Multiple sequence alignment - TraesCS3B01G478600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G478600 chr3B 100.000 2339 0 0 1 2339 727124090 727121752 0.000000e+00 4320.0
1 TraesCS3B01G478600 chr3B 96.852 1366 41 2 1 1364 161678847 161677482 0.000000e+00 2283.0
2 TraesCS3B01G478600 chr3B 96.569 1370 43 4 1 1366 772414833 772413464 0.000000e+00 2266.0
3 TraesCS3B01G478600 chr3B 96.494 1369 44 4 1 1366 571263364 571261997 0.000000e+00 2259.0
4 TraesCS3B01G478600 chr3B 94.000 50 2 1 1714 1762 779798863 779798814 8.960000e-10 75.0
5 TraesCS3B01G478600 chr2B 97.160 1373 35 4 1 1371 390803529 390802159 0.000000e+00 2316.0
6 TraesCS3B01G478600 chr2B 95.088 285 14 0 2055 2339 635200617 635200333 1.270000e-122 449.0
7 TraesCS3B01G478600 chr2B 89.503 362 19 6 1711 2055 635201798 635201439 7.670000e-120 440.0
8 TraesCS3B01G478600 chr1B 96.996 1365 38 3 1 1363 92336395 92337758 0.000000e+00 2290.0
9 TraesCS3B01G478600 chr1B 96.489 1367 43 5 1 1364 482480372 482481736 0.000000e+00 2254.0
10 TraesCS3B01G478600 chr5B 96.786 1369 42 2 1 1367 59780961 59779593 0.000000e+00 2283.0
11 TraesCS3B01G478600 chr5B 96.416 1367 46 3 1 1364 547493215 547491849 0.000000e+00 2250.0
12 TraesCS3B01G478600 chr5B 90.357 280 26 1 1361 1640 534164577 534164855 1.320000e-97 366.0
13 TraesCS3B01G478600 chr6B 96.713 1369 41 4 1 1367 257594371 257595737 0.000000e+00 2276.0
14 TraesCS3B01G478600 chr7A 89.236 641 53 8 1713 2339 733850504 733849866 0.000000e+00 787.0
15 TraesCS3B01G478600 chr7A 89.236 641 53 8 1713 2339 733862985 733862347 0.000000e+00 787.0
16 TraesCS3B01G478600 chr7A 89.080 641 54 8 1713 2339 733838003 733837365 0.000000e+00 782.0
17 TraesCS3B01G478600 chr7A 91.489 47 3 1 1705 1750 673982173 673982219 1.940000e-06 63.9
18 TraesCS3B01G478600 chr1D 87.410 278 26 4 1364 1640 206951757 206951488 6.280000e-81 311.0
19 TraesCS3B01G478600 chr3D 90.141 71 3 4 1650 1716 556892777 556892847 3.200000e-14 89.8
20 TraesCS3B01G478600 chr5D 93.617 47 1 2 1705 1750 216058044 216058089 4.170000e-08 69.4
21 TraesCS3B01G478600 chr3A 87.719 57 3 4 1707 1763 651156344 651156292 1.940000e-06 63.9
22 TraesCS3B01G478600 chr7D 87.037 54 5 2 1691 1744 73566708 73566759 2.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G478600 chr3B 727121752 727124090 2338 True 4320.0 4320 100.0000 1 2339 1 chr3B.!!$R3 2338
1 TraesCS3B01G478600 chr3B 161677482 161678847 1365 True 2283.0 2283 96.8520 1 1364 1 chr3B.!!$R1 1363
2 TraesCS3B01G478600 chr3B 772413464 772414833 1369 True 2266.0 2266 96.5690 1 1366 1 chr3B.!!$R4 1365
3 TraesCS3B01G478600 chr3B 571261997 571263364 1367 True 2259.0 2259 96.4940 1 1366 1 chr3B.!!$R2 1365
4 TraesCS3B01G478600 chr2B 390802159 390803529 1370 True 2316.0 2316 97.1600 1 1371 1 chr2B.!!$R1 1370
5 TraesCS3B01G478600 chr2B 635200333 635201798 1465 True 444.5 449 92.2955 1711 2339 2 chr2B.!!$R2 628
6 TraesCS3B01G478600 chr1B 92336395 92337758 1363 False 2290.0 2290 96.9960 1 1363 1 chr1B.!!$F1 1362
7 TraesCS3B01G478600 chr1B 482480372 482481736 1364 False 2254.0 2254 96.4890 1 1364 1 chr1B.!!$F2 1363
8 TraesCS3B01G478600 chr5B 59779593 59780961 1368 True 2283.0 2283 96.7860 1 1367 1 chr5B.!!$R1 1366
9 TraesCS3B01G478600 chr5B 547491849 547493215 1366 True 2250.0 2250 96.4160 1 1364 1 chr5B.!!$R2 1363
10 TraesCS3B01G478600 chr6B 257594371 257595737 1366 False 2276.0 2276 96.7130 1 1367 1 chr6B.!!$F1 1366
11 TraesCS3B01G478600 chr7A 733849866 733850504 638 True 787.0 787 89.2360 1713 2339 1 chr7A.!!$R2 626
12 TraesCS3B01G478600 chr7A 733862347 733862985 638 True 787.0 787 89.2360 1713 2339 1 chr7A.!!$R3 626
13 TraesCS3B01G478600 chr7A 733837365 733838003 638 True 782.0 782 89.0800 1713 2339 1 chr7A.!!$R1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 920 1.006758 TCACGACCTTCTCAGGGGTAT 59.993 52.381 0.0 0.0 46.01 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 3035 0.111832 TAGAGTCGGACACCAGTGGT 59.888 55.0 9.7 9.7 35.62 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 1.077429 CCTAAGGGAGGGCAGTTGC 60.077 63.158 0.00 0.00 42.39 4.17
203 204 1.772182 GAGTGCTTACGATCCCGATG 58.228 55.000 0.00 0.00 39.50 3.84
474 476 4.727507 ATAGACATGTGAAAGTCTCGCT 57.272 40.909 1.15 0.00 43.59 4.93
501 503 3.013327 TGCCTGCTCATCTGGGCT 61.013 61.111 3.35 0.00 44.36 5.19
705 707 4.041938 TGACATGATTGCCATATCAGCCTA 59.958 41.667 0.00 0.00 34.03 3.93
723 725 3.671716 CCTAGTACTTGTGGTGGGAAAC 58.328 50.000 0.00 0.00 0.00 2.78
724 726 3.071892 CCTAGTACTTGTGGTGGGAAACA 59.928 47.826 0.00 0.00 0.00 2.83
918 920 1.006758 TCACGACCTTCTCAGGGGTAT 59.993 52.381 0.00 0.00 46.01 2.73
923 926 3.309296 GACCTTCTCAGGGGTATGATCA 58.691 50.000 0.00 0.00 46.01 2.92
927 930 1.580658 TCTCAGGGGTATGATCAGGGT 59.419 52.381 0.09 0.00 0.00 4.34
963 966 1.737793 CAAAGGTAGGTTCATCGGTGC 59.262 52.381 0.00 0.00 0.00 5.01
1067 1072 2.286025 GGACGGGTTGTAATCGCATAAC 59.714 50.000 0.00 0.00 0.00 1.89
1127 1132 1.375098 GAAGGAGGACGATCGTCGGT 61.375 60.000 34.69 26.72 45.59 4.69
1206 1211 8.818141 TTTCTAGATTCGAGCATTGTAATAGG 57.182 34.615 0.00 0.00 0.00 2.57
1238 1243 2.522185 AGTTGCTCATGAACTTGCCAT 58.478 42.857 0.00 0.00 28.94 4.40
1384 1389 7.660030 AAAAGAGAGAATAGGGAGAGAGAAG 57.340 40.000 0.00 0.00 0.00 2.85
1385 1390 6.590656 AAGAGAGAATAGGGAGAGAGAAGA 57.409 41.667 0.00 0.00 0.00 2.87
1386 1391 6.590656 AGAGAGAATAGGGAGAGAGAAGAA 57.409 41.667 0.00 0.00 0.00 2.52
1387 1392 6.605119 AGAGAGAATAGGGAGAGAGAAGAAG 58.395 44.000 0.00 0.00 0.00 2.85
1388 1393 5.705400 AGAGAATAGGGAGAGAGAAGAAGG 58.295 45.833 0.00 0.00 0.00 3.46
1389 1394 4.814967 AGAATAGGGAGAGAGAAGAAGGG 58.185 47.826 0.00 0.00 0.00 3.95
1390 1395 4.234223 AGAATAGGGAGAGAGAAGAAGGGT 59.766 45.833 0.00 0.00 0.00 4.34
1391 1396 2.246091 AGGGAGAGAGAAGAAGGGTG 57.754 55.000 0.00 0.00 0.00 4.61
1392 1397 1.435168 AGGGAGAGAGAAGAAGGGTGT 59.565 52.381 0.00 0.00 0.00 4.16
1393 1398 1.552792 GGGAGAGAGAAGAAGGGTGTG 59.447 57.143 0.00 0.00 0.00 3.82
1394 1399 2.252714 GGAGAGAGAAGAAGGGTGTGT 58.747 52.381 0.00 0.00 0.00 3.72
1395 1400 2.028567 GGAGAGAGAAGAAGGGTGTGTG 60.029 54.545 0.00 0.00 0.00 3.82
1396 1401 2.630580 GAGAGAGAAGAAGGGTGTGTGT 59.369 50.000 0.00 0.00 0.00 3.72
1397 1402 3.827302 GAGAGAGAAGAAGGGTGTGTGTA 59.173 47.826 0.00 0.00 0.00 2.90
1398 1403 4.223953 AGAGAGAAGAAGGGTGTGTGTAA 58.776 43.478 0.00 0.00 0.00 2.41
1399 1404 4.841246 AGAGAGAAGAAGGGTGTGTGTAAT 59.159 41.667 0.00 0.00 0.00 1.89
1400 1405 5.308237 AGAGAGAAGAAGGGTGTGTGTAATT 59.692 40.000 0.00 0.00 0.00 1.40
1401 1406 5.941788 AGAGAAGAAGGGTGTGTGTAATTT 58.058 37.500 0.00 0.00 0.00 1.82
1402 1407 5.765182 AGAGAAGAAGGGTGTGTGTAATTTG 59.235 40.000 0.00 0.00 0.00 2.32
1403 1408 4.827284 AGAAGAAGGGTGTGTGTAATTTGG 59.173 41.667 0.00 0.00 0.00 3.28
1404 1409 2.890945 AGAAGGGTGTGTGTAATTTGGC 59.109 45.455 0.00 0.00 0.00 4.52
1405 1410 2.373335 AGGGTGTGTGTAATTTGGCA 57.627 45.000 0.00 0.00 0.00 4.92
1406 1411 2.238521 AGGGTGTGTGTAATTTGGCAG 58.761 47.619 0.00 0.00 0.00 4.85
1407 1412 2.158534 AGGGTGTGTGTAATTTGGCAGA 60.159 45.455 0.00 0.00 0.00 4.26
1408 1413 2.030274 GGGTGTGTGTAATTTGGCAGAC 60.030 50.000 0.00 0.00 0.00 3.51
1409 1414 2.350388 GGTGTGTGTAATTTGGCAGACG 60.350 50.000 0.00 0.00 32.43 4.18
1410 1415 1.876799 TGTGTGTAATTTGGCAGACGG 59.123 47.619 0.00 0.00 32.43 4.79
1411 1416 1.877443 GTGTGTAATTTGGCAGACGGT 59.123 47.619 0.00 0.00 0.00 4.83
1412 1417 2.095919 GTGTGTAATTTGGCAGACGGTC 60.096 50.000 0.00 0.00 0.00 4.79
1413 1418 1.127951 GTGTAATTTGGCAGACGGTCG 59.872 52.381 1.89 0.00 0.00 4.79
1414 1419 1.001068 TGTAATTTGGCAGACGGTCGA 59.999 47.619 1.89 0.00 0.00 4.20
1415 1420 2.070783 GTAATTTGGCAGACGGTCGAA 58.929 47.619 1.89 0.00 0.00 3.71
1416 1421 1.821216 AATTTGGCAGACGGTCGAAT 58.179 45.000 1.89 0.00 36.76 3.34
1417 1422 1.369625 ATTTGGCAGACGGTCGAATC 58.630 50.000 1.89 0.00 28.75 2.52
1418 1423 0.672401 TTTGGCAGACGGTCGAATCC 60.672 55.000 1.89 3.65 0.00 3.01
1419 1424 2.202892 GGCAGACGGTCGAATCCC 60.203 66.667 1.89 0.00 0.00 3.85
1420 1425 2.577059 GCAGACGGTCGAATCCCA 59.423 61.111 1.89 0.00 0.00 4.37
1421 1426 1.810030 GCAGACGGTCGAATCCCAC 60.810 63.158 1.89 0.00 0.00 4.61
1422 1427 1.589630 CAGACGGTCGAATCCCACA 59.410 57.895 1.89 0.00 0.00 4.17
1423 1428 0.037697 CAGACGGTCGAATCCCACAA 60.038 55.000 1.89 0.00 0.00 3.33
1424 1429 0.682852 AGACGGTCGAATCCCACAAA 59.317 50.000 1.89 0.00 0.00 2.83
1425 1430 1.278127 AGACGGTCGAATCCCACAAAT 59.722 47.619 1.89 0.00 0.00 2.32
1426 1431 2.498481 AGACGGTCGAATCCCACAAATA 59.502 45.455 1.89 0.00 0.00 1.40
1427 1432 3.134081 AGACGGTCGAATCCCACAAATAT 59.866 43.478 1.89 0.00 0.00 1.28
1428 1433 3.463944 ACGGTCGAATCCCACAAATATC 58.536 45.455 0.00 0.00 0.00 1.63
1429 1434 2.475111 CGGTCGAATCCCACAAATATCG 59.525 50.000 0.00 0.00 0.00 2.92
1430 1435 2.223377 GGTCGAATCCCACAAATATCGC 59.777 50.000 0.00 0.00 0.00 4.58
1431 1436 3.131396 GTCGAATCCCACAAATATCGCT 58.869 45.455 0.00 0.00 0.00 4.93
1432 1437 4.304110 GTCGAATCCCACAAATATCGCTA 58.696 43.478 0.00 0.00 0.00 4.26
1433 1438 4.929808 GTCGAATCCCACAAATATCGCTAT 59.070 41.667 0.00 0.00 0.00 2.97
1434 1439 4.929211 TCGAATCCCACAAATATCGCTATG 59.071 41.667 0.00 0.00 0.00 2.23
1435 1440 4.690748 CGAATCCCACAAATATCGCTATGT 59.309 41.667 0.00 0.00 0.00 2.29
1436 1441 5.867174 CGAATCCCACAAATATCGCTATGTA 59.133 40.000 0.00 0.00 0.00 2.29
1437 1442 6.183360 CGAATCCCACAAATATCGCTATGTAC 60.183 42.308 0.00 0.00 0.00 2.90
1438 1443 4.890088 TCCCACAAATATCGCTATGTACC 58.110 43.478 0.00 0.00 0.00 3.34
1439 1444 3.678072 CCCACAAATATCGCTATGTACCG 59.322 47.826 0.00 0.00 0.00 4.02
1440 1445 4.552355 CCACAAATATCGCTATGTACCGA 58.448 43.478 0.00 0.00 37.91 4.69
1441 1446 5.168569 CCACAAATATCGCTATGTACCGAT 58.831 41.667 9.25 9.25 45.18 4.18
1442 1447 6.327154 CCACAAATATCGCTATGTACCGATA 58.673 40.000 12.35 12.35 46.49 2.92
1443 1448 6.472486 CCACAAATATCGCTATGTACCGATAG 59.528 42.308 14.43 6.89 45.90 2.08
1444 1449 6.020599 CACAAATATCGCTATGTACCGATAGC 60.021 42.308 12.91 12.91 45.90 2.97
1445 1450 6.127703 ACAAATATCGCTATGTACCGATAGCT 60.128 38.462 18.11 7.52 45.95 3.32
1446 1451 6.452494 AATATCGCTATGTACCGATAGCTT 57.548 37.500 18.11 10.87 45.95 3.74
1447 1452 4.785511 ATCGCTATGTACCGATAGCTTT 57.214 40.909 18.11 7.07 45.95 3.51
1448 1453 4.579454 TCGCTATGTACCGATAGCTTTT 57.421 40.909 18.11 0.00 45.95 2.27
1449 1454 4.940463 TCGCTATGTACCGATAGCTTTTT 58.060 39.130 18.11 0.00 45.95 1.94
1450 1455 4.980434 TCGCTATGTACCGATAGCTTTTTC 59.020 41.667 18.11 0.00 45.95 2.29
1451 1456 4.743151 CGCTATGTACCGATAGCTTTTTCA 59.257 41.667 18.11 0.00 45.95 2.69
1452 1457 5.332355 CGCTATGTACCGATAGCTTTTTCAC 60.332 44.000 18.11 0.00 45.95 3.18
1453 1458 5.050295 GCTATGTACCGATAGCTTTTTCACC 60.050 44.000 14.83 0.00 45.08 4.02
1454 1459 3.255725 TGTACCGATAGCTTTTTCACCG 58.744 45.455 0.00 0.00 0.00 4.94
1455 1460 2.467566 ACCGATAGCTTTTTCACCGT 57.532 45.000 0.00 0.00 0.00 4.83
1456 1461 2.774687 ACCGATAGCTTTTTCACCGTT 58.225 42.857 0.00 0.00 0.00 4.44
1457 1462 2.482721 ACCGATAGCTTTTTCACCGTTG 59.517 45.455 0.00 0.00 0.00 4.10
1458 1463 2.482721 CCGATAGCTTTTTCACCGTTGT 59.517 45.455 0.00 0.00 0.00 3.32
1459 1464 3.680937 CCGATAGCTTTTTCACCGTTGTA 59.319 43.478 0.00 0.00 0.00 2.41
1460 1465 4.435121 CCGATAGCTTTTTCACCGTTGTAC 60.435 45.833 0.00 0.00 0.00 2.90
1461 1466 4.634991 GATAGCTTTTTCACCGTTGTACG 58.365 43.478 0.00 0.00 42.11 3.67
1462 1467 1.003223 AGCTTTTTCACCGTTGTACGC 60.003 47.619 0.00 0.00 40.91 4.42
1463 1468 1.003223 GCTTTTTCACCGTTGTACGCT 60.003 47.619 0.00 0.00 40.91 5.07
1464 1469 2.540157 GCTTTTTCACCGTTGTACGCTT 60.540 45.455 0.00 0.00 40.91 4.68
1465 1470 3.303263 GCTTTTTCACCGTTGTACGCTTA 60.303 43.478 0.00 0.00 40.91 3.09
1466 1471 4.451557 CTTTTTCACCGTTGTACGCTTAG 58.548 43.478 0.00 0.00 40.91 2.18
1467 1472 1.421382 TTCACCGTTGTACGCTTAGC 58.579 50.000 0.00 0.00 40.91 3.09
1468 1473 0.388907 TCACCGTTGTACGCTTAGCC 60.389 55.000 0.00 0.00 40.91 3.93
1469 1474 0.668096 CACCGTTGTACGCTTAGCCA 60.668 55.000 0.00 0.00 40.91 4.75
1470 1475 0.248289 ACCGTTGTACGCTTAGCCAT 59.752 50.000 0.00 0.00 40.91 4.40
1471 1476 0.928229 CCGTTGTACGCTTAGCCATC 59.072 55.000 0.00 0.00 40.91 3.51
1472 1477 1.635844 CGTTGTACGCTTAGCCATCA 58.364 50.000 0.00 0.00 33.65 3.07
1473 1478 1.323534 CGTTGTACGCTTAGCCATCAC 59.676 52.381 0.00 0.00 33.65 3.06
1474 1479 2.618053 GTTGTACGCTTAGCCATCACT 58.382 47.619 0.00 0.00 0.00 3.41
1475 1480 3.732774 CGTTGTACGCTTAGCCATCACTA 60.733 47.826 0.00 0.00 33.65 2.74
1476 1481 4.178540 GTTGTACGCTTAGCCATCACTAA 58.821 43.478 0.00 0.00 0.00 2.24
1477 1482 4.665833 TGTACGCTTAGCCATCACTAAT 57.334 40.909 0.00 0.00 31.90 1.73
1478 1483 5.018539 TGTACGCTTAGCCATCACTAATT 57.981 39.130 0.00 0.00 31.90 1.40
1479 1484 5.424757 TGTACGCTTAGCCATCACTAATTT 58.575 37.500 0.00 0.00 31.90 1.82
1480 1485 5.522460 TGTACGCTTAGCCATCACTAATTTC 59.478 40.000 0.00 0.00 31.90 2.17
1481 1486 3.877508 ACGCTTAGCCATCACTAATTTCC 59.122 43.478 0.00 0.00 31.90 3.13
1482 1487 3.251004 CGCTTAGCCATCACTAATTTCCC 59.749 47.826 0.00 0.00 31.90 3.97
1483 1488 3.251004 GCTTAGCCATCACTAATTTCCCG 59.749 47.826 0.00 0.00 31.90 5.14
1484 1489 4.451900 CTTAGCCATCACTAATTTCCCGT 58.548 43.478 0.00 0.00 31.90 5.28
1485 1490 3.366052 AGCCATCACTAATTTCCCGTT 57.634 42.857 0.00 0.00 0.00 4.44
1486 1491 3.697166 AGCCATCACTAATTTCCCGTTT 58.303 40.909 0.00 0.00 0.00 3.60
1487 1492 3.694566 AGCCATCACTAATTTCCCGTTTC 59.305 43.478 0.00 0.00 0.00 2.78
1488 1493 3.181490 GCCATCACTAATTTCCCGTTTCC 60.181 47.826 0.00 0.00 0.00 3.13
1489 1494 3.380320 CCATCACTAATTTCCCGTTTCCC 59.620 47.826 0.00 0.00 0.00 3.97
1490 1495 3.076079 TCACTAATTTCCCGTTTCCCC 57.924 47.619 0.00 0.00 0.00 4.81
1491 1496 2.645797 TCACTAATTTCCCGTTTCCCCT 59.354 45.455 0.00 0.00 0.00 4.79
1492 1497 3.014623 CACTAATTTCCCGTTTCCCCTC 58.985 50.000 0.00 0.00 0.00 4.30
1493 1498 2.025605 ACTAATTTCCCGTTTCCCCTCC 60.026 50.000 0.00 0.00 0.00 4.30
1494 1499 0.040646 AATTTCCCGTTTCCCCTCCC 59.959 55.000 0.00 0.00 0.00 4.30
1495 1500 1.143970 ATTTCCCGTTTCCCCTCCCA 61.144 55.000 0.00 0.00 0.00 4.37
1496 1501 1.361959 TTTCCCGTTTCCCCTCCCAA 61.362 55.000 0.00 0.00 0.00 4.12
1497 1502 2.035155 CCCGTTTCCCCTCCCAAC 59.965 66.667 0.00 0.00 0.00 3.77
1498 1503 2.535331 CCCGTTTCCCCTCCCAACT 61.535 63.158 0.00 0.00 0.00 3.16
1499 1504 1.303317 CCGTTTCCCCTCCCAACTG 60.303 63.158 0.00 0.00 0.00 3.16
1500 1505 1.971695 CGTTTCCCCTCCCAACTGC 60.972 63.158 0.00 0.00 0.00 4.40
1501 1506 1.460699 GTTTCCCCTCCCAACTGCT 59.539 57.895 0.00 0.00 0.00 4.24
1502 1507 0.178961 GTTTCCCCTCCCAACTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
1503 1508 0.560688 TTTCCCCTCCCAACTGCTTT 59.439 50.000 0.00 0.00 0.00 3.51
1504 1509 1.451449 TTCCCCTCCCAACTGCTTTA 58.549 50.000 0.00 0.00 0.00 1.85
1505 1510 1.681229 TCCCCTCCCAACTGCTTTAT 58.319 50.000 0.00 0.00 0.00 1.40
1506 1511 1.564348 TCCCCTCCCAACTGCTTTATC 59.436 52.381 0.00 0.00 0.00 1.75
1507 1512 1.410224 CCCCTCCCAACTGCTTTATCC 60.410 57.143 0.00 0.00 0.00 2.59
1508 1513 1.410224 CCCTCCCAACTGCTTTATCCC 60.410 57.143 0.00 0.00 0.00 3.85
1509 1514 1.284785 CCTCCCAACTGCTTTATCCCA 59.715 52.381 0.00 0.00 0.00 4.37
1510 1515 2.091665 CCTCCCAACTGCTTTATCCCAT 60.092 50.000 0.00 0.00 0.00 4.00
1511 1516 2.954318 CTCCCAACTGCTTTATCCCATG 59.046 50.000 0.00 0.00 0.00 3.66
1512 1517 2.580322 TCCCAACTGCTTTATCCCATGA 59.420 45.455 0.00 0.00 0.00 3.07
1513 1518 3.205056 TCCCAACTGCTTTATCCCATGAT 59.795 43.478 0.00 0.00 34.87 2.45
1514 1519 3.319972 CCCAACTGCTTTATCCCATGATG 59.680 47.826 0.00 0.00 32.18 3.07
1515 1520 3.243636 CCAACTGCTTTATCCCATGATGC 60.244 47.826 0.00 0.00 32.18 3.91
1516 1521 2.590821 ACTGCTTTATCCCATGATGCC 58.409 47.619 0.00 0.00 32.18 4.40
1517 1522 2.091720 ACTGCTTTATCCCATGATGCCA 60.092 45.455 0.00 0.00 32.18 4.92
1518 1523 2.557056 CTGCTTTATCCCATGATGCCAG 59.443 50.000 0.00 0.00 32.18 4.85
1519 1524 2.175284 TGCTTTATCCCATGATGCCAGA 59.825 45.455 0.00 0.00 32.18 3.86
1520 1525 3.181426 TGCTTTATCCCATGATGCCAGAT 60.181 43.478 0.00 0.00 32.18 2.90
1521 1526 3.830755 GCTTTATCCCATGATGCCAGATT 59.169 43.478 0.00 0.00 32.18 2.40
1522 1527 4.282703 GCTTTATCCCATGATGCCAGATTT 59.717 41.667 0.00 0.00 32.18 2.17
1523 1528 5.566230 GCTTTATCCCATGATGCCAGATTTC 60.566 44.000 0.00 0.00 32.18 2.17
1524 1529 2.369983 TCCCATGATGCCAGATTTCC 57.630 50.000 0.00 0.00 0.00 3.13
1525 1530 1.854939 TCCCATGATGCCAGATTTCCT 59.145 47.619 0.00 0.00 0.00 3.36
1526 1531 2.245546 TCCCATGATGCCAGATTTCCTT 59.754 45.455 0.00 0.00 0.00 3.36
1527 1532 3.036091 CCCATGATGCCAGATTTCCTTT 58.964 45.455 0.00 0.00 0.00 3.11
1528 1533 3.453353 CCCATGATGCCAGATTTCCTTTT 59.547 43.478 0.00 0.00 0.00 2.27
1529 1534 4.080751 CCCATGATGCCAGATTTCCTTTTT 60.081 41.667 0.00 0.00 0.00 1.94
1530 1535 5.129155 CCCATGATGCCAGATTTCCTTTTTA 59.871 40.000 0.00 0.00 0.00 1.52
1531 1536 6.278363 CCATGATGCCAGATTTCCTTTTTAG 58.722 40.000 0.00 0.00 0.00 1.85
1532 1537 6.097270 CCATGATGCCAGATTTCCTTTTTAGA 59.903 38.462 0.00 0.00 0.00 2.10
1533 1538 7.201974 CCATGATGCCAGATTTCCTTTTTAGAT 60.202 37.037 0.00 0.00 0.00 1.98
1534 1539 7.338800 TGATGCCAGATTTCCTTTTTAGATC 57.661 36.000 0.00 0.00 0.00 2.75
1535 1540 6.322201 TGATGCCAGATTTCCTTTTTAGATCC 59.678 38.462 0.00 0.00 0.00 3.36
1536 1541 5.831103 TGCCAGATTTCCTTTTTAGATCCT 58.169 37.500 0.00 0.00 0.00 3.24
1537 1542 6.969043 TGCCAGATTTCCTTTTTAGATCCTA 58.031 36.000 0.00 0.00 0.00 2.94
1538 1543 7.586349 TGCCAGATTTCCTTTTTAGATCCTAT 58.414 34.615 0.00 0.00 0.00 2.57
1539 1544 8.723365 TGCCAGATTTCCTTTTTAGATCCTATA 58.277 33.333 0.00 0.00 0.00 1.31
1540 1545 9.574516 GCCAGATTTCCTTTTTAGATCCTATAA 57.425 33.333 0.00 0.00 0.00 0.98
1547 1552 9.569122 TTCCTTTTTAGATCCTATAATTTCGGG 57.431 33.333 0.00 0.00 0.00 5.14
1548 1553 8.161425 TCCTTTTTAGATCCTATAATTTCGGGG 58.839 37.037 0.00 0.00 0.00 5.73
1549 1554 7.942894 CCTTTTTAGATCCTATAATTTCGGGGT 59.057 37.037 0.00 0.00 0.00 4.95
1550 1555 8.685838 TTTTTAGATCCTATAATTTCGGGGTG 57.314 34.615 0.00 0.00 0.00 4.61
1551 1556 4.287766 AGATCCTATAATTTCGGGGTGC 57.712 45.455 0.00 0.00 0.00 5.01
1552 1557 3.910627 AGATCCTATAATTTCGGGGTGCT 59.089 43.478 0.00 0.00 0.00 4.40
1553 1558 5.091552 AGATCCTATAATTTCGGGGTGCTA 58.908 41.667 0.00 0.00 0.00 3.49
1554 1559 4.612264 TCCTATAATTTCGGGGTGCTAC 57.388 45.455 0.00 0.00 0.00 3.58
1555 1560 3.968649 TCCTATAATTTCGGGGTGCTACA 59.031 43.478 0.00 0.00 0.00 2.74
1556 1561 4.039973 TCCTATAATTTCGGGGTGCTACAG 59.960 45.833 0.00 0.00 0.00 2.74
1557 1562 4.039973 CCTATAATTTCGGGGTGCTACAGA 59.960 45.833 0.00 0.00 0.00 3.41
1558 1563 4.706842 ATAATTTCGGGGTGCTACAGAT 57.293 40.909 0.00 0.00 0.00 2.90
1559 1564 2.332063 ATTTCGGGGTGCTACAGATG 57.668 50.000 0.00 0.00 0.00 2.90
1560 1565 1.271856 TTTCGGGGTGCTACAGATGA 58.728 50.000 0.00 0.00 0.00 2.92
1561 1566 0.824109 TTCGGGGTGCTACAGATGAG 59.176 55.000 0.00 0.00 0.00 2.90
1562 1567 0.033503 TCGGGGTGCTACAGATGAGA 60.034 55.000 0.00 0.00 0.00 3.27
1563 1568 0.824109 CGGGGTGCTACAGATGAGAA 59.176 55.000 0.00 0.00 0.00 2.87
1564 1569 1.207089 CGGGGTGCTACAGATGAGAAA 59.793 52.381 0.00 0.00 0.00 2.52
1565 1570 2.158900 CGGGGTGCTACAGATGAGAAAT 60.159 50.000 0.00 0.00 0.00 2.17
1566 1571 3.069586 CGGGGTGCTACAGATGAGAAATA 59.930 47.826 0.00 0.00 0.00 1.40
1567 1572 4.636249 GGGGTGCTACAGATGAGAAATAG 58.364 47.826 0.00 0.00 0.00 1.73
1568 1573 4.345257 GGGGTGCTACAGATGAGAAATAGA 59.655 45.833 0.00 0.00 0.00 1.98
1569 1574 5.293560 GGGTGCTACAGATGAGAAATAGAC 58.706 45.833 0.00 0.00 0.00 2.59
1570 1575 4.979197 GGTGCTACAGATGAGAAATAGACG 59.021 45.833 0.00 0.00 0.00 4.18
1571 1576 5.221067 GGTGCTACAGATGAGAAATAGACGA 60.221 44.000 0.00 0.00 0.00 4.20
1572 1577 6.442952 GTGCTACAGATGAGAAATAGACGAT 58.557 40.000 0.00 0.00 0.00 3.73
1573 1578 6.362016 GTGCTACAGATGAGAAATAGACGATG 59.638 42.308 0.00 0.00 0.00 3.84
1574 1579 6.039829 TGCTACAGATGAGAAATAGACGATGT 59.960 38.462 0.00 0.00 0.00 3.06
1575 1580 6.362016 GCTACAGATGAGAAATAGACGATGTG 59.638 42.308 0.00 0.00 0.00 3.21
1576 1581 6.214191 ACAGATGAGAAATAGACGATGTGT 57.786 37.500 0.00 0.00 0.00 3.72
1577 1582 6.634805 ACAGATGAGAAATAGACGATGTGTT 58.365 36.000 0.00 0.00 0.00 3.32
1578 1583 6.533012 ACAGATGAGAAATAGACGATGTGTTG 59.467 38.462 0.00 0.00 0.00 3.33
1579 1584 6.533012 CAGATGAGAAATAGACGATGTGTTGT 59.467 38.462 0.00 0.00 0.00 3.32
1580 1585 7.702348 CAGATGAGAAATAGACGATGTGTTGTA 59.298 37.037 0.00 0.00 0.00 2.41
1581 1586 7.918033 AGATGAGAAATAGACGATGTGTTGTAG 59.082 37.037 0.00 0.00 0.00 2.74
1582 1587 7.153217 TGAGAAATAGACGATGTGTTGTAGA 57.847 36.000 0.00 0.00 0.00 2.59
1583 1588 7.251281 TGAGAAATAGACGATGTGTTGTAGAG 58.749 38.462 0.00 0.00 0.00 2.43
1584 1589 6.565234 AGAAATAGACGATGTGTTGTAGAGG 58.435 40.000 0.00 0.00 0.00 3.69
1585 1590 5.916661 AATAGACGATGTGTTGTAGAGGT 57.083 39.130 0.00 0.00 0.00 3.85
1586 1591 3.851976 AGACGATGTGTTGTAGAGGTC 57.148 47.619 0.00 0.00 0.00 3.85
1587 1592 2.161808 AGACGATGTGTTGTAGAGGTCG 59.838 50.000 0.00 0.00 0.00 4.79
1588 1593 1.884579 ACGATGTGTTGTAGAGGTCGT 59.115 47.619 0.00 0.00 36.19 4.34
1589 1594 2.295349 ACGATGTGTTGTAGAGGTCGTT 59.705 45.455 0.00 0.00 37.54 3.85
1590 1595 3.243636 ACGATGTGTTGTAGAGGTCGTTT 60.244 43.478 0.00 0.00 37.54 3.60
1591 1596 3.739300 CGATGTGTTGTAGAGGTCGTTTT 59.261 43.478 0.00 0.00 0.00 2.43
1592 1597 4.210537 CGATGTGTTGTAGAGGTCGTTTTT 59.789 41.667 0.00 0.00 0.00 1.94
1593 1598 5.403166 CGATGTGTTGTAGAGGTCGTTTTTA 59.597 40.000 0.00 0.00 0.00 1.52
1594 1599 5.971895 TGTGTTGTAGAGGTCGTTTTTAC 57.028 39.130 0.00 0.00 0.00 2.01
1595 1600 5.663456 TGTGTTGTAGAGGTCGTTTTTACT 58.337 37.500 0.00 0.00 0.00 2.24
1596 1601 6.804677 TGTGTTGTAGAGGTCGTTTTTACTA 58.195 36.000 0.00 0.00 0.00 1.82
1597 1602 6.697019 TGTGTTGTAGAGGTCGTTTTTACTAC 59.303 38.462 0.00 0.00 0.00 2.73
1598 1603 6.697019 GTGTTGTAGAGGTCGTTTTTACTACA 59.303 38.462 0.00 0.00 38.48 2.74
1599 1604 6.919662 TGTTGTAGAGGTCGTTTTTACTACAG 59.080 38.462 0.00 0.00 40.30 2.74
1600 1605 6.639632 TGTAGAGGTCGTTTTTACTACAGT 57.360 37.500 0.00 0.00 36.42 3.55
1601 1606 6.672147 TGTAGAGGTCGTTTTTACTACAGTC 58.328 40.000 0.00 0.00 36.42 3.51
1602 1607 6.488006 TGTAGAGGTCGTTTTTACTACAGTCT 59.512 38.462 0.00 0.00 36.42 3.24
1603 1608 7.661437 TGTAGAGGTCGTTTTTACTACAGTCTA 59.339 37.037 0.00 0.00 36.42 2.59
1604 1609 7.700022 AGAGGTCGTTTTTACTACAGTCTAT 57.300 36.000 0.00 0.00 0.00 1.98
1605 1610 8.798859 AGAGGTCGTTTTTACTACAGTCTATA 57.201 34.615 0.00 0.00 0.00 1.31
1606 1611 8.891720 AGAGGTCGTTTTTACTACAGTCTATAG 58.108 37.037 0.00 0.00 0.00 1.31
1607 1612 8.572855 AGGTCGTTTTTACTACAGTCTATAGT 57.427 34.615 0.00 0.00 36.79 2.12
1608 1613 9.018582 AGGTCGTTTTTACTACAGTCTATAGTT 57.981 33.333 0.00 0.00 34.66 2.24
1609 1614 9.070149 GGTCGTTTTTACTACAGTCTATAGTTG 57.930 37.037 0.00 2.87 34.66 3.16
1610 1615 9.831737 GTCGTTTTTACTACAGTCTATAGTTGA 57.168 33.333 12.03 0.00 34.66 3.18
1611 1616 9.831737 TCGTTTTTACTACAGTCTATAGTTGAC 57.168 33.333 12.03 0.00 34.66 3.18
1612 1617 8.783251 CGTTTTTACTACAGTCTATAGTTGACG 58.217 37.037 12.03 0.00 39.24 4.35
1613 1618 9.617975 GTTTTTACTACAGTCTATAGTTGACGT 57.382 33.333 12.03 0.00 39.24 4.34
1614 1619 9.616634 TTTTTACTACAGTCTATAGTTGACGTG 57.383 33.333 0.00 2.89 39.24 4.49
1615 1620 5.814764 ACTACAGTCTATAGTTGACGTGG 57.185 43.478 0.00 6.01 39.24 4.94
1616 1621 5.494724 ACTACAGTCTATAGTTGACGTGGA 58.505 41.667 0.00 0.00 39.24 4.02
1617 1622 4.966965 ACAGTCTATAGTTGACGTGGAG 57.033 45.455 0.00 0.00 39.24 3.86
1618 1623 3.695060 ACAGTCTATAGTTGACGTGGAGG 59.305 47.826 0.00 0.00 39.24 4.30
1619 1624 3.945921 CAGTCTATAGTTGACGTGGAGGA 59.054 47.826 0.00 0.00 39.24 3.71
1620 1625 4.580995 CAGTCTATAGTTGACGTGGAGGAT 59.419 45.833 0.00 0.00 39.24 3.24
1621 1626 5.067936 CAGTCTATAGTTGACGTGGAGGATT 59.932 44.000 0.00 0.00 39.24 3.01
1622 1627 5.067936 AGTCTATAGTTGACGTGGAGGATTG 59.932 44.000 0.00 0.00 39.24 2.67
1623 1628 4.954202 TCTATAGTTGACGTGGAGGATTGT 59.046 41.667 0.00 0.00 0.00 2.71
1624 1629 2.930826 AGTTGACGTGGAGGATTGTT 57.069 45.000 0.00 0.00 0.00 2.83
1625 1630 2.494059 AGTTGACGTGGAGGATTGTTG 58.506 47.619 0.00 0.00 0.00 3.33
1626 1631 1.069227 GTTGACGTGGAGGATTGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
1627 1632 0.107643 TGACGTGGAGGATTGTTGCA 59.892 50.000 0.00 0.00 0.00 4.08
1628 1633 0.798776 GACGTGGAGGATTGTTGCAG 59.201 55.000 0.00 0.00 0.00 4.41
1629 1634 0.396435 ACGTGGAGGATTGTTGCAGA 59.604 50.000 0.00 0.00 0.00 4.26
1630 1635 0.798776 CGTGGAGGATTGTTGCAGAC 59.201 55.000 0.00 0.00 0.00 3.51
1631 1636 1.609061 CGTGGAGGATTGTTGCAGACT 60.609 52.381 0.00 0.00 0.00 3.24
1632 1637 2.079925 GTGGAGGATTGTTGCAGACTC 58.920 52.381 0.00 0.00 0.00 3.36
1633 1638 1.699083 TGGAGGATTGTTGCAGACTCA 59.301 47.619 0.00 0.00 0.00 3.41
1634 1639 2.106338 TGGAGGATTGTTGCAGACTCAA 59.894 45.455 0.00 0.00 0.00 3.02
1635 1640 2.746362 GGAGGATTGTTGCAGACTCAAG 59.254 50.000 0.00 0.00 0.00 3.02
1636 1641 2.746362 GAGGATTGTTGCAGACTCAAGG 59.254 50.000 0.00 0.00 0.00 3.61
1637 1642 2.107204 AGGATTGTTGCAGACTCAAGGT 59.893 45.455 0.00 0.00 0.00 3.50
1638 1643 2.227388 GGATTGTTGCAGACTCAAGGTG 59.773 50.000 0.00 0.00 0.00 4.00
1639 1644 2.418368 TTGTTGCAGACTCAAGGTGT 57.582 45.000 0.00 0.00 0.00 4.16
1640 1645 3.552132 TTGTTGCAGACTCAAGGTGTA 57.448 42.857 0.00 0.00 0.00 2.90
1641 1646 2.833794 TGTTGCAGACTCAAGGTGTAC 58.166 47.619 0.00 0.00 0.00 2.90
1642 1647 2.169561 TGTTGCAGACTCAAGGTGTACA 59.830 45.455 0.00 0.00 0.00 2.90
1643 1648 3.181455 TGTTGCAGACTCAAGGTGTACAT 60.181 43.478 0.00 0.00 0.00 2.29
1644 1649 3.044235 TGCAGACTCAAGGTGTACATG 57.956 47.619 0.00 0.00 0.00 3.21
1645 1650 1.734465 GCAGACTCAAGGTGTACATGC 59.266 52.381 0.00 0.00 0.00 4.06
1646 1651 2.350522 CAGACTCAAGGTGTACATGCC 58.649 52.381 0.00 0.00 0.00 4.40
1647 1652 1.279271 AGACTCAAGGTGTACATGCCC 59.721 52.381 0.00 0.00 0.00 5.36
1648 1653 1.279271 GACTCAAGGTGTACATGCCCT 59.721 52.381 0.00 0.00 0.00 5.19
1649 1654 2.500098 GACTCAAGGTGTACATGCCCTA 59.500 50.000 0.00 0.00 0.00 3.53
1650 1655 2.910319 ACTCAAGGTGTACATGCCCTAA 59.090 45.455 0.00 0.00 0.00 2.69
1651 1656 3.055094 ACTCAAGGTGTACATGCCCTAAG 60.055 47.826 0.00 5.47 0.00 2.18
1652 1657 2.238646 TCAAGGTGTACATGCCCTAAGG 59.761 50.000 0.00 0.00 0.00 2.69
1668 1673 4.273318 CCTAAGGGGAAAATCTGTGAAGG 58.727 47.826 0.00 0.00 37.23 3.46
1669 1674 2.907458 AGGGGAAAATCTGTGAAGGG 57.093 50.000 0.00 0.00 0.00 3.95
1670 1675 1.359130 AGGGGAAAATCTGTGAAGGGG 59.641 52.381 0.00 0.00 0.00 4.79
1671 1676 1.357761 GGGGAAAATCTGTGAAGGGGA 59.642 52.381 0.00 0.00 0.00 4.81
1672 1677 2.225267 GGGGAAAATCTGTGAAGGGGAA 60.225 50.000 0.00 0.00 0.00 3.97
1673 1678 3.506398 GGGAAAATCTGTGAAGGGGAAA 58.494 45.455 0.00 0.00 0.00 3.13
1674 1679 3.901222 GGGAAAATCTGTGAAGGGGAAAA 59.099 43.478 0.00 0.00 0.00 2.29
1675 1680 4.346709 GGGAAAATCTGTGAAGGGGAAAAA 59.653 41.667 0.00 0.00 0.00 1.94
1676 1681 5.013079 GGGAAAATCTGTGAAGGGGAAAAAT 59.987 40.000 0.00 0.00 0.00 1.82
1677 1682 5.934043 GGAAAATCTGTGAAGGGGAAAAATG 59.066 40.000 0.00 0.00 0.00 2.32
1678 1683 5.488262 AAATCTGTGAAGGGGAAAAATGG 57.512 39.130 0.00 0.00 0.00 3.16
1679 1684 3.893753 TCTGTGAAGGGGAAAAATGGA 57.106 42.857 0.00 0.00 0.00 3.41
1680 1685 4.191804 TCTGTGAAGGGGAAAAATGGAA 57.808 40.909 0.00 0.00 0.00 3.53
1681 1686 3.895041 TCTGTGAAGGGGAAAAATGGAAC 59.105 43.478 0.00 0.00 0.00 3.62
1695 1700 2.526304 TGGAACAGAAACGAGTGAGG 57.474 50.000 0.00 0.00 0.00 3.86
1696 1701 1.760613 TGGAACAGAAACGAGTGAGGT 59.239 47.619 0.00 0.00 0.00 3.85
1697 1702 2.169769 TGGAACAGAAACGAGTGAGGTT 59.830 45.455 0.00 0.00 0.00 3.50
1698 1703 2.544267 GGAACAGAAACGAGTGAGGTTG 59.456 50.000 0.00 0.00 0.00 3.77
1699 1704 1.583054 ACAGAAACGAGTGAGGTTGC 58.417 50.000 0.00 0.00 0.00 4.17
1700 1705 0.508641 CAGAAACGAGTGAGGTTGCG 59.491 55.000 0.00 0.00 0.00 4.85
1701 1706 0.104304 AGAAACGAGTGAGGTTGCGT 59.896 50.000 0.00 0.00 38.81 5.24
1702 1707 0.507358 GAAACGAGTGAGGTTGCGTC 59.493 55.000 0.00 0.00 35.74 5.19
1703 1708 0.878961 AAACGAGTGAGGTTGCGTCC 60.879 55.000 0.00 0.00 35.74 4.79
1704 1709 1.745320 AACGAGTGAGGTTGCGTCCT 61.745 55.000 0.00 0.00 40.97 3.85
1705 1710 1.006102 CGAGTGAGGTTGCGTCCTT 60.006 57.895 1.09 0.00 38.02 3.36
1706 1711 0.242825 CGAGTGAGGTTGCGTCCTTA 59.757 55.000 1.09 0.00 38.02 2.69
1707 1712 1.336517 CGAGTGAGGTTGCGTCCTTAA 60.337 52.381 1.09 0.00 38.02 1.85
1708 1713 2.762745 GAGTGAGGTTGCGTCCTTAAA 58.237 47.619 1.09 0.00 38.02 1.52
1709 1714 2.737252 GAGTGAGGTTGCGTCCTTAAAG 59.263 50.000 1.09 0.00 38.02 1.85
1710 1715 2.367567 AGTGAGGTTGCGTCCTTAAAGA 59.632 45.455 1.09 0.00 38.02 2.52
1711 1716 3.008049 AGTGAGGTTGCGTCCTTAAAGAT 59.992 43.478 1.09 0.00 38.02 2.40
1738 1743 3.294493 AAATGCCCGTGCGTTGCT 61.294 55.556 0.00 0.00 45.88 3.91
1776 1781 8.812513 ACCAGTTCATATGAATCAAAGAATGA 57.187 30.769 20.65 0.00 43.67 2.57
1823 1832 3.683365 TGAATTGCAGTGTGAGCTCTA 57.317 42.857 16.19 0.75 0.00 2.43
1835 1847 3.447586 TGTGAGCTCTAGACATGGGTTAC 59.552 47.826 16.19 0.00 0.00 2.50
1899 1920 5.857471 ATTATGCCAATGAGCTAGCAAAA 57.143 34.783 18.83 1.54 38.99 2.44
1912 1933 7.112122 TGAGCTAGCAAAATGATTTCTAAGGA 58.888 34.615 18.83 0.00 0.00 3.36
1913 1934 7.611467 TGAGCTAGCAAAATGATTTCTAAGGAA 59.389 33.333 18.83 0.00 0.00 3.36
1952 1973 2.620251 TGAGATCGGGGCAAATGTAG 57.380 50.000 0.00 0.00 0.00 2.74
1997 2018 3.944055 AGCTGAGTTTGTCGTATCACT 57.056 42.857 0.00 0.00 0.00 3.41
2033 2055 1.131126 CACCCGATGACTTCAATGCAC 59.869 52.381 0.00 0.00 0.00 4.57
2063 2907 0.111639 ACCACCGGCTTACAAACCAT 59.888 50.000 0.00 0.00 0.00 3.55
2087 2931 4.074259 CAAGGATGACATGAAGACACCAA 58.926 43.478 0.00 0.00 0.00 3.67
2191 3035 4.361420 CACAATTGTTGATGCTCACACAA 58.639 39.130 8.77 11.85 34.50 3.33
2196 3040 1.949525 GTTGATGCTCACACAACCACT 59.050 47.619 0.00 0.00 38.20 4.00
2199 3043 0.183492 ATGCTCACACAACCACTGGT 59.817 50.000 0.00 0.00 37.65 4.00
2211 3055 0.811915 CCACTGGTGTCCGACTCTAG 59.188 60.000 11.23 11.23 0.00 2.43
2227 3071 0.462759 CTAGCGCTAGGGCTGCTTTT 60.463 55.000 36.71 17.48 44.50 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.641577 CTACCTTCCGTAGCAACTGC 58.358 55.000 0.00 0.00 38.23 4.40
93 94 4.386867 TCAAATCTGCTACCTTCCGTAG 57.613 45.455 0.00 0.00 46.36 3.51
203 204 2.212652 TCTGGCATATCATGTTGCGAC 58.787 47.619 0.00 0.00 39.78 5.19
307 308 3.064820 CCCATTGGTATGTCGTAACTTGC 59.935 47.826 1.20 0.00 0.00 4.01
474 476 1.055849 TGAGCAGGCAGGACACTTAA 58.944 50.000 0.00 0.00 0.00 1.85
705 707 2.743838 CGTGTTTCCCACCACAAGTACT 60.744 50.000 0.00 0.00 41.26 2.73
723 725 3.894920 TCATTGTGTACCAATTTGCGTG 58.105 40.909 6.79 0.00 41.93 5.34
724 726 3.818210 TCTCATTGTGTACCAATTTGCGT 59.182 39.130 6.79 0.00 41.93 5.24
918 920 5.721480 TCATCTCTTAAGACAACCCTGATCA 59.279 40.000 0.00 0.00 33.32 2.92
923 926 5.825593 TTGTCATCTCTTAAGACAACCCT 57.174 39.130 0.00 0.00 44.60 4.34
927 930 7.016268 ACCTACCTTTGTCATCTCTTAAGACAA 59.984 37.037 0.00 2.12 46.90 3.18
963 966 3.206150 CCAGTCAATCTTACCATTCCCG 58.794 50.000 0.00 0.00 0.00 5.14
1067 1072 8.967918 TCACCTCCATATTATCCGAGTTAATAG 58.032 37.037 0.00 0.00 0.00 1.73
1238 1243 8.030692 CAGAAATGAATGAAAATCTAGCCAACA 58.969 33.333 0.00 0.00 0.00 3.33
1371 1376 2.655407 ACACCCTTCTTCTCTCTCCCTA 59.345 50.000 0.00 0.00 0.00 3.53
1372 1377 1.435168 ACACCCTTCTTCTCTCTCCCT 59.565 52.381 0.00 0.00 0.00 4.20
1373 1378 1.552792 CACACCCTTCTTCTCTCTCCC 59.447 57.143 0.00 0.00 0.00 4.30
1374 1379 2.028567 CACACACCCTTCTTCTCTCTCC 60.029 54.545 0.00 0.00 0.00 3.71
1375 1380 2.630580 ACACACACCCTTCTTCTCTCTC 59.369 50.000 0.00 0.00 0.00 3.20
1376 1381 2.683768 ACACACACCCTTCTTCTCTCT 58.316 47.619 0.00 0.00 0.00 3.10
1377 1382 4.602340 TTACACACACCCTTCTTCTCTC 57.398 45.455 0.00 0.00 0.00 3.20
1378 1383 5.568620 AATTACACACACCCTTCTTCTCT 57.431 39.130 0.00 0.00 0.00 3.10
1379 1384 5.048713 CCAAATTACACACACCCTTCTTCTC 60.049 44.000 0.00 0.00 0.00 2.87
1380 1385 4.827284 CCAAATTACACACACCCTTCTTCT 59.173 41.667 0.00 0.00 0.00 2.85
1381 1386 4.558697 GCCAAATTACACACACCCTTCTTC 60.559 45.833 0.00 0.00 0.00 2.87
1382 1387 3.320826 GCCAAATTACACACACCCTTCTT 59.679 43.478 0.00 0.00 0.00 2.52
1383 1388 2.890945 GCCAAATTACACACACCCTTCT 59.109 45.455 0.00 0.00 0.00 2.85
1384 1389 2.625790 TGCCAAATTACACACACCCTTC 59.374 45.455 0.00 0.00 0.00 3.46
1385 1390 2.627699 CTGCCAAATTACACACACCCTT 59.372 45.455 0.00 0.00 0.00 3.95
1386 1391 2.158534 TCTGCCAAATTACACACACCCT 60.159 45.455 0.00 0.00 0.00 4.34
1387 1392 2.030274 GTCTGCCAAATTACACACACCC 60.030 50.000 0.00 0.00 0.00 4.61
1388 1393 2.350388 CGTCTGCCAAATTACACACACC 60.350 50.000 0.00 0.00 0.00 4.16
1389 1394 2.350388 CCGTCTGCCAAATTACACACAC 60.350 50.000 0.00 0.00 0.00 3.82
1390 1395 1.876799 CCGTCTGCCAAATTACACACA 59.123 47.619 0.00 0.00 0.00 3.72
1391 1396 1.877443 ACCGTCTGCCAAATTACACAC 59.123 47.619 0.00 0.00 0.00 3.82
1392 1397 2.147958 GACCGTCTGCCAAATTACACA 58.852 47.619 0.00 0.00 0.00 3.72
1393 1398 1.127951 CGACCGTCTGCCAAATTACAC 59.872 52.381 0.00 0.00 0.00 2.90
1394 1399 1.001068 TCGACCGTCTGCCAAATTACA 59.999 47.619 0.00 0.00 0.00 2.41
1395 1400 1.717194 TCGACCGTCTGCCAAATTAC 58.283 50.000 0.00 0.00 0.00 1.89
1396 1401 2.459060 TTCGACCGTCTGCCAAATTA 57.541 45.000 0.00 0.00 0.00 1.40
1397 1402 1.737793 GATTCGACCGTCTGCCAAATT 59.262 47.619 0.00 0.00 0.00 1.82
1398 1403 1.369625 GATTCGACCGTCTGCCAAAT 58.630 50.000 0.00 0.00 0.00 2.32
1399 1404 0.672401 GGATTCGACCGTCTGCCAAA 60.672 55.000 0.00 0.00 0.00 3.28
1400 1405 1.079405 GGATTCGACCGTCTGCCAA 60.079 57.895 0.00 0.00 0.00 4.52
1401 1406 2.577059 GGATTCGACCGTCTGCCA 59.423 61.111 0.00 0.00 0.00 4.92
1402 1407 2.202892 GGGATTCGACCGTCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
1403 1408 1.810030 GTGGGATTCGACCGTCTGC 60.810 63.158 0.00 0.00 0.00 4.26
1404 1409 0.037697 TTGTGGGATTCGACCGTCTG 60.038 55.000 0.00 0.00 0.00 3.51
1405 1410 0.682852 TTTGTGGGATTCGACCGTCT 59.317 50.000 0.00 0.00 0.00 4.18
1406 1411 1.734163 ATTTGTGGGATTCGACCGTC 58.266 50.000 0.00 0.00 0.00 4.79
1407 1412 3.463944 GATATTTGTGGGATTCGACCGT 58.536 45.455 0.00 0.00 0.00 4.83
1408 1413 2.475111 CGATATTTGTGGGATTCGACCG 59.525 50.000 0.00 0.00 0.00 4.79
1409 1414 2.223377 GCGATATTTGTGGGATTCGACC 59.777 50.000 0.00 0.00 0.00 4.79
1410 1415 3.131396 AGCGATATTTGTGGGATTCGAC 58.869 45.455 0.00 0.00 0.00 4.20
1411 1416 3.469008 AGCGATATTTGTGGGATTCGA 57.531 42.857 0.00 0.00 0.00 3.71
1412 1417 4.690748 ACATAGCGATATTTGTGGGATTCG 59.309 41.667 0.00 0.00 0.00 3.34
1413 1418 6.092259 GGTACATAGCGATATTTGTGGGATTC 59.908 42.308 0.00 0.00 0.00 2.52
1414 1419 5.938125 GGTACATAGCGATATTTGTGGGATT 59.062 40.000 0.00 0.00 0.00 3.01
1415 1420 5.488341 GGTACATAGCGATATTTGTGGGAT 58.512 41.667 0.00 0.00 0.00 3.85
1416 1421 4.890088 GGTACATAGCGATATTTGTGGGA 58.110 43.478 0.00 0.00 0.00 4.37
1430 1435 5.175126 CGGTGAAAAAGCTATCGGTACATAG 59.825 44.000 0.00 0.00 0.00 2.23
1431 1436 5.045215 CGGTGAAAAAGCTATCGGTACATA 58.955 41.667 0.00 0.00 0.00 2.29
1432 1437 3.869246 CGGTGAAAAAGCTATCGGTACAT 59.131 43.478 0.00 0.00 0.00 2.29
1433 1438 3.255725 CGGTGAAAAAGCTATCGGTACA 58.744 45.455 0.00 0.00 0.00 2.90
1434 1439 3.256558 ACGGTGAAAAAGCTATCGGTAC 58.743 45.455 0.00 0.00 0.00 3.34
1435 1440 3.598019 ACGGTGAAAAAGCTATCGGTA 57.402 42.857 0.00 0.00 0.00 4.02
1436 1441 2.467566 ACGGTGAAAAAGCTATCGGT 57.532 45.000 0.00 0.00 0.00 4.69
1437 1442 2.482721 ACAACGGTGAAAAAGCTATCGG 59.517 45.455 7.88 0.00 0.00 4.18
1438 1443 3.806316 ACAACGGTGAAAAAGCTATCG 57.194 42.857 7.88 0.00 0.00 2.92
1439 1444 4.634991 CGTACAACGGTGAAAAAGCTATC 58.365 43.478 7.88 0.00 38.08 2.08
1440 1445 3.120442 GCGTACAACGGTGAAAAAGCTAT 60.120 43.478 7.88 0.00 42.82 2.97
1441 1446 2.221517 GCGTACAACGGTGAAAAAGCTA 59.778 45.455 7.88 0.00 42.82 3.32
1442 1447 1.003223 GCGTACAACGGTGAAAAAGCT 60.003 47.619 7.88 0.00 42.82 3.74
1443 1448 1.391787 GCGTACAACGGTGAAAAAGC 58.608 50.000 7.88 2.14 42.82 3.51
1452 1457 0.928229 GATGGCTAAGCGTACAACGG 59.072 55.000 1.25 0.00 42.82 4.44
1453 1458 1.323534 GTGATGGCTAAGCGTACAACG 59.676 52.381 0.00 0.00 45.88 4.10
1454 1459 2.618053 AGTGATGGCTAAGCGTACAAC 58.382 47.619 0.00 0.00 0.00 3.32
1455 1460 4.459390 TTAGTGATGGCTAAGCGTACAA 57.541 40.909 0.00 0.00 0.00 2.41
1456 1461 4.665833 ATTAGTGATGGCTAAGCGTACA 57.334 40.909 0.00 0.00 34.83 2.90
1457 1462 5.050295 GGAAATTAGTGATGGCTAAGCGTAC 60.050 44.000 0.00 0.00 34.83 3.67
1458 1463 5.054477 GGAAATTAGTGATGGCTAAGCGTA 58.946 41.667 0.00 0.00 34.83 4.42
1459 1464 3.877508 GGAAATTAGTGATGGCTAAGCGT 59.122 43.478 0.00 0.00 34.83 5.07
1460 1465 3.251004 GGGAAATTAGTGATGGCTAAGCG 59.749 47.826 0.00 0.00 34.83 4.68
1461 1466 3.251004 CGGGAAATTAGTGATGGCTAAGC 59.749 47.826 0.00 0.00 34.83 3.09
1462 1467 4.451900 ACGGGAAATTAGTGATGGCTAAG 58.548 43.478 0.00 0.00 34.83 2.18
1463 1468 4.497291 ACGGGAAATTAGTGATGGCTAA 57.503 40.909 0.00 0.00 35.68 3.09
1464 1469 4.497291 AACGGGAAATTAGTGATGGCTA 57.503 40.909 0.00 0.00 0.00 3.93
1465 1470 3.366052 AACGGGAAATTAGTGATGGCT 57.634 42.857 0.00 0.00 0.00 4.75
1466 1471 3.181490 GGAAACGGGAAATTAGTGATGGC 60.181 47.826 0.00 0.00 0.00 4.40
1467 1472 3.380320 GGGAAACGGGAAATTAGTGATGG 59.620 47.826 0.00 0.00 0.00 3.51
1468 1473 3.380320 GGGGAAACGGGAAATTAGTGATG 59.620 47.826 0.00 0.00 0.00 3.07
1469 1474 3.268595 AGGGGAAACGGGAAATTAGTGAT 59.731 43.478 0.00 0.00 0.00 3.06
1470 1475 2.645797 AGGGGAAACGGGAAATTAGTGA 59.354 45.455 0.00 0.00 0.00 3.41
1471 1476 3.014623 GAGGGGAAACGGGAAATTAGTG 58.985 50.000 0.00 0.00 0.00 2.74
1472 1477 2.025605 GGAGGGGAAACGGGAAATTAGT 60.026 50.000 0.00 0.00 0.00 2.24
1473 1478 2.651455 GGAGGGGAAACGGGAAATTAG 58.349 52.381 0.00 0.00 0.00 1.73
1474 1479 1.285667 GGGAGGGGAAACGGGAAATTA 59.714 52.381 0.00 0.00 0.00 1.40
1475 1480 0.040646 GGGAGGGGAAACGGGAAATT 59.959 55.000 0.00 0.00 0.00 1.82
1476 1481 1.143970 TGGGAGGGGAAACGGGAAAT 61.144 55.000 0.00 0.00 0.00 2.17
1477 1482 1.361959 TTGGGAGGGGAAACGGGAAA 61.362 55.000 0.00 0.00 0.00 3.13
1478 1483 1.775046 TTGGGAGGGGAAACGGGAA 60.775 57.895 0.00 0.00 0.00 3.97
1479 1484 2.121872 TTGGGAGGGGAAACGGGA 60.122 61.111 0.00 0.00 0.00 5.14
1480 1485 2.035155 GTTGGGAGGGGAAACGGG 59.965 66.667 0.00 0.00 0.00 5.28
1481 1486 1.303317 CAGTTGGGAGGGGAAACGG 60.303 63.158 0.00 0.00 0.00 4.44
1482 1487 1.971695 GCAGTTGGGAGGGGAAACG 60.972 63.158 0.00 0.00 0.00 3.60
1483 1488 0.178961 AAGCAGTTGGGAGGGGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
1484 1489 0.560688 AAAGCAGTTGGGAGGGGAAA 59.439 50.000 0.00 0.00 0.00 3.13
1485 1490 1.451449 TAAAGCAGTTGGGAGGGGAA 58.549 50.000 0.00 0.00 0.00 3.97
1486 1491 1.564348 GATAAAGCAGTTGGGAGGGGA 59.436 52.381 0.00 0.00 0.00 4.81
1487 1492 1.410224 GGATAAAGCAGTTGGGAGGGG 60.410 57.143 0.00 0.00 0.00 4.79
1488 1493 1.410224 GGGATAAAGCAGTTGGGAGGG 60.410 57.143 0.00 0.00 0.00 4.30
1489 1494 1.284785 TGGGATAAAGCAGTTGGGAGG 59.715 52.381 0.00 0.00 0.00 4.30
1490 1495 2.806945 TGGGATAAAGCAGTTGGGAG 57.193 50.000 0.00 0.00 0.00 4.30
1491 1496 2.580322 TCATGGGATAAAGCAGTTGGGA 59.420 45.455 0.00 0.00 0.00 4.37
1492 1497 3.017048 TCATGGGATAAAGCAGTTGGG 57.983 47.619 0.00 0.00 0.00 4.12
1493 1498 3.243636 GCATCATGGGATAAAGCAGTTGG 60.244 47.826 0.00 0.00 30.87 3.77
1494 1499 3.243636 GGCATCATGGGATAAAGCAGTTG 60.244 47.826 0.00 0.00 30.87 3.16
1495 1500 2.961062 GGCATCATGGGATAAAGCAGTT 59.039 45.455 0.00 0.00 30.87 3.16
1496 1501 2.091720 TGGCATCATGGGATAAAGCAGT 60.092 45.455 0.00 0.00 30.87 4.40
1497 1502 2.557056 CTGGCATCATGGGATAAAGCAG 59.443 50.000 0.00 0.00 30.87 4.24
1498 1503 2.175284 TCTGGCATCATGGGATAAAGCA 59.825 45.455 0.00 0.00 30.87 3.91
1499 1504 2.867624 TCTGGCATCATGGGATAAAGC 58.132 47.619 0.00 0.00 30.87 3.51
1500 1505 5.047519 GGAAATCTGGCATCATGGGATAAAG 60.048 44.000 0.00 0.00 30.87 1.85
1501 1506 4.834496 GGAAATCTGGCATCATGGGATAAA 59.166 41.667 0.00 0.00 30.87 1.40
1502 1507 4.106825 AGGAAATCTGGCATCATGGGATAA 59.893 41.667 0.00 0.00 30.87 1.75
1503 1508 3.659195 AGGAAATCTGGCATCATGGGATA 59.341 43.478 0.00 0.00 30.87 2.59
1504 1509 2.449730 AGGAAATCTGGCATCATGGGAT 59.550 45.455 0.00 0.00 0.00 3.85
1505 1510 1.854939 AGGAAATCTGGCATCATGGGA 59.145 47.619 0.00 0.00 0.00 4.37
1506 1511 2.376695 AGGAAATCTGGCATCATGGG 57.623 50.000 0.00 0.00 0.00 4.00
1507 1512 4.748277 AAAAGGAAATCTGGCATCATGG 57.252 40.909 0.00 0.00 0.00 3.66
1508 1513 7.104043 TCTAAAAAGGAAATCTGGCATCATG 57.896 36.000 0.00 0.00 0.00 3.07
1509 1514 7.015001 GGATCTAAAAAGGAAATCTGGCATCAT 59.985 37.037 0.00 0.00 0.00 2.45
1510 1515 6.322201 GGATCTAAAAAGGAAATCTGGCATCA 59.678 38.462 0.00 0.00 0.00 3.07
1511 1516 6.548993 AGGATCTAAAAAGGAAATCTGGCATC 59.451 38.462 0.00 0.00 0.00 3.91
1512 1517 6.438620 AGGATCTAAAAAGGAAATCTGGCAT 58.561 36.000 0.00 0.00 0.00 4.40
1513 1518 5.831103 AGGATCTAAAAAGGAAATCTGGCA 58.169 37.500 0.00 0.00 0.00 4.92
1514 1519 9.574516 TTATAGGATCTAAAAAGGAAATCTGGC 57.425 33.333 0.00 0.00 0.00 4.85
1521 1526 9.569122 CCCGAAATTATAGGATCTAAAAAGGAA 57.431 33.333 0.00 0.00 0.00 3.36
1522 1527 8.161425 CCCCGAAATTATAGGATCTAAAAAGGA 58.839 37.037 0.00 0.00 0.00 3.36
1523 1528 7.942894 ACCCCGAAATTATAGGATCTAAAAAGG 59.057 37.037 0.00 0.00 0.00 3.11
1524 1529 8.784043 CACCCCGAAATTATAGGATCTAAAAAG 58.216 37.037 0.00 0.00 0.00 2.27
1525 1530 7.229907 GCACCCCGAAATTATAGGATCTAAAAA 59.770 37.037 0.00 0.00 0.00 1.94
1526 1531 6.713450 GCACCCCGAAATTATAGGATCTAAAA 59.287 38.462 0.00 0.00 0.00 1.52
1527 1532 6.043938 AGCACCCCGAAATTATAGGATCTAAA 59.956 38.462 0.00 0.00 0.00 1.85
1528 1533 5.546499 AGCACCCCGAAATTATAGGATCTAA 59.454 40.000 0.00 0.00 0.00 2.10
1529 1534 5.091552 AGCACCCCGAAATTATAGGATCTA 58.908 41.667 0.00 0.00 0.00 1.98
1530 1535 3.910627 AGCACCCCGAAATTATAGGATCT 59.089 43.478 0.00 0.00 0.00 2.75
1531 1536 4.287766 AGCACCCCGAAATTATAGGATC 57.712 45.455 0.00 0.00 0.00 3.36
1532 1537 4.595781 TGTAGCACCCCGAAATTATAGGAT 59.404 41.667 0.00 0.00 0.00 3.24
1533 1538 3.968649 TGTAGCACCCCGAAATTATAGGA 59.031 43.478 0.00 0.00 0.00 2.94
1534 1539 4.039973 TCTGTAGCACCCCGAAATTATAGG 59.960 45.833 0.00 0.00 0.00 2.57
1535 1540 5.209818 TCTGTAGCACCCCGAAATTATAG 57.790 43.478 0.00 0.00 0.00 1.31
1536 1541 5.305902 TCATCTGTAGCACCCCGAAATTATA 59.694 40.000 0.00 0.00 0.00 0.98
1537 1542 4.102524 TCATCTGTAGCACCCCGAAATTAT 59.897 41.667 0.00 0.00 0.00 1.28
1538 1543 3.452990 TCATCTGTAGCACCCCGAAATTA 59.547 43.478 0.00 0.00 0.00 1.40
1539 1544 2.238646 TCATCTGTAGCACCCCGAAATT 59.761 45.455 0.00 0.00 0.00 1.82
1540 1545 1.837439 TCATCTGTAGCACCCCGAAAT 59.163 47.619 0.00 0.00 0.00 2.17
1541 1546 1.207089 CTCATCTGTAGCACCCCGAAA 59.793 52.381 0.00 0.00 0.00 3.46
1542 1547 0.824109 CTCATCTGTAGCACCCCGAA 59.176 55.000 0.00 0.00 0.00 4.30
1543 1548 0.033503 TCTCATCTGTAGCACCCCGA 60.034 55.000 0.00 0.00 0.00 5.14
1544 1549 0.824109 TTCTCATCTGTAGCACCCCG 59.176 55.000 0.00 0.00 0.00 5.73
1545 1550 3.567478 ATTTCTCATCTGTAGCACCCC 57.433 47.619 0.00 0.00 0.00 4.95
1546 1551 5.293560 GTCTATTTCTCATCTGTAGCACCC 58.706 45.833 0.00 0.00 0.00 4.61
1547 1552 4.979197 CGTCTATTTCTCATCTGTAGCACC 59.021 45.833 0.00 0.00 0.00 5.01
1548 1553 5.822278 TCGTCTATTTCTCATCTGTAGCAC 58.178 41.667 0.00 0.00 0.00 4.40
1549 1554 6.039829 ACATCGTCTATTTCTCATCTGTAGCA 59.960 38.462 0.00 0.00 0.00 3.49
1550 1555 6.362016 CACATCGTCTATTTCTCATCTGTAGC 59.638 42.308 0.00 0.00 0.00 3.58
1551 1556 7.421599 ACACATCGTCTATTTCTCATCTGTAG 58.578 38.462 0.00 0.00 0.00 2.74
1552 1557 7.334844 ACACATCGTCTATTTCTCATCTGTA 57.665 36.000 0.00 0.00 0.00 2.74
1553 1558 6.214191 ACACATCGTCTATTTCTCATCTGT 57.786 37.500 0.00 0.00 0.00 3.41
1554 1559 6.533012 ACAACACATCGTCTATTTCTCATCTG 59.467 38.462 0.00 0.00 0.00 2.90
1555 1560 6.634805 ACAACACATCGTCTATTTCTCATCT 58.365 36.000 0.00 0.00 0.00 2.90
1556 1561 6.893958 ACAACACATCGTCTATTTCTCATC 57.106 37.500 0.00 0.00 0.00 2.92
1557 1562 7.772166 TCTACAACACATCGTCTATTTCTCAT 58.228 34.615 0.00 0.00 0.00 2.90
1558 1563 7.153217 TCTACAACACATCGTCTATTTCTCA 57.847 36.000 0.00 0.00 0.00 3.27
1559 1564 6.693545 CCTCTACAACACATCGTCTATTTCTC 59.306 42.308 0.00 0.00 0.00 2.87
1560 1565 6.153000 ACCTCTACAACACATCGTCTATTTCT 59.847 38.462 0.00 0.00 0.00 2.52
1561 1566 6.331061 ACCTCTACAACACATCGTCTATTTC 58.669 40.000 0.00 0.00 0.00 2.17
1562 1567 6.282199 ACCTCTACAACACATCGTCTATTT 57.718 37.500 0.00 0.00 0.00 1.40
1563 1568 5.448768 CGACCTCTACAACACATCGTCTATT 60.449 44.000 0.00 0.00 0.00 1.73
1564 1569 4.035324 CGACCTCTACAACACATCGTCTAT 59.965 45.833 0.00 0.00 0.00 1.98
1565 1570 3.373130 CGACCTCTACAACACATCGTCTA 59.627 47.826 0.00 0.00 0.00 2.59
1566 1571 2.161808 CGACCTCTACAACACATCGTCT 59.838 50.000 0.00 0.00 0.00 4.18
1567 1572 2.095364 ACGACCTCTACAACACATCGTC 60.095 50.000 0.00 0.00 36.68 4.20
1568 1573 1.884579 ACGACCTCTACAACACATCGT 59.115 47.619 0.00 0.00 36.56 3.73
1569 1574 2.631418 ACGACCTCTACAACACATCG 57.369 50.000 0.00 0.00 0.00 3.84
1570 1575 5.668558 AAAAACGACCTCTACAACACATC 57.331 39.130 0.00 0.00 0.00 3.06
1571 1576 6.285990 AGTAAAAACGACCTCTACAACACAT 58.714 36.000 0.00 0.00 0.00 3.21
1572 1577 5.663456 AGTAAAAACGACCTCTACAACACA 58.337 37.500 0.00 0.00 0.00 3.72
1573 1578 6.697019 TGTAGTAAAAACGACCTCTACAACAC 59.303 38.462 0.00 0.00 36.10 3.32
1574 1579 6.804677 TGTAGTAAAAACGACCTCTACAACA 58.195 36.000 0.00 0.00 36.10 3.33
1575 1580 6.920210 ACTGTAGTAAAAACGACCTCTACAAC 59.080 38.462 0.00 0.00 37.74 3.32
1576 1581 7.013655 AGACTGTAGTAAAAACGACCTCTACAA 59.986 37.037 0.00 0.00 37.74 2.41
1577 1582 6.488006 AGACTGTAGTAAAAACGACCTCTACA 59.512 38.462 0.00 0.00 37.05 2.74
1578 1583 6.907741 AGACTGTAGTAAAAACGACCTCTAC 58.092 40.000 0.00 0.00 0.00 2.59
1579 1584 8.798859 ATAGACTGTAGTAAAAACGACCTCTA 57.201 34.615 0.00 0.00 0.00 2.43
1580 1585 7.700022 ATAGACTGTAGTAAAAACGACCTCT 57.300 36.000 0.00 0.00 0.00 3.69
1581 1586 8.672815 ACTATAGACTGTAGTAAAAACGACCTC 58.327 37.037 9.93 0.00 30.91 3.85
1582 1587 8.572855 ACTATAGACTGTAGTAAAAACGACCT 57.427 34.615 9.93 0.00 30.91 3.85
1583 1588 9.070149 CAACTATAGACTGTAGTAAAAACGACC 57.930 37.037 11.81 0.00 32.34 4.79
1584 1589 9.831737 TCAACTATAGACTGTAGTAAAAACGAC 57.168 33.333 11.81 0.00 32.34 4.34
1585 1590 9.831737 GTCAACTATAGACTGTAGTAAAAACGA 57.168 33.333 11.81 1.45 32.34 3.85
1586 1591 8.783251 CGTCAACTATAGACTGTAGTAAAAACG 58.217 37.037 11.81 13.70 32.34 3.60
1587 1592 9.617975 ACGTCAACTATAGACTGTAGTAAAAAC 57.382 33.333 11.81 7.48 32.34 2.43
1588 1593 9.616634 CACGTCAACTATAGACTGTAGTAAAAA 57.383 33.333 11.81 0.00 32.34 1.94
1589 1594 8.239314 CCACGTCAACTATAGACTGTAGTAAAA 58.761 37.037 11.81 0.00 32.34 1.52
1590 1595 7.607607 TCCACGTCAACTATAGACTGTAGTAAA 59.392 37.037 11.81 1.78 32.34 2.01
1591 1596 7.105588 TCCACGTCAACTATAGACTGTAGTAA 58.894 38.462 11.81 2.10 32.34 2.24
1592 1597 6.643388 TCCACGTCAACTATAGACTGTAGTA 58.357 40.000 11.81 0.00 32.34 1.82
1593 1598 5.494724 TCCACGTCAACTATAGACTGTAGT 58.505 41.667 6.78 6.09 33.98 2.73
1594 1599 5.007823 CCTCCACGTCAACTATAGACTGTAG 59.992 48.000 6.78 4.79 33.89 2.74
1595 1600 4.880120 CCTCCACGTCAACTATAGACTGTA 59.120 45.833 6.78 0.00 33.89 2.74
1596 1601 3.695060 CCTCCACGTCAACTATAGACTGT 59.305 47.826 6.78 0.00 33.89 3.55
1597 1602 3.945921 TCCTCCACGTCAACTATAGACTG 59.054 47.826 6.78 3.60 33.89 3.51
1598 1603 4.232188 TCCTCCACGTCAACTATAGACT 57.768 45.455 6.78 0.00 33.89 3.24
1599 1604 5.163540 ACAATCCTCCACGTCAACTATAGAC 60.164 44.000 6.78 0.00 0.00 2.59
1600 1605 4.954202 ACAATCCTCCACGTCAACTATAGA 59.046 41.667 6.78 0.00 0.00 1.98
1601 1606 5.263968 ACAATCCTCCACGTCAACTATAG 57.736 43.478 0.00 0.00 0.00 1.31
1602 1607 5.416083 CAACAATCCTCCACGTCAACTATA 58.584 41.667 0.00 0.00 0.00 1.31
1603 1608 4.253685 CAACAATCCTCCACGTCAACTAT 58.746 43.478 0.00 0.00 0.00 2.12
1604 1609 3.659786 CAACAATCCTCCACGTCAACTA 58.340 45.455 0.00 0.00 0.00 2.24
1605 1610 2.494059 CAACAATCCTCCACGTCAACT 58.506 47.619 0.00 0.00 0.00 3.16
1606 1611 1.069227 GCAACAATCCTCCACGTCAAC 60.069 52.381 0.00 0.00 0.00 3.18
1607 1612 1.234821 GCAACAATCCTCCACGTCAA 58.765 50.000 0.00 0.00 0.00 3.18
1608 1613 0.107643 TGCAACAATCCTCCACGTCA 59.892 50.000 0.00 0.00 0.00 4.35
1609 1614 0.798776 CTGCAACAATCCTCCACGTC 59.201 55.000 0.00 0.00 0.00 4.34
1610 1615 0.396435 TCTGCAACAATCCTCCACGT 59.604 50.000 0.00 0.00 0.00 4.49
1611 1616 0.798776 GTCTGCAACAATCCTCCACG 59.201 55.000 0.00 0.00 0.00 4.94
1612 1617 2.079925 GAGTCTGCAACAATCCTCCAC 58.920 52.381 0.00 0.00 0.00 4.02
1613 1618 1.699083 TGAGTCTGCAACAATCCTCCA 59.301 47.619 0.00 0.00 0.00 3.86
1614 1619 2.479566 TGAGTCTGCAACAATCCTCC 57.520 50.000 0.00 0.00 0.00 4.30
1615 1620 2.746362 CCTTGAGTCTGCAACAATCCTC 59.254 50.000 0.00 0.00 0.00 3.71
1616 1621 2.107204 ACCTTGAGTCTGCAACAATCCT 59.893 45.455 0.00 0.00 0.00 3.24
1617 1622 2.227388 CACCTTGAGTCTGCAACAATCC 59.773 50.000 0.00 0.00 0.00 3.01
1618 1623 2.880890 ACACCTTGAGTCTGCAACAATC 59.119 45.455 0.00 0.00 0.00 2.67
1619 1624 2.936202 ACACCTTGAGTCTGCAACAAT 58.064 42.857 0.00 0.00 0.00 2.71
1620 1625 2.418368 ACACCTTGAGTCTGCAACAA 57.582 45.000 0.00 0.00 0.00 2.83
1621 1626 2.169561 TGTACACCTTGAGTCTGCAACA 59.830 45.455 0.00 0.00 0.00 3.33
1622 1627 2.833794 TGTACACCTTGAGTCTGCAAC 58.166 47.619 0.00 0.00 0.00 4.17
1623 1628 3.402110 CATGTACACCTTGAGTCTGCAA 58.598 45.455 0.00 0.00 0.00 4.08
1624 1629 2.871637 GCATGTACACCTTGAGTCTGCA 60.872 50.000 0.00 0.00 0.00 4.41
1625 1630 1.734465 GCATGTACACCTTGAGTCTGC 59.266 52.381 0.00 0.00 0.00 4.26
1626 1631 2.350522 GGCATGTACACCTTGAGTCTG 58.649 52.381 0.00 0.00 0.00 3.51
1627 1632 1.279271 GGGCATGTACACCTTGAGTCT 59.721 52.381 0.00 0.00 0.00 3.24
1628 1633 1.279271 AGGGCATGTACACCTTGAGTC 59.721 52.381 0.00 0.00 0.00 3.36
1629 1634 1.362224 AGGGCATGTACACCTTGAGT 58.638 50.000 0.00 0.00 0.00 3.41
1630 1635 3.535561 CTTAGGGCATGTACACCTTGAG 58.464 50.000 8.67 1.13 35.84 3.02
1631 1636 2.238646 CCTTAGGGCATGTACACCTTGA 59.761 50.000 8.67 0.00 35.84 3.02
1632 1637 2.643551 CCTTAGGGCATGTACACCTTG 58.356 52.381 8.67 0.00 35.84 3.61
1633 1638 1.564348 CCCTTAGGGCATGTACACCTT 59.436 52.381 3.52 0.93 35.35 3.50
1634 1639 1.213296 CCCTTAGGGCATGTACACCT 58.787 55.000 3.52 8.44 35.35 4.00
1635 1640 3.800826 CCCTTAGGGCATGTACACC 57.199 57.895 3.52 0.00 35.35 4.16
1646 1651 4.273318 CCTTCACAGATTTTCCCCTTAGG 58.727 47.826 0.00 0.00 0.00 2.69
1647 1652 4.273318 CCCTTCACAGATTTTCCCCTTAG 58.727 47.826 0.00 0.00 0.00 2.18
1648 1653 3.011257 CCCCTTCACAGATTTTCCCCTTA 59.989 47.826 0.00 0.00 0.00 2.69
1649 1654 2.225369 CCCCTTCACAGATTTTCCCCTT 60.225 50.000 0.00 0.00 0.00 3.95
1650 1655 1.359130 CCCCTTCACAGATTTTCCCCT 59.641 52.381 0.00 0.00 0.00 4.79
1651 1656 1.357761 TCCCCTTCACAGATTTTCCCC 59.642 52.381 0.00 0.00 0.00 4.81
1652 1657 2.899303 TCCCCTTCACAGATTTTCCC 57.101 50.000 0.00 0.00 0.00 3.97
1653 1658 5.545063 TTTTTCCCCTTCACAGATTTTCC 57.455 39.130 0.00 0.00 0.00 3.13
1654 1659 5.934043 CCATTTTTCCCCTTCACAGATTTTC 59.066 40.000 0.00 0.00 0.00 2.29
1655 1660 5.606329 TCCATTTTTCCCCTTCACAGATTTT 59.394 36.000 0.00 0.00 0.00 1.82
1656 1661 5.154418 TCCATTTTTCCCCTTCACAGATTT 58.846 37.500 0.00 0.00 0.00 2.17
1657 1662 4.750941 TCCATTTTTCCCCTTCACAGATT 58.249 39.130 0.00 0.00 0.00 2.40
1658 1663 4.402616 TCCATTTTTCCCCTTCACAGAT 57.597 40.909 0.00 0.00 0.00 2.90
1659 1664 3.893753 TCCATTTTTCCCCTTCACAGA 57.106 42.857 0.00 0.00 0.00 3.41
1660 1665 3.640967 TGTTCCATTTTTCCCCTTCACAG 59.359 43.478 0.00 0.00 0.00 3.66
1661 1666 3.640967 CTGTTCCATTTTTCCCCTTCACA 59.359 43.478 0.00 0.00 0.00 3.58
1662 1667 3.895041 TCTGTTCCATTTTTCCCCTTCAC 59.105 43.478 0.00 0.00 0.00 3.18
1663 1668 4.191804 TCTGTTCCATTTTTCCCCTTCA 57.808 40.909 0.00 0.00 0.00 3.02
1664 1669 5.297547 GTTTCTGTTCCATTTTTCCCCTTC 58.702 41.667 0.00 0.00 0.00 3.46
1665 1670 4.202212 CGTTTCTGTTCCATTTTTCCCCTT 60.202 41.667 0.00 0.00 0.00 3.95
1666 1671 3.320826 CGTTTCTGTTCCATTTTTCCCCT 59.679 43.478 0.00 0.00 0.00 4.79
1667 1672 3.319689 TCGTTTCTGTTCCATTTTTCCCC 59.680 43.478 0.00 0.00 0.00 4.81
1668 1673 4.037565 ACTCGTTTCTGTTCCATTTTTCCC 59.962 41.667 0.00 0.00 0.00 3.97
1669 1674 4.976116 CACTCGTTTCTGTTCCATTTTTCC 59.024 41.667 0.00 0.00 0.00 3.13
1670 1675 5.816919 TCACTCGTTTCTGTTCCATTTTTC 58.183 37.500 0.00 0.00 0.00 2.29
1671 1676 5.221048 CCTCACTCGTTTCTGTTCCATTTTT 60.221 40.000 0.00 0.00 0.00 1.94
1672 1677 4.275936 CCTCACTCGTTTCTGTTCCATTTT 59.724 41.667 0.00 0.00 0.00 1.82
1673 1678 3.815401 CCTCACTCGTTTCTGTTCCATTT 59.185 43.478 0.00 0.00 0.00 2.32
1674 1679 3.181454 ACCTCACTCGTTTCTGTTCCATT 60.181 43.478 0.00 0.00 0.00 3.16
1675 1680 2.368875 ACCTCACTCGTTTCTGTTCCAT 59.631 45.455 0.00 0.00 0.00 3.41
1676 1681 1.760613 ACCTCACTCGTTTCTGTTCCA 59.239 47.619 0.00 0.00 0.00 3.53
1677 1682 2.528041 ACCTCACTCGTTTCTGTTCC 57.472 50.000 0.00 0.00 0.00 3.62
1678 1683 2.032808 GCAACCTCACTCGTTTCTGTTC 60.033 50.000 0.00 0.00 0.00 3.18
1679 1684 1.940613 GCAACCTCACTCGTTTCTGTT 59.059 47.619 0.00 0.00 0.00 3.16
1680 1685 1.583054 GCAACCTCACTCGTTTCTGT 58.417 50.000 0.00 0.00 0.00 3.41
1681 1686 0.508641 CGCAACCTCACTCGTTTCTG 59.491 55.000 0.00 0.00 0.00 3.02
1682 1687 0.104304 ACGCAACCTCACTCGTTTCT 59.896 50.000 0.00 0.00 0.00 2.52
1683 1688 0.507358 GACGCAACCTCACTCGTTTC 59.493 55.000 0.00 0.00 35.12 2.78
1684 1689 0.878961 GGACGCAACCTCACTCGTTT 60.879 55.000 0.00 0.00 35.12 3.60
1685 1690 1.300697 GGACGCAACCTCACTCGTT 60.301 57.895 0.00 0.00 35.12 3.85
1686 1691 1.745320 AAGGACGCAACCTCACTCGT 61.745 55.000 0.00 0.00 39.62 4.18
1687 1692 0.242825 TAAGGACGCAACCTCACTCG 59.757 55.000 0.00 0.00 39.62 4.18
1688 1693 2.450609 TTAAGGACGCAACCTCACTC 57.549 50.000 0.00 0.00 39.62 3.51
1689 1694 2.367567 TCTTTAAGGACGCAACCTCACT 59.632 45.455 0.00 0.00 39.62 3.41
1690 1695 2.762745 TCTTTAAGGACGCAACCTCAC 58.237 47.619 0.00 0.00 39.62 3.51
1691 1696 3.695830 ATCTTTAAGGACGCAACCTCA 57.304 42.857 0.00 0.00 39.62 3.86
1692 1697 5.176592 AGTTATCTTTAAGGACGCAACCTC 58.823 41.667 0.00 0.00 39.62 3.85
1693 1698 5.161943 AGTTATCTTTAAGGACGCAACCT 57.838 39.130 0.00 0.00 42.69 3.50
1694 1699 5.006455 GCTAGTTATCTTTAAGGACGCAACC 59.994 44.000 0.00 0.00 0.00 3.77
1695 1700 5.579511 TGCTAGTTATCTTTAAGGACGCAAC 59.420 40.000 0.00 0.00 0.00 4.17
1696 1701 5.579511 GTGCTAGTTATCTTTAAGGACGCAA 59.420 40.000 0.00 0.00 0.00 4.85
1697 1702 5.107133 GTGCTAGTTATCTTTAAGGACGCA 58.893 41.667 0.00 0.00 0.00 5.24
1698 1703 5.107133 TGTGCTAGTTATCTTTAAGGACGC 58.893 41.667 0.00 0.00 31.88 5.19
1699 1704 7.591006 TTTGTGCTAGTTATCTTTAAGGACG 57.409 36.000 0.00 0.00 31.88 4.79
1700 1705 7.910683 GCATTTGTGCTAGTTATCTTTAAGGAC 59.089 37.037 0.00 0.00 0.00 3.85
1701 1706 7.067008 GGCATTTGTGCTAGTTATCTTTAAGGA 59.933 37.037 0.07 0.00 34.73 3.36
1702 1707 7.196331 GGCATTTGTGCTAGTTATCTTTAAGG 58.804 38.462 0.07 0.00 34.73 2.69
1703 1708 7.196331 GGGCATTTGTGCTAGTTATCTTTAAG 58.804 38.462 0.07 0.00 34.73 1.85
1704 1709 6.183360 CGGGCATTTGTGCTAGTTATCTTTAA 60.183 38.462 0.07 0.00 34.73 1.52
1705 1710 5.295787 CGGGCATTTGTGCTAGTTATCTTTA 59.704 40.000 0.07 0.00 34.73 1.85
1706 1711 4.096382 CGGGCATTTGTGCTAGTTATCTTT 59.904 41.667 0.07 0.00 34.73 2.52
1707 1712 3.627577 CGGGCATTTGTGCTAGTTATCTT 59.372 43.478 0.07 0.00 34.73 2.40
1708 1713 3.206150 CGGGCATTTGTGCTAGTTATCT 58.794 45.455 0.07 0.00 34.73 1.98
1709 1714 2.943033 ACGGGCATTTGTGCTAGTTATC 59.057 45.455 0.07 0.00 34.73 1.75
1710 1715 2.682856 CACGGGCATTTGTGCTAGTTAT 59.317 45.455 0.07 0.00 34.73 1.89
1711 1716 2.080693 CACGGGCATTTGTGCTAGTTA 58.919 47.619 0.07 0.00 34.73 2.24
1738 1743 5.687166 ATGAACTGGTATTTTCTCCCGTA 57.313 39.130 0.00 0.00 0.00 4.02
1823 1832 4.362677 ACCTGATACAGTAACCCATGTCT 58.637 43.478 0.00 0.00 0.00 3.41
1835 1847 8.883731 CCACTCAAGTTAATTTACCTGATACAG 58.116 37.037 0.00 0.00 0.00 2.74
1924 1945 1.071385 GCCCCGATCTCATGTCATCTT 59.929 52.381 0.00 0.00 0.00 2.40
1952 1973 1.142474 CGGTTGGGTCGAGTTTGTAC 58.858 55.000 0.00 0.00 0.00 2.90
1997 2018 2.040442 TGCGAGGATGGAGGGGAA 59.960 61.111 0.00 0.00 0.00 3.97
2063 2907 3.076621 GTGTCTTCATGTCATCCTTGCA 58.923 45.455 0.00 0.00 0.00 4.08
2087 2931 3.478857 TGTCAATGGTAACGACAAGGT 57.521 42.857 0.00 0.00 36.75 3.50
2191 3035 0.111832 TAGAGTCGGACACCAGTGGT 59.888 55.000 9.70 9.70 35.62 4.16
2196 3040 2.697761 GCGCTAGAGTCGGACACCA 61.698 63.158 11.27 0.00 0.00 4.17
2199 3043 0.814410 CCTAGCGCTAGAGTCGGACA 60.814 60.000 39.42 7.54 35.21 4.02
2211 3055 3.278157 AAAAAGCAGCCCTAGCGC 58.722 55.556 0.00 0.00 46.67 5.92
2227 3071 7.838079 ACATATCTAAGCATTTGCCCATAAA 57.162 32.000 0.00 0.00 43.38 1.40
2285 3129 9.981114 AGTTTTTCTAGAAAATGTGGTATTTGG 57.019 29.630 26.90 0.00 39.69 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.