Multiple sequence alignment - TraesCS3B01G477900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G477900 chr3B 100.000 2750 0 0 1 2750 726472164 726469415 0.000000e+00 5079.0
1 TraesCS3B01G477900 chr3B 97.428 1011 24 2 1 1009 11215592 11216602 0.000000e+00 1722.0
2 TraesCS3B01G477900 chr3B 90.128 780 51 18 1005 1774 726748296 726747533 0.000000e+00 990.0
3 TraesCS3B01G477900 chr3B 91.603 131 7 2 2184 2310 726740012 726739882 7.830000e-41 178.0
4 TraesCS3B01G477900 chr3B 87.313 134 5 4 1164 1291 727132912 727132785 2.850000e-30 143.0
5 TraesCS3B01G477900 chr2B 97.423 1009 24 2 1 1007 464505090 464504082 0.000000e+00 1718.0
6 TraesCS3B01G477900 chr2B 88.619 1028 90 11 1 1005 550855576 550856599 0.000000e+00 1225.0
7 TraesCS3B01G477900 chr1B 95.747 1011 39 4 1 1007 504081305 504080295 0.000000e+00 1626.0
8 TraesCS3B01G477900 chr4B 93.978 1013 46 7 1 1008 658006784 658007786 0.000000e+00 1519.0
9 TraesCS3B01G477900 chr4B 88.770 1024 92 9 1 1008 449769570 449768554 0.000000e+00 1232.0
10 TraesCS3B01G477900 chr4B 88.945 995 88 13 1 979 449770639 449769651 0.000000e+00 1208.0
11 TraesCS3B01G477900 chr4B 93.919 444 17 2 2311 2750 364051054 364050617 0.000000e+00 662.0
12 TraesCS3B01G477900 chr6B 86.692 1037 105 18 2 1007 515192345 515193379 0.000000e+00 1120.0
13 TraesCS3B01G477900 chr6B 85.632 1037 116 18 2 1007 702297663 702298697 0.000000e+00 1059.0
14 TraesCS3B01G477900 chr3D 82.148 1322 92 59 1053 2310 548535614 548534373 0.000000e+00 1002.0
15 TraesCS3B01G477900 chr3A 90.649 663 44 12 1090 1741 686128350 686127695 0.000000e+00 865.0
16 TraesCS3B01G477900 chr3A 100.000 31 0 0 1018 1048 686128381 686128351 1.060000e-04 58.4
17 TraesCS3B01G477900 chr5B 94.144 444 16 2 2311 2750 468829926 468830363 0.000000e+00 667.0
18 TraesCS3B01G477900 chr5B 97.386 153 4 0 2372 2524 9241707 9241555 7.550000e-66 261.0
19 TraesCS3B01G477900 chr5B 93.960 149 5 1 2606 2750 9241537 9241389 3.560000e-54 222.0
20 TraesCS3B01G477900 chr5B 91.398 93 7 1 916 1008 396439442 396439351 2.870000e-25 126.0
21 TraesCS3B01G477900 chr2A 92.955 440 21 4 2315 2750 693381393 693380960 1.390000e-177 632.0
22 TraesCS3B01G477900 chr5D 90.909 440 31 6 2318 2750 43194139 43194576 1.420000e-162 582.0
23 TraesCS3B01G477900 chr7A 92.500 360 20 3 2395 2750 255697521 255697877 2.440000e-140 508.0
24 TraesCS3B01G477900 chr4D 87.644 348 42 1 2341 2687 489223922 489224269 1.190000e-108 403.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G477900 chr3B 726469415 726472164 2749 True 5079.0 5079 100.0000 1 2750 1 chr3B.!!$R1 2749
1 TraesCS3B01G477900 chr3B 11215592 11216602 1010 False 1722.0 1722 97.4280 1 1009 1 chr3B.!!$F1 1008
2 TraesCS3B01G477900 chr3B 726747533 726748296 763 True 990.0 990 90.1280 1005 1774 1 chr3B.!!$R3 769
3 TraesCS3B01G477900 chr2B 464504082 464505090 1008 True 1718.0 1718 97.4230 1 1007 1 chr2B.!!$R1 1006
4 TraesCS3B01G477900 chr2B 550855576 550856599 1023 False 1225.0 1225 88.6190 1 1005 1 chr2B.!!$F1 1004
5 TraesCS3B01G477900 chr1B 504080295 504081305 1010 True 1626.0 1626 95.7470 1 1007 1 chr1B.!!$R1 1006
6 TraesCS3B01G477900 chr4B 658006784 658007786 1002 False 1519.0 1519 93.9780 1 1008 1 chr4B.!!$F1 1007
7 TraesCS3B01G477900 chr4B 449768554 449770639 2085 True 1220.0 1232 88.8575 1 1008 2 chr4B.!!$R2 1007
8 TraesCS3B01G477900 chr6B 515192345 515193379 1034 False 1120.0 1120 86.6920 2 1007 1 chr6B.!!$F1 1005
9 TraesCS3B01G477900 chr6B 702297663 702298697 1034 False 1059.0 1059 85.6320 2 1007 1 chr6B.!!$F2 1005
10 TraesCS3B01G477900 chr3D 548534373 548535614 1241 True 1002.0 1002 82.1480 1053 2310 1 chr3D.!!$R1 1257
11 TraesCS3B01G477900 chr3A 686127695 686128381 686 True 461.7 865 95.3245 1018 1741 2 chr3A.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
956 2056 2.02746 GTGCCTGGTTGTTTGCCG 59.973 61.111 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2581 3752 0.034896 ACGAAGCTGGTGTACCTTGG 59.965 55.0 2.32 0.0 36.82 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 236 5.860648 AAACTTTGGAGGGATTCCTTCTA 57.139 39.130 13.91 5.80 46.92 2.10
534 536 4.574599 ACATCTTGAAGCTTTGAACACC 57.425 40.909 0.00 0.00 0.00 4.16
956 2056 2.027460 GTGCCTGGTTGTTTGCCG 59.973 61.111 0.00 0.00 0.00 5.69
980 2081 4.202631 TGGCTTTCTATAAAGTTGGGGTGT 60.203 41.667 2.92 0.00 43.44 4.16
982 2083 5.007682 GCTTTCTATAAAGTTGGGGTGTGA 58.992 41.667 2.92 0.00 43.44 3.58
983 2084 5.652452 GCTTTCTATAAAGTTGGGGTGTGAT 59.348 40.000 2.92 0.00 43.44 3.06
1296 2403 1.134401 TCTGCAGCACCTATACAAGCC 60.134 52.381 9.47 0.00 0.00 4.35
1304 2411 2.794910 CACCTATACAAGCCATCGAACG 59.205 50.000 0.00 0.00 0.00 3.95
1306 2413 1.792949 CTATACAAGCCATCGAACGCC 59.207 52.381 3.65 0.00 0.00 5.68
1308 2415 3.864686 CAAGCCATCGAACGCCGG 61.865 66.667 0.00 0.00 39.14 6.13
1312 2419 3.940640 CCATCGAACGCCGGCATG 61.941 66.667 28.98 21.08 39.14 4.06
1313 2420 3.195002 CATCGAACGCCGGCATGT 61.195 61.111 28.98 14.92 39.14 3.21
1314 2421 2.890474 ATCGAACGCCGGCATGTC 60.890 61.111 28.98 18.44 39.14 3.06
1315 2422 3.371097 ATCGAACGCCGGCATGTCT 62.371 57.895 28.98 4.64 39.14 3.41
1316 2423 3.853330 CGAACGCCGGCATGTCTG 61.853 66.667 28.98 11.60 33.91 3.51
1317 2424 2.742372 GAACGCCGGCATGTCTGT 60.742 61.111 28.98 12.36 0.00 3.41
1318 2425 3.027170 GAACGCCGGCATGTCTGTG 62.027 63.158 28.98 9.93 0.00 3.66
1357 2466 1.860950 CACACACGAGACAAGACAAGG 59.139 52.381 0.00 0.00 0.00 3.61
1365 2474 2.298729 GAGACAAGACAAGGAGCAGAGT 59.701 50.000 0.00 0.00 0.00 3.24
1366 2475 3.501349 AGACAAGACAAGGAGCAGAGTA 58.499 45.455 0.00 0.00 0.00 2.59
1375 2484 0.815734 GGAGCAGAGTACCTACGCAA 59.184 55.000 0.00 0.00 0.00 4.85
1376 2485 1.469423 GGAGCAGAGTACCTACGCAAC 60.469 57.143 0.00 0.00 0.00 4.17
1377 2486 0.170561 AGCAGAGTACCTACGCAACG 59.829 55.000 0.00 0.00 0.00 4.10
1378 2487 1.411493 GCAGAGTACCTACGCAACGC 61.411 60.000 0.00 0.00 0.00 4.84
1379 2488 0.109458 CAGAGTACCTACGCAACGCA 60.109 55.000 0.00 0.00 0.00 5.24
1380 2489 0.109412 AGAGTACCTACGCAACGCAC 60.109 55.000 0.00 0.00 0.00 5.34
1491 2630 0.175760 GCTGGTGGCTACGAGATGAA 59.824 55.000 16.35 0.00 34.91 2.57
1492 2631 1.202580 GCTGGTGGCTACGAGATGAAT 60.203 52.381 16.35 0.00 34.91 2.57
1501 2640 1.094073 ACGAGATGAATGCTGCTGCC 61.094 55.000 13.47 0.00 38.71 4.85
1701 2840 2.750657 CCACCCAGGGGCTCTGATC 61.751 68.421 17.99 0.00 46.18 2.92
1723 2862 3.254166 CCCCAATCAATCCATCGATCAAC 59.746 47.826 0.00 0.00 0.00 3.18
1733 2872 2.397413 ATCGATCAACCCATCCGGCC 62.397 60.000 0.00 0.00 33.26 6.13
1757 2896 6.101997 CAGCGATGAACAATATATAGCCTCA 58.898 40.000 0.00 0.00 0.00 3.86
1776 2915 8.371571 AGCCTCAATCTGTATGACATCATATA 57.628 34.615 4.93 1.97 40.53 0.86
1777 2916 8.990203 AGCCTCAATCTGTATGACATCATATAT 58.010 33.333 4.93 0.00 40.53 0.86
1825 2964 3.720818 GCATATATAATGCATTCACGCGC 59.279 43.478 16.86 9.34 44.00 6.86
1826 2965 4.727448 GCATATATAATGCATTCACGCGCA 60.727 41.667 16.86 0.00 44.00 6.09
1827 2966 3.894782 ATATAATGCATTCACGCGCAA 57.105 38.095 16.86 0.00 42.37 4.85
1828 2967 2.780065 ATAATGCATTCACGCGCAAT 57.220 40.000 16.86 1.14 42.37 3.56
1829 2968 2.103898 TAATGCATTCACGCGCAATC 57.896 45.000 16.86 0.41 42.37 2.67
1830 2969 0.170784 AATGCATTCACGCGCAATCA 59.829 45.000 5.73 6.06 42.37 2.57
1831 2970 0.170784 ATGCATTCACGCGCAATCAA 59.829 45.000 5.73 0.00 42.37 2.57
1832 2971 0.454789 TGCATTCACGCGCAATCAAG 60.455 50.000 5.73 0.00 34.59 3.02
1833 2972 1.736249 GCATTCACGCGCAATCAAGC 61.736 55.000 5.73 0.00 0.00 4.01
1834 2973 0.454789 CATTCACGCGCAATCAAGCA 60.455 50.000 5.73 0.00 0.00 3.91
1835 2974 0.452987 ATTCACGCGCAATCAAGCAT 59.547 45.000 5.73 0.00 0.00 3.79
1836 2975 1.082690 TTCACGCGCAATCAAGCATA 58.917 45.000 5.73 0.00 0.00 3.14
1837 2976 0.373370 TCACGCGCAATCAAGCATAC 59.627 50.000 5.73 0.00 0.00 2.39
1838 2977 0.374758 CACGCGCAATCAAGCATACT 59.625 50.000 5.73 0.00 0.00 2.12
1839 2978 0.374758 ACGCGCAATCAAGCATACTG 59.625 50.000 5.73 0.00 0.00 2.74
1840 2979 0.927083 CGCGCAATCAAGCATACTGC 60.927 55.000 8.75 0.00 45.46 4.40
1854 2993 3.499918 GCATACTGCATAGACATTCCACC 59.500 47.826 0.00 0.00 44.26 4.61
1855 2994 2.717639 ACTGCATAGACATTCCACCC 57.282 50.000 0.00 0.00 0.00 4.61
1856 2995 1.212935 ACTGCATAGACATTCCACCCC 59.787 52.381 0.00 0.00 0.00 4.95
1857 2996 0.180171 TGCATAGACATTCCACCCCG 59.820 55.000 0.00 0.00 0.00 5.73
1858 2997 0.535102 GCATAGACATTCCACCCCGG 60.535 60.000 0.00 0.00 0.00 5.73
1882 3021 1.072965 GGCCCCTCTCAGGTATGAATG 59.927 57.143 0.00 0.00 34.23 2.67
1884 3023 2.439507 GCCCCTCTCAGGTATGAATGAA 59.560 50.000 0.00 0.00 34.23 2.57
1885 3024 3.073650 GCCCCTCTCAGGTATGAATGAAT 59.926 47.826 0.00 0.00 34.23 2.57
1886 3025 4.287067 GCCCCTCTCAGGTATGAATGAATA 59.713 45.833 0.00 0.00 34.23 1.75
1887 3026 5.221925 GCCCCTCTCAGGTATGAATGAATAA 60.222 44.000 0.00 0.00 34.23 1.40
1888 3027 6.523150 GCCCCTCTCAGGTATGAATGAATAAT 60.523 42.308 0.00 0.00 34.23 1.28
1889 3028 7.311297 GCCCCTCTCAGGTATGAATGAATAATA 60.311 40.741 0.00 0.00 34.23 0.98
1891 3030 9.829507 CCCTCTCAGGTATGAATGAATAATATC 57.170 37.037 0.00 0.00 34.23 1.63
1912 3051 9.565213 AATATCAGTTGTACTACTACGTTTCAC 57.435 33.333 9.68 0.00 0.00 3.18
1919 3058 2.485814 ACTACTACGTTTCACTCGACCC 59.514 50.000 0.00 0.00 0.00 4.46
1922 3061 0.667993 TACGTTTCACTCGACCCGTT 59.332 50.000 0.00 0.00 31.99 4.44
1924 3063 1.280206 CGTTTCACTCGACCCGTTCC 61.280 60.000 0.00 0.00 0.00 3.62
1932 3071 1.136147 CGACCCGTTCCACTAGACG 59.864 63.158 0.00 0.00 38.90 4.18
1933 3072 1.153881 GACCCGTTCCACTAGACGC 60.154 63.158 0.00 0.00 37.91 5.19
1934 3073 1.870055 GACCCGTTCCACTAGACGCA 61.870 60.000 0.00 0.00 37.91 5.24
1935 3074 1.445582 CCCGTTCCACTAGACGCAC 60.446 63.158 0.00 0.00 37.91 5.34
1936 3075 1.800315 CCGTTCCACTAGACGCACG 60.800 63.158 0.00 0.00 37.91 5.34
1942 3081 3.432588 ACTAGACGCACGCGAGCT 61.433 61.111 25.38 16.12 42.83 4.09
1960 3099 4.212143 AGCTTGTATGCTCAAGTGATGA 57.788 40.909 14.52 0.00 44.41 2.92
1961 3100 3.937706 AGCTTGTATGCTCAAGTGATGAC 59.062 43.478 14.52 0.00 44.41 3.06
1962 3101 3.937706 GCTTGTATGCTCAAGTGATGACT 59.062 43.478 14.52 0.00 44.41 3.41
1963 3102 5.105187 AGCTTGTATGCTCAAGTGATGACTA 60.105 40.000 14.52 0.00 44.41 2.59
1985 3124 7.957002 ACTAGTGAATATACACAGCTTGCTAT 58.043 34.615 0.00 0.00 42.45 2.97
1989 3128 9.212641 AGTGAATATACACAGCTTGCTATTATG 57.787 33.333 0.00 0.00 42.45 1.90
1991 3130 8.992073 TGAATATACACAGCTTGCTATTATGTG 58.008 33.333 9.39 9.39 45.22 3.21
1992 3131 5.679734 ATACACAGCTTGCTATTATGTGC 57.320 39.130 10.46 0.00 43.92 4.57
1993 3132 3.614092 ACACAGCTTGCTATTATGTGCT 58.386 40.909 10.46 0.00 43.92 4.40
1995 3134 4.460382 ACACAGCTTGCTATTATGTGCTTT 59.540 37.500 10.46 0.00 43.92 3.51
1996 3135 5.647658 ACACAGCTTGCTATTATGTGCTTTA 59.352 36.000 10.46 0.00 43.92 1.85
1997 3136 5.967674 CACAGCTTGCTATTATGTGCTTTAC 59.032 40.000 0.00 0.00 35.35 2.01
2015 3160 9.236006 GTGCTTTACATAATGATTCTATCCCAT 57.764 33.333 0.00 0.00 0.00 4.00
2023 3168 9.163899 CATAATGATTCTATCCCATTCTCTGTG 57.836 37.037 0.00 0.00 33.21 3.66
2025 3170 6.566079 TGATTCTATCCCATTCTCTGTGTT 57.434 37.500 0.00 0.00 0.00 3.32
2041 3209 4.569162 TCTGTGTTTGTGGTTCTAACGAAG 59.431 41.667 0.00 0.00 35.24 3.79
2049 3217 2.555325 TGGTTCTAACGAAGAGCGAGAA 59.445 45.455 0.00 0.00 44.57 2.87
2054 3222 2.882742 AACGAAGAGCGAGAAAATGC 57.117 45.000 0.00 0.00 44.57 3.56
2061 3229 3.516615 AGAGCGAGAAAATGCAGTACTC 58.483 45.455 10.02 10.02 0.00 2.59
2066 3234 3.536570 GAGAAAATGCAGTACTCCCTCC 58.463 50.000 9.21 0.00 0.00 4.30
2067 3235 2.912956 AGAAAATGCAGTACTCCCTCCA 59.087 45.455 0.00 0.00 0.00 3.86
2071 3239 0.824109 TGCAGTACTCCCTCCATTCG 59.176 55.000 0.00 0.00 0.00 3.34
2072 3240 0.530870 GCAGTACTCCCTCCATTCGC 60.531 60.000 0.00 0.00 0.00 4.70
2078 3246 2.919228 ACTCCCTCCATTCGCAAATAC 58.081 47.619 0.00 0.00 0.00 1.89
2082 3250 4.703897 TCCCTCCATTCGCAAATACTAAG 58.296 43.478 0.00 0.00 0.00 2.18
2088 3256 7.246674 TCCATTCGCAAATACTAAGATGTTC 57.753 36.000 0.00 0.00 0.00 3.18
2094 3262 8.766000 TCGCAAATACTAAGATGTTCTAACAA 57.234 30.769 0.00 0.00 43.03 2.83
2095 3263 9.378551 TCGCAAATACTAAGATGTTCTAACAAT 57.621 29.630 0.00 0.00 43.03 2.71
2096 3264 9.988350 CGCAAATACTAAGATGTTCTAACAATT 57.012 29.630 0.00 1.47 43.03 2.32
2159 3327 7.271223 CGTATTTGTTCATTCATTTCAGTCCAC 59.729 37.037 0.00 0.00 0.00 4.02
2164 3332 7.819644 TGTTCATTCATTTCAGTCCACATAAG 58.180 34.615 0.00 0.00 0.00 1.73
2172 3343 7.657354 TCATTTCAGTCCACATAAGAATATCCG 59.343 37.037 0.00 0.00 0.00 4.18
2177 3348 3.389656 TCCACATAAGAATATCCGCACCA 59.610 43.478 0.00 0.00 0.00 4.17
2193 3364 6.061441 TCCGCACCATCTTATATTTGTGAAT 58.939 36.000 0.00 0.00 0.00 2.57
2310 3481 5.728471 TGTTCATCACTTTTTCTTTGCCAA 58.272 33.333 0.00 0.00 0.00 4.52
2311 3482 5.811613 TGTTCATCACTTTTTCTTTGCCAAG 59.188 36.000 0.00 0.00 0.00 3.61
2312 3483 5.596836 TCATCACTTTTTCTTTGCCAAGT 57.403 34.783 0.00 0.00 0.00 3.16
2313 3484 5.591099 TCATCACTTTTTCTTTGCCAAGTC 58.409 37.500 0.00 0.00 0.00 3.01
2314 3485 5.126869 TCATCACTTTTTCTTTGCCAAGTCA 59.873 36.000 0.00 0.00 0.00 3.41
2315 3486 4.997565 TCACTTTTTCTTTGCCAAGTCAG 58.002 39.130 0.00 0.00 0.00 3.51
2316 3487 3.553105 CACTTTTTCTTTGCCAAGTCAGC 59.447 43.478 0.00 0.00 0.00 4.26
2317 3488 2.490328 TTTTCTTTGCCAAGTCAGCG 57.510 45.000 0.00 0.00 0.00 5.18
2318 3489 1.388547 TTTCTTTGCCAAGTCAGCGT 58.611 45.000 0.00 0.00 0.00 5.07
2319 3490 0.662619 TTCTTTGCCAAGTCAGCGTG 59.337 50.000 0.00 0.00 0.00 5.34
2320 3491 1.370900 CTTTGCCAAGTCAGCGTGC 60.371 57.895 0.00 0.00 0.00 5.34
2321 3492 2.062361 CTTTGCCAAGTCAGCGTGCA 62.062 55.000 0.00 0.00 0.00 4.57
2322 3493 2.335052 TTTGCCAAGTCAGCGTGCAC 62.335 55.000 6.82 6.82 0.00 4.57
2323 3494 4.374702 GCCAAGTCAGCGTGCACG 62.375 66.667 34.01 34.01 43.27 5.34
2324 3495 2.967076 CCAAGTCAGCGTGCACGT 60.967 61.111 36.80 22.42 42.22 4.49
2325 3496 2.246397 CAAGTCAGCGTGCACGTG 59.754 61.111 36.80 30.52 42.22 4.49
2326 3497 3.640000 AAGTCAGCGTGCACGTGC 61.640 61.111 36.80 33.11 42.22 5.34
2341 3512 3.318875 TGCAACGCACGTCTGAAG 58.681 55.556 0.00 0.00 31.71 3.02
2342 3513 2.243957 TGCAACGCACGTCTGAAGG 61.244 57.895 0.00 0.00 31.71 3.46
2343 3514 1.954146 GCAACGCACGTCTGAAGGA 60.954 57.895 0.00 0.00 0.00 3.36
2344 3515 1.891060 GCAACGCACGTCTGAAGGAG 61.891 60.000 0.00 0.00 0.00 3.69
2345 3516 1.664965 AACGCACGTCTGAAGGAGC 60.665 57.895 0.00 0.00 0.00 4.70
2346 3517 2.049156 CGCACGTCTGAAGGAGCA 60.049 61.111 9.85 0.00 0.00 4.26
2347 3518 1.664649 CGCACGTCTGAAGGAGCAA 60.665 57.895 9.85 0.00 0.00 3.91
2348 3519 1.221466 CGCACGTCTGAAGGAGCAAA 61.221 55.000 9.85 0.00 0.00 3.68
2349 3520 0.235926 GCACGTCTGAAGGAGCAAAC 59.764 55.000 0.00 0.00 0.00 2.93
2350 3521 1.871080 CACGTCTGAAGGAGCAAACT 58.129 50.000 0.00 0.00 0.00 2.66
2351 3522 2.866460 GCACGTCTGAAGGAGCAAACTA 60.866 50.000 0.00 0.00 0.00 2.24
2352 3523 3.589988 CACGTCTGAAGGAGCAAACTAT 58.410 45.455 0.00 0.00 0.00 2.12
2353 3524 3.997021 CACGTCTGAAGGAGCAAACTATT 59.003 43.478 0.00 0.00 0.00 1.73
2354 3525 4.092091 CACGTCTGAAGGAGCAAACTATTC 59.908 45.833 0.00 0.00 0.00 1.75
2355 3526 4.245660 CGTCTGAAGGAGCAAACTATTCA 58.754 43.478 0.00 0.00 33.15 2.57
2356 3527 4.872691 CGTCTGAAGGAGCAAACTATTCAT 59.127 41.667 0.00 0.00 33.52 2.57
2357 3528 5.352569 CGTCTGAAGGAGCAAACTATTCATT 59.647 40.000 0.00 0.00 33.52 2.57
2358 3529 6.535150 CGTCTGAAGGAGCAAACTATTCATTA 59.465 38.462 0.00 0.00 33.52 1.90
2359 3530 7.225538 CGTCTGAAGGAGCAAACTATTCATTAT 59.774 37.037 0.00 0.00 33.52 1.28
2360 3531 8.555361 GTCTGAAGGAGCAAACTATTCATTATC 58.445 37.037 0.00 0.00 33.52 1.75
2361 3532 8.267183 TCTGAAGGAGCAAACTATTCATTATCA 58.733 33.333 0.00 0.00 33.52 2.15
2362 3533 8.985315 TGAAGGAGCAAACTATTCATTATCAT 57.015 30.769 0.00 0.00 30.57 2.45
2363 3534 9.060347 TGAAGGAGCAAACTATTCATTATCATC 57.940 33.333 0.00 0.00 30.57 2.92
2364 3535 8.985315 AAGGAGCAAACTATTCATTATCATCA 57.015 30.769 0.00 0.00 0.00 3.07
2365 3536 8.985315 AGGAGCAAACTATTCATTATCATCAA 57.015 30.769 0.00 0.00 0.00 2.57
2366 3537 9.584008 AGGAGCAAACTATTCATTATCATCAAT 57.416 29.630 0.00 0.00 0.00 2.57
2399 3570 9.247861 ACAAAGGAAAAATATCATAAGCTCTGT 57.752 29.630 0.00 0.00 0.00 3.41
2431 3602 8.094798 AGAAAAATAATGAACTACGAGTTGCA 57.905 30.769 5.20 0.00 38.80 4.08
2432 3603 8.564574 AGAAAAATAATGAACTACGAGTTGCAA 58.435 29.630 0.00 0.00 38.80 4.08
2433 3604 9.176181 GAAAAATAATGAACTACGAGTTGCAAA 57.824 29.630 0.00 0.00 38.80 3.68
2434 3605 9.522804 AAAAATAATGAACTACGAGTTGCAAAA 57.477 25.926 0.00 0.00 38.80 2.44
2435 3606 9.522804 AAAATAATGAACTACGAGTTGCAAAAA 57.477 25.926 0.00 0.00 38.80 1.94
2436 3607 9.691362 AAATAATGAACTACGAGTTGCAAAAAT 57.309 25.926 0.00 0.00 38.80 1.82
2440 3611 9.691362 AATGAACTACGAGTTGCAAAAATATTT 57.309 25.926 0.00 0.00 38.80 1.40
2441 3612 8.500837 TGAACTACGAGTTGCAAAAATATTTG 57.499 30.769 0.00 0.00 42.51 2.32
2442 3613 8.132362 TGAACTACGAGTTGCAAAAATATTTGT 58.868 29.630 0.00 0.00 42.08 2.83
2443 3614 8.502161 AACTACGAGTTGCAAAAATATTTGTC 57.498 30.769 0.00 0.00 38.58 3.18
2444 3615 7.081976 ACTACGAGTTGCAAAAATATTTGTCC 58.918 34.615 0.00 0.00 46.19 4.02
2445 3616 6.084326 ACGAGTTGCAAAAATATTTGTCCT 57.916 33.333 0.00 0.00 46.19 3.85
2446 3617 6.512297 ACGAGTTGCAAAAATATTTGTCCTT 58.488 32.000 0.00 0.00 46.19 3.36
2447 3618 7.653647 ACGAGTTGCAAAAATATTTGTCCTTA 58.346 30.769 0.00 0.00 46.19 2.69
2448 3619 8.303876 ACGAGTTGCAAAAATATTTGTCCTTAT 58.696 29.630 0.00 0.00 46.19 1.73
2449 3620 9.781834 CGAGTTGCAAAAATATTTGTCCTTATA 57.218 29.630 0.00 0.00 46.19 0.98
2453 3624 9.868277 TTGCAAAAATATTTGTCCTTATACTGG 57.132 29.630 0.39 0.00 46.19 4.00
2454 3625 7.978975 TGCAAAAATATTTGTCCTTATACTGGC 59.021 33.333 0.39 0.00 46.19 4.85
2455 3626 7.978975 GCAAAAATATTTGTCCTTATACTGGCA 59.021 33.333 0.39 0.00 46.19 4.92
2456 3627 9.520204 CAAAAATATTTGTCCTTATACTGGCAG 57.480 33.333 14.16 14.16 40.84 4.85
2457 3628 9.474313 AAAAATATTTGTCCTTATACTGGCAGA 57.526 29.630 23.66 5.22 0.00 4.26
2458 3629 9.474313 AAAATATTTGTCCTTATACTGGCAGAA 57.526 29.630 23.66 4.03 0.00 3.02
2459 3630 9.474313 AAATATTTGTCCTTATACTGGCAGAAA 57.526 29.630 23.66 9.24 0.00 2.52
2460 3631 6.759497 ATTTGTCCTTATACTGGCAGAAAC 57.241 37.500 23.66 8.33 0.00 2.78
2461 3632 4.901197 TGTCCTTATACTGGCAGAAACA 57.099 40.909 23.66 10.68 0.00 2.83
2462 3633 5.235850 TGTCCTTATACTGGCAGAAACAA 57.764 39.130 23.66 8.30 0.00 2.83
2463 3634 5.245531 TGTCCTTATACTGGCAGAAACAAG 58.754 41.667 23.66 16.56 0.00 3.16
2464 3635 4.095036 GTCCTTATACTGGCAGAAACAAGC 59.905 45.833 23.66 1.15 0.00 4.01
2465 3636 4.009675 CCTTATACTGGCAGAAACAAGCA 58.990 43.478 23.66 0.00 0.00 3.91
2466 3637 4.641989 CCTTATACTGGCAGAAACAAGCAT 59.358 41.667 23.66 0.00 0.00 3.79
2467 3638 5.822519 CCTTATACTGGCAGAAACAAGCATA 59.177 40.000 23.66 0.00 0.00 3.14
2468 3639 6.238484 CCTTATACTGGCAGAAACAAGCATAC 60.238 42.308 23.66 0.00 0.00 2.39
2469 3640 3.146104 ACTGGCAGAAACAAGCATACT 57.854 42.857 23.66 0.00 0.00 2.12
2470 3641 3.490348 ACTGGCAGAAACAAGCATACTT 58.510 40.909 23.66 0.00 36.19 2.24
2486 3657 5.611796 CATACTTGCAGAGTAGCACAAAA 57.388 39.130 12.26 0.00 45.61 2.44
2487 3658 5.625251 CATACTTGCAGAGTAGCACAAAAG 58.375 41.667 12.26 0.00 45.61 2.27
2488 3659 2.291741 ACTTGCAGAGTAGCACAAAAGC 59.708 45.455 0.44 0.00 45.61 3.51
2489 3660 1.965935 TGCAGAGTAGCACAAAAGCA 58.034 45.000 0.00 0.00 40.11 3.91
2490 3661 2.296792 TGCAGAGTAGCACAAAAGCAA 58.703 42.857 0.00 0.00 40.11 3.91
2491 3662 2.886523 TGCAGAGTAGCACAAAAGCAAT 59.113 40.909 0.00 0.00 40.11 3.56
2492 3663 4.071423 TGCAGAGTAGCACAAAAGCAATA 58.929 39.130 0.00 0.00 40.11 1.90
2493 3664 4.518590 TGCAGAGTAGCACAAAAGCAATAA 59.481 37.500 0.00 0.00 40.11 1.40
2494 3665 5.009510 TGCAGAGTAGCACAAAAGCAATAAA 59.990 36.000 0.00 0.00 40.11 1.40
2495 3666 5.570589 GCAGAGTAGCACAAAAGCAATAAAG 59.429 40.000 0.00 0.00 36.85 1.85
2496 3667 5.570589 CAGAGTAGCACAAAAGCAATAAAGC 59.429 40.000 0.00 0.00 36.85 3.51
2497 3668 4.809673 AGTAGCACAAAAGCAATAAAGCC 58.190 39.130 0.00 0.00 36.85 4.35
2498 3669 3.749665 AGCACAAAAGCAATAAAGCCA 57.250 38.095 0.00 0.00 36.85 4.75
2499 3670 4.070630 AGCACAAAAGCAATAAAGCCAA 57.929 36.364 0.00 0.00 36.85 4.52
2500 3671 4.450053 AGCACAAAAGCAATAAAGCCAAA 58.550 34.783 0.00 0.00 36.85 3.28
2501 3672 4.880696 AGCACAAAAGCAATAAAGCCAAAA 59.119 33.333 0.00 0.00 36.85 2.44
2502 3673 5.356470 AGCACAAAAGCAATAAAGCCAAAAA 59.644 32.000 0.00 0.00 36.85 1.94
2522 3693 4.483476 AAATACAAACACTCTCCGTTGC 57.517 40.909 0.00 0.00 0.00 4.17
2523 3694 2.605837 TACAAACACTCTCCGTTGCA 57.394 45.000 0.00 0.00 0.00 4.08
2524 3695 1.299541 ACAAACACTCTCCGTTGCAG 58.700 50.000 0.00 0.00 0.00 4.41
2525 3696 1.134521 ACAAACACTCTCCGTTGCAGA 60.135 47.619 0.00 0.00 0.00 4.26
2526 3697 1.528586 CAAACACTCTCCGTTGCAGAG 59.471 52.381 0.00 0.00 42.84 3.35
2527 3698 0.601311 AACACTCTCCGTTGCAGAGC 60.601 55.000 0.10 0.00 41.13 4.09
2528 3699 1.005748 CACTCTCCGTTGCAGAGCA 60.006 57.895 0.10 0.00 41.13 4.26
2529 3700 0.601046 CACTCTCCGTTGCAGAGCAA 60.601 55.000 0.00 0.00 46.80 3.91
2542 3713 6.545504 TTGCAGAGCAAGTCTTAAACTAAG 57.454 37.500 0.00 0.00 43.99 2.18
2543 3714 5.853936 TGCAGAGCAAGTCTTAAACTAAGA 58.146 37.500 0.00 0.00 37.81 2.10
2544 3715 6.467677 TGCAGAGCAAGTCTTAAACTAAGAT 58.532 36.000 0.00 0.00 40.28 2.40
2545 3716 6.936900 TGCAGAGCAAGTCTTAAACTAAGATT 59.063 34.615 0.00 0.00 40.28 2.40
2546 3717 8.094548 TGCAGAGCAAGTCTTAAACTAAGATTA 58.905 33.333 0.00 0.00 40.28 1.75
2547 3718 9.103861 GCAGAGCAAGTCTTAAACTAAGATTAT 57.896 33.333 0.00 0.00 45.63 1.28
2579 3750 9.520515 TTTTCTCAAGCTTATTATTCTTCACCT 57.479 29.630 0.00 0.00 0.00 4.00
2580 3751 8.723942 TTCTCAAGCTTATTATTCTTCACCTC 57.276 34.615 0.00 0.00 0.00 3.85
2581 3752 7.275920 TCTCAAGCTTATTATTCTTCACCTCC 58.724 38.462 0.00 0.00 0.00 4.30
2582 3753 6.357367 TCAAGCTTATTATTCTTCACCTCCC 58.643 40.000 0.00 0.00 0.00 4.30
2583 3754 5.975988 AGCTTATTATTCTTCACCTCCCA 57.024 39.130 0.00 0.00 0.00 4.37
2584 3755 6.327386 AGCTTATTATTCTTCACCTCCCAA 57.673 37.500 0.00 0.00 0.00 4.12
2585 3756 6.360618 AGCTTATTATTCTTCACCTCCCAAG 58.639 40.000 0.00 0.00 0.00 3.61
2595 3766 1.299976 CCTCCCAAGGTACACCAGC 59.700 63.158 0.38 0.00 37.94 4.85
2596 3767 1.201429 CCTCCCAAGGTACACCAGCT 61.201 60.000 0.38 0.00 37.94 4.24
2597 3768 0.693049 CTCCCAAGGTACACCAGCTT 59.307 55.000 0.38 0.00 45.87 3.74
2598 3769 0.690762 TCCCAAGGTACACCAGCTTC 59.309 55.000 0.38 0.00 43.10 3.86
2599 3770 0.673644 CCCAAGGTACACCAGCTTCG 60.674 60.000 0.38 0.00 43.10 3.79
2600 3771 0.034896 CCAAGGTACACCAGCTTCGT 59.965 55.000 0.38 0.00 43.10 3.85
2601 3772 1.542547 CCAAGGTACACCAGCTTCGTT 60.543 52.381 0.38 0.00 43.10 3.85
2602 3773 2.218603 CAAGGTACACCAGCTTCGTTT 58.781 47.619 0.38 0.00 43.10 3.60
2603 3774 1.878953 AGGTACACCAGCTTCGTTTG 58.121 50.000 0.38 0.00 38.89 2.93
2604 3775 0.237498 GGTACACCAGCTTCGTTTGC 59.763 55.000 0.00 0.00 35.64 3.68
2605 3776 0.941542 GTACACCAGCTTCGTTTGCA 59.058 50.000 0.00 0.00 0.00 4.08
2606 3777 0.941542 TACACCAGCTTCGTTTGCAC 59.058 50.000 0.00 0.00 0.00 4.57
2607 3778 0.748005 ACACCAGCTTCGTTTGCACT 60.748 50.000 0.00 0.00 0.00 4.40
2608 3779 0.040958 CACCAGCTTCGTTTGCACTC 60.041 55.000 0.00 0.00 0.00 3.51
2609 3780 1.166531 ACCAGCTTCGTTTGCACTCC 61.167 55.000 0.00 0.00 0.00 3.85
2610 3781 1.165907 CCAGCTTCGTTTGCACTCCA 61.166 55.000 0.00 0.00 0.00 3.86
2611 3782 0.662619 CAGCTTCGTTTGCACTCCAA 59.337 50.000 0.00 0.00 0.00 3.53
2612 3783 1.065401 CAGCTTCGTTTGCACTCCAAA 59.935 47.619 0.00 0.00 40.97 3.28
2613 3784 1.334869 AGCTTCGTTTGCACTCCAAAG 59.665 47.619 0.00 0.00 43.67 2.77
2614 3785 1.333619 GCTTCGTTTGCACTCCAAAGA 59.666 47.619 0.00 0.00 43.67 2.52
2615 3786 2.223479 GCTTCGTTTGCACTCCAAAGAA 60.223 45.455 0.00 0.00 43.67 2.52
2616 3787 3.621794 CTTCGTTTGCACTCCAAAGAAG 58.378 45.455 9.21 9.21 43.67 2.85
2617 3788 2.639065 TCGTTTGCACTCCAAAGAAGT 58.361 42.857 0.00 0.00 43.67 3.01
2618 3789 3.799366 TCGTTTGCACTCCAAAGAAGTA 58.201 40.909 0.00 0.00 43.67 2.24
2619 3790 4.193090 TCGTTTGCACTCCAAAGAAGTAA 58.807 39.130 0.00 0.00 43.67 2.24
2620 3791 4.819630 TCGTTTGCACTCCAAAGAAGTAAT 59.180 37.500 0.00 0.00 43.67 1.89
2621 3792 5.049680 TCGTTTGCACTCCAAAGAAGTAATC 60.050 40.000 0.00 0.00 43.67 1.75
2622 3793 5.461526 GTTTGCACTCCAAAGAAGTAATCC 58.538 41.667 0.00 0.00 43.67 3.01
2623 3794 4.365514 TGCACTCCAAAGAAGTAATCCA 57.634 40.909 0.00 0.00 0.00 3.41
2624 3795 4.326826 TGCACTCCAAAGAAGTAATCCAG 58.673 43.478 0.00 0.00 0.00 3.86
2625 3796 3.127721 GCACTCCAAAGAAGTAATCCAGC 59.872 47.826 0.00 0.00 0.00 4.85
2626 3797 4.326826 CACTCCAAAGAAGTAATCCAGCA 58.673 43.478 0.00 0.00 0.00 4.41
2627 3798 4.946157 CACTCCAAAGAAGTAATCCAGCAT 59.054 41.667 0.00 0.00 0.00 3.79
2628 3799 6.115446 CACTCCAAAGAAGTAATCCAGCATA 58.885 40.000 0.00 0.00 0.00 3.14
2629 3800 6.599244 CACTCCAAAGAAGTAATCCAGCATAA 59.401 38.462 0.00 0.00 0.00 1.90
2630 3801 6.825721 ACTCCAAAGAAGTAATCCAGCATAAG 59.174 38.462 0.00 0.00 0.00 1.73
2631 3802 6.957631 TCCAAAGAAGTAATCCAGCATAAGA 58.042 36.000 0.00 0.00 0.00 2.10
2632 3803 7.402054 TCCAAAGAAGTAATCCAGCATAAGAA 58.598 34.615 0.00 0.00 0.00 2.52
2633 3804 8.055181 TCCAAAGAAGTAATCCAGCATAAGAAT 58.945 33.333 0.00 0.00 0.00 2.40
2634 3805 9.342308 CCAAAGAAGTAATCCAGCATAAGAATA 57.658 33.333 0.00 0.00 0.00 1.75
2637 3808 9.771534 AAGAAGTAATCCAGCATAAGAATACTC 57.228 33.333 0.00 0.00 29.45 2.59
2638 3809 8.371699 AGAAGTAATCCAGCATAAGAATACTCC 58.628 37.037 0.00 0.00 29.45 3.85
2639 3810 7.010339 AGTAATCCAGCATAAGAATACTCCC 57.990 40.000 0.00 0.00 24.89 4.30
2640 3811 4.543590 ATCCAGCATAAGAATACTCCCG 57.456 45.455 0.00 0.00 0.00 5.14
2641 3812 3.572642 TCCAGCATAAGAATACTCCCGA 58.427 45.455 0.00 0.00 0.00 5.14
2642 3813 4.160329 TCCAGCATAAGAATACTCCCGAT 58.840 43.478 0.00 0.00 0.00 4.18
2643 3814 4.021104 TCCAGCATAAGAATACTCCCGATG 60.021 45.833 0.00 0.00 0.00 3.84
2644 3815 3.681897 CAGCATAAGAATACTCCCGATGC 59.318 47.826 0.00 0.00 38.75 3.91
2645 3816 3.324846 AGCATAAGAATACTCCCGATGCA 59.675 43.478 6.71 0.00 40.47 3.96
2646 3817 4.019860 AGCATAAGAATACTCCCGATGCAT 60.020 41.667 0.00 0.00 40.47 3.96
2647 3818 4.093998 GCATAAGAATACTCCCGATGCATG 59.906 45.833 2.46 0.00 38.43 4.06
2648 3819 2.175878 AGAATACTCCCGATGCATGC 57.824 50.000 11.82 11.82 0.00 4.06
2649 3820 1.696336 AGAATACTCCCGATGCATGCT 59.304 47.619 20.33 4.11 0.00 3.79
2650 3821 2.899900 AGAATACTCCCGATGCATGCTA 59.100 45.455 20.33 5.73 0.00 3.49
2651 3822 3.324846 AGAATACTCCCGATGCATGCTAA 59.675 43.478 20.33 0.00 0.00 3.09
2652 3823 2.820059 TACTCCCGATGCATGCTAAG 57.180 50.000 20.33 9.42 0.00 2.18
2653 3824 1.123077 ACTCCCGATGCATGCTAAGA 58.877 50.000 20.33 7.67 0.00 2.10
2654 3825 1.486310 ACTCCCGATGCATGCTAAGAA 59.514 47.619 20.33 0.00 0.00 2.52
2655 3826 2.092968 ACTCCCGATGCATGCTAAGAAA 60.093 45.455 20.33 0.00 0.00 2.52
2656 3827 2.547211 CTCCCGATGCATGCTAAGAAAG 59.453 50.000 20.33 6.28 0.00 2.62
2676 3847 8.371770 AGAAAGCAAGTATAGCATTAGTAAGC 57.628 34.615 0.00 0.00 0.00 3.09
2677 3848 7.987458 AGAAAGCAAGTATAGCATTAGTAAGCA 59.013 33.333 6.97 0.00 0.00 3.91
2678 3849 8.682936 AAAGCAAGTATAGCATTAGTAAGCAT 57.317 30.769 6.97 0.00 0.00 3.79
2679 3850 7.664082 AGCAAGTATAGCATTAGTAAGCATG 57.336 36.000 6.97 0.00 0.00 4.06
2680 3851 7.445121 AGCAAGTATAGCATTAGTAAGCATGA 58.555 34.615 0.00 0.00 0.00 3.07
2681 3852 7.933577 AGCAAGTATAGCATTAGTAAGCATGAA 59.066 33.333 0.00 0.00 0.00 2.57
2682 3853 8.725148 GCAAGTATAGCATTAGTAAGCATGAAT 58.275 33.333 0.00 0.00 0.00 2.57
2685 3856 9.784531 AGTATAGCATTAGTAAGCATGAATTGT 57.215 29.630 0.00 0.00 0.00 2.71
2696 3867 9.618890 AGTAAGCATGAATTGTAATACTGACAT 57.381 29.630 0.00 0.00 0.00 3.06
2697 3868 9.655769 GTAAGCATGAATTGTAATACTGACATG 57.344 33.333 0.00 0.00 37.50 3.21
2698 3869 8.510243 AAGCATGAATTGTAATACTGACATGA 57.490 30.769 16.92 0.00 36.87 3.07
2699 3870 8.151141 AGCATGAATTGTAATACTGACATGAG 57.849 34.615 16.92 0.00 36.87 2.90
2700 3871 7.989170 AGCATGAATTGTAATACTGACATGAGA 59.011 33.333 16.92 0.00 36.87 3.27
2701 3872 8.615211 GCATGAATTGTAATACTGACATGAGAA 58.385 33.333 16.92 0.00 36.87 2.87
2708 3879 9.591792 TTGTAATACTGACATGAGAAATCAGAG 57.408 33.333 15.11 0.00 42.07 3.35
2709 3880 8.971073 TGTAATACTGACATGAGAAATCAGAGA 58.029 33.333 15.11 5.17 42.07 3.10
2710 3881 9.979578 GTAATACTGACATGAGAAATCAGAGAT 57.020 33.333 15.11 6.85 42.07 2.75
2714 3885 8.247666 ACTGACATGAGAAATCAGAGATATCA 57.752 34.615 15.11 0.00 42.07 2.15
2715 3886 8.872134 ACTGACATGAGAAATCAGAGATATCAT 58.128 33.333 15.11 0.00 42.07 2.45
2716 3887 9.713713 CTGACATGAGAAATCAGAGATATCATT 57.286 33.333 5.32 0.00 42.07 2.57
2743 3914 7.553044 AGTTTGACTATATTTGTTAGGACTGGC 59.447 37.037 0.00 0.00 0.00 4.85
2744 3915 6.808321 TGACTATATTTGTTAGGACTGGCT 57.192 37.500 0.00 0.00 0.00 4.75
2745 3916 6.817184 TGACTATATTTGTTAGGACTGGCTC 58.183 40.000 0.00 0.00 0.00 4.70
2746 3917 6.611642 TGACTATATTTGTTAGGACTGGCTCT 59.388 38.462 0.00 0.00 0.00 4.09
2747 3918 7.783119 TGACTATATTTGTTAGGACTGGCTCTA 59.217 37.037 0.00 0.00 0.00 2.43
2748 3919 8.728596 ACTATATTTGTTAGGACTGGCTCTAT 57.271 34.615 0.00 0.00 0.00 1.98
2749 3920 9.824216 ACTATATTTGTTAGGACTGGCTCTATA 57.176 33.333 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
474 475 9.846248 CAAAAGGAAGTTAATCGATCAAAAGAT 57.154 29.630 0.00 0.00 0.00 2.40
479 481 7.229707 TGTTCCAAAAGGAAGTTAATCGATCAA 59.770 33.333 0.00 0.00 0.00 2.57
534 536 1.230635 ACAAGGCAGCAGCAGTAACG 61.231 55.000 2.65 0.00 44.61 3.18
956 2056 4.157840 CACCCCAACTTTATAGAAAGCCAC 59.842 45.833 9.73 0.00 45.16 5.01
1108 2209 9.615295 TTTTTGCAGATAATAACTTTCCGTAAC 57.385 29.630 0.00 0.00 0.00 2.50
1264 2368 2.685017 TGCAGAGCATCGGGAGGT 60.685 61.111 0.00 0.00 42.67 3.85
1291 2395 3.864686 CCGGCGTTCGATGGCTTG 61.865 66.667 6.01 3.15 42.43 4.01
1296 2403 3.155470 GACATGCCGGCGTTCGATG 62.155 63.158 21.21 19.95 42.43 3.84
1304 2411 3.807538 CTGCACAGACATGCCGGC 61.808 66.667 22.73 22.73 45.50 6.13
1306 2413 2.319011 GATGCTGCACAGACATGCCG 62.319 60.000 3.57 0.00 45.50 5.69
1308 2415 0.377554 GAGATGCTGCACAGACATGC 59.622 55.000 3.57 0.00 46.32 4.06
1309 2416 1.015109 GGAGATGCTGCACAGACATG 58.985 55.000 3.57 0.00 0.00 3.21
1310 2417 0.107312 GGGAGATGCTGCACAGACAT 60.107 55.000 3.57 4.70 0.00 3.06
1311 2418 1.297689 GGGAGATGCTGCACAGACA 59.702 57.895 3.57 0.00 0.00 3.41
1312 2419 1.451028 GGGGAGATGCTGCACAGAC 60.451 63.158 3.57 0.00 0.00 3.51
1313 2420 1.919816 TGGGGAGATGCTGCACAGA 60.920 57.895 3.57 0.00 28.26 3.41
1314 2421 1.748122 GTGGGGAGATGCTGCACAG 60.748 63.158 3.57 0.00 35.54 3.66
1315 2422 2.352422 GTGGGGAGATGCTGCACA 59.648 61.111 3.57 0.00 31.52 4.57
1316 2423 2.042831 GTGTGGGGAGATGCTGCAC 61.043 63.158 3.57 0.00 0.00 4.57
1317 2424 2.352422 GTGTGGGGAGATGCTGCA 59.648 61.111 4.13 4.13 0.00 4.41
1318 2425 2.439156 GGTGTGGGGAGATGCTGC 60.439 66.667 0.00 0.00 0.00 5.25
1319 2426 2.124983 CGGTGTGGGGAGATGCTG 60.125 66.667 0.00 0.00 0.00 4.41
1320 2427 4.101448 GCGGTGTGGGGAGATGCT 62.101 66.667 0.00 0.00 0.00 3.79
1357 2466 1.794437 CGTTGCGTAGGTACTCTGCTC 60.794 57.143 0.00 0.00 41.75 4.26
1365 2474 0.799152 CATCGTGCGTTGCGTAGGTA 60.799 55.000 0.00 0.00 0.00 3.08
1366 2475 2.092291 CATCGTGCGTTGCGTAGGT 61.092 57.895 0.00 0.00 0.00 3.08
1701 2840 3.144657 TGATCGATGGATTGATTGGGG 57.855 47.619 0.54 0.00 31.12 4.96
1733 2872 6.101997 TGAGGCTATATATTGTTCATCGCTG 58.898 40.000 0.00 0.00 0.00 5.18
1804 2943 4.896080 TGCGCGTGAATGCATTATATATG 58.104 39.130 12.97 6.17 35.90 1.78
1808 2947 3.249559 TGATTGCGCGTGAATGCATTATA 59.750 39.130 12.97 1.48 41.42 0.98
1809 2948 2.033174 TGATTGCGCGTGAATGCATTAT 59.967 40.909 12.97 0.00 41.42 1.28
1810 2949 1.399791 TGATTGCGCGTGAATGCATTA 59.600 42.857 12.97 0.00 41.42 1.90
1811 2950 0.170784 TGATTGCGCGTGAATGCATT 59.829 45.000 12.83 12.83 41.42 3.56
1812 2951 0.170784 TTGATTGCGCGTGAATGCAT 59.829 45.000 8.43 0.00 41.42 3.96
1814 2953 1.736249 GCTTGATTGCGCGTGAATGC 61.736 55.000 8.43 3.25 0.00 3.56
1817 2956 1.082690 TATGCTTGATTGCGCGTGAA 58.917 45.000 8.43 0.78 35.36 3.18
1818 2957 0.373370 GTATGCTTGATTGCGCGTGA 59.627 50.000 8.43 0.00 35.36 4.35
1819 2958 0.374758 AGTATGCTTGATTGCGCGTG 59.625 50.000 8.43 0.00 35.36 5.34
1820 2959 0.374758 CAGTATGCTTGATTGCGCGT 59.625 50.000 8.43 0.00 35.36 6.01
1821 2960 3.138296 CAGTATGCTTGATTGCGCG 57.862 52.632 0.00 0.00 35.36 6.86
1833 2972 4.067896 GGGTGGAATGTCTATGCAGTATG 58.932 47.826 0.00 0.00 40.87 2.39
1834 2973 3.073062 GGGGTGGAATGTCTATGCAGTAT 59.927 47.826 0.00 0.00 0.00 2.12
1835 2974 2.438021 GGGGTGGAATGTCTATGCAGTA 59.562 50.000 0.00 0.00 0.00 2.74
1836 2975 1.212935 GGGGTGGAATGTCTATGCAGT 59.787 52.381 0.00 0.00 0.00 4.40
1837 2976 1.811558 CGGGGTGGAATGTCTATGCAG 60.812 57.143 0.00 0.00 0.00 4.41
1838 2977 0.180171 CGGGGTGGAATGTCTATGCA 59.820 55.000 0.00 0.00 0.00 3.96
1839 2978 0.535102 CCGGGGTGGAATGTCTATGC 60.535 60.000 0.00 0.00 42.00 3.14
1840 2979 0.535102 GCCGGGGTGGAATGTCTATG 60.535 60.000 2.18 0.00 42.00 2.23
1841 2980 1.705997 GGCCGGGGTGGAATGTCTAT 61.706 60.000 2.18 0.00 42.00 1.98
1842 2981 2.372074 GGCCGGGGTGGAATGTCTA 61.372 63.158 2.18 0.00 42.00 2.59
1843 2982 3.728373 GGCCGGGGTGGAATGTCT 61.728 66.667 2.18 0.00 42.00 3.41
1844 2983 4.815108 GGGCCGGGGTGGAATGTC 62.815 72.222 2.18 0.00 42.00 3.06
1864 3003 4.989875 ATTCATTCATACCTGAGAGGGG 57.010 45.455 0.00 0.00 40.58 4.79
1886 3025 9.565213 GTGAAACGTAGTAGTACAACTGATATT 57.435 33.333 8.43 0.00 45.00 1.28
1887 3026 8.954350 AGTGAAACGTAGTAGTACAACTGATAT 58.046 33.333 8.43 0.00 45.00 1.63
1888 3027 8.327941 AGTGAAACGTAGTAGTACAACTGATA 57.672 34.615 8.43 0.00 45.00 2.15
1889 3028 7.211966 AGTGAAACGTAGTAGTACAACTGAT 57.788 36.000 8.43 0.00 45.00 2.90
1891 3030 5.562998 CGAGTGAAACGTAGTAGTACAACTG 59.437 44.000 8.43 0.00 45.00 3.16
1892 3031 5.466728 TCGAGTGAAACGTAGTAGTACAACT 59.533 40.000 8.43 3.38 45.00 3.16
1893 3032 5.561873 GTCGAGTGAAACGTAGTAGTACAAC 59.438 44.000 8.43 0.00 45.00 3.32
1894 3033 5.334105 GGTCGAGTGAAACGTAGTAGTACAA 60.334 44.000 8.43 0.00 45.00 2.41
1895 3034 4.152402 GGTCGAGTGAAACGTAGTAGTACA 59.848 45.833 8.43 0.00 45.00 2.90
1897 3036 3.684788 GGGTCGAGTGAAACGTAGTAGTA 59.315 47.826 0.00 0.00 45.00 1.82
1898 3037 2.485814 GGGTCGAGTGAAACGTAGTAGT 59.514 50.000 0.00 0.00 45.00 2.73
1899 3038 2.475187 CGGGTCGAGTGAAACGTAGTAG 60.475 54.545 0.00 0.00 45.00 2.57
1904 3043 0.595825 GAACGGGTCGAGTGAAACGT 60.596 55.000 0.00 0.00 45.86 3.99
1912 3051 0.450983 GTCTAGTGGAACGGGTCGAG 59.549 60.000 0.00 0.00 45.86 4.04
1919 3058 2.434134 GCGTGCGTCTAGTGGAACG 61.434 63.158 10.65 10.65 45.86 3.95
1922 3061 3.035576 CTCGCGTGCGTCTAGTGGA 62.036 63.158 14.47 0.00 40.74 4.02
1924 3063 3.241059 GCTCGCGTGCGTCTAGTG 61.241 66.667 18.06 0.88 40.74 2.74
1932 3071 2.021931 GCATACAAGCTCGCGTGC 59.978 61.111 24.56 24.56 0.00 5.34
1933 3072 3.786101 AGCATACAAGCTCGCGTG 58.214 55.556 5.77 4.44 42.18 5.34
1942 3081 6.071391 TCACTAGTCATCACTTGAGCATACAA 60.071 38.462 0.00 0.00 34.17 2.41
1951 3090 9.242477 CTGTGTATATTCACTAGTCATCACTTG 57.758 37.037 12.92 0.00 38.90 3.16
1957 3096 6.703607 GCAAGCTGTGTATATTCACTAGTCAT 59.296 38.462 12.92 0.00 38.90 3.06
1958 3097 6.042777 GCAAGCTGTGTATATTCACTAGTCA 58.957 40.000 12.92 0.00 38.90 3.41
1959 3098 6.276847 AGCAAGCTGTGTATATTCACTAGTC 58.723 40.000 12.92 6.30 38.90 2.59
1960 3099 6.227298 AGCAAGCTGTGTATATTCACTAGT 57.773 37.500 12.92 0.00 38.90 2.57
1961 3100 8.824159 AATAGCAAGCTGTGTATATTCACTAG 57.176 34.615 12.92 9.69 38.90 2.57
1963 3102 9.212641 CATAATAGCAAGCTGTGTATATTCACT 57.787 33.333 12.92 0.00 38.90 3.41
1989 3128 8.621532 TGGGATAGAATCATTATGTAAAGCAC 57.378 34.615 0.00 0.00 0.00 4.40
1996 3135 8.888419 ACAGAGAATGGGATAGAATCATTATGT 58.112 33.333 0.00 0.00 32.05 2.29
1997 3136 9.163899 CACAGAGAATGGGATAGAATCATTATG 57.836 37.037 0.00 0.00 32.10 1.90
2008 3153 4.042809 ACCACAAACACAGAGAATGGGATA 59.957 41.667 0.00 0.00 35.10 2.59
2009 3154 3.181429 ACCACAAACACAGAGAATGGGAT 60.181 43.478 0.00 0.00 35.10 3.85
2015 3160 4.569162 CGTTAGAACCACAAACACAGAGAA 59.431 41.667 0.00 0.00 0.00 2.87
2023 3168 3.362693 CGCTCTTCGTTAGAACCACAAAC 60.363 47.826 0.00 0.00 30.91 2.93
2025 3170 2.034939 TCGCTCTTCGTTAGAACCACAA 59.965 45.455 0.00 0.00 39.67 3.33
2041 3209 2.605366 GGAGTACTGCATTTTCTCGCTC 59.395 50.000 9.84 0.00 0.00 5.03
2054 3222 0.824109 TGCGAATGGAGGGAGTACTG 59.176 55.000 0.00 0.00 0.00 2.74
2061 3229 4.703897 TCTTAGTATTTGCGAATGGAGGG 58.296 43.478 9.60 0.00 0.00 4.30
2066 3234 9.638300 GTTAGAACATCTTAGTATTTGCGAATG 57.362 33.333 9.60 0.00 0.00 2.67
2067 3235 9.378551 TGTTAGAACATCTTAGTATTTGCGAAT 57.621 29.630 4.21 4.21 33.17 3.34
2133 3301 7.271223 GTGGACTGAAATGAATGAACAAATACG 59.729 37.037 0.00 0.00 0.00 3.06
2135 3303 8.175925 TGTGGACTGAAATGAATGAACAAATA 57.824 30.769 0.00 0.00 0.00 1.40
2159 3327 9.770097 ATATAAGATGGTGCGGATATTCTTATG 57.230 33.333 19.16 0.00 33.15 1.90
2164 3332 8.177663 CACAAATATAAGATGGTGCGGATATTC 58.822 37.037 0.00 0.00 0.00 1.75
2172 3343 7.013655 ACTCCATTCACAAATATAAGATGGTGC 59.986 37.037 0.00 0.00 0.00 5.01
2193 3364 8.253867 TGTTCTTTTTAGGAAGTACTACTCCA 57.746 34.615 14.68 0.39 30.88 3.86
2207 3378 6.624423 CCCTTGGATGACATGTTCTTTTTAG 58.376 40.000 0.00 0.00 0.00 1.85
2324 3495 2.243957 CCTTCAGACGTGCGTTGCA 61.244 57.895 0.00 0.00 35.60 4.08
2325 3496 1.891060 CTCCTTCAGACGTGCGTTGC 61.891 60.000 0.00 0.00 0.00 4.17
2326 3497 1.891060 GCTCCTTCAGACGTGCGTTG 61.891 60.000 0.00 0.30 0.00 4.10
2327 3498 1.664965 GCTCCTTCAGACGTGCGTT 60.665 57.895 0.00 0.00 0.00 4.84
2328 3499 2.049063 GCTCCTTCAGACGTGCGT 60.049 61.111 0.00 0.00 0.00 5.24
2329 3500 1.221466 TTTGCTCCTTCAGACGTGCG 61.221 55.000 0.00 0.00 0.00 5.34
2330 3501 0.235926 GTTTGCTCCTTCAGACGTGC 59.764 55.000 0.00 0.00 0.00 5.34
2331 3502 1.871080 AGTTTGCTCCTTCAGACGTG 58.129 50.000 0.00 0.00 0.00 4.49
2332 3503 3.963428 ATAGTTTGCTCCTTCAGACGT 57.037 42.857 0.00 0.00 0.00 4.34
2333 3504 4.245660 TGAATAGTTTGCTCCTTCAGACG 58.754 43.478 0.00 0.00 0.00 4.18
2334 3505 6.749923 AATGAATAGTTTGCTCCTTCAGAC 57.250 37.500 0.00 0.00 33.16 3.51
2335 3506 8.267183 TGATAATGAATAGTTTGCTCCTTCAGA 58.733 33.333 0.00 0.00 33.16 3.27
2336 3507 8.442632 TGATAATGAATAGTTTGCTCCTTCAG 57.557 34.615 0.00 0.00 33.16 3.02
2337 3508 8.985315 ATGATAATGAATAGTTTGCTCCTTCA 57.015 30.769 0.00 0.00 33.74 3.02
2338 3509 9.060347 TGATGATAATGAATAGTTTGCTCCTTC 57.940 33.333 0.00 0.00 0.00 3.46
2339 3510 8.985315 TGATGATAATGAATAGTTTGCTCCTT 57.015 30.769 0.00 0.00 0.00 3.36
2340 3511 8.985315 TTGATGATAATGAATAGTTTGCTCCT 57.015 30.769 0.00 0.00 0.00 3.69
2373 3544 9.247861 ACAGAGCTTATGATATTTTTCCTTTGT 57.752 29.630 6.86 0.00 0.00 2.83
2405 3576 9.210329 TGCAACTCGTAGTTCATTATTTTTCTA 57.790 29.630 0.00 0.00 36.03 2.10
2406 3577 8.094798 TGCAACTCGTAGTTCATTATTTTTCT 57.905 30.769 0.00 0.00 36.03 2.52
2407 3578 8.722342 TTGCAACTCGTAGTTCATTATTTTTC 57.278 30.769 0.00 0.00 36.03 2.29
2408 3579 9.522804 TTTTGCAACTCGTAGTTCATTATTTTT 57.477 25.926 0.00 0.00 36.03 1.94
2409 3580 9.522804 TTTTTGCAACTCGTAGTTCATTATTTT 57.477 25.926 0.00 0.00 36.03 1.82
2410 3581 9.691362 ATTTTTGCAACTCGTAGTTCATTATTT 57.309 25.926 0.00 0.00 36.03 1.40
2414 3585 9.691362 AAATATTTTTGCAACTCGTAGTTCATT 57.309 25.926 0.00 0.00 36.03 2.57
2415 3586 9.128107 CAAATATTTTTGCAACTCGTAGTTCAT 57.872 29.630 0.00 0.00 33.05 2.57
2416 3587 8.132362 ACAAATATTTTTGCAACTCGTAGTTCA 58.868 29.630 0.00 0.00 45.01 3.18
2417 3588 8.502161 ACAAATATTTTTGCAACTCGTAGTTC 57.498 30.769 0.00 0.00 45.01 3.01
2418 3589 7.593644 GGACAAATATTTTTGCAACTCGTAGTT 59.406 33.333 0.00 0.00 45.01 2.24
2419 3590 7.040686 AGGACAAATATTTTTGCAACTCGTAGT 60.041 33.333 0.00 0.00 45.01 2.73
2420 3591 7.305474 AGGACAAATATTTTTGCAACTCGTAG 58.695 34.615 0.00 0.00 45.01 3.51
2421 3592 7.209471 AGGACAAATATTTTTGCAACTCGTA 57.791 32.000 0.00 0.00 45.01 3.43
2422 3593 6.084326 AGGACAAATATTTTTGCAACTCGT 57.916 33.333 0.00 0.00 45.01 4.18
2423 3594 8.687824 ATAAGGACAAATATTTTTGCAACTCG 57.312 30.769 0.00 0.00 45.01 4.18
2427 3598 9.868277 CCAGTATAAGGACAAATATTTTTGCAA 57.132 29.630 8.35 0.00 45.01 4.08
2428 3599 7.978975 GCCAGTATAAGGACAAATATTTTTGCA 59.021 33.333 8.35 0.00 45.01 4.08
2429 3600 7.978975 TGCCAGTATAAGGACAAATATTTTTGC 59.021 33.333 8.35 0.00 45.01 3.68
2430 3601 9.520204 CTGCCAGTATAAGGACAAATATTTTTG 57.480 33.333 7.04 7.04 46.27 2.44
2431 3602 9.474313 TCTGCCAGTATAAGGACAAATATTTTT 57.526 29.630 0.00 0.00 0.00 1.94
2432 3603 9.474313 TTCTGCCAGTATAAGGACAAATATTTT 57.526 29.630 0.00 0.00 0.00 1.82
2433 3604 9.474313 TTTCTGCCAGTATAAGGACAAATATTT 57.526 29.630 0.00 0.00 0.00 1.40
2434 3605 8.903820 GTTTCTGCCAGTATAAGGACAAATATT 58.096 33.333 0.00 0.00 0.00 1.28
2435 3606 8.052748 TGTTTCTGCCAGTATAAGGACAAATAT 58.947 33.333 0.00 0.00 0.00 1.28
2436 3607 7.398829 TGTTTCTGCCAGTATAAGGACAAATA 58.601 34.615 0.00 0.00 0.00 1.40
2437 3608 6.245408 TGTTTCTGCCAGTATAAGGACAAAT 58.755 36.000 0.00 0.00 0.00 2.32
2438 3609 5.626142 TGTTTCTGCCAGTATAAGGACAAA 58.374 37.500 0.00 0.00 0.00 2.83
2439 3610 5.235850 TGTTTCTGCCAGTATAAGGACAA 57.764 39.130 0.00 0.00 0.00 3.18
2440 3611 4.901197 TGTTTCTGCCAGTATAAGGACA 57.099 40.909 0.00 0.00 0.00 4.02
2441 3612 4.095036 GCTTGTTTCTGCCAGTATAAGGAC 59.905 45.833 0.00 0.00 0.00 3.85
2442 3613 4.261801 GCTTGTTTCTGCCAGTATAAGGA 58.738 43.478 0.00 0.00 0.00 3.36
2443 3614 4.009675 TGCTTGTTTCTGCCAGTATAAGG 58.990 43.478 0.00 0.00 0.00 2.69
2444 3615 5.824904 ATGCTTGTTTCTGCCAGTATAAG 57.175 39.130 0.00 0.00 0.00 1.73
2445 3616 6.414732 AGTATGCTTGTTTCTGCCAGTATAA 58.585 36.000 0.00 0.00 0.00 0.98
2446 3617 5.989477 AGTATGCTTGTTTCTGCCAGTATA 58.011 37.500 0.00 0.00 0.00 1.47
2447 3618 4.848357 AGTATGCTTGTTTCTGCCAGTAT 58.152 39.130 0.00 0.00 0.00 2.12
2448 3619 4.286297 AGTATGCTTGTTTCTGCCAGTA 57.714 40.909 0.00 0.00 0.00 2.74
2449 3620 3.146104 AGTATGCTTGTTTCTGCCAGT 57.854 42.857 0.00 0.00 0.00 4.00
2450 3621 3.829948 CAAGTATGCTTGTTTCTGCCAG 58.170 45.455 14.75 0.00 45.18 4.85
2451 3622 3.921119 CAAGTATGCTTGTTTCTGCCA 57.079 42.857 14.75 0.00 45.18 4.92
2464 3635 5.611796 TTTTGTGCTACTCTGCAAGTATG 57.388 39.130 8.55 5.69 45.12 2.39
2465 3636 4.154918 GCTTTTGTGCTACTCTGCAAGTAT 59.845 41.667 8.55 0.00 45.12 2.12
2466 3637 3.498397 GCTTTTGTGCTACTCTGCAAGTA 59.502 43.478 8.02 8.02 45.12 2.24
2467 3638 2.291741 GCTTTTGTGCTACTCTGCAAGT 59.708 45.455 6.74 6.74 45.12 3.16
2468 3639 2.291465 TGCTTTTGTGCTACTCTGCAAG 59.709 45.455 0.00 0.00 45.12 4.01
2469 3640 2.296792 TGCTTTTGTGCTACTCTGCAA 58.703 42.857 0.00 0.00 45.12 4.08
2470 3641 1.965935 TGCTTTTGTGCTACTCTGCA 58.034 45.000 0.00 0.00 41.05 4.41
2471 3642 3.565905 ATTGCTTTTGTGCTACTCTGC 57.434 42.857 0.00 0.00 0.00 4.26
2472 3643 5.570589 GCTTTATTGCTTTTGTGCTACTCTG 59.429 40.000 0.00 0.00 0.00 3.35
2473 3644 5.335976 GGCTTTATTGCTTTTGTGCTACTCT 60.336 40.000 0.00 0.00 0.00 3.24
2474 3645 4.859245 GGCTTTATTGCTTTTGTGCTACTC 59.141 41.667 0.00 0.00 0.00 2.59
2475 3646 4.280677 TGGCTTTATTGCTTTTGTGCTACT 59.719 37.500 0.00 0.00 0.00 2.57
2476 3647 4.555262 TGGCTTTATTGCTTTTGTGCTAC 58.445 39.130 0.00 0.00 0.00 3.58
2477 3648 4.862902 TGGCTTTATTGCTTTTGTGCTA 57.137 36.364 0.00 0.00 0.00 3.49
2478 3649 3.749665 TGGCTTTATTGCTTTTGTGCT 57.250 38.095 0.00 0.00 0.00 4.40
2479 3650 4.809815 TTTGGCTTTATTGCTTTTGTGC 57.190 36.364 0.00 0.00 0.00 4.57
2499 3670 5.163602 TGCAACGGAGAGTGTTTGTATTTTT 60.164 36.000 0.00 0.00 0.00 1.94
2500 3671 4.336993 TGCAACGGAGAGTGTTTGTATTTT 59.663 37.500 0.00 0.00 0.00 1.82
2501 3672 3.880490 TGCAACGGAGAGTGTTTGTATTT 59.120 39.130 0.00 0.00 0.00 1.40
2502 3673 3.472652 TGCAACGGAGAGTGTTTGTATT 58.527 40.909 0.00 0.00 0.00 1.89
2503 3674 3.067106 CTGCAACGGAGAGTGTTTGTAT 58.933 45.455 0.00 0.00 0.00 2.29
2504 3675 2.101750 TCTGCAACGGAGAGTGTTTGTA 59.898 45.455 0.00 0.00 0.00 2.41
2505 3676 1.134521 TCTGCAACGGAGAGTGTTTGT 60.135 47.619 0.00 0.00 0.00 2.83
2506 3677 1.528586 CTCTGCAACGGAGAGTGTTTG 59.471 52.381 4.50 0.00 39.05 2.93
2507 3678 1.871080 CTCTGCAACGGAGAGTGTTT 58.129 50.000 4.50 0.00 39.05 2.83
2508 3679 0.601311 GCTCTGCAACGGAGAGTGTT 60.601 55.000 13.14 0.00 39.05 3.32
2509 3680 1.005630 GCTCTGCAACGGAGAGTGT 60.006 57.895 13.14 0.00 39.05 3.55
2510 3681 0.601046 TTGCTCTGCAACGGAGAGTG 60.601 55.000 13.14 0.00 43.99 3.51
2511 3682 0.320247 CTTGCTCTGCAACGGAGAGT 60.320 55.000 13.14 0.00 43.99 3.24
2512 3683 0.320247 ACTTGCTCTGCAACGGAGAG 60.320 55.000 7.61 8.04 43.99 3.20
2513 3684 0.319900 GACTTGCTCTGCAACGGAGA 60.320 55.000 7.61 0.00 43.99 3.71
2514 3685 0.320247 AGACTTGCTCTGCAACGGAG 60.320 55.000 0.45 0.00 43.99 4.63
2515 3686 0.106708 AAGACTTGCTCTGCAACGGA 59.893 50.000 0.45 0.00 43.99 4.69
2516 3687 1.795768 TAAGACTTGCTCTGCAACGG 58.204 50.000 0.45 0.00 43.99 4.44
2517 3688 3.248602 AGTTTAAGACTTGCTCTGCAACG 59.751 43.478 0.45 1.45 43.99 4.10
2518 3689 4.820284 AGTTTAAGACTTGCTCTGCAAC 57.180 40.909 0.45 0.00 43.99 4.17
2519 3690 6.288294 TCTTAGTTTAAGACTTGCTCTGCAA 58.712 36.000 4.87 4.87 41.73 4.08
2520 3691 5.853936 TCTTAGTTTAAGACTTGCTCTGCA 58.146 37.500 0.00 0.00 39.73 4.41
2521 3692 6.976636 ATCTTAGTTTAAGACTTGCTCTGC 57.023 37.500 0.00 0.00 46.58 4.26
2553 3724 9.520515 AGGTGAAGAATAATAAGCTTGAGAAAA 57.479 29.630 9.86 0.00 0.00 2.29
2554 3725 9.167311 GAGGTGAAGAATAATAAGCTTGAGAAA 57.833 33.333 9.86 0.00 0.00 2.52
2555 3726 7.770897 GGAGGTGAAGAATAATAAGCTTGAGAA 59.229 37.037 9.86 0.00 0.00 2.87
2556 3727 7.275920 GGAGGTGAAGAATAATAAGCTTGAGA 58.724 38.462 9.86 0.00 0.00 3.27
2557 3728 6.484977 GGGAGGTGAAGAATAATAAGCTTGAG 59.515 42.308 9.86 0.00 0.00 3.02
2558 3729 6.069673 TGGGAGGTGAAGAATAATAAGCTTGA 60.070 38.462 9.86 0.00 0.00 3.02
2559 3730 6.122277 TGGGAGGTGAAGAATAATAAGCTTG 58.878 40.000 9.86 0.00 0.00 4.01
2560 3731 6.327386 TGGGAGGTGAAGAATAATAAGCTT 57.673 37.500 3.48 3.48 0.00 3.74
2561 3732 5.975988 TGGGAGGTGAAGAATAATAAGCT 57.024 39.130 0.00 0.00 0.00 3.74
2562 3733 5.532779 CCTTGGGAGGTGAAGAATAATAAGC 59.467 44.000 0.00 0.00 38.32 3.09
2578 3749 0.693049 AAGCTGGTGTACCTTGGGAG 59.307 55.000 2.32 0.00 36.82 4.30
2579 3750 0.690762 GAAGCTGGTGTACCTTGGGA 59.309 55.000 2.32 0.00 36.82 4.37
2580 3751 0.673644 CGAAGCTGGTGTACCTTGGG 60.674 60.000 2.32 0.00 36.82 4.12
2581 3752 0.034896 ACGAAGCTGGTGTACCTTGG 59.965 55.000 2.32 0.00 36.82 3.61
2582 3753 1.878953 AACGAAGCTGGTGTACCTTG 58.121 50.000 2.32 0.00 36.82 3.61
2583 3754 2.218603 CAAACGAAGCTGGTGTACCTT 58.781 47.619 2.32 0.00 36.82 3.50
2584 3755 1.878953 CAAACGAAGCTGGTGTACCT 58.121 50.000 2.32 0.00 36.82 3.08
2585 3756 0.237498 GCAAACGAAGCTGGTGTACC 59.763 55.000 0.00 0.00 0.00 3.34
2586 3757 0.941542 TGCAAACGAAGCTGGTGTAC 59.058 50.000 0.00 0.00 0.00 2.90
2587 3758 0.941542 GTGCAAACGAAGCTGGTGTA 59.058 50.000 0.00 0.00 0.00 2.90
2588 3759 0.748005 AGTGCAAACGAAGCTGGTGT 60.748 50.000 0.00 0.00 0.00 4.16
2589 3760 0.040958 GAGTGCAAACGAAGCTGGTG 60.041 55.000 0.00 0.00 0.00 4.17
2590 3761 1.166531 GGAGTGCAAACGAAGCTGGT 61.167 55.000 0.00 0.00 0.00 4.00
2591 3762 1.165907 TGGAGTGCAAACGAAGCTGG 61.166 55.000 0.00 0.00 0.00 4.85
2592 3763 0.662619 TTGGAGTGCAAACGAAGCTG 59.337 50.000 0.00 0.00 0.00 4.24
2593 3764 1.334869 CTTTGGAGTGCAAACGAAGCT 59.665 47.619 5.61 0.00 0.00 3.74
2594 3765 1.333619 TCTTTGGAGTGCAAACGAAGC 59.666 47.619 5.61 0.00 0.00 3.86
2595 3766 3.065371 ACTTCTTTGGAGTGCAAACGAAG 59.935 43.478 27.57 27.57 35.48 3.79
2596 3767 3.013921 ACTTCTTTGGAGTGCAAACGAA 58.986 40.909 5.61 12.15 0.00 3.85
2597 3768 2.639065 ACTTCTTTGGAGTGCAAACGA 58.361 42.857 5.61 5.58 0.00 3.85
2598 3769 4.545823 TTACTTCTTTGGAGTGCAAACG 57.454 40.909 5.61 3.36 0.00 3.60
2599 3770 5.009610 TGGATTACTTCTTTGGAGTGCAAAC 59.990 40.000 5.61 0.00 0.00 2.93
2600 3771 5.136828 TGGATTACTTCTTTGGAGTGCAAA 58.863 37.500 9.62 9.62 0.00 3.68
2601 3772 4.724399 TGGATTACTTCTTTGGAGTGCAA 58.276 39.130 0.00 0.00 0.00 4.08
2602 3773 4.326826 CTGGATTACTTCTTTGGAGTGCA 58.673 43.478 0.00 0.00 0.00 4.57
2603 3774 3.127721 GCTGGATTACTTCTTTGGAGTGC 59.872 47.826 0.00 0.00 0.00 4.40
2604 3775 4.326826 TGCTGGATTACTTCTTTGGAGTG 58.673 43.478 0.00 0.00 0.00 3.51
2605 3776 4.640771 TGCTGGATTACTTCTTTGGAGT 57.359 40.909 0.00 0.00 0.00 3.85
2606 3777 7.050377 TCTTATGCTGGATTACTTCTTTGGAG 58.950 38.462 0.00 0.00 0.00 3.86
2607 3778 6.957631 TCTTATGCTGGATTACTTCTTTGGA 58.042 36.000 0.00 0.00 0.00 3.53
2608 3779 7.630242 TTCTTATGCTGGATTACTTCTTTGG 57.370 36.000 0.00 0.00 0.00 3.28
2611 3782 9.771534 GAGTATTCTTATGCTGGATTACTTCTT 57.228 33.333 0.00 0.00 32.41 2.52
2612 3783 8.371699 GGAGTATTCTTATGCTGGATTACTTCT 58.628 37.037 0.00 0.00 32.41 2.85
2613 3784 7.604545 GGGAGTATTCTTATGCTGGATTACTTC 59.395 40.741 0.00 0.00 32.41 3.01
2614 3785 7.454225 GGGAGTATTCTTATGCTGGATTACTT 58.546 38.462 0.00 0.00 32.41 2.24
2615 3786 6.295349 CGGGAGTATTCTTATGCTGGATTACT 60.295 42.308 0.00 0.00 33.88 2.24
2616 3787 5.869888 CGGGAGTATTCTTATGCTGGATTAC 59.130 44.000 0.00 0.00 0.00 1.89
2617 3788 5.778241 TCGGGAGTATTCTTATGCTGGATTA 59.222 40.000 0.00 0.00 0.00 1.75
2618 3789 4.593206 TCGGGAGTATTCTTATGCTGGATT 59.407 41.667 0.00 0.00 0.00 3.01
2619 3790 4.160329 TCGGGAGTATTCTTATGCTGGAT 58.840 43.478 0.00 0.00 0.00 3.41
2620 3791 3.572642 TCGGGAGTATTCTTATGCTGGA 58.427 45.455 0.00 0.00 0.00 3.86
2621 3792 4.248859 CATCGGGAGTATTCTTATGCTGG 58.751 47.826 0.00 0.00 0.00 4.85
2622 3793 3.681897 GCATCGGGAGTATTCTTATGCTG 59.318 47.826 0.00 0.00 36.27 4.41
2623 3794 3.324846 TGCATCGGGAGTATTCTTATGCT 59.675 43.478 15.39 0.00 39.13 3.79
2624 3795 3.664107 TGCATCGGGAGTATTCTTATGC 58.336 45.455 10.69 10.69 38.90 3.14
2625 3796 4.093998 GCATGCATCGGGAGTATTCTTATG 59.906 45.833 14.21 0.00 0.00 1.90
2626 3797 4.019860 AGCATGCATCGGGAGTATTCTTAT 60.020 41.667 21.98 0.00 0.00 1.73
2627 3798 3.324846 AGCATGCATCGGGAGTATTCTTA 59.675 43.478 21.98 0.00 0.00 2.10
2628 3799 2.105477 AGCATGCATCGGGAGTATTCTT 59.895 45.455 21.98 0.00 0.00 2.52
2629 3800 1.696336 AGCATGCATCGGGAGTATTCT 59.304 47.619 21.98 0.00 0.00 2.40
2630 3801 2.175878 AGCATGCATCGGGAGTATTC 57.824 50.000 21.98 0.00 0.00 1.75
2631 3802 3.324846 TCTTAGCATGCATCGGGAGTATT 59.675 43.478 21.98 0.00 0.00 1.89
2632 3803 2.899900 TCTTAGCATGCATCGGGAGTAT 59.100 45.455 21.98 0.00 0.00 2.12
2633 3804 2.316108 TCTTAGCATGCATCGGGAGTA 58.684 47.619 21.98 0.00 0.00 2.59
2634 3805 1.123077 TCTTAGCATGCATCGGGAGT 58.877 50.000 21.98 0.00 0.00 3.85
2635 3806 2.245159 TTCTTAGCATGCATCGGGAG 57.755 50.000 21.98 7.93 0.00 4.30
2636 3807 2.564771 CTTTCTTAGCATGCATCGGGA 58.435 47.619 21.98 7.56 0.00 5.14
2650 3821 8.831550 GCTTACTAATGCTATACTTGCTTTCTT 58.168 33.333 0.00 0.00 0.00 2.52
2651 3822 7.987458 TGCTTACTAATGCTATACTTGCTTTCT 59.013 33.333 0.00 0.00 0.00 2.52
2652 3823 8.142994 TGCTTACTAATGCTATACTTGCTTTC 57.857 34.615 0.00 0.00 0.00 2.62
2653 3824 8.562892 CATGCTTACTAATGCTATACTTGCTTT 58.437 33.333 0.00 0.00 0.00 3.51
2654 3825 7.933577 TCATGCTTACTAATGCTATACTTGCTT 59.066 33.333 0.00 0.00 0.00 3.91
2655 3826 7.445121 TCATGCTTACTAATGCTATACTTGCT 58.555 34.615 0.00 0.00 0.00 3.91
2656 3827 7.658179 TCATGCTTACTAATGCTATACTTGC 57.342 36.000 0.00 0.00 0.00 4.01
2659 3830 9.784531 ACAATTCATGCTTACTAATGCTATACT 57.215 29.630 0.00 0.00 0.00 2.12
2670 3841 9.618890 ATGTCAGTATTACAATTCATGCTTACT 57.381 29.630 0.00 0.00 0.00 2.24
2671 3842 9.655769 CATGTCAGTATTACAATTCATGCTTAC 57.344 33.333 0.00 0.00 0.00 2.34
2672 3843 9.612066 TCATGTCAGTATTACAATTCATGCTTA 57.388 29.630 0.00 0.00 33.74 3.09
2673 3844 8.510243 TCATGTCAGTATTACAATTCATGCTT 57.490 30.769 0.00 0.00 33.74 3.91
2674 3845 7.989170 TCTCATGTCAGTATTACAATTCATGCT 59.011 33.333 0.00 0.00 33.74 3.79
2675 3846 8.146479 TCTCATGTCAGTATTACAATTCATGC 57.854 34.615 0.00 0.00 33.74 4.06
2682 3853 9.591792 CTCTGATTTCTCATGTCAGTATTACAA 57.408 33.333 9.38 0.00 40.13 2.41
2683 3854 8.971073 TCTCTGATTTCTCATGTCAGTATTACA 58.029 33.333 9.38 0.00 40.13 2.41
2684 3855 9.979578 ATCTCTGATTTCTCATGTCAGTATTAC 57.020 33.333 9.38 0.00 40.13 1.89
2688 3859 9.359653 TGATATCTCTGATTTCTCATGTCAGTA 57.640 33.333 3.98 1.97 40.13 2.74
2689 3860 8.247666 TGATATCTCTGATTTCTCATGTCAGT 57.752 34.615 3.98 0.00 40.13 3.41
2690 3861 9.713713 AATGATATCTCTGATTTCTCATGTCAG 57.286 33.333 3.98 4.32 40.48 3.51
2717 3888 7.553044 GCCAGTCCTAACAAATATAGTCAAACT 59.447 37.037 0.00 0.00 0.00 2.66
2718 3889 7.553044 AGCCAGTCCTAACAAATATAGTCAAAC 59.447 37.037 0.00 0.00 0.00 2.93
2719 3890 7.630082 AGCCAGTCCTAACAAATATAGTCAAA 58.370 34.615 0.00 0.00 0.00 2.69
2720 3891 7.125811 AGAGCCAGTCCTAACAAATATAGTCAA 59.874 37.037 0.00 0.00 0.00 3.18
2721 3892 6.611642 AGAGCCAGTCCTAACAAATATAGTCA 59.388 38.462 0.00 0.00 0.00 3.41
2722 3893 7.056844 AGAGCCAGTCCTAACAAATATAGTC 57.943 40.000 0.00 0.00 0.00 2.59
2723 3894 8.728596 ATAGAGCCAGTCCTAACAAATATAGT 57.271 34.615 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.