Multiple sequence alignment - TraesCS3B01G477200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G477200 chr3B 100.000 5768 0 0 1 5768 725701874 725707641 0.000000e+00 10652.0
1 TraesCS3B01G477200 chr3D 93.997 3848 148 32 401 4226 548242151 548245937 0.000000e+00 5749.0
2 TraesCS3B01G477200 chr3D 96.016 728 29 0 4276 5003 548245922 548246649 0.000000e+00 1184.0
3 TraesCS3B01G477200 chr3D 85.466 805 57 26 5005 5768 548246698 548247483 0.000000e+00 784.0
4 TraesCS3B01G477200 chr3D 80.667 300 47 7 1684 1981 329709717 329710007 7.520000e-54 222.0
5 TraesCS3B01G477200 chr3A 94.979 3545 135 20 708 4226 685115119 685118646 0.000000e+00 5520.0
6 TraesCS3B01G477200 chr3A 95.210 1503 58 7 4276 5768 685118631 685120129 0.000000e+00 2364.0
7 TraesCS3B01G477200 chr3A 86.486 296 31 6 407 698 685114758 685115048 3.350000e-82 316.0
8 TraesCS3B01G477200 chr3A 96.078 51 1 1 4224 4274 210943455 210943406 1.330000e-11 82.4
9 TraesCS3B01G477200 chr7B 95.771 402 14 2 3224 3624 603669425 603669026 0.000000e+00 645.0
10 TraesCS3B01G477200 chr7B 95.018 281 13 1 3947 4226 603668317 603668037 1.910000e-119 440.0
11 TraesCS3B01G477200 chr7B 94.346 283 11 2 3638 3918 603668590 603668311 4.130000e-116 429.0
12 TraesCS3B01G477200 chr7B 97.175 177 5 0 4276 4452 603668052 603667876 3.380000e-77 300.0
13 TraesCS3B01G477200 chr7B 91.960 199 15 1 4513 4711 603667769 603667572 1.580000e-70 278.0
14 TraesCS3B01G477200 chr7B 96.875 32 1 0 4297 4328 603667845 603667814 3.000000e-03 54.7
15 TraesCS3B01G477200 chr2A 81.230 309 37 13 1684 1981 171083314 171083612 4.500000e-56 230.0
16 TraesCS3B01G477200 chr2A 98.077 52 0 1 4224 4275 457904942 457904892 7.960000e-14 89.8
17 TraesCS3B01G477200 chr1D 86.473 207 19 5 155 355 481163567 481163364 9.730000e-53 219.0
18 TraesCS3B01G477200 chr1D 85.024 207 18 11 155 355 481311010 481310811 1.270000e-46 198.0
19 TraesCS3B01G477200 chr1D 94.915 59 1 2 4221 4278 46307086 46307143 2.210000e-14 91.6
20 TraesCS3B01G477200 chr7D 80.892 157 20 4 1813 1968 179519482 179519629 1.310000e-21 115.0
21 TraesCS3B01G477200 chr6B 98.148 54 0 1 4224 4277 126726035 126725983 6.150000e-15 93.5
22 TraesCS3B01G477200 chr6B 100.000 42 0 0 4224 4265 519142329 519142288 1.720000e-10 78.7
23 TraesCS3B01G477200 chr7A 100.000 47 0 0 4224 4270 383182028 383182074 2.860000e-13 87.9
24 TraesCS3B01G477200 chr7A 95.745 47 2 0 4224 4270 625079338 625079292 6.200000e-10 76.8
25 TraesCS3B01G477200 chr1B 100.000 47 0 0 4224 4270 95308848 95308802 2.860000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G477200 chr3B 725701874 725707641 5767 False 10652.000000 10652 100.000000 1 5768 1 chr3B.!!$F1 5767
1 TraesCS3B01G477200 chr3D 548242151 548247483 5332 False 2572.333333 5749 91.826333 401 5768 3 chr3D.!!$F2 5367
2 TraesCS3B01G477200 chr3A 685114758 685120129 5371 False 2733.333333 5520 92.225000 407 5768 3 chr3A.!!$F1 5361
3 TraesCS3B01G477200 chr7B 603667572 603669425 1853 True 357.783333 645 95.190833 3224 4711 6 chr7B.!!$R1 1487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.040425 GTGTAGGCAACAACCGCAAG 60.040 55.0 0.00 0.0 40.63 4.01 F
65 66 0.102300 GGCAACAACCGCAAGTCTTT 59.898 50.0 0.00 0.0 0.00 2.52 F
263 264 0.106149 GGTGGGCCGGTAATGAGTAG 59.894 60.0 1.90 0.0 0.00 2.57 F
1300 1377 0.250234 TCCTGACTGCGAAGATTGGG 59.750 55.0 0.00 0.0 0.00 4.12 F
2338 2420 0.251354 GGTGAGAATGCTCTGGCTGA 59.749 55.0 1.43 0.0 41.84 4.26 F
3194 3287 0.251564 CCTACAAACCACCATGCCCA 60.252 55.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 1689 0.601841 TTCCTCCCTGTCGTTTTCGC 60.602 55.000 0.00 0.0 43.73 4.70 R
1633 1712 2.008329 CATCCTCTTGCAGAGCTTCAC 58.992 52.381 7.44 0.0 40.98 3.18 R
2090 2169 2.105006 GAGCAAGCTCAACCTCATCA 57.895 50.000 16.69 0.0 42.31 3.07 R
3158 3251 1.742761 AGGAATCATGCAAGTGACCG 58.257 50.000 0.00 0.0 0.00 4.79 R
4236 4755 1.663135 GCAAAAAGCCTTTGCGTTTCA 59.337 42.857 15.68 0.0 46.30 2.69 R
4930 5515 1.309499 CGCGTCTCTCCTCAACCTCT 61.309 60.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.113986 ACCTTGGGTCAGTGCTGC 59.886 61.111 0.00 0.00 0.00 5.25
25 26 3.052082 CCTTGGGTCAGTGCTGCG 61.052 66.667 0.00 0.00 0.00 5.18
26 27 2.031012 CTTGGGTCAGTGCTGCGA 59.969 61.111 0.00 0.00 0.00 5.10
27 28 1.376424 CTTGGGTCAGTGCTGCGAT 60.376 57.895 0.00 0.00 0.00 4.58
28 29 0.108186 CTTGGGTCAGTGCTGCGATA 60.108 55.000 0.00 0.00 0.00 2.92
29 30 0.108186 TTGGGTCAGTGCTGCGATAG 60.108 55.000 0.00 0.00 0.00 2.08
30 31 1.227380 GGGTCAGTGCTGCGATAGG 60.227 63.158 0.00 0.00 0.00 2.57
31 32 1.884926 GGTCAGTGCTGCGATAGGC 60.885 63.158 0.00 0.00 43.96 3.93
42 43 2.821991 GCGATAGGCAGGACAATAGT 57.178 50.000 0.00 0.00 42.87 2.12
43 44 2.408050 GCGATAGGCAGGACAATAGTG 58.592 52.381 0.00 0.00 42.87 2.74
44 45 2.224066 GCGATAGGCAGGACAATAGTGT 60.224 50.000 0.00 0.00 42.87 3.55
45 46 3.005472 GCGATAGGCAGGACAATAGTGTA 59.995 47.826 0.00 0.00 42.87 2.90
46 47 4.799678 CGATAGGCAGGACAATAGTGTAG 58.200 47.826 0.00 0.00 38.41 2.74
47 48 4.321304 CGATAGGCAGGACAATAGTGTAGG 60.321 50.000 0.00 0.00 38.41 3.18
48 49 1.486726 AGGCAGGACAATAGTGTAGGC 59.513 52.381 0.00 2.09 38.41 3.93
49 50 1.209504 GGCAGGACAATAGTGTAGGCA 59.790 52.381 13.09 0.00 38.41 4.75
50 51 2.355716 GGCAGGACAATAGTGTAGGCAA 60.356 50.000 13.09 0.00 38.41 4.52
51 52 2.678336 GCAGGACAATAGTGTAGGCAAC 59.322 50.000 0.00 0.00 38.41 4.17
52 53 3.868369 GCAGGACAATAGTGTAGGCAACA 60.868 47.826 0.00 0.00 38.41 3.33
53 54 4.323417 CAGGACAATAGTGTAGGCAACAA 58.677 43.478 0.00 0.00 40.63 2.83
54 55 4.154195 CAGGACAATAGTGTAGGCAACAAC 59.846 45.833 0.00 0.00 40.63 3.32
55 56 3.439129 GGACAATAGTGTAGGCAACAACC 59.561 47.826 0.00 0.00 40.63 3.77
56 57 3.071479 ACAATAGTGTAGGCAACAACCG 58.929 45.455 0.00 0.00 40.63 4.44
57 58 1.734163 ATAGTGTAGGCAACAACCGC 58.266 50.000 0.00 0.00 40.63 5.68
58 59 0.393448 TAGTGTAGGCAACAACCGCA 59.607 50.000 0.00 0.00 40.63 5.69
59 60 0.464735 AGTGTAGGCAACAACCGCAA 60.465 50.000 0.00 0.00 40.63 4.85
60 61 0.040425 GTGTAGGCAACAACCGCAAG 60.040 55.000 0.00 0.00 40.63 4.01
61 62 0.464735 TGTAGGCAACAACCGCAAGT 60.465 50.000 0.00 0.00 34.29 3.16
62 63 0.237498 GTAGGCAACAACCGCAAGTC 59.763 55.000 0.00 0.00 41.41 3.01
63 64 0.107831 TAGGCAACAACCGCAAGTCT 59.892 50.000 0.00 0.00 41.41 3.24
64 65 0.751643 AGGCAACAACCGCAAGTCTT 60.752 50.000 0.00 0.00 41.41 3.01
65 66 0.102300 GGCAACAACCGCAAGTCTTT 59.898 50.000 0.00 0.00 0.00 2.52
66 67 1.199624 GCAACAACCGCAAGTCTTTG 58.800 50.000 0.00 0.00 37.36 2.77
75 76 3.746108 CAAGTCTTTGCGCGCTAAA 57.254 47.368 33.29 26.15 0.00 1.85
76 77 2.247311 CAAGTCTTTGCGCGCTAAAT 57.753 45.000 33.29 16.12 0.00 1.40
77 78 2.169179 CAAGTCTTTGCGCGCTAAATC 58.831 47.619 33.29 23.17 0.00 2.17
78 79 0.727398 AGTCTTTGCGCGCTAAATCC 59.273 50.000 33.29 19.23 0.00 3.01
79 80 0.727398 GTCTTTGCGCGCTAAATCCT 59.273 50.000 33.29 0.00 0.00 3.24
80 81 1.931172 GTCTTTGCGCGCTAAATCCTA 59.069 47.619 33.29 5.92 0.00 2.94
81 82 1.931172 TCTTTGCGCGCTAAATCCTAC 59.069 47.619 33.29 0.00 0.00 3.18
82 83 1.933853 CTTTGCGCGCTAAATCCTACT 59.066 47.619 33.29 0.00 0.00 2.57
83 84 1.567504 TTGCGCGCTAAATCCTACTC 58.432 50.000 33.29 0.00 0.00 2.59
84 85 0.594028 TGCGCGCTAAATCCTACTCG 60.594 55.000 33.29 0.00 0.00 4.18
85 86 0.317603 GCGCGCTAAATCCTACTCGA 60.318 55.000 26.67 0.00 0.00 4.04
86 87 1.396644 CGCGCTAAATCCTACTCGAC 58.603 55.000 5.56 0.00 0.00 4.20
87 88 1.268386 CGCGCTAAATCCTACTCGACA 60.268 52.381 5.56 0.00 0.00 4.35
88 89 2.604855 CGCGCTAAATCCTACTCGACAT 60.605 50.000 5.56 0.00 0.00 3.06
89 90 2.726760 GCGCTAAATCCTACTCGACATG 59.273 50.000 0.00 0.00 0.00 3.21
90 91 3.795826 GCGCTAAATCCTACTCGACATGT 60.796 47.826 0.00 0.00 0.00 3.21
91 92 3.731216 CGCTAAATCCTACTCGACATGTG 59.269 47.826 1.15 0.00 0.00 3.21
92 93 4.051922 GCTAAATCCTACTCGACATGTGG 58.948 47.826 1.15 0.87 0.00 4.17
93 94 4.202121 GCTAAATCCTACTCGACATGTGGA 60.202 45.833 1.15 6.76 0.00 4.02
94 95 5.509840 GCTAAATCCTACTCGACATGTGGAT 60.510 44.000 11.23 8.99 36.03 3.41
95 96 4.327982 AATCCTACTCGACATGTGGATG 57.672 45.455 11.23 8.12 34.89 3.51
96 97 3.012934 TCCTACTCGACATGTGGATGA 57.987 47.619 11.23 3.67 33.36 2.92
97 98 3.566351 TCCTACTCGACATGTGGATGAT 58.434 45.455 11.23 3.22 33.36 2.45
98 99 4.725490 TCCTACTCGACATGTGGATGATA 58.275 43.478 11.23 4.17 33.36 2.15
99 100 5.325239 TCCTACTCGACATGTGGATGATAT 58.675 41.667 11.23 0.00 33.36 1.63
100 101 5.183904 TCCTACTCGACATGTGGATGATATG 59.816 44.000 11.23 1.27 33.36 1.78
101 102 4.263018 ACTCGACATGTGGATGATATGG 57.737 45.455 11.23 0.56 33.36 2.74
102 103 3.897505 ACTCGACATGTGGATGATATGGA 59.102 43.478 11.23 0.00 33.36 3.41
103 104 4.344968 ACTCGACATGTGGATGATATGGAA 59.655 41.667 11.23 0.00 33.36 3.53
104 105 4.886579 TCGACATGTGGATGATATGGAAG 58.113 43.478 1.15 0.00 33.36 3.46
105 106 3.434641 CGACATGTGGATGATATGGAAGC 59.565 47.826 1.15 0.00 33.36 3.86
106 107 4.392047 GACATGTGGATGATATGGAAGCA 58.608 43.478 1.15 0.00 33.36 3.91
107 108 4.139786 ACATGTGGATGATATGGAAGCAC 58.860 43.478 0.00 0.00 33.36 4.40
108 109 4.141321 ACATGTGGATGATATGGAAGCACT 60.141 41.667 0.00 0.00 33.36 4.40
109 110 3.812262 TGTGGATGATATGGAAGCACTG 58.188 45.455 0.00 0.00 0.00 3.66
110 111 3.455543 TGTGGATGATATGGAAGCACTGA 59.544 43.478 0.00 0.00 0.00 3.41
111 112 4.080413 TGTGGATGATATGGAAGCACTGAA 60.080 41.667 0.00 0.00 0.00 3.02
112 113 4.883585 GTGGATGATATGGAAGCACTGAAA 59.116 41.667 0.00 0.00 0.00 2.69
113 114 4.883585 TGGATGATATGGAAGCACTGAAAC 59.116 41.667 0.00 0.00 0.00 2.78
114 115 4.024556 GGATGATATGGAAGCACTGAAACG 60.025 45.833 0.00 0.00 0.00 3.60
115 116 2.677836 TGATATGGAAGCACTGAAACGC 59.322 45.455 0.00 0.00 0.00 4.84
116 117 1.448985 TATGGAAGCACTGAAACGCC 58.551 50.000 0.00 0.00 0.00 5.68
117 118 0.537143 ATGGAAGCACTGAAACGCCA 60.537 50.000 0.00 0.00 0.00 5.69
118 119 0.537143 TGGAAGCACTGAAACGCCAT 60.537 50.000 0.00 0.00 0.00 4.40
119 120 0.598065 GGAAGCACTGAAACGCCATT 59.402 50.000 0.00 0.00 0.00 3.16
120 121 1.000274 GGAAGCACTGAAACGCCATTT 60.000 47.619 0.00 0.00 0.00 2.32
121 122 2.545742 GGAAGCACTGAAACGCCATTTT 60.546 45.455 0.00 0.00 0.00 1.82
122 123 2.138596 AGCACTGAAACGCCATTTTG 57.861 45.000 0.00 0.00 0.00 2.44
123 124 1.408702 AGCACTGAAACGCCATTTTGT 59.591 42.857 0.00 0.00 0.00 2.83
124 125 2.159114 AGCACTGAAACGCCATTTTGTT 60.159 40.909 0.00 0.00 0.00 2.83
125 126 2.218530 GCACTGAAACGCCATTTTGTTC 59.781 45.455 0.00 0.00 0.00 3.18
126 127 2.467305 CACTGAAACGCCATTTTGTTCG 59.533 45.455 0.00 0.00 0.00 3.95
127 128 2.356382 ACTGAAACGCCATTTTGTTCGA 59.644 40.909 0.00 0.00 0.00 3.71
128 129 3.004315 ACTGAAACGCCATTTTGTTCGAT 59.996 39.130 0.00 0.00 0.00 3.59
129 130 3.304257 TGAAACGCCATTTTGTTCGATG 58.696 40.909 0.00 0.00 0.00 3.84
130 131 2.346099 AACGCCATTTTGTTCGATGG 57.654 45.000 0.00 0.00 44.52 3.51
141 142 3.521605 TCGATGGCGAATCTCCGT 58.478 55.556 0.00 0.00 44.78 4.69
142 143 1.359117 TCGATGGCGAATCTCCGTC 59.641 57.895 1.49 1.49 44.78 4.79
145 146 4.590487 TGGCGAATCTCCGTCAAC 57.410 55.556 0.00 0.00 41.50 3.18
146 147 1.668867 TGGCGAATCTCCGTCAACA 59.331 52.632 0.00 0.00 41.50 3.33
147 148 0.669318 TGGCGAATCTCCGTCAACAC 60.669 55.000 0.00 0.00 41.50 3.32
148 149 1.359459 GGCGAATCTCCGTCAACACC 61.359 60.000 0.00 0.00 33.83 4.16
149 150 1.359459 GCGAATCTCCGTCAACACCC 61.359 60.000 0.00 0.00 0.00 4.61
150 151 0.739813 CGAATCTCCGTCAACACCCC 60.740 60.000 0.00 0.00 0.00 4.95
151 152 0.739813 GAATCTCCGTCAACACCCCG 60.740 60.000 0.00 0.00 0.00 5.73
152 153 2.180159 AATCTCCGTCAACACCCCGG 62.180 60.000 0.00 0.00 43.03 5.73
154 155 2.605295 TCCGTCAACACCCCGGAT 60.605 61.111 0.73 0.00 45.20 4.18
155 156 2.125269 CCGTCAACACCCCGGATC 60.125 66.667 0.73 0.00 44.41 3.36
156 157 2.660206 CGTCAACACCCCGGATCA 59.340 61.111 0.73 0.00 0.00 2.92
157 158 1.220749 CGTCAACACCCCGGATCAT 59.779 57.895 0.73 0.00 0.00 2.45
158 159 0.392461 CGTCAACACCCCGGATCATT 60.392 55.000 0.73 0.00 0.00 2.57
159 160 1.379527 GTCAACACCCCGGATCATTC 58.620 55.000 0.73 0.00 0.00 2.67
160 161 0.988063 TCAACACCCCGGATCATTCA 59.012 50.000 0.73 0.00 0.00 2.57
161 162 1.352687 TCAACACCCCGGATCATTCAA 59.647 47.619 0.73 0.00 0.00 2.69
162 163 1.472480 CAACACCCCGGATCATTCAAC 59.528 52.381 0.73 0.00 0.00 3.18
163 164 0.695924 ACACCCCGGATCATTCAACA 59.304 50.000 0.73 0.00 0.00 3.33
164 165 1.284785 ACACCCCGGATCATTCAACAT 59.715 47.619 0.73 0.00 0.00 2.71
165 166 2.507886 ACACCCCGGATCATTCAACATA 59.492 45.455 0.73 0.00 0.00 2.29
166 167 3.138283 ACACCCCGGATCATTCAACATAT 59.862 43.478 0.73 0.00 0.00 1.78
167 168 4.349636 ACACCCCGGATCATTCAACATATA 59.650 41.667 0.73 0.00 0.00 0.86
168 169 5.014123 ACACCCCGGATCATTCAACATATAT 59.986 40.000 0.73 0.00 0.00 0.86
169 170 5.355071 CACCCCGGATCATTCAACATATATG 59.645 44.000 11.29 11.29 0.00 1.78
170 171 4.883585 CCCCGGATCATTCAACATATATGG 59.116 45.833 16.96 0.39 0.00 2.74
171 172 4.883585 CCCGGATCATTCAACATATATGGG 59.116 45.833 16.96 8.71 0.00 4.00
172 173 5.339118 CCCGGATCATTCAACATATATGGGA 60.339 44.000 16.96 10.81 32.03 4.37
173 174 5.586243 CCGGATCATTCAACATATATGGGAC 59.414 44.000 16.96 2.66 0.00 4.46
174 175 5.291858 CGGATCATTCAACATATATGGGACG 59.708 44.000 16.96 8.55 0.00 4.79
175 176 6.406370 GGATCATTCAACATATATGGGACGA 58.594 40.000 16.96 12.04 0.00 4.20
176 177 6.536582 GGATCATTCAACATATATGGGACGAG 59.463 42.308 16.96 6.71 0.00 4.18
177 178 5.793817 TCATTCAACATATATGGGACGAGG 58.206 41.667 16.96 3.02 0.00 4.63
178 179 4.617253 TTCAACATATATGGGACGAGGG 57.383 45.455 16.96 0.00 0.00 4.30
179 180 2.903784 TCAACATATATGGGACGAGGGG 59.096 50.000 16.96 0.00 0.00 4.79
180 181 2.903784 CAACATATATGGGACGAGGGGA 59.096 50.000 16.96 0.00 0.00 4.81
181 182 2.821437 ACATATATGGGACGAGGGGAG 58.179 52.381 16.96 0.00 0.00 4.30
182 183 2.111384 CATATATGGGACGAGGGGAGG 58.889 57.143 4.68 0.00 0.00 4.30
183 184 0.252103 TATATGGGACGAGGGGAGGC 60.252 60.000 0.00 0.00 0.00 4.70
184 185 2.037304 ATATGGGACGAGGGGAGGCT 62.037 60.000 0.00 0.00 0.00 4.58
185 186 2.658321 TATGGGACGAGGGGAGGCTC 62.658 65.000 5.78 5.78 0.00 4.70
186 187 4.467107 GGGACGAGGGGAGGCTCT 62.467 72.222 15.23 0.00 0.00 4.09
187 188 3.151022 GGACGAGGGGAGGCTCTG 61.151 72.222 15.23 2.38 0.00 3.35
188 189 3.151022 GACGAGGGGAGGCTCTGG 61.151 72.222 15.23 0.00 0.00 3.86
189 190 4.787280 ACGAGGGGAGGCTCTGGG 62.787 72.222 15.23 2.54 0.00 4.45
192 193 4.682714 AGGGGAGGCTCTGGGCAA 62.683 66.667 15.23 0.00 44.01 4.52
193 194 3.661648 GGGGAGGCTCTGGGCAAA 61.662 66.667 15.23 0.00 44.01 3.68
194 195 2.044551 GGGAGGCTCTGGGCAAAG 60.045 66.667 15.23 0.00 44.01 2.77
195 196 2.044551 GGAGGCTCTGGGCAAAGG 60.045 66.667 15.23 0.00 44.01 3.11
196 197 2.753446 GAGGCTCTGGGCAAAGGC 60.753 66.667 7.40 0.00 44.01 4.35
208 209 2.818130 GCAAAGGCCAATCTGTTCAA 57.182 45.000 5.01 0.00 0.00 2.69
209 210 2.680577 GCAAAGGCCAATCTGTTCAAG 58.319 47.619 5.01 0.00 0.00 3.02
210 211 2.611224 GCAAAGGCCAATCTGTTCAAGG 60.611 50.000 5.01 0.00 0.00 3.61
211 212 1.928868 AAGGCCAATCTGTTCAAGGG 58.071 50.000 5.01 0.00 0.00 3.95
212 213 0.779997 AGGCCAATCTGTTCAAGGGT 59.220 50.000 5.01 0.00 0.00 4.34
213 214 0.890683 GGCCAATCTGTTCAAGGGTG 59.109 55.000 0.00 0.00 0.00 4.61
214 215 1.547675 GGCCAATCTGTTCAAGGGTGA 60.548 52.381 0.00 0.00 0.00 4.02
215 216 2.450476 GCCAATCTGTTCAAGGGTGAT 58.550 47.619 0.00 0.00 32.48 3.06
216 217 2.165030 GCCAATCTGTTCAAGGGTGATG 59.835 50.000 0.00 0.00 32.48 3.07
217 218 3.689347 CCAATCTGTTCAAGGGTGATGA 58.311 45.455 0.00 0.00 32.48 2.92
218 219 4.275810 CCAATCTGTTCAAGGGTGATGAT 58.724 43.478 0.00 0.00 32.48 2.45
219 220 5.439721 CCAATCTGTTCAAGGGTGATGATA 58.560 41.667 0.00 0.00 32.48 2.15
220 221 5.530171 CCAATCTGTTCAAGGGTGATGATAG 59.470 44.000 0.00 0.00 32.48 2.08
221 222 5.965033 ATCTGTTCAAGGGTGATGATAGT 57.035 39.130 0.00 0.00 32.48 2.12
222 223 5.089970 TCTGTTCAAGGGTGATGATAGTG 57.910 43.478 0.00 0.00 32.48 2.74
223 224 4.080919 TCTGTTCAAGGGTGATGATAGTGG 60.081 45.833 0.00 0.00 32.48 4.00
224 225 3.843619 TGTTCAAGGGTGATGATAGTGGA 59.156 43.478 0.00 0.00 32.48 4.02
225 226 4.474651 TGTTCAAGGGTGATGATAGTGGAT 59.525 41.667 0.00 0.00 32.48 3.41
226 227 5.044919 TGTTCAAGGGTGATGATAGTGGATT 60.045 40.000 0.00 0.00 32.48 3.01
227 228 5.296151 TCAAGGGTGATGATAGTGGATTC 57.704 43.478 0.00 0.00 0.00 2.52
228 229 4.060900 CAAGGGTGATGATAGTGGATTCG 58.939 47.826 0.00 0.00 0.00 3.34
229 230 2.634940 AGGGTGATGATAGTGGATTCGG 59.365 50.000 0.00 0.00 0.00 4.30
230 231 2.368875 GGGTGATGATAGTGGATTCGGT 59.631 50.000 0.00 0.00 0.00 4.69
231 232 3.393800 GGTGATGATAGTGGATTCGGTG 58.606 50.000 0.00 0.00 0.00 4.94
232 233 3.181465 GGTGATGATAGTGGATTCGGTGT 60.181 47.826 0.00 0.00 0.00 4.16
233 234 3.804325 GTGATGATAGTGGATTCGGTGTG 59.196 47.826 0.00 0.00 0.00 3.82
234 235 2.979814 TGATAGTGGATTCGGTGTGG 57.020 50.000 0.00 0.00 0.00 4.17
235 236 2.462723 TGATAGTGGATTCGGTGTGGA 58.537 47.619 0.00 0.00 0.00 4.02
236 237 2.430694 TGATAGTGGATTCGGTGTGGAG 59.569 50.000 0.00 0.00 0.00 3.86
237 238 1.191535 TAGTGGATTCGGTGTGGAGG 58.808 55.000 0.00 0.00 0.00 4.30
238 239 0.544357 AGTGGATTCGGTGTGGAGGA 60.544 55.000 0.00 0.00 0.00 3.71
239 240 0.108138 GTGGATTCGGTGTGGAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
240 241 0.252057 TGGATTCGGTGTGGAGGAGA 60.252 55.000 0.00 0.00 0.00 3.71
241 242 0.175989 GGATTCGGTGTGGAGGAGAC 59.824 60.000 0.00 0.00 0.00 3.36
242 243 0.179134 GATTCGGTGTGGAGGAGACG 60.179 60.000 0.00 0.00 0.00 4.18
243 244 2.227089 ATTCGGTGTGGAGGAGACGC 62.227 60.000 0.00 0.00 0.00 5.19
244 245 4.778415 CGGTGTGGAGGAGACGCG 62.778 72.222 3.53 3.53 0.00 6.01
245 246 4.436998 GGTGTGGAGGAGACGCGG 62.437 72.222 12.47 0.00 0.00 6.46
246 247 3.681835 GTGTGGAGGAGACGCGGT 61.682 66.667 12.47 0.00 0.00 5.68
247 248 3.680786 TGTGGAGGAGACGCGGTG 61.681 66.667 12.47 0.00 0.00 4.94
248 249 4.436998 GTGGAGGAGACGCGGTGG 62.437 72.222 12.47 0.00 0.00 4.61
261 262 2.995547 GGTGGGCCGGTAATGAGT 59.004 61.111 1.90 0.00 0.00 3.41
262 263 2.214235 GGTGGGCCGGTAATGAGTA 58.786 57.895 1.90 0.00 0.00 2.59
263 264 0.106149 GGTGGGCCGGTAATGAGTAG 59.894 60.000 1.90 0.00 0.00 2.57
264 265 0.828677 GTGGGCCGGTAATGAGTAGT 59.171 55.000 1.90 0.00 0.00 2.73
265 266 1.117150 TGGGCCGGTAATGAGTAGTC 58.883 55.000 1.90 0.00 0.00 2.59
266 267 0.391966 GGGCCGGTAATGAGTAGTCC 59.608 60.000 1.90 0.00 0.00 3.85
267 268 1.411041 GGCCGGTAATGAGTAGTCCT 58.589 55.000 1.90 0.00 0.00 3.85
268 269 2.590821 GGCCGGTAATGAGTAGTCCTA 58.409 52.381 1.90 0.00 0.00 2.94
269 270 3.163467 GGCCGGTAATGAGTAGTCCTAT 58.837 50.000 1.90 0.00 0.00 2.57
270 271 4.338879 GGCCGGTAATGAGTAGTCCTATA 58.661 47.826 1.90 0.00 0.00 1.31
271 272 4.398673 GGCCGGTAATGAGTAGTCCTATAG 59.601 50.000 1.90 0.00 0.00 1.31
272 273 5.251764 GCCGGTAATGAGTAGTCCTATAGA 58.748 45.833 1.90 0.00 0.00 1.98
273 274 5.123661 GCCGGTAATGAGTAGTCCTATAGAC 59.876 48.000 1.90 0.00 46.71 2.59
286 287 6.016213 GTCCTATAGACTGTTAGCTTAGCC 57.984 45.833 0.00 0.00 42.69 3.93
287 288 5.771165 GTCCTATAGACTGTTAGCTTAGCCT 59.229 44.000 0.00 0.00 42.69 4.58
288 289 6.941436 GTCCTATAGACTGTTAGCTTAGCCTA 59.059 42.308 0.00 0.00 42.69 3.93
289 290 7.120138 GTCCTATAGACTGTTAGCTTAGCCTAG 59.880 44.444 0.00 0.00 42.69 3.02
290 291 6.376018 CCTATAGACTGTTAGCTTAGCCTAGG 59.624 46.154 3.67 3.67 0.00 3.02
291 292 3.983821 AGACTGTTAGCTTAGCCTAGGT 58.016 45.455 11.31 0.00 0.00 3.08
292 293 5.126699 AGACTGTTAGCTTAGCCTAGGTA 57.873 43.478 11.31 0.00 0.00 3.08
293 294 5.134661 AGACTGTTAGCTTAGCCTAGGTAG 58.865 45.833 11.31 6.96 30.54 3.18
294 295 4.869451 ACTGTTAGCTTAGCCTAGGTAGT 58.131 43.478 11.31 0.00 30.54 2.73
295 296 4.645588 ACTGTTAGCTTAGCCTAGGTAGTG 59.354 45.833 11.31 0.20 30.54 2.74
296 297 4.607239 TGTTAGCTTAGCCTAGGTAGTGT 58.393 43.478 11.31 1.27 30.54 3.55
297 298 4.643784 TGTTAGCTTAGCCTAGGTAGTGTC 59.356 45.833 11.31 0.00 30.54 3.67
298 299 2.299521 AGCTTAGCCTAGGTAGTGTCG 58.700 52.381 11.31 0.00 0.00 4.35
299 300 1.337387 GCTTAGCCTAGGTAGTGTCGG 59.663 57.143 11.31 0.00 0.00 4.79
300 301 2.652590 CTTAGCCTAGGTAGTGTCGGT 58.347 52.381 11.31 0.00 0.00 4.69
301 302 2.338577 TAGCCTAGGTAGTGTCGGTC 57.661 55.000 11.31 0.00 0.00 4.79
302 303 0.747283 AGCCTAGGTAGTGTCGGTCG 60.747 60.000 11.31 0.00 0.00 4.79
303 304 1.028868 GCCTAGGTAGTGTCGGTCGT 61.029 60.000 11.31 0.00 0.00 4.34
304 305 0.731417 CCTAGGTAGTGTCGGTCGTG 59.269 60.000 0.00 0.00 0.00 4.35
305 306 1.446907 CTAGGTAGTGTCGGTCGTGT 58.553 55.000 0.00 0.00 0.00 4.49
306 307 1.396301 CTAGGTAGTGTCGGTCGTGTC 59.604 57.143 0.00 0.00 0.00 3.67
307 308 1.211190 GGTAGTGTCGGTCGTGTCC 59.789 63.158 0.00 0.00 0.00 4.02
314 315 2.179767 CGGTCGTGTCCGCATGTA 59.820 61.111 0.00 0.00 43.96 2.29
315 316 1.444724 CGGTCGTGTCCGCATGTAA 60.445 57.895 0.00 0.00 43.96 2.41
316 317 1.009903 CGGTCGTGTCCGCATGTAAA 61.010 55.000 0.00 0.00 43.96 2.01
317 318 1.365699 GGTCGTGTCCGCATGTAAAT 58.634 50.000 0.00 0.00 33.51 1.40
318 319 2.542597 GGTCGTGTCCGCATGTAAATA 58.457 47.619 0.00 0.00 33.51 1.40
319 320 2.931325 GGTCGTGTCCGCATGTAAATAA 59.069 45.455 0.00 0.00 33.51 1.40
320 321 3.242188 GGTCGTGTCCGCATGTAAATAAC 60.242 47.826 0.00 0.00 33.51 1.89
321 322 3.615496 GTCGTGTCCGCATGTAAATAACT 59.385 43.478 0.00 0.00 33.51 2.24
322 323 4.092383 GTCGTGTCCGCATGTAAATAACTT 59.908 41.667 0.00 0.00 33.51 2.66
323 324 4.691685 TCGTGTCCGCATGTAAATAACTTT 59.308 37.500 0.00 0.00 33.51 2.66
324 325 4.786068 CGTGTCCGCATGTAAATAACTTTG 59.214 41.667 0.00 0.00 0.00 2.77
325 326 5.615984 CGTGTCCGCATGTAAATAACTTTGT 60.616 40.000 0.00 0.00 0.00 2.83
326 327 6.401260 CGTGTCCGCATGTAAATAACTTTGTA 60.401 38.462 0.00 0.00 0.00 2.41
327 328 7.469260 GTGTCCGCATGTAAATAACTTTGTAT 58.531 34.615 0.00 0.00 0.00 2.29
328 329 7.966204 GTGTCCGCATGTAAATAACTTTGTATT 59.034 33.333 0.00 0.00 0.00 1.89
329 330 7.965655 TGTCCGCATGTAAATAACTTTGTATTG 59.034 33.333 0.00 0.00 0.00 1.90
330 331 7.431084 GTCCGCATGTAAATAACTTTGTATTGG 59.569 37.037 0.00 0.00 0.00 3.16
331 332 7.121463 TCCGCATGTAAATAACTTTGTATTGGT 59.879 33.333 0.00 0.00 0.00 3.67
332 333 7.219917 CCGCATGTAAATAACTTTGTATTGGTG 59.780 37.037 0.00 0.00 0.00 4.17
333 334 7.219917 CGCATGTAAATAACTTTGTATTGGTGG 59.780 37.037 0.00 0.00 0.00 4.61
334 335 8.247562 GCATGTAAATAACTTTGTATTGGTGGA 58.752 33.333 0.00 0.00 0.00 4.02
340 341 5.482163 AACTTTGTATTGGTGGATTTGGG 57.518 39.130 0.00 0.00 0.00 4.12
341 342 3.837731 ACTTTGTATTGGTGGATTTGGGG 59.162 43.478 0.00 0.00 0.00 4.96
342 343 3.551635 TTGTATTGGTGGATTTGGGGT 57.448 42.857 0.00 0.00 0.00 4.95
343 344 3.551635 TGTATTGGTGGATTTGGGGTT 57.448 42.857 0.00 0.00 0.00 4.11
344 345 3.436243 TGTATTGGTGGATTTGGGGTTC 58.564 45.455 0.00 0.00 0.00 3.62
345 346 3.076785 TGTATTGGTGGATTTGGGGTTCT 59.923 43.478 0.00 0.00 0.00 3.01
346 347 2.302587 TTGGTGGATTTGGGGTTCTC 57.697 50.000 0.00 0.00 0.00 2.87
347 348 0.407918 TGGTGGATTTGGGGTTCTCC 59.592 55.000 0.00 0.00 0.00 3.71
368 369 3.902218 CCCCCTCTTCTTTAATGCATGA 58.098 45.455 0.00 0.00 0.00 3.07
369 370 4.477249 CCCCCTCTTCTTTAATGCATGAT 58.523 43.478 0.00 0.00 0.00 2.45
370 371 4.897670 CCCCCTCTTCTTTAATGCATGATT 59.102 41.667 0.00 0.00 0.00 2.57
371 372 5.010415 CCCCCTCTTCTTTAATGCATGATTC 59.990 44.000 0.00 0.00 0.00 2.52
372 373 5.595542 CCCCTCTTCTTTAATGCATGATTCA 59.404 40.000 0.00 0.00 0.00 2.57
373 374 6.460676 CCCCTCTTCTTTAATGCATGATTCAC 60.461 42.308 0.00 0.00 0.00 3.18
374 375 6.095860 CCCTCTTCTTTAATGCATGATTCACA 59.904 38.462 0.00 0.00 0.00 3.58
375 376 6.971184 CCTCTTCTTTAATGCATGATTCACAC 59.029 38.462 0.00 0.00 0.00 3.82
376 377 7.148120 CCTCTTCTTTAATGCATGATTCACACT 60.148 37.037 0.00 0.00 0.00 3.55
377 378 7.755591 TCTTCTTTAATGCATGATTCACACTC 58.244 34.615 0.00 0.00 0.00 3.51
378 379 7.609146 TCTTCTTTAATGCATGATTCACACTCT 59.391 33.333 0.00 0.00 0.00 3.24
379 380 7.692460 TCTTTAATGCATGATTCACACTCTT 57.308 32.000 0.00 0.00 0.00 2.85
380 381 8.791327 TCTTTAATGCATGATTCACACTCTTA 57.209 30.769 0.00 0.00 0.00 2.10
381 382 9.399797 TCTTTAATGCATGATTCACACTCTTAT 57.600 29.630 0.00 0.00 0.00 1.73
382 383 9.447040 CTTTAATGCATGATTCACACTCTTATG 57.553 33.333 0.00 0.00 0.00 1.90
383 384 8.510243 TTAATGCATGATTCACACTCTTATGT 57.490 30.769 0.00 0.00 0.00 2.29
419 420 7.575499 AAAAGAAAGAGAAAGGGATAGAGGA 57.425 36.000 0.00 0.00 0.00 3.71
420 421 7.575499 AAAGAAAGAGAAAGGGATAGAGGAA 57.425 36.000 0.00 0.00 0.00 3.36
423 424 6.611236 AGAAAGAGAAAGGGATAGAGGAAGAG 59.389 42.308 0.00 0.00 0.00 2.85
430 431 2.719705 GGGATAGAGGAAGAGGAGGAGA 59.280 54.545 0.00 0.00 0.00 3.71
441 442 2.244769 AGAGGAGGAGAAGGAGAGAAGG 59.755 54.545 0.00 0.00 0.00 3.46
446 447 4.354662 GAGGAGAAGGAGAGAAGGGTTAA 58.645 47.826 0.00 0.00 0.00 2.01
459 460 5.548573 AGAAGGGTTAATGAGAAGGGGATA 58.451 41.667 0.00 0.00 0.00 2.59
460 461 5.976870 AGAAGGGTTAATGAGAAGGGGATAA 59.023 40.000 0.00 0.00 0.00 1.75
461 462 6.450352 AGAAGGGTTAATGAGAAGGGGATAAA 59.550 38.462 0.00 0.00 0.00 1.40
473 474 5.738606 AGAAGGGGATAAAAAGGAAGAGGAT 59.261 40.000 0.00 0.00 0.00 3.24
529 530 0.601558 TCGGTGTCTGTCTTACCAGC 59.398 55.000 0.00 0.00 34.10 4.85
535 536 2.560981 TGTCTGTCTTACCAGCGAATCA 59.439 45.455 0.00 0.00 32.32 2.57
544 545 3.794646 CAGCGAATCAACTCGATGC 57.205 52.632 0.00 0.00 46.67 3.91
556 561 8.593134 AATCAACTCGATGCCATCACTATGGT 62.593 42.308 5.40 0.00 43.55 3.55
582 587 4.506288 CAGATATCATTGTCAACGCGGTAA 59.494 41.667 12.47 0.00 0.00 2.85
657 662 2.761213 GGGTCGGGGACACGGTAT 60.761 66.667 0.00 0.00 33.68 2.73
662 667 1.065273 CGGGGACACGGTATCGAAG 59.935 63.158 0.34 0.00 40.11 3.79
698 703 3.054166 GGGTTGCGTTCACATTTTAACC 58.946 45.455 0.00 0.00 36.30 2.85
700 705 3.243602 GGTTGCGTTCACATTTTAACCCT 60.244 43.478 0.00 0.00 32.11 4.34
701 706 4.023021 GGTTGCGTTCACATTTTAACCCTA 60.023 41.667 0.00 0.00 32.11 3.53
702 707 4.752661 TGCGTTCACATTTTAACCCTAC 57.247 40.909 0.00 0.00 0.00 3.18
704 709 3.739494 CGTTCACATTTTAACCCTACGC 58.261 45.455 0.00 0.00 0.00 4.42
705 710 3.425227 CGTTCACATTTTAACCCTACGCC 60.425 47.826 0.00 0.00 0.00 5.68
706 711 3.706600 TCACATTTTAACCCTACGCCT 57.293 42.857 0.00 0.00 0.00 5.52
714 780 2.834638 AACCCTACGCCTTCCTAGTA 57.165 50.000 0.00 0.00 0.00 1.82
899 972 3.702048 CCTCGTCTTCCCCGCCAA 61.702 66.667 0.00 0.00 0.00 4.52
907 980 3.962530 TTCCCCGCCAATCCCCTCT 62.963 63.158 0.00 0.00 0.00 3.69
908 981 3.878667 CCCCGCCAATCCCCTCTC 61.879 72.222 0.00 0.00 0.00 3.20
910 983 3.878667 CCGCCAATCCCCTCTCCC 61.879 72.222 0.00 0.00 0.00 4.30
911 984 2.770048 CGCCAATCCCCTCTCCCT 60.770 66.667 0.00 0.00 0.00 4.20
1289 1366 9.706691 TTTAGTACTTGAACTTATTCCTGACTG 57.293 33.333 0.00 0.00 33.49 3.51
1290 1367 6.166982 AGTACTTGAACTTATTCCTGACTGC 58.833 40.000 0.00 0.00 33.49 4.40
1300 1377 0.250234 TCCTGACTGCGAAGATTGGG 59.750 55.000 0.00 0.00 0.00 4.12
1341 1418 3.366883 GGAAAGCACGCATATTGGTTTGA 60.367 43.478 7.58 0.00 43.03 2.69
1342 1419 4.423732 GAAAGCACGCATATTGGTTTGAT 58.576 39.130 7.58 0.00 43.03 2.57
1343 1420 4.454728 AAGCACGCATATTGGTTTGATT 57.545 36.364 0.00 0.00 30.54 2.57
1344 1421 3.772932 AGCACGCATATTGGTTTGATTG 58.227 40.909 0.00 0.00 0.00 2.67
1356 1433 3.444742 TGGTTTGATTGACTGATCCATGC 59.555 43.478 0.00 0.00 0.00 4.06
1499 1578 3.134458 GCTATCAAGTAGTCCACCATGC 58.866 50.000 0.00 0.00 32.72 4.06
1529 1608 7.441458 GTGTTCACCTGTCTTAGTTTCTACATT 59.559 37.037 0.00 0.00 0.00 2.71
1548 1627 4.876107 ACATTCCGAAGCAAAGATATCGTT 59.124 37.500 0.00 0.00 33.65 3.85
1549 1628 5.354234 ACATTCCGAAGCAAAGATATCGTTT 59.646 36.000 0.72 0.00 33.65 3.60
1610 1689 1.159285 TGCCTGTTTCATGAAGAGCG 58.841 50.000 8.41 4.92 0.00 5.03
1633 1712 2.094762 AAACGACAGGGAGGAATTCG 57.905 50.000 0.00 0.00 35.80 3.34
1671 1750 1.195115 TGGAGTACACCATCAGAGCC 58.805 55.000 8.07 0.00 34.77 4.70
1715 1794 6.505048 TGATATGATGGTGAGAACTTGGAT 57.495 37.500 0.00 0.00 0.00 3.41
1729 1808 4.313020 ACTTGGATGCCTTTCTGAAGAT 57.687 40.909 0.00 0.00 34.71 2.40
1732 1811 6.248433 ACTTGGATGCCTTTCTGAAGATTTA 58.752 36.000 0.00 0.00 34.71 1.40
1773 1852 3.057033 GCATTTGCTGGTTCAGACTGATT 60.057 43.478 5.87 0.00 38.21 2.57
1816 1895 2.086869 GCTCATTTCTGGCAGTGCTTA 58.913 47.619 16.11 3.70 0.00 3.09
1971 2050 5.394224 CGAGCAGAACTTCCTGACCTATTTA 60.394 44.000 0.00 0.00 36.29 1.40
1976 2055 7.554476 GCAGAACTTCCTGACCTATTTATTTCT 59.446 37.037 0.00 0.00 36.29 2.52
2003 2082 2.175715 AGGACTTGTTTGGGAGAAAGCT 59.824 45.455 0.00 0.00 0.00 3.74
2055 2134 1.971167 GTGCCCAATTCGGTGCAGA 60.971 57.895 0.00 0.00 40.36 4.26
2202 2281 4.706962 AGAATGCACCTCCTTATCCAAAAC 59.293 41.667 0.00 0.00 0.00 2.43
2207 2286 5.222048 TGCACCTCCTTATCCAAAACTACTT 60.222 40.000 0.00 0.00 0.00 2.24
2337 2419 0.252479 AGGTGAGAATGCTCTGGCTG 59.748 55.000 1.43 0.00 41.84 4.85
2338 2420 0.251354 GGTGAGAATGCTCTGGCTGA 59.749 55.000 1.43 0.00 41.84 4.26
2339 2421 1.654317 GTGAGAATGCTCTGGCTGAG 58.346 55.000 16.23 16.23 45.33 3.35
2379 2461 5.722263 TGCACCCTCATTTTGAAACATATG 58.278 37.500 0.00 0.00 0.00 1.78
2386 2468 6.028146 TCATTTTGAAACATATGCAGCTGT 57.972 33.333 16.64 0.00 0.00 4.40
2533 2615 2.380410 CGTGGCTCGGTTTTCCTCG 61.380 63.158 0.13 0.00 37.95 4.63
2606 2699 8.350722 TCTTCTATGTTCCAGTACGTCATATTC 58.649 37.037 0.00 0.00 0.00 1.75
2762 2855 6.115446 TCGAAGTTTATCTTGCTCATTCCAT 58.885 36.000 0.00 0.00 36.40 3.41
2768 2861 8.897752 AGTTTATCTTGCTCATTCCATAAGTTC 58.102 33.333 0.00 0.00 0.00 3.01
2769 2862 8.677300 GTTTATCTTGCTCATTCCATAAGTTCA 58.323 33.333 0.00 0.00 0.00 3.18
2944 3037 5.133221 ACTTGAGGTTTGTGCTGTTCTTAT 58.867 37.500 0.00 0.00 0.00 1.73
3158 3251 3.211045 TCTGGTGCCTTAGTTGTGAAAC 58.789 45.455 0.00 0.00 37.35 2.78
3194 3287 0.251564 CCTACAAACCACCATGCCCA 60.252 55.000 0.00 0.00 0.00 5.36
3195 3288 1.176527 CTACAAACCACCATGCCCAG 58.823 55.000 0.00 0.00 0.00 4.45
3201 3294 0.620556 ACCACCATGCCCAGACTAAG 59.379 55.000 0.00 0.00 0.00 2.18
3444 3539 8.523915 TGCTGAAGATAAATCATGGTATTTGT 57.476 30.769 3.29 0.00 31.63 2.83
3696 4213 5.543790 TCTGGCTGGATATTGTGCTAAGATA 59.456 40.000 0.00 0.00 0.00 1.98
3731 4248 5.611374 AGTCCCACTCGATGTATTATTTGG 58.389 41.667 0.00 0.00 0.00 3.28
3735 4252 5.056480 CCACTCGATGTATTATTTGGCAGA 58.944 41.667 0.00 0.00 0.00 4.26
3746 4263 7.720957 TGTATTATTTGGCAGAGTATTCATGCT 59.279 33.333 8.68 0.00 39.88 3.79
3787 4304 4.055710 TGTGTATGACCTAACCAGGAGA 57.944 45.455 0.00 0.00 45.91 3.71
3790 4307 2.950990 ATGACCTAACCAGGAGACCT 57.049 50.000 0.00 0.00 45.91 3.85
3791 4308 2.715763 TGACCTAACCAGGAGACCTT 57.284 50.000 0.00 0.00 45.91 3.50
3904 4423 3.935203 AGGACACTCATGTATTGCTTTCG 59.065 43.478 0.00 0.00 39.95 3.46
3936 4455 3.942130 ATTTACCTTTGCTGCAGGTTC 57.058 42.857 17.34 0.00 42.45 3.62
4096 4615 4.851639 AGAGGCTTGTGTTCATAGGAAT 57.148 40.909 0.00 0.00 35.05 3.01
4103 4622 6.928492 GGCTTGTGTTCATAGGAATTTTCAAA 59.072 34.615 0.00 0.00 35.05 2.69
4214 4733 7.471041 AGGCTACTATTGAGGTATGTCAGATA 58.529 38.462 0.00 0.00 0.00 1.98
4215 4734 8.119246 AGGCTACTATTGAGGTATGTCAGATAT 58.881 37.037 0.00 0.00 0.00 1.63
4216 4735 8.754080 GGCTACTATTGAGGTATGTCAGATATT 58.246 37.037 0.00 0.00 0.00 1.28
4220 4739 9.277783 ACTATTGAGGTATGTCAGATATTTTGC 57.722 33.333 0.00 0.00 0.00 3.68
4221 4740 9.499479 CTATTGAGGTATGTCAGATATTTTGCT 57.501 33.333 0.00 0.00 0.00 3.91
4223 4742 8.662781 TTGAGGTATGTCAGATATTTTGCTAC 57.337 34.615 0.00 0.00 0.00 3.58
4224 4743 8.023021 TGAGGTATGTCAGATATTTTGCTACT 57.977 34.615 0.00 0.00 0.00 2.57
4225 4744 8.486210 TGAGGTATGTCAGATATTTTGCTACTT 58.514 33.333 0.00 0.00 0.00 2.24
4226 4745 9.331282 GAGGTATGTCAGATATTTTGCTACTTT 57.669 33.333 0.00 0.00 0.00 2.66
4227 4746 9.686683 AGGTATGTCAGATATTTTGCTACTTTT 57.313 29.630 0.00 0.00 0.00 2.27
4228 4747 9.937175 GGTATGTCAGATATTTTGCTACTTTTC 57.063 33.333 0.00 0.00 0.00 2.29
4232 4751 9.844790 TGTCAGATATTTTGCTACTTTTCAATG 57.155 29.630 0.00 0.00 0.00 2.82
4242 4761 7.621832 TGCTACTTTTCAATGAAATGAAACG 57.378 32.000 22.86 11.57 46.06 3.60
4243 4762 6.143758 TGCTACTTTTCAATGAAATGAAACGC 59.856 34.615 22.86 18.07 46.06 4.84
4244 4763 6.143758 GCTACTTTTCAATGAAATGAAACGCA 59.856 34.615 22.86 1.36 46.06 5.24
4245 4764 6.900568 ACTTTTCAATGAAATGAAACGCAA 57.099 29.167 22.86 0.73 46.06 4.85
4246 4765 7.301068 ACTTTTCAATGAAATGAAACGCAAA 57.699 28.000 22.86 0.09 46.06 3.68
4247 4766 7.401080 ACTTTTCAATGAAATGAAACGCAAAG 58.599 30.769 22.86 10.62 46.06 2.77
4248 4767 5.903764 TTCAATGAAATGAAACGCAAAGG 57.096 34.783 0.00 0.00 36.42 3.11
4249 4768 3.740321 TCAATGAAATGAAACGCAAAGGC 59.260 39.130 0.00 0.00 0.00 4.35
4250 4769 3.665745 ATGAAATGAAACGCAAAGGCT 57.334 38.095 0.00 0.00 38.10 4.58
4251 4770 3.451141 TGAAATGAAACGCAAAGGCTT 57.549 38.095 0.00 0.00 38.10 4.35
4252 4771 3.791245 TGAAATGAAACGCAAAGGCTTT 58.209 36.364 6.68 6.68 38.10 3.51
4253 4772 4.187694 TGAAATGAAACGCAAAGGCTTTT 58.812 34.783 10.36 0.00 43.29 2.27
4254 4773 4.633565 TGAAATGAAACGCAAAGGCTTTTT 59.366 33.333 10.36 1.67 41.02 1.94
4255 4774 4.534794 AATGAAACGCAAAGGCTTTTTG 57.465 36.364 10.36 8.17 41.02 2.44
4265 4784 2.119671 AGGCTTTTTGCGTTTTCTCG 57.880 45.000 0.00 0.00 44.05 4.04
4266 4785 1.673920 AGGCTTTTTGCGTTTTCTCGA 59.326 42.857 0.00 0.00 44.05 4.04
4267 4786 2.098443 AGGCTTTTTGCGTTTTCTCGAA 59.902 40.909 0.00 0.00 44.05 3.71
4268 4787 2.855370 GGCTTTTTGCGTTTTCTCGAAA 59.145 40.909 0.00 0.00 44.05 3.46
4269 4788 3.304826 GGCTTTTTGCGTTTTCTCGAAAA 59.695 39.130 0.93 0.93 44.05 2.29
4270 4789 4.496194 GCTTTTTGCGTTTTCTCGAAAAG 58.504 39.130 5.15 9.26 43.40 2.27
4271 4790 4.264380 GCTTTTTGCGTTTTCTCGAAAAGA 59.736 37.500 15.15 0.21 43.31 2.52
4272 4791 5.220135 GCTTTTTGCGTTTTCTCGAAAAGAA 60.220 36.000 15.15 0.00 43.31 2.52
4273 4792 9.445899 GGCTTTTTGCGTTTTCTCGAAAAGAAA 62.446 37.037 15.15 1.39 45.90 2.52
4524 5108 1.477700 TGCTTCATACTTGCATTGGCC 59.522 47.619 0.00 0.00 40.13 5.36
4753 5337 2.505819 ACCGAGGAGCTGGTTATGAAAT 59.494 45.455 0.00 0.00 33.81 2.17
4754 5338 3.054361 ACCGAGGAGCTGGTTATGAAATT 60.054 43.478 0.00 0.00 33.81 1.82
4806 5390 6.473758 ACCAGGTAATCTTCTTGTAAACTCC 58.526 40.000 0.00 0.00 0.00 3.85
4837 5421 4.724399 TGTTGGCATTCTAAGGTTTCTGA 58.276 39.130 0.00 0.00 0.00 3.27
4841 5425 6.916360 TGGCATTCTAAGGTTTCTGAATTT 57.084 33.333 0.00 0.00 0.00 1.82
4871 5455 1.998315 GTGCTGACATGCTGACACTAG 59.002 52.381 0.00 0.00 0.00 2.57
4894 5479 4.322725 GGTCTTTTCATTTTAAGGGGGCAG 60.323 45.833 0.00 0.00 0.00 4.85
5183 5823 5.359860 GGTATTTTCCTTCCCCTTATGTGTG 59.640 44.000 0.00 0.00 0.00 3.82
5193 5833 6.134535 TCCCCTTATGTGTGAACATAAAGT 57.865 37.500 11.31 0.00 40.67 2.66
5194 5834 6.548321 TCCCCTTATGTGTGAACATAAAGTT 58.452 36.000 11.31 0.00 44.93 2.66
5288 5928 4.757149 AGTTTCTGTGAGTTGATTACTGGC 59.243 41.667 0.00 0.00 37.17 4.85
5435 6092 1.229529 GGGTGTGGAGAAGAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
5436 6093 1.268283 GGGTGTGGAGAAGAGGGGAG 61.268 65.000 0.00 0.00 0.00 4.30
5444 6102 2.530151 AAGAGGGGAGGCACAGCA 60.530 61.111 0.00 0.00 0.00 4.41
5513 6180 3.368571 GCCACTGCTGCTTGTCCC 61.369 66.667 0.00 0.00 33.53 4.46
5749 6422 1.672363 TCTTGTTCTTGCTGCTGTGTG 59.328 47.619 0.00 0.00 0.00 3.82
5750 6423 1.402968 CTTGTTCTTGCTGCTGTGTGT 59.597 47.619 0.00 0.00 0.00 3.72
5758 6431 1.016627 GCTGCTGTGTGTTGTCTGAA 58.983 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.809861 ATCGCAGCACTGACCCAAGG 62.810 60.000 0.81 0.00 0.00 3.61
9 10 0.108186 TATCGCAGCACTGACCCAAG 60.108 55.000 0.81 0.00 0.00 3.61
10 11 0.108186 CTATCGCAGCACTGACCCAA 60.108 55.000 0.81 0.00 0.00 4.12
11 12 1.517361 CTATCGCAGCACTGACCCA 59.483 57.895 0.81 0.00 0.00 4.51
12 13 1.227380 CCTATCGCAGCACTGACCC 60.227 63.158 0.81 0.00 0.00 4.46
13 14 1.884926 GCCTATCGCAGCACTGACC 60.885 63.158 0.81 0.00 37.47 4.02
14 15 1.153568 TGCCTATCGCAGCACTGAC 60.154 57.895 0.81 0.00 44.64 3.51
15 16 3.297904 TGCCTATCGCAGCACTGA 58.702 55.556 0.81 0.00 44.64 3.41
22 23 5.471863 TACACTATTGTCCTGCCTATCGCA 61.472 45.833 0.00 0.00 40.45 5.10
23 24 2.224066 ACACTATTGTCCTGCCTATCGC 60.224 50.000 0.00 0.00 38.31 4.58
24 25 3.735237 ACACTATTGTCCTGCCTATCG 57.265 47.619 0.00 0.00 0.00 2.92
25 26 4.561734 GCCTACACTATTGTCCTGCCTATC 60.562 50.000 0.00 0.00 37.15 2.08
26 27 3.325135 GCCTACACTATTGTCCTGCCTAT 59.675 47.826 0.00 0.00 37.15 2.57
27 28 2.698797 GCCTACACTATTGTCCTGCCTA 59.301 50.000 0.00 0.00 37.15 3.93
28 29 1.486726 GCCTACACTATTGTCCTGCCT 59.513 52.381 0.00 0.00 37.15 4.75
29 30 1.209504 TGCCTACACTATTGTCCTGCC 59.790 52.381 0.00 0.00 37.15 4.85
30 31 2.678336 GTTGCCTACACTATTGTCCTGC 59.322 50.000 0.00 0.00 37.15 4.85
31 32 3.937814 TGTTGCCTACACTATTGTCCTG 58.062 45.455 0.00 0.00 37.15 3.86
32 33 4.324267 GTTGTTGCCTACACTATTGTCCT 58.676 43.478 0.00 0.00 36.21 3.85
33 34 3.439129 GGTTGTTGCCTACACTATTGTCC 59.561 47.826 0.00 0.00 36.21 4.02
34 35 3.124636 CGGTTGTTGCCTACACTATTGTC 59.875 47.826 0.00 0.00 36.21 3.18
35 36 3.071479 CGGTTGTTGCCTACACTATTGT 58.929 45.455 0.00 0.00 36.21 2.71
36 37 2.159572 GCGGTTGTTGCCTACACTATTG 60.160 50.000 0.00 0.00 36.21 1.90
37 38 2.081462 GCGGTTGTTGCCTACACTATT 58.919 47.619 0.00 0.00 36.21 1.73
38 39 1.002659 TGCGGTTGTTGCCTACACTAT 59.997 47.619 0.00 0.00 36.21 2.12
39 40 0.393448 TGCGGTTGTTGCCTACACTA 59.607 50.000 0.00 0.00 36.21 2.74
40 41 0.464735 TTGCGGTTGTTGCCTACACT 60.465 50.000 0.00 0.00 36.21 3.55
41 42 0.040425 CTTGCGGTTGTTGCCTACAC 60.040 55.000 0.00 0.00 36.21 2.90
42 43 0.464735 ACTTGCGGTTGTTGCCTACA 60.465 50.000 0.00 0.00 34.12 2.74
43 44 0.237498 GACTTGCGGTTGTTGCCTAC 59.763 55.000 0.00 0.00 0.00 3.18
44 45 0.107831 AGACTTGCGGTTGTTGCCTA 59.892 50.000 0.00 0.00 0.00 3.93
45 46 0.751643 AAGACTTGCGGTTGTTGCCT 60.752 50.000 0.00 0.00 0.00 4.75
46 47 0.102300 AAAGACTTGCGGTTGTTGCC 59.898 50.000 0.00 0.00 0.00 4.52
47 48 1.199624 CAAAGACTTGCGGTTGTTGC 58.800 50.000 0.00 0.00 0.00 4.17
57 58 2.169179 GATTTAGCGCGCAAAGACTTG 58.831 47.619 35.10 0.00 35.49 3.16
58 59 1.130561 GGATTTAGCGCGCAAAGACTT 59.869 47.619 35.10 13.45 0.00 3.01
59 60 0.727398 GGATTTAGCGCGCAAAGACT 59.273 50.000 35.10 14.29 0.00 3.24
60 61 0.727398 AGGATTTAGCGCGCAAAGAC 59.273 50.000 35.10 23.26 0.00 3.01
61 62 1.931172 GTAGGATTTAGCGCGCAAAGA 59.069 47.619 35.10 16.59 0.00 2.52
62 63 1.933853 AGTAGGATTTAGCGCGCAAAG 59.066 47.619 35.10 0.00 0.00 2.77
63 64 1.931172 GAGTAGGATTTAGCGCGCAAA 59.069 47.619 35.10 28.29 0.00 3.68
64 65 1.567504 GAGTAGGATTTAGCGCGCAA 58.432 50.000 35.10 20.69 0.00 4.85
65 66 0.594028 CGAGTAGGATTTAGCGCGCA 60.594 55.000 35.10 16.82 0.00 6.09
66 67 0.317603 TCGAGTAGGATTTAGCGCGC 60.318 55.000 26.66 26.66 0.00 6.86
67 68 1.268386 TGTCGAGTAGGATTTAGCGCG 60.268 52.381 0.00 0.00 0.00 6.86
68 69 2.486951 TGTCGAGTAGGATTTAGCGC 57.513 50.000 0.00 0.00 0.00 5.92
69 70 3.731216 CACATGTCGAGTAGGATTTAGCG 59.269 47.826 0.00 0.00 0.00 4.26
70 71 4.051922 CCACATGTCGAGTAGGATTTAGC 58.948 47.826 0.00 0.00 0.00 3.09
71 72 5.515797 TCCACATGTCGAGTAGGATTTAG 57.484 43.478 0.00 0.00 0.00 1.85
72 73 5.596772 TCATCCACATGTCGAGTAGGATTTA 59.403 40.000 9.77 0.95 33.81 1.40
73 74 4.405680 TCATCCACATGTCGAGTAGGATTT 59.594 41.667 9.77 0.00 33.81 2.17
74 75 3.960755 TCATCCACATGTCGAGTAGGATT 59.039 43.478 9.77 0.00 33.81 3.01
75 76 3.566351 TCATCCACATGTCGAGTAGGAT 58.434 45.455 7.20 7.20 36.35 3.24
76 77 3.012934 TCATCCACATGTCGAGTAGGA 57.987 47.619 0.00 0.00 0.00 2.94
77 78 5.405797 CATATCATCCACATGTCGAGTAGG 58.594 45.833 0.00 0.00 0.00 3.18
78 79 5.183904 TCCATATCATCCACATGTCGAGTAG 59.816 44.000 0.00 0.00 0.00 2.57
79 80 5.076873 TCCATATCATCCACATGTCGAGTA 58.923 41.667 0.00 0.00 0.00 2.59
80 81 3.897505 TCCATATCATCCACATGTCGAGT 59.102 43.478 0.00 0.00 0.00 4.18
81 82 4.525912 TCCATATCATCCACATGTCGAG 57.474 45.455 0.00 0.00 0.00 4.04
82 83 4.800582 GCTTCCATATCATCCACATGTCGA 60.801 45.833 0.00 0.00 0.00 4.20
83 84 3.434641 GCTTCCATATCATCCACATGTCG 59.565 47.826 0.00 0.00 0.00 4.35
84 85 4.214971 GTGCTTCCATATCATCCACATGTC 59.785 45.833 0.00 0.00 0.00 3.06
85 86 4.139786 GTGCTTCCATATCATCCACATGT 58.860 43.478 0.00 0.00 0.00 3.21
86 87 4.215613 CAGTGCTTCCATATCATCCACATG 59.784 45.833 0.00 0.00 0.00 3.21
87 88 4.103627 TCAGTGCTTCCATATCATCCACAT 59.896 41.667 0.00 0.00 0.00 3.21
88 89 3.455543 TCAGTGCTTCCATATCATCCACA 59.544 43.478 0.00 0.00 0.00 4.17
89 90 4.077300 TCAGTGCTTCCATATCATCCAC 57.923 45.455 0.00 0.00 0.00 4.02
90 91 4.776435 TTCAGTGCTTCCATATCATCCA 57.224 40.909 0.00 0.00 0.00 3.41
91 92 4.024556 CGTTTCAGTGCTTCCATATCATCC 60.025 45.833 0.00 0.00 0.00 3.51
92 93 4.553547 GCGTTTCAGTGCTTCCATATCATC 60.554 45.833 0.00 0.00 0.00 2.92
93 94 3.313526 GCGTTTCAGTGCTTCCATATCAT 59.686 43.478 0.00 0.00 0.00 2.45
94 95 2.677836 GCGTTTCAGTGCTTCCATATCA 59.322 45.455 0.00 0.00 0.00 2.15
95 96 2.032178 GGCGTTTCAGTGCTTCCATATC 59.968 50.000 0.00 0.00 0.00 1.63
96 97 2.017049 GGCGTTTCAGTGCTTCCATAT 58.983 47.619 0.00 0.00 0.00 1.78
97 98 1.271108 TGGCGTTTCAGTGCTTCCATA 60.271 47.619 0.00 0.00 0.00 2.74
98 99 0.537143 TGGCGTTTCAGTGCTTCCAT 60.537 50.000 0.00 0.00 0.00 3.41
99 100 0.537143 ATGGCGTTTCAGTGCTTCCA 60.537 50.000 0.00 0.00 0.00 3.53
100 101 0.598065 AATGGCGTTTCAGTGCTTCC 59.402 50.000 0.00 0.00 0.00 3.46
101 102 2.422276 AAATGGCGTTTCAGTGCTTC 57.578 45.000 0.00 0.00 0.00 3.86
102 103 2.159114 ACAAAATGGCGTTTCAGTGCTT 60.159 40.909 4.95 0.00 0.00 3.91
103 104 1.408702 ACAAAATGGCGTTTCAGTGCT 59.591 42.857 4.95 0.00 0.00 4.40
104 105 1.851658 ACAAAATGGCGTTTCAGTGC 58.148 45.000 4.95 0.00 0.00 4.40
105 106 2.467305 CGAACAAAATGGCGTTTCAGTG 59.533 45.455 4.95 3.10 0.00 3.66
106 107 2.356382 TCGAACAAAATGGCGTTTCAGT 59.644 40.909 4.95 4.90 0.00 3.41
107 108 2.993545 TCGAACAAAATGGCGTTTCAG 58.006 42.857 4.95 4.27 0.00 3.02
108 109 3.304257 CATCGAACAAAATGGCGTTTCA 58.696 40.909 4.95 0.00 0.00 2.69
109 110 2.661195 CCATCGAACAAAATGGCGTTTC 59.339 45.455 4.95 0.00 36.31 2.78
110 111 2.671596 CCATCGAACAAAATGGCGTTT 58.328 42.857 0.00 0.00 36.31 3.60
111 112 2.346099 CCATCGAACAAAATGGCGTT 57.654 45.000 0.00 0.00 36.31 4.84
124 125 1.359117 GACGGAGATTCGCCATCGA 59.641 57.895 7.25 0.00 43.89 3.59
125 126 0.527600 TTGACGGAGATTCGCCATCG 60.528 55.000 7.25 0.00 36.93 3.84
126 127 0.931005 GTTGACGGAGATTCGCCATC 59.069 55.000 7.25 1.23 0.00 3.51
127 128 0.249120 TGTTGACGGAGATTCGCCAT 59.751 50.000 7.25 0.00 0.00 4.40
128 129 0.669318 GTGTTGACGGAGATTCGCCA 60.669 55.000 7.25 0.00 0.00 5.69
129 130 1.359459 GGTGTTGACGGAGATTCGCC 61.359 60.000 0.00 0.00 0.00 5.54
130 131 1.359459 GGGTGTTGACGGAGATTCGC 61.359 60.000 0.00 0.00 0.00 4.70
131 132 0.739813 GGGGTGTTGACGGAGATTCG 60.740 60.000 0.00 0.00 0.00 3.34
132 133 0.739813 CGGGGTGTTGACGGAGATTC 60.740 60.000 0.00 0.00 0.00 2.52
133 134 1.295423 CGGGGTGTTGACGGAGATT 59.705 57.895 0.00 0.00 0.00 2.40
134 135 2.978824 CGGGGTGTTGACGGAGAT 59.021 61.111 0.00 0.00 0.00 2.75
139 140 0.392461 AATGATCCGGGGTGTTGACG 60.392 55.000 0.00 0.00 0.00 4.35
140 141 1.339631 TGAATGATCCGGGGTGTTGAC 60.340 52.381 0.00 0.00 0.00 3.18
141 142 0.988063 TGAATGATCCGGGGTGTTGA 59.012 50.000 0.00 0.00 0.00 3.18
142 143 1.472480 GTTGAATGATCCGGGGTGTTG 59.528 52.381 0.00 0.00 0.00 3.33
143 144 1.074727 TGTTGAATGATCCGGGGTGTT 59.925 47.619 0.00 0.00 0.00 3.32
144 145 0.695924 TGTTGAATGATCCGGGGTGT 59.304 50.000 0.00 0.00 0.00 4.16
145 146 2.057137 ATGTTGAATGATCCGGGGTG 57.943 50.000 0.00 0.00 0.00 4.61
146 147 5.500234 CATATATGTTGAATGATCCGGGGT 58.500 41.667 0.00 0.00 0.00 4.95
147 148 4.883585 CCATATATGTTGAATGATCCGGGG 59.116 45.833 11.73 0.00 0.00 5.73
148 149 4.883585 CCCATATATGTTGAATGATCCGGG 59.116 45.833 11.73 0.00 0.00 5.73
149 150 5.586243 GTCCCATATATGTTGAATGATCCGG 59.414 44.000 11.73 0.00 0.00 5.14
150 151 5.291858 CGTCCCATATATGTTGAATGATCCG 59.708 44.000 11.73 3.62 0.00 4.18
151 152 6.406370 TCGTCCCATATATGTTGAATGATCC 58.594 40.000 11.73 0.00 0.00 3.36
152 153 6.536582 CCTCGTCCCATATATGTTGAATGATC 59.463 42.308 11.73 0.00 0.00 2.92
153 154 6.409704 CCTCGTCCCATATATGTTGAATGAT 58.590 40.000 11.73 0.00 0.00 2.45
154 155 5.279960 CCCTCGTCCCATATATGTTGAATGA 60.280 44.000 11.73 8.15 0.00 2.57
155 156 4.937620 CCCTCGTCCCATATATGTTGAATG 59.062 45.833 11.73 4.85 0.00 2.67
156 157 4.019321 CCCCTCGTCCCATATATGTTGAAT 60.019 45.833 11.73 0.00 0.00 2.57
157 158 3.326588 CCCCTCGTCCCATATATGTTGAA 59.673 47.826 11.73 0.00 0.00 2.69
158 159 2.903784 CCCCTCGTCCCATATATGTTGA 59.096 50.000 11.73 5.20 0.00 3.18
159 160 2.903784 TCCCCTCGTCCCATATATGTTG 59.096 50.000 11.73 2.94 0.00 3.33
160 161 3.173965 CTCCCCTCGTCCCATATATGTT 58.826 50.000 11.73 0.00 0.00 2.71
161 162 2.559931 CCTCCCCTCGTCCCATATATGT 60.560 54.545 11.73 0.00 0.00 2.29
162 163 2.111384 CCTCCCCTCGTCCCATATATG 58.889 57.143 5.68 5.68 0.00 1.78
163 164 1.622725 GCCTCCCCTCGTCCCATATAT 60.623 57.143 0.00 0.00 0.00 0.86
164 165 0.252103 GCCTCCCCTCGTCCCATATA 60.252 60.000 0.00 0.00 0.00 0.86
165 166 1.536662 GCCTCCCCTCGTCCCATAT 60.537 63.158 0.00 0.00 0.00 1.78
166 167 2.122989 GCCTCCCCTCGTCCCATA 60.123 66.667 0.00 0.00 0.00 2.74
167 168 4.095400 AGCCTCCCCTCGTCCCAT 62.095 66.667 0.00 0.00 0.00 4.00
168 169 4.779733 GAGCCTCCCCTCGTCCCA 62.780 72.222 0.00 0.00 0.00 4.37
169 170 4.467107 AGAGCCTCCCCTCGTCCC 62.467 72.222 0.00 0.00 36.95 4.46
170 171 3.151022 CAGAGCCTCCCCTCGTCC 61.151 72.222 0.00 0.00 36.95 4.79
171 172 3.151022 CCAGAGCCTCCCCTCGTC 61.151 72.222 0.00 0.00 36.95 4.20
172 173 4.787280 CCCAGAGCCTCCCCTCGT 62.787 72.222 0.00 0.00 36.95 4.18
175 176 4.682714 TTGCCCAGAGCCTCCCCT 62.683 66.667 0.00 0.00 42.71 4.79
176 177 3.651980 CTTTGCCCAGAGCCTCCCC 62.652 68.421 0.00 0.00 42.71 4.81
177 178 2.044551 CTTTGCCCAGAGCCTCCC 60.045 66.667 0.00 0.00 42.71 4.30
178 179 2.044551 CCTTTGCCCAGAGCCTCC 60.045 66.667 0.00 0.00 42.71 4.30
179 180 2.753446 GCCTTTGCCCAGAGCCTC 60.753 66.667 0.00 0.00 42.71 4.70
189 190 2.611224 CCTTGAACAGATTGGCCTTTGC 60.611 50.000 3.32 0.00 0.00 3.68
190 191 2.028748 CCCTTGAACAGATTGGCCTTTG 60.029 50.000 3.32 0.00 0.00 2.77
191 192 2.250924 CCCTTGAACAGATTGGCCTTT 58.749 47.619 3.32 0.00 0.00 3.11
192 193 1.147817 ACCCTTGAACAGATTGGCCTT 59.852 47.619 3.32 0.00 0.00 4.35
193 194 0.779997 ACCCTTGAACAGATTGGCCT 59.220 50.000 3.32 0.00 0.00 5.19
194 195 0.890683 CACCCTTGAACAGATTGGCC 59.109 55.000 0.00 0.00 0.00 5.36
195 196 1.909700 TCACCCTTGAACAGATTGGC 58.090 50.000 0.00 0.00 0.00 4.52
196 197 3.689347 TCATCACCCTTGAACAGATTGG 58.311 45.455 0.00 0.00 34.61 3.16
197 198 6.037940 CACTATCATCACCCTTGAACAGATTG 59.962 42.308 0.00 0.00 34.61 2.67
198 199 6.118170 CACTATCATCACCCTTGAACAGATT 58.882 40.000 0.00 0.00 34.61 2.40
199 200 5.397221 CCACTATCATCACCCTTGAACAGAT 60.397 44.000 0.00 0.00 34.61 2.90
200 201 4.080919 CCACTATCATCACCCTTGAACAGA 60.081 45.833 0.00 0.00 34.61 3.41
201 202 4.080919 TCCACTATCATCACCCTTGAACAG 60.081 45.833 0.00 0.00 34.61 3.16
202 203 3.843619 TCCACTATCATCACCCTTGAACA 59.156 43.478 0.00 0.00 34.61 3.18
203 204 4.487714 TCCACTATCATCACCCTTGAAC 57.512 45.455 0.00 0.00 34.61 3.18
204 205 5.684704 GAATCCACTATCATCACCCTTGAA 58.315 41.667 0.00 0.00 34.61 2.69
205 206 4.202253 CGAATCCACTATCATCACCCTTGA 60.202 45.833 0.00 0.00 35.73 3.02
206 207 4.060900 CGAATCCACTATCATCACCCTTG 58.939 47.826 0.00 0.00 0.00 3.61
207 208 3.071602 CCGAATCCACTATCATCACCCTT 59.928 47.826 0.00 0.00 0.00 3.95
208 209 2.634940 CCGAATCCACTATCATCACCCT 59.365 50.000 0.00 0.00 0.00 4.34
209 210 2.368875 ACCGAATCCACTATCATCACCC 59.631 50.000 0.00 0.00 0.00 4.61
210 211 3.181465 ACACCGAATCCACTATCATCACC 60.181 47.826 0.00 0.00 0.00 4.02
211 212 3.804325 CACACCGAATCCACTATCATCAC 59.196 47.826 0.00 0.00 0.00 3.06
212 213 3.181466 CCACACCGAATCCACTATCATCA 60.181 47.826 0.00 0.00 0.00 3.07
213 214 3.069586 TCCACACCGAATCCACTATCATC 59.930 47.826 0.00 0.00 0.00 2.92
214 215 3.038280 TCCACACCGAATCCACTATCAT 58.962 45.455 0.00 0.00 0.00 2.45
215 216 2.430694 CTCCACACCGAATCCACTATCA 59.569 50.000 0.00 0.00 0.00 2.15
216 217 2.224066 CCTCCACACCGAATCCACTATC 60.224 54.545 0.00 0.00 0.00 2.08
217 218 1.762957 CCTCCACACCGAATCCACTAT 59.237 52.381 0.00 0.00 0.00 2.12
218 219 1.191535 CCTCCACACCGAATCCACTA 58.808 55.000 0.00 0.00 0.00 2.74
219 220 0.544357 TCCTCCACACCGAATCCACT 60.544 55.000 0.00 0.00 0.00 4.00
220 221 0.108138 CTCCTCCACACCGAATCCAC 60.108 60.000 0.00 0.00 0.00 4.02
221 222 0.252057 TCTCCTCCACACCGAATCCA 60.252 55.000 0.00 0.00 0.00 3.41
222 223 0.175989 GTCTCCTCCACACCGAATCC 59.824 60.000 0.00 0.00 0.00 3.01
223 224 0.179134 CGTCTCCTCCACACCGAATC 60.179 60.000 0.00 0.00 0.00 2.52
224 225 1.890894 CGTCTCCTCCACACCGAAT 59.109 57.895 0.00 0.00 0.00 3.34
225 226 2.927580 GCGTCTCCTCCACACCGAA 61.928 63.158 0.00 0.00 0.00 4.30
226 227 3.371063 GCGTCTCCTCCACACCGA 61.371 66.667 0.00 0.00 0.00 4.69
227 228 4.778415 CGCGTCTCCTCCACACCG 62.778 72.222 0.00 0.00 0.00 4.94
228 229 4.436998 CCGCGTCTCCTCCACACC 62.437 72.222 4.92 0.00 0.00 4.16
229 230 3.681835 ACCGCGTCTCCTCCACAC 61.682 66.667 4.92 0.00 0.00 3.82
230 231 3.680786 CACCGCGTCTCCTCCACA 61.681 66.667 4.92 0.00 0.00 4.17
231 232 4.436998 CCACCGCGTCTCCTCCAC 62.437 72.222 4.92 0.00 0.00 4.02
244 245 0.106149 CTACTCATTACCGGCCCACC 59.894 60.000 0.00 0.00 0.00 4.61
245 246 0.828677 ACTACTCATTACCGGCCCAC 59.171 55.000 0.00 0.00 0.00 4.61
246 247 1.117150 GACTACTCATTACCGGCCCA 58.883 55.000 0.00 0.00 0.00 5.36
247 248 0.391966 GGACTACTCATTACCGGCCC 59.608 60.000 0.00 0.00 0.00 5.80
248 249 1.411041 AGGACTACTCATTACCGGCC 58.589 55.000 0.00 0.00 0.00 6.13
249 250 5.123661 GTCTATAGGACTACTCATTACCGGC 59.876 48.000 0.00 0.00 41.46 6.13
250 251 6.740411 GTCTATAGGACTACTCATTACCGG 57.260 45.833 0.00 0.00 41.46 5.28
263 264 5.771165 AGGCTAAGCTAACAGTCTATAGGAC 59.229 44.000 0.00 0.00 44.80 3.85
264 265 5.954757 AGGCTAAGCTAACAGTCTATAGGA 58.045 41.667 0.00 0.00 0.00 2.94
265 266 6.376018 CCTAGGCTAAGCTAACAGTCTATAGG 59.624 46.154 0.00 3.02 29.07 2.57
266 267 6.943718 ACCTAGGCTAAGCTAACAGTCTATAG 59.056 42.308 9.30 0.00 29.07 1.31
267 268 6.850234 ACCTAGGCTAAGCTAACAGTCTATA 58.150 40.000 9.30 0.00 29.07 1.31
268 269 5.707495 ACCTAGGCTAAGCTAACAGTCTAT 58.293 41.667 9.30 0.00 29.07 1.98
269 270 5.126699 ACCTAGGCTAAGCTAACAGTCTA 57.873 43.478 9.30 4.68 0.00 2.59
270 271 3.983821 ACCTAGGCTAAGCTAACAGTCT 58.016 45.455 9.30 2.95 0.00 3.24
271 272 4.888823 ACTACCTAGGCTAAGCTAACAGTC 59.111 45.833 9.30 0.00 0.00 3.51
272 273 4.645588 CACTACCTAGGCTAAGCTAACAGT 59.354 45.833 9.30 0.00 0.00 3.55
273 274 4.645588 ACACTACCTAGGCTAAGCTAACAG 59.354 45.833 9.30 0.00 0.00 3.16
274 275 4.607239 ACACTACCTAGGCTAAGCTAACA 58.393 43.478 9.30 0.00 0.00 2.41
275 276 4.261114 CGACACTACCTAGGCTAAGCTAAC 60.261 50.000 9.30 0.00 0.00 2.34
276 277 3.881688 CGACACTACCTAGGCTAAGCTAA 59.118 47.826 9.30 0.00 0.00 3.09
277 278 3.474600 CGACACTACCTAGGCTAAGCTA 58.525 50.000 9.30 0.00 0.00 3.32
278 279 2.299521 CGACACTACCTAGGCTAAGCT 58.700 52.381 9.30 0.00 0.00 3.74
279 280 1.337387 CCGACACTACCTAGGCTAAGC 59.663 57.143 9.30 0.00 0.00 3.09
280 281 2.617774 GACCGACACTACCTAGGCTAAG 59.382 54.545 9.30 6.76 0.00 2.18
281 282 2.648059 GACCGACACTACCTAGGCTAA 58.352 52.381 9.30 0.00 0.00 3.09
282 283 1.473965 CGACCGACACTACCTAGGCTA 60.474 57.143 9.30 0.00 0.00 3.93
283 284 0.747283 CGACCGACACTACCTAGGCT 60.747 60.000 9.30 0.00 0.00 4.58
284 285 1.028868 ACGACCGACACTACCTAGGC 61.029 60.000 9.30 0.00 0.00 3.93
285 286 0.731417 CACGACCGACACTACCTAGG 59.269 60.000 7.41 7.41 0.00 3.02
286 287 1.396301 GACACGACCGACACTACCTAG 59.604 57.143 0.00 0.00 0.00 3.02
287 288 1.442769 GACACGACCGACACTACCTA 58.557 55.000 0.00 0.00 0.00 3.08
288 289 1.239968 GGACACGACCGACACTACCT 61.240 60.000 0.00 0.00 0.00 3.08
289 290 1.211190 GGACACGACCGACACTACC 59.789 63.158 0.00 0.00 0.00 3.18
290 291 4.855596 GGACACGACCGACACTAC 57.144 61.111 0.00 0.00 0.00 2.73
298 299 1.365699 ATTTACATGCGGACACGACC 58.634 50.000 0.00 0.00 44.60 4.79
299 300 3.615496 AGTTATTTACATGCGGACACGAC 59.385 43.478 0.00 0.00 44.60 4.34
300 301 3.852286 AGTTATTTACATGCGGACACGA 58.148 40.909 0.00 0.00 44.60 4.35
301 302 4.593597 AAGTTATTTACATGCGGACACG 57.406 40.909 0.00 0.00 44.63 4.49
302 303 5.695818 ACAAAGTTATTTACATGCGGACAC 58.304 37.500 0.00 0.00 0.00 3.67
303 304 5.950758 ACAAAGTTATTTACATGCGGACA 57.049 34.783 0.00 0.00 0.00 4.02
304 305 7.431084 CCAATACAAAGTTATTTACATGCGGAC 59.569 37.037 0.00 0.00 0.00 4.79
305 306 7.121463 ACCAATACAAAGTTATTTACATGCGGA 59.879 33.333 0.00 0.00 0.00 5.54
306 307 7.219917 CACCAATACAAAGTTATTTACATGCGG 59.780 37.037 0.00 0.00 0.00 5.69
307 308 7.219917 CCACCAATACAAAGTTATTTACATGCG 59.780 37.037 0.00 0.00 0.00 4.73
308 309 8.247562 TCCACCAATACAAAGTTATTTACATGC 58.752 33.333 0.00 0.00 0.00 4.06
314 315 8.100164 CCCAAATCCACCAATACAAAGTTATTT 58.900 33.333 0.00 0.00 0.00 1.40
315 316 7.310983 CCCCAAATCCACCAATACAAAGTTATT 60.311 37.037 0.00 0.00 0.00 1.40
316 317 6.156083 CCCCAAATCCACCAATACAAAGTTAT 59.844 38.462 0.00 0.00 0.00 1.89
317 318 5.482175 CCCCAAATCCACCAATACAAAGTTA 59.518 40.000 0.00 0.00 0.00 2.24
318 319 4.285775 CCCCAAATCCACCAATACAAAGTT 59.714 41.667 0.00 0.00 0.00 2.66
319 320 3.837731 CCCCAAATCCACCAATACAAAGT 59.162 43.478 0.00 0.00 0.00 2.66
320 321 3.837731 ACCCCAAATCCACCAATACAAAG 59.162 43.478 0.00 0.00 0.00 2.77
321 322 3.863086 ACCCCAAATCCACCAATACAAA 58.137 40.909 0.00 0.00 0.00 2.83
322 323 3.551635 ACCCCAAATCCACCAATACAA 57.448 42.857 0.00 0.00 0.00 2.41
323 324 3.076785 AGAACCCCAAATCCACCAATACA 59.923 43.478 0.00 0.00 0.00 2.29
324 325 3.699538 GAGAACCCCAAATCCACCAATAC 59.300 47.826 0.00 0.00 0.00 1.89
325 326 3.309556 GGAGAACCCCAAATCCACCAATA 60.310 47.826 0.00 0.00 0.00 1.90
326 327 2.559705 GGAGAACCCCAAATCCACCAAT 60.560 50.000 0.00 0.00 0.00 3.16
327 328 1.203125 GGAGAACCCCAAATCCACCAA 60.203 52.381 0.00 0.00 0.00 3.67
328 329 0.407918 GGAGAACCCCAAATCCACCA 59.592 55.000 0.00 0.00 0.00 4.17
329 330 3.283020 GGAGAACCCCAAATCCACC 57.717 57.895 0.00 0.00 0.00 4.61
347 348 3.902218 TCATGCATTAAAGAAGAGGGGG 58.098 45.455 0.00 0.00 0.00 5.40
348 349 5.595542 TGAATCATGCATTAAAGAAGAGGGG 59.404 40.000 0.00 0.00 0.00 4.79
349 350 6.095860 TGTGAATCATGCATTAAAGAAGAGGG 59.904 38.462 0.00 0.00 0.00 4.30
350 351 6.971184 GTGTGAATCATGCATTAAAGAAGAGG 59.029 38.462 0.00 0.00 0.00 3.69
351 352 7.759465 AGTGTGAATCATGCATTAAAGAAGAG 58.241 34.615 0.00 0.00 0.00 2.85
352 353 7.609146 AGAGTGTGAATCATGCATTAAAGAAGA 59.391 33.333 0.00 0.00 0.00 2.87
353 354 7.759465 AGAGTGTGAATCATGCATTAAAGAAG 58.241 34.615 0.00 0.00 0.00 2.85
354 355 7.692460 AGAGTGTGAATCATGCATTAAAGAA 57.308 32.000 0.00 0.00 0.00 2.52
355 356 7.692460 AAGAGTGTGAATCATGCATTAAAGA 57.308 32.000 0.00 0.00 0.00 2.52
356 357 9.447040 CATAAGAGTGTGAATCATGCATTAAAG 57.553 33.333 0.00 0.00 0.00 1.85
357 358 8.959548 ACATAAGAGTGTGAATCATGCATTAAA 58.040 29.630 0.00 0.00 0.00 1.52
358 359 8.510243 ACATAAGAGTGTGAATCATGCATTAA 57.490 30.769 0.00 0.00 0.00 1.40
394 395 7.990055 TCCTCTATCCCTTTCTCTTTCTTTTT 58.010 34.615 0.00 0.00 0.00 1.94
395 396 7.575499 TCCTCTATCCCTTTCTCTTTCTTTT 57.425 36.000 0.00 0.00 0.00 2.27
396 397 7.459444 TCTTCCTCTATCCCTTTCTCTTTCTTT 59.541 37.037 0.00 0.00 0.00 2.52
397 398 6.962902 TCTTCCTCTATCCCTTTCTCTTTCTT 59.037 38.462 0.00 0.00 0.00 2.52
398 399 6.507568 TCTTCCTCTATCCCTTTCTCTTTCT 58.492 40.000 0.00 0.00 0.00 2.52
399 400 6.183360 CCTCTTCCTCTATCCCTTTCTCTTTC 60.183 46.154 0.00 0.00 0.00 2.62
400 401 5.665360 CCTCTTCCTCTATCCCTTTCTCTTT 59.335 44.000 0.00 0.00 0.00 2.52
401 402 5.042979 TCCTCTTCCTCTATCCCTTTCTCTT 60.043 44.000 0.00 0.00 0.00 2.85
402 403 4.484270 TCCTCTTCCTCTATCCCTTTCTCT 59.516 45.833 0.00 0.00 0.00 3.10
403 404 4.810345 TCCTCTTCCTCTATCCCTTTCTC 58.190 47.826 0.00 0.00 0.00 2.87
404 405 4.388575 CCTCCTCTTCCTCTATCCCTTTCT 60.389 50.000 0.00 0.00 0.00 2.52
405 406 3.901222 CCTCCTCTTCCTCTATCCCTTTC 59.099 52.174 0.00 0.00 0.00 2.62
406 407 3.538129 TCCTCCTCTTCCTCTATCCCTTT 59.462 47.826 0.00 0.00 0.00 3.11
407 408 3.142028 CTCCTCCTCTTCCTCTATCCCTT 59.858 52.174 0.00 0.00 0.00 3.95
408 409 2.721906 CTCCTCCTCTTCCTCTATCCCT 59.278 54.545 0.00 0.00 0.00 4.20
409 410 2.719705 TCTCCTCCTCTTCCTCTATCCC 59.280 54.545 0.00 0.00 0.00 3.85
410 411 4.407365 CTTCTCCTCCTCTTCCTCTATCC 58.593 52.174 0.00 0.00 0.00 2.59
411 412 4.105697 TCCTTCTCCTCCTCTTCCTCTATC 59.894 50.000 0.00 0.00 0.00 2.08
412 413 4.058731 TCCTTCTCCTCCTCTTCCTCTAT 58.941 47.826 0.00 0.00 0.00 1.98
413 414 3.461831 CTCCTTCTCCTCCTCTTCCTCTA 59.538 52.174 0.00 0.00 0.00 2.43
414 415 2.244769 CTCCTTCTCCTCCTCTTCCTCT 59.755 54.545 0.00 0.00 0.00 3.69
415 416 2.243736 TCTCCTTCTCCTCCTCTTCCTC 59.756 54.545 0.00 0.00 0.00 3.71
416 417 2.244769 CTCTCCTTCTCCTCCTCTTCCT 59.755 54.545 0.00 0.00 0.00 3.36
417 418 2.243736 TCTCTCCTTCTCCTCCTCTTCC 59.756 54.545 0.00 0.00 0.00 3.46
418 419 3.662759 TCTCTCCTTCTCCTCCTCTTC 57.337 52.381 0.00 0.00 0.00 2.87
419 420 3.309848 CCTTCTCTCCTTCTCCTCCTCTT 60.310 52.174 0.00 0.00 0.00 2.85
420 421 2.244769 CCTTCTCTCCTTCTCCTCCTCT 59.755 54.545 0.00 0.00 0.00 3.69
423 424 1.007842 ACCCTTCTCTCCTTCTCCTCC 59.992 57.143 0.00 0.00 0.00 4.30
430 431 5.190726 CCTTCTCATTAACCCTTCTCTCCTT 59.809 44.000 0.00 0.00 0.00 3.36
441 442 7.123383 TCCTTTTTATCCCCTTCTCATTAACC 58.877 38.462 0.00 0.00 0.00 2.85
446 447 6.354301 CCTCTTCCTTTTTATCCCCTTCTCAT 60.354 42.308 0.00 0.00 0.00 2.90
459 460 5.320277 CCTTCACTCATCCTCTTCCTTTTT 58.680 41.667 0.00 0.00 0.00 1.94
460 461 4.263683 CCCTTCACTCATCCTCTTCCTTTT 60.264 45.833 0.00 0.00 0.00 2.27
461 462 3.265479 CCCTTCACTCATCCTCTTCCTTT 59.735 47.826 0.00 0.00 0.00 3.11
473 474 3.319198 GGTCCGCCCCTTCACTCA 61.319 66.667 0.00 0.00 0.00 3.41
499 500 0.107993 AGACACCGAGCATGACCATG 60.108 55.000 0.00 5.67 41.60 3.66
529 530 2.033407 GTGATGGCATCGAGTTGATTCG 60.033 50.000 21.65 0.00 41.79 3.34
535 536 3.117491 CCATAGTGATGGCATCGAGTT 57.883 47.619 21.65 9.91 46.30 3.01
556 561 3.735746 CGCGTTGACAATGATATCTGCTA 59.264 43.478 11.67 0.00 0.00 3.49
560 565 3.179443 ACCGCGTTGACAATGATATCT 57.821 42.857 11.67 0.00 0.00 1.98
582 587 1.269413 CGTCCACACCTTTCAGTACGT 60.269 52.381 0.00 0.00 0.00 3.57
587 592 2.536761 TTACCGTCCACACCTTTCAG 57.463 50.000 0.00 0.00 0.00 3.02
619 624 0.832135 TGCCACGGTCTCCTCTTTCT 60.832 55.000 0.00 0.00 0.00 2.52
680 685 4.319622 CGTAGGGTTAAAATGTGAACGCAA 60.320 41.667 3.12 0.00 40.06 4.85
687 692 3.128068 GGAAGGCGTAGGGTTAAAATGTG 59.872 47.826 0.00 0.00 0.00 3.21
698 703 2.872732 TCCATACTAGGAAGGCGTAGG 58.127 52.381 0.00 0.00 36.93 3.18
706 711 5.537674 GGGAATACGTCTTCCATACTAGGAA 59.462 44.000 27.88 0.00 45.51 3.36
714 780 4.569719 AACTTGGGAATACGTCTTCCAT 57.430 40.909 27.88 11.93 45.51 3.41
899 972 1.311371 AGGAGGAGGGAGAGGGGAT 60.311 63.158 0.00 0.00 0.00 3.85
907 980 1.460839 TTCTTGGGGAGGAGGAGGGA 61.461 60.000 0.00 0.00 0.00 4.20
908 981 0.985490 CTTCTTGGGGAGGAGGAGGG 60.985 65.000 0.00 0.00 0.00 4.30
910 983 0.908198 CACTTCTTGGGGAGGAGGAG 59.092 60.000 0.00 0.00 35.03 3.69
911 984 0.547712 CCACTTCTTGGGGAGGAGGA 60.548 60.000 0.00 0.00 43.63 3.71
968 1043 0.584396 TAGCGAGCAAACACAAACGG 59.416 50.000 0.00 0.00 0.00 4.44
972 1047 2.244000 GCCTAGCGAGCAAACACAA 58.756 52.632 0.00 0.00 0.00 3.33
1163 1240 5.012354 ACCGGAATAACAGAACAGGTAAAGA 59.988 40.000 9.46 0.00 0.00 2.52
1285 1362 2.100605 AGAACCCAATCTTCGCAGTC 57.899 50.000 0.00 0.00 0.00 3.51
1289 1366 1.402852 GGCAAAGAACCCAATCTTCGC 60.403 52.381 0.00 0.00 38.37 4.70
1290 1367 2.095059 CAGGCAAAGAACCCAATCTTCG 60.095 50.000 0.00 0.00 38.69 3.79
1300 1377 3.214328 TCCTTCAGAACAGGCAAAGAAC 58.786 45.455 0.00 0.00 0.00 3.01
1341 1418 4.885907 CAGGTAAAGCATGGATCAGTCAAT 59.114 41.667 0.00 0.00 0.00 2.57
1342 1419 4.263462 ACAGGTAAAGCATGGATCAGTCAA 60.263 41.667 0.00 0.00 32.37 3.18
1343 1420 3.264193 ACAGGTAAAGCATGGATCAGTCA 59.736 43.478 0.00 0.00 32.37 3.41
1344 1421 3.878778 ACAGGTAAAGCATGGATCAGTC 58.121 45.455 0.00 0.00 32.37 3.51
1499 1578 7.155328 AGAAACTAAGACAGGTGAACACATAG 58.845 38.462 7.25 0.00 0.00 2.23
1529 1608 5.873179 AAAAACGATATCTTTGCTTCGGA 57.127 34.783 0.34 0.00 35.98 4.55
1549 1628 3.070302 GTGCAGTCCCATAAACCCAAAAA 59.930 43.478 0.00 0.00 0.00 1.94
1610 1689 0.601841 TTCCTCCCTGTCGTTTTCGC 60.602 55.000 0.00 0.00 43.73 4.70
1633 1712 2.008329 CATCCTCTTGCAGAGCTTCAC 58.992 52.381 7.44 0.00 40.98 3.18
1732 1811 8.609176 GCAAATGCATGAAAATGTATGAAGAAT 58.391 29.630 0.00 0.00 41.59 2.40
1773 1852 5.181245 GCAGCTCTTTAAGATGGTTGTACAA 59.819 40.000 3.59 3.59 41.84 2.41
1816 1895 9.932207 TGAATACATCAAATCTGCTTCAATTTT 57.068 25.926 0.00 0.00 34.30 1.82
1857 1936 4.623814 GCATACAGCTCCTGTGCA 57.376 55.556 8.06 0.00 45.01 4.57
1971 2050 6.011981 TCCCAAACAAGTCCTATACCAGAAAT 60.012 38.462 0.00 0.00 0.00 2.17
1976 2055 4.431378 TCTCCCAAACAAGTCCTATACCA 58.569 43.478 0.00 0.00 0.00 3.25
2028 2107 4.638421 CACCGAATTGGGCACTTAAATCTA 59.362 41.667 6.38 0.00 44.64 1.98
2090 2169 2.105006 GAGCAAGCTCAACCTCATCA 57.895 50.000 16.69 0.00 42.31 3.07
2202 2281 6.741992 TGTAATGGCACTGAAATCAAGTAG 57.258 37.500 0.00 0.00 0.00 2.57
2207 2286 7.215789 ACAAAAATGTAATGGCACTGAAATCA 58.784 30.769 0.00 0.00 0.00 2.57
2270 2352 3.270027 TGATGGTGCTCCTTGAAATACG 58.730 45.455 6.34 0.00 34.23 3.06
2379 2461 5.236047 CCAGAATATAAGAACAGACAGCTGC 59.764 44.000 15.27 6.85 46.26 5.25
2386 2468 5.357742 TGCAGCCAGAATATAAGAACAGA 57.642 39.130 0.00 0.00 0.00 3.41
2606 2699 2.122813 AGTCCTATGCCCCTCCGG 60.123 66.667 0.00 0.00 0.00 5.14
2944 3037 4.780554 TGGGATTGTGATAGTGTAACAGGA 59.219 41.667 0.00 0.00 41.43 3.86
3158 3251 1.742761 AGGAATCATGCAAGTGACCG 58.257 50.000 0.00 0.00 0.00 4.79
3194 3287 4.019860 ACATGTGCCATCAGAACTTAGTCT 60.020 41.667 0.00 0.00 0.00 3.24
3195 3288 4.256920 ACATGTGCCATCAGAACTTAGTC 58.743 43.478 0.00 0.00 0.00 2.59
3201 3294 3.921119 TCAAACATGTGCCATCAGAAC 57.079 42.857 0.00 0.00 0.00 3.01
3444 3539 2.635915 TCGGGTTTTTCTTCTCAGGCTA 59.364 45.455 0.00 0.00 0.00 3.93
3731 4248 3.529533 ACTGACAGCATGAATACTCTGC 58.470 45.455 1.25 0.00 39.69 4.26
3735 4252 7.112122 TCCAAATTACTGACAGCATGAATACT 58.888 34.615 1.25 0.00 39.69 2.12
3799 4316 3.418684 TCCTAGCAGGTCAAAAGAACC 57.581 47.619 2.68 0.00 36.53 3.62
3839 4358 8.992835 AGAATTAAGGAAGCAAAATCACATTC 57.007 30.769 0.00 0.00 0.00 2.67
3904 4423 4.622933 GCAAAGGTAAATTCCATCAACCCC 60.623 45.833 0.00 0.00 0.00 4.95
3936 4455 4.220382 TGATAGGTTGCCATGTTCTTTTGG 59.780 41.667 0.00 0.00 36.03 3.28
4134 4653 7.675161 TTATGACCTCCTTGATCTGAACATA 57.325 36.000 0.00 0.00 0.00 2.29
4216 4735 8.538856 CGTTTCATTTCATTGAAAAGTAGCAAA 58.461 29.630 15.34 5.64 44.71 3.68
4217 4736 7.306515 GCGTTTCATTTCATTGAAAAGTAGCAA 60.307 33.333 15.34 0.05 44.71 3.91
4218 4737 6.143758 GCGTTTCATTTCATTGAAAAGTAGCA 59.856 34.615 15.34 0.00 44.71 3.49
4219 4738 6.143758 TGCGTTTCATTTCATTGAAAAGTAGC 59.856 34.615 15.34 14.98 44.71 3.58
4220 4739 7.621832 TGCGTTTCATTTCATTGAAAAGTAG 57.378 32.000 15.34 6.85 44.71 2.57
4221 4740 7.993821 TTGCGTTTCATTTCATTGAAAAGTA 57.006 28.000 15.34 3.06 44.71 2.24
4222 4741 6.900568 TTGCGTTTCATTTCATTGAAAAGT 57.099 29.167 15.34 0.00 44.71 2.66
4223 4742 6.847289 CCTTTGCGTTTCATTTCATTGAAAAG 59.153 34.615 15.34 11.41 44.71 2.27
4224 4743 6.713520 CCTTTGCGTTTCATTTCATTGAAAA 58.286 32.000 15.34 0.00 44.71 2.29
4225 4744 5.277250 GCCTTTGCGTTTCATTTCATTGAAA 60.277 36.000 13.88 13.88 41.92 2.69
4226 4745 4.210955 GCCTTTGCGTTTCATTTCATTGAA 59.789 37.500 0.00 0.00 33.89 2.69
4227 4746 3.740321 GCCTTTGCGTTTCATTTCATTGA 59.260 39.130 0.00 0.00 0.00 2.57
4228 4747 3.742369 AGCCTTTGCGTTTCATTTCATTG 59.258 39.130 0.00 0.00 44.33 2.82
4229 4748 3.993920 AGCCTTTGCGTTTCATTTCATT 58.006 36.364 0.00 0.00 44.33 2.57
4230 4749 3.665745 AGCCTTTGCGTTTCATTTCAT 57.334 38.095 0.00 0.00 44.33 2.57
4231 4750 3.451141 AAGCCTTTGCGTTTCATTTCA 57.549 38.095 0.00 0.00 44.33 2.69
4232 4751 4.794248 AAAAGCCTTTGCGTTTCATTTC 57.206 36.364 0.00 0.00 44.23 2.17
4233 4752 4.730324 GCAAAAAGCCTTTGCGTTTCATTT 60.730 37.500 15.68 0.00 46.30 2.32
4234 4753 3.242706 GCAAAAAGCCTTTGCGTTTCATT 60.243 39.130 15.68 0.00 46.30 2.57
4235 4754 2.287644 GCAAAAAGCCTTTGCGTTTCAT 59.712 40.909 15.68 0.00 46.30 2.57
4236 4755 1.663135 GCAAAAAGCCTTTGCGTTTCA 59.337 42.857 15.68 0.00 46.30 2.69
4237 4756 2.367399 GCAAAAAGCCTTTGCGTTTC 57.633 45.000 15.68 0.00 46.30 2.78
4243 4762 3.301771 CGAGAAAACGCAAAAAGCCTTTG 60.302 43.478 4.82 4.82 41.38 2.77
4244 4763 2.857748 CGAGAAAACGCAAAAAGCCTTT 59.142 40.909 0.00 0.00 41.38 3.11
4245 4764 2.098443 TCGAGAAAACGCAAAAAGCCTT 59.902 40.909 0.00 0.00 41.38 4.35
4246 4765 1.673920 TCGAGAAAACGCAAAAAGCCT 59.326 42.857 0.00 0.00 41.38 4.58
4247 4766 2.113910 TCGAGAAAACGCAAAAAGCC 57.886 45.000 0.00 0.00 41.38 4.35
4248 4767 4.264380 TCTTTTCGAGAAAACGCAAAAAGC 59.736 37.500 6.89 0.00 37.19 3.51
4249 4768 5.925189 TCTTTTCGAGAAAACGCAAAAAG 57.075 34.783 6.89 0.00 37.87 2.27
4269 4788 9.521503 GTTTGAAGTAGCAAAAGATCTTTTTCT 57.478 29.630 28.13 28.13 40.45 2.52
4270 4789 8.755941 GGTTTGAAGTAGCAAAAGATCTTTTTC 58.244 33.333 27.08 22.98 40.45 2.29
4271 4790 8.257306 TGGTTTGAAGTAGCAAAAGATCTTTTT 58.743 29.630 27.08 17.83 40.45 1.94
4272 4791 7.706607 GTGGTTTGAAGTAGCAAAAGATCTTTT 59.293 33.333 24.62 24.62 42.91 2.27
4273 4792 7.068716 AGTGGTTTGAAGTAGCAAAAGATCTTT 59.931 33.333 15.11 15.11 39.26 2.52
4274 4793 6.547510 AGTGGTTTGAAGTAGCAAAAGATCTT 59.452 34.615 0.88 0.88 39.26 2.40
4275 4794 6.064717 AGTGGTTTGAAGTAGCAAAAGATCT 58.935 36.000 0.00 0.00 39.26 2.75
4276 4795 6.319141 AGTGGTTTGAAGTAGCAAAAGATC 57.681 37.500 0.00 0.00 39.26 2.75
4277 4796 8.409358 AATAGTGGTTTGAAGTAGCAAAAGAT 57.591 30.769 0.00 0.00 39.26 2.40
4278 4797 7.817418 AATAGTGGTTTGAAGTAGCAAAAGA 57.183 32.000 0.00 0.00 39.26 2.52
4524 5108 8.196802 TGATTGTAAGAACCTTTCATATGACG 57.803 34.615 4.48 0.00 0.00 4.35
4753 5337 8.677148 AATTGAGTTTACTAGCTTTGTCTGAA 57.323 30.769 0.00 0.00 0.00 3.02
4754 5338 8.559536 CAAATTGAGTTTACTAGCTTTGTCTGA 58.440 33.333 0.00 0.00 0.00 3.27
4829 5413 6.442112 CACTTCTTGGAGAAATTCAGAAACC 58.558 40.000 0.00 0.00 33.19 3.27
4837 5421 4.464008 TGTCAGCACTTCTTGGAGAAATT 58.536 39.130 0.00 0.00 33.19 1.82
4841 5425 2.873245 GCATGTCAGCACTTCTTGGAGA 60.873 50.000 0.00 0.00 0.00 3.71
4871 5455 3.580895 TGCCCCCTTAAAATGAAAAGACC 59.419 43.478 0.00 0.00 0.00 3.85
4874 5458 3.582647 ACCTGCCCCCTTAAAATGAAAAG 59.417 43.478 0.00 0.00 0.00 2.27
4930 5515 1.309499 CGCGTCTCTCCTCAACCTCT 61.309 60.000 0.00 0.00 0.00 3.69
4933 5518 2.182030 CCGCGTCTCTCCTCAACC 59.818 66.667 4.92 0.00 0.00 3.77
5044 5676 3.507233 TCCTTGAACATCTCCACATTTGC 59.493 43.478 0.00 0.00 0.00 3.68
5247 5887 3.222173 ACTGTTACATGGCTGGACAAA 57.778 42.857 0.00 0.00 0.00 2.83
5288 5928 7.764443 TCCTTTTCCTTGATATCTGTAAACTCG 59.236 37.037 3.98 0.00 0.00 4.18
5435 6092 2.284112 CCCCCAAATGCTGTGCCT 60.284 61.111 0.00 0.00 0.00 4.75
5436 6093 2.604382 ACCCCCAAATGCTGTGCC 60.604 61.111 0.00 0.00 0.00 5.01
5444 6102 3.205056 TGCTCATTATCTCACCCCCAAAT 59.795 43.478 0.00 0.00 0.00 2.32
5481 6148 2.183555 GGCTGCTGCAGAAATGGC 59.816 61.111 32.30 16.63 41.91 4.40
5716 6389 5.063438 GCAAGAACAAGAAAACCAAGGAAAC 59.937 40.000 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.