 2.59
3341 14569 7.767198 TGTTAGCACATTGGTAAGTTATACTCC 59.233 37.037 0.00 0.00 40.47 3.85
3342 14570 5.681639 AGCACATTGGTAAGTTATACTCCC 58.318 41.667 0.00 0.00 0.00 4.30
3343 14571 5.428783 AGCACATTGGTAAGTTATACTCCCT 59.571 40.000 0.00 0.00 0.00 4.20
3344 14572 5.758784 GCACATTGGTAAGTTATACTCCCTC 59.241 44.000 0.00 0.00 0.00 4.30
3345 14573 6.289064 CACATTGGTAAGTTATACTCCCTCC 58.711 44.000 0.00 0.00 0.00 4.30
3346 14574 5.070047 ACATTGGTAAGTTATACTCCCTCCG 59.930 44.000 0.00 0.00 0.00 4.63
3347 14575 4.255510 TGGTAAGTTATACTCCCTCCGT 57.744 45.455 0.00 0.00 0.00 4.69
3348 14576 4.210331 TGGTAAGTTATACTCCCTCCGTC 58.790 47.826 0.00 0.00 0.00 4.79
3349 14577 3.571828 GGTAAGTTATACTCCCTCCGTCC 59.428 52.174 0.00 0.00 0.00 4.79
3350 14578 1.978454 AGTTATACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
3351 14579 1.492176 AGTTATACTCCCTCCGTCCGA 59.508 52.381 0.00 0.00 0.00 4.55
3352 14580 2.092212 AGTTATACTCCCTCCGTCCGAA 60.092 50.000 0.00 0.00 0.00 4.30
3353 14581 2.267174 TATACTCCCTCCGTCCGAAG 57.733 55.000 0.00 0.00 0.00 3.79
3354 14582 0.549950 ATACTCCCTCCGTCCGAAGA 59.450 55.000 0.00 0.00 0.00 2.87
3355 14583 0.549950 TACTCCCTCCGTCCGAAGAT 59.450 55.000 0.00 0.00 0.00 2.40
3356 14584 0.549950 ACTCCCTCCGTCCGAAGATA 59.450 55.000 0.00 0.00 0.00 1.98
3357 14585 0.953003 CTCCCTCCGTCCGAAGATAC 59.047 60.000 0.00 0.00 0.00 2.24
3358 14586 0.549950 TCCCTCCGTCCGAAGATACT 59.450 55.000 0.00 0.00 0.00 2.12
3359 14587 1.064166 TCCCTCCGTCCGAAGATACTT 60.064 52.381 0.00 0.00 0.00 2.24
3360 14588 1.067212 CCCTCCGTCCGAAGATACTTG 59.933 57.143 0.00 0.00 0.00 3.16
3361 14589 1.749634 CCTCCGTCCGAAGATACTTGT 59.250 52.381 0.00 0.00 0.00 3.16
3362 14590 2.223525 CCTCCGTCCGAAGATACTTGTC 60.224 54.545 0.00 0.00 0.00 3.18
3363 14591 1.399440 TCCGTCCGAAGATACTTGTCG 59.601 52.381 0.00 0.00 34.58 4.35
3369 14597 3.777465 CGAAGATACTTGTCGGAGGAA 57.223 47.619 0.00 0.00 0.00 3.36
3370 14598 4.308899 CGAAGATACTTGTCGGAGGAAT 57.691 45.455 0.00 0.00 0.00 3.01
3371 14599 4.045104 CGAAGATACTTGTCGGAGGAATG 58.955 47.826 0.00 0.00 0.00 2.67
3372 14600 4.372656 GAAGATACTTGTCGGAGGAATGG 58.627 47.826 0.00 0.00 0.00 3.16
3373 14601 3.643237 AGATACTTGTCGGAGGAATGGA 58.357 45.455 0.00 0.00 0.00 3.41
3374 14602 4.227197 AGATACTTGTCGGAGGAATGGAT 58.773 43.478 0.00 0.00 0.00 3.41
3375 14603 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
3376 14604 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
3377 14605 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
3378 14606 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
3379 14607 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
3380 14608 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
3381 14609 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
3382 14610 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
3383 14611 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
3384 14612 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
3385 14613 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
3386 14614 5.669477 GGAGGAATGGATGTATCTAGATGC 58.331 45.833 15.79 14.54 0.00 3.91
3387 14615 5.188555 GGAGGAATGGATGTATCTAGATGCA 59.811 44.000 23.38 23.38 37.79 3.96
3388 14616 6.296087 GGAGGAATGGATGTATCTAGATGCAA 60.296 42.308 24.65 11.20 37.00 4.08
3389 14617 7.268212 AGGAATGGATGTATCTAGATGCAAT 57.732 36.000 24.65 12.86 37.00 3.56
3390 14618 7.696981 AGGAATGGATGTATCTAGATGCAATT 58.303 34.615 24.65 19.35 37.00 2.32
3391 14619 8.168725 AGGAATGGATGTATCTAGATGCAATTT 58.831 33.333 24.65 15.78 37.00 1.82
3392 14620 9.453572 GGAATGGATGTATCTAGATGCAATTTA 57.546 33.333 24.65 13.22 37.00 1.40
3396 14624 9.494271 TGGATGTATCTAGATGCAATTTAGTTC 57.506 33.333 24.65 15.95 37.00 3.01
3397 14625 9.717942 GGATGTATCTAGATGCAATTTAGTTCT 57.282 33.333 24.65 7.43 37.00 3.01
3407 14635 9.717942 AGATGCAATTTAGTTCTAGATACATCC 57.282 33.333 14.92 5.87 31.63 3.51
3408 14636 9.494271 GATGCAATTTAGTTCTAGATACATCCA 57.506 33.333 0.00 0.00 0.00 3.41
3410 14638 9.851686 TGCAATTTAGTTCTAGATACATCCATT 57.148 29.630 0.00 0.00 0.00 3.16
3418 14646 8.717717 AGTTCTAGATACATCCATTTTCATCCA 58.282 33.333 0.00 0.00 0.00 3.41
3419 14647 9.512588 GTTCTAGATACATCCATTTTCATCCAT 57.487 33.333 0.00 0.00 0.00 3.41
3424 14652 9.075678 AGATACATCCATTTTCATCCATTTCTC 57.924 33.333 0.00 0.00 0.00 2.87
3425 14653 6.475596 ACATCCATTTTCATCCATTTCTCC 57.524 37.500 0.00 0.00 0.00 3.71
3426 14654 5.068198 ACATCCATTTTCATCCATTTCTCCG 59.932 40.000 0.00 0.00 0.00 4.63
3427 14655 4.854173 TCCATTTTCATCCATTTCTCCGA 58.146 39.130 0.00 0.00 0.00 4.55
3428 14656 4.640201 TCCATTTTCATCCATTTCTCCGAC 59.360 41.667 0.00 0.00 0.00 4.79
3429 14657 4.398988 CCATTTTCATCCATTTCTCCGACA 59.601 41.667 0.00 0.00 0.00 4.35
3430 14658 5.105797 CCATTTTCATCCATTTCTCCGACAA 60.106 40.000 0.00 0.00 0.00 3.18
3431 14659 5.627499 TTTTCATCCATTTCTCCGACAAG 57.373 39.130 0.00 0.00 0.00 3.16
3432 14660 3.981071 TCATCCATTTCTCCGACAAGT 57.019 42.857 0.00 0.00 0.00 3.16
3433 14661 5.414789 TTCATCCATTTCTCCGACAAGTA 57.585 39.130 0.00 0.00 0.00 2.24
3434 14662 5.614324 TCATCCATTTCTCCGACAAGTAT 57.386 39.130 0.00 0.00 0.00 2.12
3435 14663 5.989477 TCATCCATTTCTCCGACAAGTATT 58.011 37.500 0.00 0.00 0.00 1.89
3436 14664 6.414732 TCATCCATTTCTCCGACAAGTATTT 58.585 36.000 0.00 0.00 0.00 1.40
3437 14665 6.538742 TCATCCATTTCTCCGACAAGTATTTC 59.461 38.462 0.00 0.00 0.00 2.17
3438 14666 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
3439 14667 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3440 14668 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
3441 14669 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
3442 14670 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
3443 14671 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3444 14672 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3445 14673 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3446 14674 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3447 14675 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3448 14676 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3449 14677 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3450 14678 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3503 14732 7.756272 CAGATGTTGCTTTTGTTCTATATGCAA 59.244 33.333 0.00 0.00 36.74 4.08
3779 15130 9.661563 ACATCTTTTATATTTGTGAACGGAGTA 57.338 29.630 0.00 0.00 45.00 2.59
3841 15196 5.240183 TCAAAGGCTCATCTTTTCTGACTTG 59.760 40.000 0.00 0.00 35.04 3.16
3849 15204 5.122239 TCATCTTTTCTGACTTGTAATGCCG 59.878 40.000 0.00 0.00 0.00 5.69
3887 15257 2.027837 GCATCCATTTTGGGCTGAAAGT 60.028 45.455 0.00 0.00 38.32 2.66
3952 15907 7.042335 ACTAGTTGTGAGTAATTCCAGTATGC 58.958 38.462 0.00 0.00 31.97 3.14
3955 15932 7.620880 AGTTGTGAGTAATTCCAGTATGCTTA 58.379 34.615 0.00 0.00 31.97 3.09
3956 15933 8.267894 AGTTGTGAGTAATTCCAGTATGCTTAT 58.732 33.333 0.00 0.00 31.97 1.73
4028 16276 9.379791 CTTATCGGTGTAGGTTCTTCTATTTTT 57.620 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.086696 CCGACCATGCCACTTAAGTG 58.913 55.000 25.79 25.79 45.23 3.16
15 16 0.690762 ACCGACCATGCCACTTAAGT 59.309 50.000 1.12 1.12 0.00 2.24
16 17 1.086696 CACCGACCATGCCACTTAAG 58.913 55.000 0.00 0.00 0.00 1.85
17 18 0.687920 TCACCGACCATGCCACTTAA 59.312 50.000 0.00 0.00 0.00 1.85
18 19 0.908910 ATCACCGACCATGCCACTTA 59.091 50.000 0.00 0.00 0.00 2.24
19 20 0.677731 CATCACCGACCATGCCACTT 60.678 55.000 0.00 0.00 0.00 3.16
20 21 1.078214 CATCACCGACCATGCCACT 60.078 57.895 0.00 0.00 0.00 4.00
21 22 2.764314 GCATCACCGACCATGCCAC 61.764 63.158 2.07 0.00 39.70 5.01
22 23 2.438254 GCATCACCGACCATGCCA 60.438 61.111 2.07 0.00 39.70 4.92
23 24 2.124570 AGCATCACCGACCATGCC 60.125 61.111 8.31 0.00 45.63 4.40
24 25 2.182842 GGAGCATCACCGACCATGC 61.183 63.158 4.73 4.73 44.96 4.06
25 26 0.179037 ATGGAGCATCACCGACCATG 60.179 55.000 0.00 0.00 39.45 3.66
26 27 0.548031 AATGGAGCATCACCGACCAT 59.452 50.000 0.00 0.00 42.17 3.55
27 28 0.392863 CAATGGAGCATCACCGACCA 60.393 55.000 0.00 0.00 36.25 4.02
28 29 0.392998 ACAATGGAGCATCACCGACC 60.393 55.000 0.00 0.00 36.25 4.79
29 30 2.309528 TACAATGGAGCATCACCGAC 57.690 50.000 0.00 0.00 36.25 4.79
30 31 3.558931 ATTACAATGGAGCATCACCGA 57.441 42.857 0.00 0.00 36.25 4.69
31 32 4.498009 GGAAATTACAATGGAGCATCACCG 60.498 45.833 0.00 0.00 36.25 4.94
32 33 4.498009 CGGAAATTACAATGGAGCATCACC 60.498 45.833 0.00 0.00 36.25 4.02
33 34 4.335315 TCGGAAATTACAATGGAGCATCAC 59.665 41.667 0.00 0.00 36.25 3.06
34 35 4.522114 TCGGAAATTACAATGGAGCATCA 58.478 39.130 0.00 0.00 36.25 3.07
35 36 5.273944 GTTCGGAAATTACAATGGAGCATC 58.726 41.667 0.00 0.00 0.00 3.91
36 37 4.097892 GGTTCGGAAATTACAATGGAGCAT 59.902 41.667 0.00 0.00 0.00 3.79
37 38 3.442273 GGTTCGGAAATTACAATGGAGCA 59.558 43.478 0.00 0.00 0.00 4.26
38 39 3.442273 TGGTTCGGAAATTACAATGGAGC 59.558 43.478 0.00 0.00 0.00 4.70
39 40 5.356751 TGATGGTTCGGAAATTACAATGGAG 59.643 40.000 0.00 0.00 0.00 3.86
40 41 5.124776 GTGATGGTTCGGAAATTACAATGGA 59.875 40.000 0.00 0.00 0.00 3.41
41 42 5.105957 TGTGATGGTTCGGAAATTACAATGG 60.106 40.000 0.00 0.00 0.00 3.16
42 43 5.948588 TGTGATGGTTCGGAAATTACAATG 58.051 37.500 0.00 0.00 0.00 2.82
43 44 6.208599 ACTTGTGATGGTTCGGAAATTACAAT 59.791 34.615 11.04 3.24 31.79 2.71
44 45 5.533154 ACTTGTGATGGTTCGGAAATTACAA 59.467 36.000 10.47 10.47 31.47 2.41
45 46 5.049060 CACTTGTGATGGTTCGGAAATTACA 60.049 40.000 0.00 0.00 0.00 2.41
46 47 5.390613 CACTTGTGATGGTTCGGAAATTAC 58.609 41.667 0.00 0.00 0.00 1.89
47 48 4.457603 CCACTTGTGATGGTTCGGAAATTA 59.542 41.667 1.89 0.00 32.08 1.40
48 49 3.255642 CCACTTGTGATGGTTCGGAAATT 59.744 43.478 1.89 0.00 32.08 1.82
49 50 2.819608 CCACTTGTGATGGTTCGGAAAT 59.180 45.455 1.89 0.00 32.08 2.17
50 51 2.226330 CCACTTGTGATGGTTCGGAAA 58.774 47.619 1.89 0.00 32.08 3.13
51 52 1.544537 CCCACTTGTGATGGTTCGGAA 60.545 52.381 1.89 0.00 35.23 4.30
52 53 0.036164 CCCACTTGTGATGGTTCGGA 59.964 55.000 1.89 0.00 35.23 4.55
53 54 0.036164 TCCCACTTGTGATGGTTCGG 59.964 55.000 1.89 0.00 35.23 4.30
54 55 1.890876 TTCCCACTTGTGATGGTTCG 58.109 50.000 1.89 0.00 35.23 3.95
55 56 2.296190 GGTTTCCCACTTGTGATGGTTC 59.704 50.000 1.89 0.00 35.23 3.62
56 57 2.091333 AGGTTTCCCACTTGTGATGGTT 60.091 45.455 1.89 0.00 35.23 3.67
57 58 1.499007 AGGTTTCCCACTTGTGATGGT 59.501 47.619 1.89 0.00 35.23 3.55
58 59 2.292828 AGGTTTCCCACTTGTGATGG 57.707 50.000 1.89 0.00 36.94 3.51
59 60 3.891366 AGAAAGGTTTCCCACTTGTGATG 59.109 43.478 1.89 0.00 37.92 3.07
60 61 4.145052 GAGAAAGGTTTCCCACTTGTGAT 58.855 43.478 1.89 0.00 37.92 3.06
61 62 3.551846 GAGAAAGGTTTCCCACTTGTGA 58.448 45.455 1.89 0.00 37.92 3.58
62 63 2.623416 GGAGAAAGGTTTCCCACTTGTG 59.377 50.000 0.00 0.00 37.92 3.33
63 64 2.945456 GGAGAAAGGTTTCCCACTTGT 58.055 47.619 0.00 0.00 37.92 3.16
70 71 1.423921 TGAGTGGGGAGAAAGGTTTCC 59.576 52.381 0.00 0.00 37.92 3.13
71 72 2.951229 TGAGTGGGGAGAAAGGTTTC 57.049 50.000 0.00 0.00 37.45 2.78
72 73 3.903530 ATTGAGTGGGGAGAAAGGTTT 57.096 42.857 0.00 0.00 0.00 3.27
73 74 3.767711 GAATTGAGTGGGGAGAAAGGTT 58.232 45.455 0.00 0.00 0.00 3.50
74 75 2.290323 CGAATTGAGTGGGGAGAAAGGT 60.290 50.000 0.00 0.00 0.00 3.50
75 76 2.290323 ACGAATTGAGTGGGGAGAAAGG 60.290 50.000 0.00 0.00 0.00 3.11
76 77 3.059352 ACGAATTGAGTGGGGAGAAAG 57.941 47.619 0.00 0.00 0.00 2.62
77 78 3.835978 TCTACGAATTGAGTGGGGAGAAA 59.164 43.478 0.00 0.00 0.00 2.52
78 79 3.437213 TCTACGAATTGAGTGGGGAGAA 58.563 45.455 0.00 0.00 0.00 2.87
79 80 3.095912 TCTACGAATTGAGTGGGGAGA 57.904 47.619 0.00 0.00 0.00 3.71
80 81 5.478679 AGATATCTACGAATTGAGTGGGGAG 59.521 44.000 2.53 0.00 0.00 4.30
81 82 5.394738 AGATATCTACGAATTGAGTGGGGA 58.605 41.667 2.53 0.00 0.00 4.81
82 83 5.478679 AGAGATATCTACGAATTGAGTGGGG 59.521 44.000 4.89 0.00 0.00 4.96
83 84 6.582677 AGAGATATCTACGAATTGAGTGGG 57.417 41.667 4.89 0.00 0.00 4.61
84 85 7.881142 AGAAGAGATATCTACGAATTGAGTGG 58.119 38.462 4.89 0.00 0.00 4.00
85 86 9.179552 CAAGAAGAGATATCTACGAATTGAGTG 57.820 37.037 4.89 0.00 0.00 3.51
86 87 8.908903 ACAAGAAGAGATATCTACGAATTGAGT 58.091 33.333 4.89 0.00 0.00 3.41
93 94 8.894731 GCCATATACAAGAAGAGATATCTACGA 58.105 37.037 4.89 0.00 0.00 3.43
94 95 8.132362 GGCCATATACAAGAAGAGATATCTACG 58.868 40.741 4.89 0.00 0.00 3.51
95 96 9.196139 AGGCCATATACAAGAAGAGATATCTAC 57.804 37.037 5.01 0.78 0.00 2.59
97 98 9.196139 GTAGGCCATATACAAGAAGAGATATCT 57.804 37.037 5.01 4.47 0.00 1.98
98 99 8.972127 TGTAGGCCATATACAAGAAGAGATATC 58.028 37.037 5.01 0.00 30.37 1.63
99 100 8.901472 TGTAGGCCATATACAAGAAGAGATAT 57.099 34.615 5.01 0.00 30.37 1.63
100 101 8.753133 CATGTAGGCCATATACAAGAAGAGATA 58.247 37.037 5.01 0.00 36.75 1.98
101 102 7.236432 ACATGTAGGCCATATACAAGAAGAGAT 59.764 37.037 5.01 0.00 36.75 2.75
102 103 6.554982 ACATGTAGGCCATATACAAGAAGAGA 59.445 38.462 5.01 0.00 36.75 3.10
103 104 6.763355 ACATGTAGGCCATATACAAGAAGAG 58.237 40.000 5.01 0.00 36.75 2.85
104 105 6.747414 ACATGTAGGCCATATACAAGAAGA 57.253 37.500 5.01 0.00 36.75 2.87
105 106 7.807977 AAACATGTAGGCCATATACAAGAAG 57.192 36.000 5.01 0.45 36.75 2.85
106 107 7.613801 ACAAAACATGTAGGCCATATACAAGAA 59.386 33.333 5.01 0.00 41.63 2.52
107 108 7.066887 CACAAAACATGTAGGCCATATACAAGA 59.933 37.037 5.01 0.00 41.46 3.02
108 109 7.148086 ACACAAAACATGTAGGCCATATACAAG 60.148 37.037 5.01 4.85 41.46 3.16
109 110 6.661377 ACACAAAACATGTAGGCCATATACAA 59.339 34.615 5.01 0.00 41.46 2.41
110 111 6.094742 CACACAAAACATGTAGGCCATATACA 59.905 38.462 5.01 5.52 41.46 2.29
111 112 6.317642 TCACACAAAACATGTAGGCCATATAC 59.682 38.462 5.01 0.00 41.46 1.47
112 113 6.418946 TCACACAAAACATGTAGGCCATATA 58.581 36.000 5.01 0.00 41.46 0.86
113 114 5.260424 TCACACAAAACATGTAGGCCATAT 58.740 37.500 5.01 0.00 41.46 1.78
114 115 4.657013 TCACACAAAACATGTAGGCCATA 58.343 39.130 5.01 0.00 41.46 2.74
115 116 3.495331 TCACACAAAACATGTAGGCCAT 58.505 40.909 5.01 0.00 41.46 4.40
116 117 2.937519 TCACACAAAACATGTAGGCCA 58.062 42.857 5.01 0.00 41.46 5.36
117 118 4.519540 AATCACACAAAACATGTAGGCC 57.480 40.909 0.00 0.00 41.46 5.19
118 119 7.538575 AGATAAATCACACAAAACATGTAGGC 58.461 34.615 0.00 0.00 41.46 3.93
119 120 9.912634 AAAGATAAATCACACAAAACATGTAGG 57.087 29.630 0.00 0.00 41.46 3.18
176 177 9.480053 CAAACAAGTCTCCAATGATACAAATTT 57.520 29.630 0.00 0.00 0.00 1.82
177 178 8.859090 TCAAACAAGTCTCCAATGATACAAATT 58.141 29.630 0.00 0.00 0.00 1.82
178 179 8.408043 TCAAACAAGTCTCCAATGATACAAAT 57.592 30.769 0.00 0.00 0.00 2.32
179 180 7.815840 TCAAACAAGTCTCCAATGATACAAA 57.184 32.000 0.00 0.00 0.00 2.83
180 181 7.815840 TTCAAACAAGTCTCCAATGATACAA 57.184 32.000 0.00 0.00 0.00 2.41
181 182 9.166173 CTATTCAAACAAGTCTCCAATGATACA 57.834 33.333 0.00 0.00 0.00 2.29
182 183 9.383519 TCTATTCAAACAAGTCTCCAATGATAC 57.616 33.333 0.00 0.00 0.00 2.24
183 184 9.958180 TTCTATTCAAACAAGTCTCCAATGATA 57.042 29.630 0.00 0.00 0.00 2.15
184 185 8.868522 TTCTATTCAAACAAGTCTCCAATGAT 57.131 30.769 0.00 0.00 0.00 2.45
185 186 8.868522 ATTCTATTCAAACAAGTCTCCAATGA 57.131 30.769 0.00 0.00 0.00 2.57
186 187 8.733458 TGATTCTATTCAAACAAGTCTCCAATG 58.267 33.333 0.00 0.00 0.00 2.82
187 188 8.868522 TGATTCTATTCAAACAAGTCTCCAAT 57.131 30.769 0.00 0.00 0.00 3.16
188 189 8.868522 ATGATTCTATTCAAACAAGTCTCCAA 57.131 30.769 0.00 0.00 0.00 3.53
224 225 9.927668 CCAGAGTTGGTTATTTTTCACATAATT 57.072 29.630 0.00 0.00 39.79 1.40
242 243 6.961576 TGACCGTTAATTTTAACCAGAGTTG 58.038 36.000 7.44 0.00 39.81 3.16
243 244 7.571080 TTGACCGTTAATTTTAACCAGAGTT 57.429 32.000 7.44 0.00 39.81 3.01
244 245 7.283807 AGTTTGACCGTTAATTTTAACCAGAGT 59.716 33.333 7.44 1.69 39.81 3.24
245 246 7.645402 AGTTTGACCGTTAATTTTAACCAGAG 58.355 34.615 7.44 0.00 39.81 3.35
246 247 7.571080 AGTTTGACCGTTAATTTTAACCAGA 57.429 32.000 7.44 0.00 39.81 3.86
247 248 9.902196 ATAAGTTTGACCGTTAATTTTAACCAG 57.098 29.630 7.44 3.06 39.81 4.00
248 249 9.680315 CATAAGTTTGACCGTTAATTTTAACCA 57.320 29.630 7.44 0.00 39.81 3.67
249 250 9.681692 ACATAAGTTTGACCGTTAATTTTAACC 57.318 29.630 7.44 0.00 39.81 2.85
267 268 7.186804 CACACAAGTCTTTCGAAACATAAGTT 58.813 34.615 6.47 0.00 40.40 2.66
268 269 6.715464 CACACAAGTCTTTCGAAACATAAGT 58.285 36.000 6.47 0.80 0.00 2.24
269 270 5.621228 GCACACAAGTCTTTCGAAACATAAG 59.379 40.000 6.47 0.00 0.00 1.73
270 271 5.504994 GGCACACAAGTCTTTCGAAACATAA 60.505 40.000 6.47 0.00 0.00 1.90
271 272 4.024387 GGCACACAAGTCTTTCGAAACATA 60.024 41.667 6.47 0.00 0.00 2.29
272 273 3.243068 GGCACACAAGTCTTTCGAAACAT 60.243 43.478 6.47 0.00 0.00 2.71
273 274 2.096819 GGCACACAAGTCTTTCGAAACA 59.903 45.455 6.47 0.00 0.00 2.83
274 275 2.096819 TGGCACACAAGTCTTTCGAAAC 59.903 45.455 6.47 0.00 0.00 2.78
275 276 2.360844 TGGCACACAAGTCTTTCGAAA 58.639 42.857 10.71 10.71 0.00 3.46
276 277 2.031258 TGGCACACAAGTCTTTCGAA 57.969 45.000 0.00 0.00 0.00 3.71
277 278 3.770625 TGGCACACAAGTCTTTCGA 57.229 47.368 0.00 0.00 0.00 3.71
289 290 2.279851 CCTTCGACACGTGGCACA 60.280 61.111 23.63 3.62 0.00 4.57
290 291 3.041940 CCCTTCGACACGTGGCAC 61.042 66.667 23.63 7.79 0.00 5.01
291 292 3.542676 ACCCTTCGACACGTGGCA 61.543 61.111 23.63 5.76 0.00 4.92
292 293 3.041940 CACCCTTCGACACGTGGC 61.042 66.667 21.57 17.52 0.00 5.01
293 294 2.357034 CCACCCTTCGACACGTGG 60.357 66.667 21.57 9.01 39.85 4.94
294 295 0.944311 CTTCCACCCTTCGACACGTG 60.944 60.000 15.48 15.48 0.00 4.49
295 296 1.366366 CTTCCACCCTTCGACACGT 59.634 57.895 0.00 0.00 0.00 4.49
296 297 2.027625 GCTTCCACCCTTCGACACG 61.028 63.158 0.00 0.00 0.00 4.49
297 298 0.534203 TTGCTTCCACCCTTCGACAC 60.534 55.000 0.00 0.00 0.00 3.67
298 299 0.400213 ATTGCTTCCACCCTTCGACA 59.600 50.000 0.00 0.00 0.00 4.35
299 300 2.396590 TATTGCTTCCACCCTTCGAC 57.603 50.000 0.00 0.00 0.00 4.20
300 301 4.163458 ACTTATATTGCTTCCACCCTTCGA 59.837 41.667 0.00 0.00 0.00 3.71
301 302 4.451900 ACTTATATTGCTTCCACCCTTCG 58.548 43.478 0.00 0.00 0.00 3.79
302 303 5.998363 CCTACTTATATTGCTTCCACCCTTC 59.002 44.000 0.00 0.00 0.00 3.46
303 304 5.163088 CCCTACTTATATTGCTTCCACCCTT 60.163 44.000 0.00 0.00 0.00 3.95
304 305 4.351111 CCCTACTTATATTGCTTCCACCCT 59.649 45.833 0.00 0.00 0.00 4.34
305 306 4.506802 CCCCTACTTATATTGCTTCCACCC 60.507 50.000 0.00 0.00 0.00 4.61
306 307 4.652822 CCCCTACTTATATTGCTTCCACC 58.347 47.826 0.00 0.00 0.00 4.61
307 308 4.072839 GCCCCTACTTATATTGCTTCCAC 58.927 47.826 0.00 0.00 0.00 4.02
308 309 3.073946 GGCCCCTACTTATATTGCTTCCA 59.926 47.826 0.00 0.00 0.00 3.53
309 310 3.330998 AGGCCCCTACTTATATTGCTTCC 59.669 47.826 0.00 0.00 0.00 3.46
310 311 4.327680 CAGGCCCCTACTTATATTGCTTC 58.672 47.826 0.00 0.00 0.00 3.86
311 312 3.498661 GCAGGCCCCTACTTATATTGCTT 60.499 47.826 0.00 0.00 0.00 3.91
312 313 2.040412 GCAGGCCCCTACTTATATTGCT 59.960 50.000 0.00 0.00 0.00 3.91
313 314 2.040412 AGCAGGCCCCTACTTATATTGC 59.960 50.000 0.00 0.00 0.00 3.56
314 315 3.617531 CGAGCAGGCCCCTACTTATATTG 60.618 52.174 0.00 0.00 0.00 1.90
315 316 2.567615 CGAGCAGGCCCCTACTTATATT 59.432 50.000 0.00 0.00 0.00 1.28
316 317 2.180276 CGAGCAGGCCCCTACTTATAT 58.820 52.381 0.00 0.00 0.00 0.86
317 318 1.629043 CGAGCAGGCCCCTACTTATA 58.371 55.000 0.00 0.00 0.00 0.98
318 319 1.122019 CCGAGCAGGCCCCTACTTAT 61.122 60.000 0.00 0.00 0.00 1.73
319 320 1.760875 CCGAGCAGGCCCCTACTTA 60.761 63.158 0.00 0.00 0.00 2.24
320 321 3.083997 CCGAGCAGGCCCCTACTT 61.084 66.667 0.00 0.00 0.00 2.24
321 322 4.075793 TCCGAGCAGGCCCCTACT 62.076 66.667 0.00 0.00 40.77 2.57
322 323 3.541713 CTCCGAGCAGGCCCCTAC 61.542 72.222 0.00 0.00 40.77 3.18
323 324 4.075793 ACTCCGAGCAGGCCCCTA 62.076 66.667 0.00 0.00 40.77 3.53
327 328 3.991536 GAACGACTCCGAGCAGGCC 62.992 68.421 0.00 0.00 40.77 5.19
328 329 2.507324 GAACGACTCCGAGCAGGC 60.507 66.667 0.00 0.00 40.77 4.85
329 330 2.182030 GGAACGACTCCGAGCAGG 59.818 66.667 0.00 0.00 42.97 4.85
342 343 1.519455 CGGAGTCATGGAGCGGAAC 60.519 63.158 0.00 0.00 0.00 3.62
343 344 2.892640 CGGAGTCATGGAGCGGAA 59.107 61.111 0.00 0.00 0.00 4.30
344 345 3.838271 GCGGAGTCATGGAGCGGA 61.838 66.667 0.00 0.00 0.00 5.54
345 346 3.781770 GAGCGGAGTCATGGAGCGG 62.782 68.421 0.00 0.00 0.00 5.52
346 347 2.279120 GAGCGGAGTCATGGAGCG 60.279 66.667 0.00 0.00 0.00 5.03
347 348 2.107953 GGAGCGGAGTCATGGAGC 59.892 66.667 0.00 0.00 0.00 4.70
348 349 2.818132 GGGAGCGGAGTCATGGAG 59.182 66.667 0.00 0.00 0.00 3.86
349 350 3.147595 CGGGAGCGGAGTCATGGA 61.148 66.667 0.00 0.00 0.00 3.41
350 351 4.227134 CCGGGAGCGGAGTCATGG 62.227 72.222 0.00 0.00 0.00 3.66
351 352 3.147595 TCCGGGAGCGGAGTCATG 61.148 66.667 0.00 0.00 33.62 3.07
374 375 2.577763 GATTTTCAACCGCGGCTCCG 62.578 60.000 28.58 11.51 43.09 4.63
375 376 1.136774 GATTTTCAACCGCGGCTCC 59.863 57.895 28.58 1.83 0.00 4.70
376 377 0.451783 ATGATTTTCAACCGCGGCTC 59.548 50.000 28.58 11.04 0.00 4.70
377 378 0.171007 CATGATTTTCAACCGCGGCT 59.829 50.000 28.58 11.40 0.00 5.52
378 379 0.801836 CCATGATTTTCAACCGCGGC 60.802 55.000 28.58 6.62 0.00 6.53
379 380 0.808125 TCCATGATTTTCAACCGCGG 59.192 50.000 26.86 26.86 0.00 6.46
380 381 1.202177 CCTCCATGATTTTCAACCGCG 60.202 52.381 0.00 0.00 0.00 6.46
381 382 2.091541 TCCTCCATGATTTTCAACCGC 58.908 47.619 0.00 0.00 0.00 5.68
382 383 2.684881 CCTCCTCCATGATTTTCAACCG 59.315 50.000 0.00 0.00 0.00 4.44
383 384 2.428530 GCCTCCTCCATGATTTTCAACC 59.571 50.000 0.00 0.00 0.00 3.77
384 385 3.091545 TGCCTCCTCCATGATTTTCAAC 58.908 45.455 0.00 0.00 0.00 3.18
385 386 3.454719 TGCCTCCTCCATGATTTTCAA 57.545 42.857 0.00 0.00 0.00 2.69
386 387 3.454719 TTGCCTCCTCCATGATTTTCA 57.545 42.857 0.00 0.00 0.00 2.69
387 388 5.829924 TCTATTTGCCTCCTCCATGATTTTC 59.170 40.000 0.00 0.00 0.00 2.29
388 389 5.769835 TCTATTTGCCTCCTCCATGATTTT 58.230 37.500 0.00 0.00 0.00 1.82
389 390 5.393068 TCTATTTGCCTCCTCCATGATTT 57.607 39.130 0.00 0.00 0.00 2.17
390 391 5.595814 ATCTATTTGCCTCCTCCATGATT 57.404 39.130 0.00 0.00 0.00 2.57
391 392 5.789575 AGTATCTATTTGCCTCCTCCATGAT 59.210 40.000 0.00 0.00 0.00 2.45
392 393 5.158141 AGTATCTATTTGCCTCCTCCATGA 58.842 41.667 0.00 0.00 0.00 3.07
393 394 5.486526 GAGTATCTATTTGCCTCCTCCATG 58.513 45.833 0.00 0.00 0.00 3.66
394 395 4.534103 GGAGTATCTATTTGCCTCCTCCAT 59.466 45.833 0.00 0.00 38.90 3.41
395 396 3.904339 GGAGTATCTATTTGCCTCCTCCA 59.096 47.826 0.00 0.00 38.90 3.86
396 397 3.056465 CGGAGTATCTATTTGCCTCCTCC 60.056 52.174 0.00 0.00 39.64 4.30
397 398 3.615351 GCGGAGTATCTATTTGCCTCCTC 60.615 52.174 0.00 0.00 39.64 3.71
398 399 2.300437 GCGGAGTATCTATTTGCCTCCT 59.700 50.000 0.00 0.00 39.64 3.69
399 400 2.037251 TGCGGAGTATCTATTTGCCTCC 59.963 50.000 0.00 0.00 38.65 4.30
400 401 3.005897 TCTGCGGAGTATCTATTTGCCTC 59.994 47.826 3.10 0.00 33.73 4.70
401 402 2.965831 TCTGCGGAGTATCTATTTGCCT 59.034 45.455 3.10 0.00 33.73 4.75
402 403 3.386768 TCTGCGGAGTATCTATTTGCC 57.613 47.619 3.10 0.00 33.73 4.52
403 404 3.929610 GGATCTGCGGAGTATCTATTTGC 59.070 47.826 3.10 0.00 33.73 3.68
404 405 5.398603 AGGATCTGCGGAGTATCTATTTG 57.601 43.478 3.10 0.00 33.73 2.32
405 406 5.305644 ACAAGGATCTGCGGAGTATCTATTT 59.694 40.000 3.10 1.14 33.73 1.40
406 407 4.835615 ACAAGGATCTGCGGAGTATCTATT 59.164 41.667 3.10 3.47 33.73 1.73
407 408 4.411927 ACAAGGATCTGCGGAGTATCTAT 58.588 43.478 3.10 0.00 33.73 1.98
408 409 3.833732 ACAAGGATCTGCGGAGTATCTA 58.166 45.455 3.10 0.00 33.73 1.98
409 410 2.672098 ACAAGGATCTGCGGAGTATCT 58.328 47.619 3.10 0.00 33.73 1.98
410 411 4.792521 ATACAAGGATCTGCGGAGTATC 57.207 45.455 3.10 5.88 0.00 2.24
411 412 5.552870 AAATACAAGGATCTGCGGAGTAT 57.447 39.130 3.10 0.00 0.00 2.12
412 413 5.353394 AAAATACAAGGATCTGCGGAGTA 57.647 39.130 3.10 0.00 0.00 2.59
413 414 3.914426 AAATACAAGGATCTGCGGAGT 57.086 42.857 3.10 0.00 0.00 3.85
414 415 5.116180 TGTAAAATACAAGGATCTGCGGAG 58.884 41.667 0.00 0.00 35.38 4.63
415 416 5.092554 TGTAAAATACAAGGATCTGCGGA 57.907 39.130 0.00 0.00 35.38 5.54
416 417 5.116180 TCTGTAAAATACAAGGATCTGCGG 58.884 41.667 0.00 0.00 38.38 5.69
417 418 5.277058 GCTCTGTAAAATACAAGGATCTGCG 60.277 44.000 0.00 0.00 38.38 5.18
418 419 5.819901 AGCTCTGTAAAATACAAGGATCTGC 59.180 40.000 0.00 0.00 38.38 4.26
419 420 7.010923 GTCAGCTCTGTAAAATACAAGGATCTG 59.989 40.741 0.00 5.15 38.38 2.90
420 421 7.044798 GTCAGCTCTGTAAAATACAAGGATCT 58.955 38.462 0.00 0.00 38.38 2.75
421 422 6.258947 GGTCAGCTCTGTAAAATACAAGGATC 59.741 42.308 0.00 0.00 38.38 3.36
422 423 6.116126 GGTCAGCTCTGTAAAATACAAGGAT 58.884 40.000 0.00 0.00 38.38 3.24
423 424 5.488341 GGTCAGCTCTGTAAAATACAAGGA 58.512 41.667 0.00 0.00 38.38 3.36
424 425 4.330074 CGGTCAGCTCTGTAAAATACAAGG 59.670 45.833 0.00 0.00 38.38 3.61
425 426 5.168569 TCGGTCAGCTCTGTAAAATACAAG 58.831 41.667 0.00 0.00 38.38 3.16
426 427 5.142061 TCGGTCAGCTCTGTAAAATACAA 57.858 39.130 0.00 0.00 38.38 2.41
427 428 4.794278 TCGGTCAGCTCTGTAAAATACA 57.206 40.909 0.00 0.00 37.13 2.29
428 429 5.502544 GCAATCGGTCAGCTCTGTAAAATAC 60.503 44.000 0.00 0.00 0.00 1.89
429 430 4.570772 GCAATCGGTCAGCTCTGTAAAATA 59.429 41.667 0.00 0.00 0.00 1.40
430 431 3.375299 GCAATCGGTCAGCTCTGTAAAAT 59.625 43.478 0.00 0.00 0.00 1.82
431 432 2.742053 GCAATCGGTCAGCTCTGTAAAA 59.258 45.455 0.00 0.00 0.00 1.52
432 433 2.346803 GCAATCGGTCAGCTCTGTAAA 58.653 47.619 0.00 0.00 0.00 2.01
433 434 1.405526 GGCAATCGGTCAGCTCTGTAA 60.406 52.381 0.00 0.00 0.00 2.41
434 435 0.175760 GGCAATCGGTCAGCTCTGTA 59.824 55.000 0.00 0.00 0.00 2.74
435 436 1.078848 GGCAATCGGTCAGCTCTGT 60.079 57.895 0.00 0.00 0.00 3.41
436 437 2.169789 CGGCAATCGGTCAGCTCTG 61.170 63.158 0.00 0.00 34.75 3.35
437 438 1.888436 TTCGGCAATCGGTCAGCTCT 61.888 55.000 0.00 0.00 39.77 4.09
438 439 1.447838 TTCGGCAATCGGTCAGCTC 60.448 57.895 0.00 0.00 39.77 4.09
439 440 1.741770 GTTCGGCAATCGGTCAGCT 60.742 57.895 0.00 0.00 39.77 4.24
440 441 1.970917 CTGTTCGGCAATCGGTCAGC 61.971 60.000 0.00 0.00 39.77 4.26
441 442 1.361668 CCTGTTCGGCAATCGGTCAG 61.362 60.000 0.00 0.00 39.77 3.51
442 443 1.375396 CCTGTTCGGCAATCGGTCA 60.375 57.895 0.00 0.00 39.77 4.02
443 444 0.108520 TACCTGTTCGGCAATCGGTC 60.109 55.000 0.00 0.00 39.77 4.79
444 445 0.108329 CTACCTGTTCGGCAATCGGT 60.108 55.000 0.00 0.00 39.77 4.69
445 446 0.108329 ACTACCTGTTCGGCAATCGG 60.108 55.000 0.00 0.00 39.77 4.18
446 447 2.572191 TACTACCTGTTCGGCAATCG 57.428 50.000 0.00 0.00 40.90 3.34
447 448 6.704493 TCATTAATACTACCTGTTCGGCAATC 59.296 38.462 0.00 0.00 35.61 2.67
448 449 6.588204 TCATTAATACTACCTGTTCGGCAAT 58.412 36.000 0.00 0.00 35.61 3.56
449 450 5.979993 TCATTAATACTACCTGTTCGGCAA 58.020 37.500 0.00 0.00 35.61 4.52
450 451 5.128171 ACTCATTAATACTACCTGTTCGGCA 59.872 40.000 0.00 0.00 35.61 5.69
451 452 5.462398 CACTCATTAATACTACCTGTTCGGC 59.538 44.000 0.00 0.00 35.61 5.54
452 453 6.802608 TCACTCATTAATACTACCTGTTCGG 58.197 40.000 0.00 0.00 39.35 4.30
453 454 6.918569 CCTCACTCATTAATACTACCTGTTCG 59.081 42.308 0.00 0.00 0.00 3.95
454 455 7.707035 CACCTCACTCATTAATACTACCTGTTC 59.293 40.741 0.00 0.00 0.00 3.18
455 456 7.180408 ACACCTCACTCATTAATACTACCTGTT 59.820 37.037 0.00 0.00 0.00 3.16
456 457 6.668283 ACACCTCACTCATTAATACTACCTGT 59.332 38.462 0.00 0.00 0.00 4.00
457 458 6.980978 CACACCTCACTCATTAATACTACCTG 59.019 42.308 0.00 0.00 0.00 4.00
458 459 6.407074 GCACACCTCACTCATTAATACTACCT 60.407 42.308 0.00 0.00 0.00 3.08
459 460 5.753921 GCACACCTCACTCATTAATACTACC 59.246 44.000 0.00 0.00 0.00 3.18
460 461 5.753921 GGCACACCTCACTCATTAATACTAC 59.246 44.000 0.00 0.00 0.00 2.73
461 462 5.661312 AGGCACACCTCACTCATTAATACTA 59.339 40.000 0.00 0.00 46.34 1.82
462 463 4.471386 AGGCACACCTCACTCATTAATACT 59.529 41.667 0.00 0.00 46.34 2.12
463 464 4.770795 AGGCACACCTCACTCATTAATAC 58.229 43.478 0.00 0.00 46.34 1.89
474 475 8.605350 ATCTCAGAAAGAAAAGGCACACCTCA 62.605 42.308 0.00 0.00 41.23 3.86
504 505 5.653330 TGATACACCGTTAGATACACCTCAA 59.347 40.000 0.00 0.00 0.00 3.02
980 984 3.003394 TGCGGAGGATGTCAATTGATT 57.997 42.857 12.12 2.31 0.00 2.57
1442 1468 0.389166 CAGGTCGTTGTCCAGCTCTC 60.389 60.000 0.00 0.00 0.00 3.20
1558 1614 4.496341 CGATGAGTAAAGGCATGCGAAAAT 60.496 41.667 12.44 0.00 0.00 1.82
1827 9579 5.819379 GCTGTGAAATGTTGAGAGATGGATA 59.181 40.000 0.00 0.00 0.00 2.59
1849 9604 3.181446 GGCTCTCTCTTCCATATTTGGCT 60.181 47.826 0.00 0.00 43.29 4.75
2059 9832 6.041296 GCAAATGGATAATGGAGATGGAAGTT 59.959 38.462 0.00 0.00 0.00 2.66
2217 12697 8.961294 AAAGGAAAATTGATGTGATTTGAACA 57.039 26.923 0.00 0.00 0.00 3.18
2281 13090 2.264109 ACAGCGTAGAACAGTGATCG 57.736 50.000 0.00 0.00 0.00 3.69
2404 13245 7.847096 TCTTCCACAACAGACAATAGCTATTA 58.153 34.615 18.45 0.00 0.00 0.98
2418 13261 1.228245 GCAGGGCTCTTCCACAACA 60.228 57.895 0.00 0.00 36.21 3.33
2479 13323 0.323087 AAACACAATAGGTCGGGCCC 60.323 55.000 13.57 13.57 38.26 5.80
2484 13330 5.103000 CCTGACTAGAAACACAATAGGTCG 58.897 45.833 0.00 0.00 0.00 4.79
2485 13331 6.038997 ACCTGACTAGAAACACAATAGGTC 57.961 41.667 0.00 0.00 30.66 3.85
2594 13606 5.244626 CACAATTCACAGGGGAGAAAAGATT 59.755 40.000 0.00 0.00 0.00 2.40
2754 13793 6.384258 TCGATTGGTTTCAACTTCAAATGA 57.616 33.333 0.00 0.00 35.48 2.57
2755 13794 7.642071 ATTCGATTGGTTTCAACTTCAAATG 57.358 32.000 0.00 0.00 35.48 2.32
2759 13802 9.190858 CAATTTATTCGATTGGTTTCAACTTCA 57.809 29.630 0.00 0.00 35.48 3.02
2805 13851 3.604582 CCTCACTTCCAGAAGACATTCC 58.395 50.000 14.19 0.00 40.79 3.01
2817 13863 1.066071 GCAAGTAGACCCCTCACTTCC 60.066 57.143 0.00 0.00 30.20 3.46
2893 13995 2.994957 AGAGGTGGGTACTGTGTAGT 57.005 50.000 0.00 0.00 40.99 2.73
2894 13996 4.342359 ACTAAGAGGTGGGTACTGTGTAG 58.658 47.826 0.00 0.00 0.00 2.74
2895 13997 4.393239 ACTAAGAGGTGGGTACTGTGTA 57.607 45.455 0.00 0.00 0.00 2.90
2896 13998 3.255634 ACTAAGAGGTGGGTACTGTGT 57.744 47.619 0.00 0.00 0.00 3.72
2897 13999 3.367087 CGAACTAAGAGGTGGGTACTGTG 60.367 52.174 0.00 0.00 0.00 3.66
2898 14000 2.824341 CGAACTAAGAGGTGGGTACTGT 59.176 50.000 0.00 0.00 0.00 3.55
2899 14001 2.416972 GCGAACTAAGAGGTGGGTACTG 60.417 54.545 0.00 0.00 0.00 2.74
2905 14007 2.376109 TCTAGGCGAACTAAGAGGTGG 58.624 52.381 0.00 0.00 0.00 4.61
2919 14021 4.951094 AGAATCGTAGTGGGATATCTAGGC 59.049 45.833 2.05 0.00 0.00 3.93
3048 14165 6.198966 GTCTCAACAAACAACCATTTCACATC 59.801 38.462 0.00 0.00 0.00 3.06
3134 14256 7.727578 TGTAAAATAGCATAGATATCCCCGA 57.272 36.000 0.00 0.00 0.00 5.14
3339 14567 0.549950 AGTATCTTCGGACGGAGGGA 59.450 55.000 0.00 0.00 0.00 4.20
3340 14568 1.067212 CAAGTATCTTCGGACGGAGGG 59.933 57.143 0.00 0.00 0.00 4.30
3341 14569 1.749634 ACAAGTATCTTCGGACGGAGG 59.250 52.381 0.00 0.00 0.00 4.30
3342 14570 2.539142 CGACAAGTATCTTCGGACGGAG 60.539 54.545 0.00 0.00 0.00 4.63
3343 14571 1.399440 CGACAAGTATCTTCGGACGGA 59.601 52.381 0.00 0.00 0.00 4.69
3344 14572 1.823828 CGACAAGTATCTTCGGACGG 58.176 55.000 0.00 0.00 0.00 4.79
3349 14577 3.777465 TTCCTCCGACAAGTATCTTCG 57.223 47.619 0.00 0.00 0.00 3.79
3350 14578 4.099573 TCCATTCCTCCGACAAGTATCTTC 59.900 45.833 0.00 0.00 0.00 2.87
3351 14579 4.030913 TCCATTCCTCCGACAAGTATCTT 58.969 43.478 0.00 0.00 0.00 2.40
3352 14580 3.643237 TCCATTCCTCCGACAAGTATCT 58.357 45.455 0.00 0.00 0.00 1.98
3353 14581 4.202264 ACATCCATTCCTCCGACAAGTATC 60.202 45.833 0.00 0.00 0.00 2.24
3354 14582 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
3355 14583 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
3356 14584 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
3357 14585 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
3358 14586 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
3359 14587 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
3360 14588 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
3361 14589 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
3362 14590 5.680922 GCATCTAGATACATCCATTCCTCCG 60.681 48.000 4.54 0.00 0.00 4.63
3363 14591 5.188555 TGCATCTAGATACATCCATTCCTCC 59.811 44.000 4.54 0.00 0.00 4.30
3364 14592 6.291648 TGCATCTAGATACATCCATTCCTC 57.708 41.667 4.54 0.00 0.00 3.71
3365 14593 6.692849 TTGCATCTAGATACATCCATTCCT 57.307 37.500 4.54 0.00 0.00 3.36
3366 14594 7.934855 AATTGCATCTAGATACATCCATTCC 57.065 36.000 4.54 0.00 0.00 3.01
3370 14598 9.494271 GAACTAAATTGCATCTAGATACATCCA 57.506 33.333 4.54 0.00 0.00 3.41
3371 14599 9.717942 AGAACTAAATTGCATCTAGATACATCC 57.282 33.333 4.54 0.00 0.00 3.51
3381 14609 9.717942 GGATGTATCTAGAACTAAATTGCATCT 57.282 33.333 14.13 0.00 0.00 2.90
3382 14610 9.494271 TGGATGTATCTAGAACTAAATTGCATC 57.506 33.333 0.00 3.30 0.00 3.91
3384 14612 9.851686 AATGGATGTATCTAGAACTAAATTGCA 57.148 29.630 0.00 0.00 0.00 4.08
3392 14620 8.717717 TGGATGAAAATGGATGTATCTAGAACT 58.282 33.333 0.00 0.00 0.00 3.01
3393 14621 8.908786 TGGATGAAAATGGATGTATCTAGAAC 57.091 34.615 0.00 0.00 0.00 3.01
3398 14626 9.075678 GAGAAATGGATGAAAATGGATGTATCT 57.924 33.333 0.00 0.00 0.00 1.98
3399 14627 8.302438 GGAGAAATGGATGAAAATGGATGTATC 58.698 37.037 0.00 0.00 0.00 2.24
3400 14628 7.040201 CGGAGAAATGGATGAAAATGGATGTAT 60.040 37.037 0.00 0.00 0.00 2.29
3401 14629 6.262944 CGGAGAAATGGATGAAAATGGATGTA 59.737 38.462 0.00 0.00 0.00 2.29
3402 14630 5.068198 CGGAGAAATGGATGAAAATGGATGT 59.932 40.000 0.00 0.00 0.00 3.06
3403 14631 5.300034 TCGGAGAAATGGATGAAAATGGATG 59.700 40.000 0.00 0.00 0.00 3.51
3404 14632 5.300286 GTCGGAGAAATGGATGAAAATGGAT 59.700 40.000 0.00 0.00 39.69 3.41
3405 14633 4.640201 GTCGGAGAAATGGATGAAAATGGA 59.360 41.667 0.00 0.00 39.69 3.41
3406 14634 4.398988 TGTCGGAGAAATGGATGAAAATGG 59.601 41.667 0.00 0.00 39.69 3.16
3407 14635 5.565592 TGTCGGAGAAATGGATGAAAATG 57.434 39.130 0.00 0.00 39.69 2.32
3408 14636 5.711976 ACTTGTCGGAGAAATGGATGAAAAT 59.288 36.000 0.00 0.00 39.69 1.82
3409 14637 5.070001 ACTTGTCGGAGAAATGGATGAAAA 58.930 37.500 0.00 0.00 39.69 2.29
3410 14638 4.651778 ACTTGTCGGAGAAATGGATGAAA 58.348 39.130 0.00 0.00 39.69 2.69
3411 14639 4.286297 ACTTGTCGGAGAAATGGATGAA 57.714 40.909 0.00 0.00 39.69 2.57
3412 14640 3.981071 ACTTGTCGGAGAAATGGATGA 57.019 42.857 0.00 0.00 39.69 2.92
3413 14641 6.238484 GGAAATACTTGTCGGAGAAATGGATG 60.238 42.308 0.00 0.00 39.69 3.51
3414 14642 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
3415 14643 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
3416 14644 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
3417 14645 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
3418 14646 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
3419 14647 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
3420 14648 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
3421 14649 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
3422 14650 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3423 14651 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3424 14652 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3425 14653 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3426 14654 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3427 14655 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3428 14656 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3429 14657 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3430 14658 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3431 14659 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3432 14660 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3433 14661 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3434 14662 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
3435 14663 0.967380 GTTACTCCCTCCGTCCGGAA 60.967 60.000 5.23 0.00 44.66 4.30
3436 14664 1.379044 GTTACTCCCTCCGTCCGGA 60.379 63.158 0.00 0.00 42.90 5.14
3437 14665 1.379576 AGTTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
3438 14666 0.679002 TCAGTTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
3439 14667 1.777941 ATCAGTTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3440 14668 2.885894 CCTATCAGTTACTCCCTCCGTC 59.114 54.545 0.00 0.00 0.00 4.79
3441 14669 2.244252 ACCTATCAGTTACTCCCTCCGT 59.756 50.000 0.00 0.00 0.00 4.69
3442 14670 2.946785 ACCTATCAGTTACTCCCTCCG 58.053 52.381 0.00 0.00 0.00 4.63
3443 14671 5.894653 AGATACCTATCAGTTACTCCCTCC 58.105 45.833 0.00 0.00 35.17 4.30
3444 14672 6.786122 AGAGATACCTATCAGTTACTCCCTC 58.214 44.000 0.00 0.00 35.17 4.30
3445 14673 6.790177 AGAGATACCTATCAGTTACTCCCT 57.210 41.667 0.00 0.00 35.17 4.20
3446 14674 7.692172 ACTAGAGATACCTATCAGTTACTCCC 58.308 42.308 0.00 0.00 35.17 4.30
3447 14675 7.546667 CGACTAGAGATACCTATCAGTTACTCC 59.453 44.444 0.00 0.00 35.17 3.85
3448 14676 8.306038 TCGACTAGAGATACCTATCAGTTACTC 58.694 40.741 0.00 0.00 35.17 2.59
3449 14677 8.192743 TCGACTAGAGATACCTATCAGTTACT 57.807 38.462 0.00 0.00 35.17 2.24
3503 14732 8.546083 ACTAGTGATCAGGTAGAGAAATTGAT 57.454 34.615 15.86 0.00 0.00 2.57
3670 15021 8.818141 AACATGTTTATATACATCCGAGTCAG 57.182 34.615 4.92 0.00 36.64 3.51
3776 15127 8.693625 ACTGTCAAGAGTTAACAAGTACTTACT 58.306 33.333 8.04 8.15 38.39 2.24
3779 15130 9.310716 GTTACTGTCAAGAGTTAACAAGTACTT 57.689 33.333 8.61 1.12 0.00 2.24
3841 15196 5.891810 TTTTAAACTTTGCACGGCATTAC 57.108 34.783 0.00 0.00 38.76 1.89
3849 15204 4.754114 TGGATGCCATTTTAAACTTTGCAC 59.246 37.500 0.00 0.52 0.00 4.57
3887 15257 8.399425 ACGTTGTCAACTCATAAAACAACATTA 58.601 29.630 13.67 0.00 46.21 1.90
4028 16276 1.203523 GCCACAACACCAGAAAACACA 59.796 47.619 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.