Multiple sequence alignment - TraesCS3B01G475900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G475900 chr3B 100.000 6341 0 0 1 6341 724756139 724749799 0.000000e+00 11710.0
1 TraesCS3B01G475900 chr3B 94.083 169 10 0 5574 5742 410043725 410043893 2.270000e-64 257.0
2 TraesCS3B01G475900 chr3B 75.125 599 111 27 5745 6319 573988537 573989121 4.910000e-61 246.0
3 TraesCS3B01G475900 chr3D 95.941 3252 93 13 1713 4960 547309231 547306015 0.000000e+00 5238.0
4 TraesCS3B01G475900 chr3D 95.372 713 24 5 886 1591 547309938 547309228 0.000000e+00 1125.0
5 TraesCS3B01G475900 chr3D 87.681 552 33 11 4977 5500 547306030 547305486 1.510000e-170 610.0
6 TraesCS3B01G475900 chr3D 95.833 168 7 0 5574 5741 238999411 238999578 8.100000e-69 272.0
7 TraesCS3B01G475900 chr3D 96.296 162 6 0 5577 5738 410670063 410670224 3.770000e-67 267.0
8 TraesCS3B01G475900 chr3D 97.015 134 3 1 1589 1722 283321251 283321119 2.300000e-54 224.0
9 TraesCS3B01G475900 chr3D 95.683 139 5 1 1578 1715 496172744 496172882 8.270000e-54 222.0
10 TraesCS3B01G475900 chr3D 93.333 75 5 0 3701 3775 230771244 230771318 1.870000e-20 111.0
11 TraesCS3B01G475900 chr3A 95.716 3268 103 18 1713 4960 684051994 684048744 0.000000e+00 5225.0
12 TraesCS3B01G475900 chr3A 95.346 709 27 5 885 1591 684052695 684051991 0.000000e+00 1122.0
13 TraesCS3B01G475900 chr3A 84.698 562 37 27 4977 5500 684048759 684048209 3.390000e-142 516.0
14 TraesCS3B01G475900 chr3A 94.611 167 9 0 5573 5739 659527395 659527229 6.310000e-65 259.0
15 TraesCS3B01G475900 chr6B 89.456 882 84 7 2 882 143709255 143710128 0.000000e+00 1105.0
16 TraesCS3B01G475900 chr6B 85.270 611 72 6 5746 6341 613351623 613352230 1.170000e-171 614.0
17 TraesCS3B01G475900 chr6B 96.350 137 5 0 1585 1721 67527518 67527382 6.400000e-55 226.0
18 TraesCS3B01G475900 chr1B 86.422 545 59 6 5812 6341 328630052 328629508 3.290000e-162 582.0
19 TraesCS3B01G475900 chr1B 97.015 134 3 1 1585 1717 623731980 623732113 2.300000e-54 224.0
20 TraesCS3B01G475900 chr1B 93.421 76 5 0 3700 3775 357421934 357421859 5.200000e-21 113.0
21 TraesCS3B01G475900 chr5D 86.111 432 54 2 5916 6341 438092255 438092686 1.610000e-125 460.0
22 TraesCS3B01G475900 chr5D 88.038 209 21 3 5541 5746 498722106 498721899 1.770000e-60 244.0
23 TraesCS3B01G475900 chr5D 95.489 133 5 1 1585 1716 382507965 382508097 1.790000e-50 211.0
24 TraesCS3B01G475900 chr5D 75.221 339 68 14 2774 3102 548881504 548881172 5.120000e-31 147.0
25 TraesCS3B01G475900 chr5D 84.459 148 19 4 1255 1400 522032709 522032854 6.630000e-30 143.0
26 TraesCS3B01G475900 chr5D 83.784 148 20 4 1255 1400 522010278 522010423 3.080000e-28 137.0
27 TraesCS3B01G475900 chr5D 82.500 160 23 5 1255 1411 548884280 548884123 1.110000e-27 135.0
28 TraesCS3B01G475900 chr5D 74.481 337 72 12 2775 3102 522034908 522035239 3.990000e-27 134.0
29 TraesCS3B01G475900 chr5D 93.333 75 5 0 3701 3775 203213708 203213782 1.870000e-20 111.0
30 TraesCS3B01G475900 chr4B 96.296 162 6 0 5577 5738 483266540 483266379 3.770000e-67 267.0
31 TraesCS3B01G475900 chr4B 95.152 165 8 0 5577 5741 63753841 63754005 1.750000e-65 261.0
32 TraesCS3B01G475900 chr4B 94.286 140 8 0 1584 1723 352135644 352135505 1.380000e-51 215.0
33 TraesCS3B01G475900 chr4B 92.405 79 6 0 3703 3781 144044396 144044318 5.200000e-21 113.0
34 TraesCS3B01G475900 chr4B 100.000 29 0 0 1021 1049 148504756 148504728 3.000000e-03 54.7
35 TraesCS3B01G475900 chr4A 95.706 163 7 0 5577 5739 669198137 669197975 4.880000e-66 263.0
36 TraesCS3B01G475900 chr4A 75.444 338 69 11 2774 3102 620191256 620190924 1.100000e-32 152.0
37 TraesCS3B01G475900 chr4A 93.590 78 4 1 3701 3777 225326187 225326110 1.440000e-21 115.0
38 TraesCS3B01G475900 chr2D 95.152 165 8 0 5577 5741 445733832 445733668 1.750000e-65 261.0
39 TraesCS3B01G475900 chr2D 94.521 146 5 3 1589 1733 536091153 536091010 8.270000e-54 222.0
40 TraesCS3B01G475900 chr2A 75.585 598 109 29 5746 6319 504284713 504284129 1.750000e-65 261.0
41 TraesCS3B01G475900 chr2A 95.035 141 6 1 1586 1725 559079942 559080082 2.980000e-53 220.0
42 TraesCS3B01G475900 chr1D 74.516 620 120 29 5746 6341 479333924 479333319 1.060000e-57 235.0
43 TraesCS3B01G475900 chr1D 94.667 75 4 0 3701 3775 194467366 194467292 4.020000e-22 117.0
44 TraesCS3B01G475900 chr7D 74.267 614 120 33 5746 6341 535842352 535842945 2.300000e-54 224.0
45 TraesCS3B01G475900 chr2B 93.878 147 6 2 1589 1734 199013852 199013708 1.070000e-52 219.0
46 TraesCS3B01G475900 chr5B 91.026 156 12 2 1568 1722 263801678 263801524 6.440000e-50 209.0
47 TraesCS3B01G475900 chr5B 75.221 339 67 13 2774 3102 700332824 700332493 1.840000e-30 145.0
48 TraesCS3B01G475900 chr5B 83.784 148 20 4 1255 1400 700335688 700335543 3.080000e-28 137.0
49 TraesCS3B01G475900 chr7B 94.667 75 4 0 3701 3775 253646128 253646054 4.020000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G475900 chr3B 724749799 724756139 6340 True 11710.000000 11710 100.000 1 6341 1 chr3B.!!$R1 6340
1 TraesCS3B01G475900 chr3B 573988537 573989121 584 False 246.000000 246 75.125 5745 6319 1 chr3B.!!$F2 574
2 TraesCS3B01G475900 chr3D 547305486 547309938 4452 True 2324.333333 5238 92.998 886 5500 3 chr3D.!!$R2 4614
3 TraesCS3B01G475900 chr3A 684048209 684052695 4486 True 2287.666667 5225 91.920 885 5500 3 chr3A.!!$R2 4615
4 TraesCS3B01G475900 chr6B 143709255 143710128 873 False 1105.000000 1105 89.456 2 882 1 chr6B.!!$F1 880
5 TraesCS3B01G475900 chr6B 613351623 613352230 607 False 614.000000 614 85.270 5746 6341 1 chr6B.!!$F2 595
6 TraesCS3B01G475900 chr1B 328629508 328630052 544 True 582.000000 582 86.422 5812 6341 1 chr1B.!!$R1 529
7 TraesCS3B01G475900 chr2A 504284129 504284713 584 True 261.000000 261 75.585 5746 6319 1 chr2A.!!$R1 573
8 TraesCS3B01G475900 chr1D 479333319 479333924 605 True 235.000000 235 74.516 5746 6341 1 chr1D.!!$R2 595
9 TraesCS3B01G475900 chr7D 535842352 535842945 593 False 224.000000 224 74.267 5746 6341 1 chr7D.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 656 0.107945 GCGAAGATCAGGCTGGACTT 60.108 55.0 15.73 18.68 0.00 3.01 F
1603 1614 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.0 0.00 0.00 0.00 4.37 F
1604 1615 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.0 0.00 0.00 0.00 4.12 F
1605 1616 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.0 0.00 0.00 0.00 3.28 F
2660 2671 0.618968 CCCTAAGGTCTCAGCCTGGT 60.619 60.0 0.00 0.00 39.17 4.00 F
2906 2917 0.758734 TCGGGATCCAGCAATACCTG 59.241 55.0 15.23 0.00 0.00 4.00 F
4709 4743 1.978454 AGCATATGAAGCAGCTTCCC 58.022 50.0 28.73 9.60 39.51 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1709 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12 R
2660 2671 0.407528 TAACTTCATGGGCCCTTGCA 59.592 50.000 28.88 19.72 40.13 4.08 R
3571 3585 1.864711 GAGTGCTACGAAACTGCAACA 59.135 47.619 0.00 0.00 38.50 3.33 R
3586 3600 8.909671 CAATTCATTTTCTAACTTTCTGAGTGC 58.090 33.333 0.00 0.00 39.00 4.40 R
4210 4225 1.129437 GACAAAGTCGATGGCTGCTTC 59.871 52.381 0.00 0.00 0.00 3.86 R
4882 4916 0.618458 TGGTTACCAGATCAGCACCC 59.382 55.000 0.00 0.00 0.00 4.61 R
5557 5629 0.031994 ACATGCCAAACTCAAACCGC 59.968 50.000 0.00 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.622942 GCACTTGAAAATGACCAGTGGA 59.377 45.455 18.40 0.00 0.00 4.02
31 32 1.280457 GACCAGTGGATCAAGGACCT 58.720 55.000 18.40 0.00 0.00 3.85
35 36 0.250513 AGTGGATCAAGGACCTTCGC 59.749 55.000 2.91 0.00 0.00 4.70
61 62 1.003839 ACACGGCATCCATCGTTGT 60.004 52.632 0.00 0.00 37.53 3.32
62 63 0.605319 ACACGGCATCCATCGTTGTT 60.605 50.000 0.00 0.00 37.53 2.83
79 80 4.293415 GTTGTTGATTTCTTGTGCCTCTG 58.707 43.478 0.00 0.00 0.00 3.35
93 94 4.742201 TCTGGCGGCGACTTCAGC 62.742 66.667 16.45 0.00 0.00 4.26
157 158 4.416738 GACTGCTGGAGGGGGCAC 62.417 72.222 0.14 0.00 34.57 5.01
190 191 2.047750 TGCGGCGTACAAGATGCA 60.048 55.556 9.37 0.00 42.40 3.96
198 199 3.126858 GGCGTACAAGATGCATTTCAAGA 59.873 43.478 0.00 0.00 42.40 3.02
203 204 5.068234 ACAAGATGCATTTCAAGACCATG 57.932 39.130 0.00 0.00 0.00 3.66
205 206 2.429610 AGATGCATTTCAAGACCATGCC 59.570 45.455 0.00 0.00 42.31 4.40
212 213 2.047274 AAGACCATGCCGACCACG 60.047 61.111 0.00 0.00 39.43 4.94
223 224 1.300620 CGACCACGAGCCACAGAAA 60.301 57.895 0.00 0.00 42.66 2.52
228 229 1.069022 CCACGAGCCACAGAAACATTG 60.069 52.381 0.00 0.00 0.00 2.82
231 232 2.687935 ACGAGCCACAGAAACATTGTTT 59.312 40.909 14.42 14.42 0.00 2.83
241 242 6.700960 CACAGAAACATTGTTTGGAAATGCTA 59.299 34.615 19.03 0.00 38.36 3.49
244 245 4.192429 ACATTGTTTGGAAATGCTAGGC 57.808 40.909 0.00 0.00 38.36 3.93
269 270 1.464997 GGAACTGTCAAGATGTTCGCC 59.535 52.381 0.00 0.00 40.44 5.54
278 279 0.250901 AGATGTTCGCCTGGTTGCTT 60.251 50.000 0.00 0.00 0.00 3.91
281 282 1.165907 TGTTCGCCTGGTTGCTTCAG 61.166 55.000 0.00 0.00 0.00 3.02
283 284 0.179032 TTCGCCTGGTTGCTTCAGAA 60.179 50.000 0.00 0.00 34.36 3.02
296 297 5.357742 TGCTTCAGAATAACAGGCTATGA 57.642 39.130 0.00 0.00 0.00 2.15
305 306 1.656652 ACAGGCTATGATGCAACGAC 58.343 50.000 0.00 0.00 34.04 4.34
308 309 1.482182 AGGCTATGATGCAACGACAGA 59.518 47.619 0.00 0.00 34.04 3.41
313 314 1.284297 TGATGCAACGACAGACTGCG 61.284 55.000 14.87 14.87 38.97 5.18
338 339 1.677552 GGGATGGCCGAACGGATAT 59.322 57.895 17.63 9.56 37.50 1.63
343 344 1.948104 TGGCCGAACGGATATTTCTG 58.052 50.000 17.63 0.00 37.50 3.02
358 359 7.017645 GGATATTTCTGCAGTTTATGTATGCG 58.982 38.462 14.67 0.00 42.92 4.73
371 372 0.179081 GTATGCGGAACCTGGAGTCC 60.179 60.000 0.73 0.73 0.00 3.85
377 378 2.678934 AACCTGGAGTCCGCGCTA 60.679 61.111 5.56 0.00 0.00 4.26
380 381 2.202623 CTGGAGTCCGCGCTACAC 60.203 66.667 5.56 2.01 0.00 2.90
406 407 2.830370 GGAATGCCCCTTCGCCAG 60.830 66.667 0.00 0.00 0.00 4.85
407 408 2.272146 GAATGCCCCTTCGCCAGA 59.728 61.111 0.00 0.00 0.00 3.86
408 409 1.821332 GAATGCCCCTTCGCCAGAG 60.821 63.158 0.00 0.00 0.00 3.35
409 410 4.496336 ATGCCCCTTCGCCAGAGC 62.496 66.667 0.00 0.00 0.00 4.09
419 420 4.941609 GCCAGAGCGATTTGGAGA 57.058 55.556 15.33 0.00 36.55 3.71
428 429 1.260033 GCGATTTGGAGATCTGCTTCG 59.740 52.381 21.32 21.32 0.00 3.79
446 447 2.409870 GGGCTGGAAAGGATGCACG 61.410 63.158 0.00 0.00 0.00 5.34
452 453 3.386867 GAAAGGATGCACGGCGCTG 62.387 63.158 16.39 16.39 43.06 5.18
488 489 1.617850 CCTGCTCATAGCTCCCTACAG 59.382 57.143 0.00 0.00 42.97 2.74
515 516 2.286872 CTGGAGATGATCAAGCACACC 58.713 52.381 0.00 1.18 0.00 4.16
520 521 2.742372 GATCAAGCACACCGCCGT 60.742 61.111 0.00 0.00 44.04 5.68
545 546 1.352687 GAGAGAAGGGGCCTCAAAACT 59.647 52.381 4.79 0.00 33.25 2.66
560 561 5.065731 CCTCAAAACTATGTTGCTCCTGATC 59.934 44.000 0.00 0.00 0.00 2.92
618 619 2.754375 GAGGAAAGGCCCCACGAA 59.246 61.111 0.00 0.00 37.37 3.85
619 620 1.303282 GAGGAAAGGCCCCACGAAT 59.697 57.895 0.00 0.00 37.37 3.34
620 621 0.748367 GAGGAAAGGCCCCACGAATC 60.748 60.000 0.00 0.00 37.37 2.52
621 622 1.001393 GGAAAGGCCCCACGAATCA 60.001 57.895 0.00 0.00 0.00 2.57
640 641 3.744719 CGACGTCCTCCAGGCGAA 61.745 66.667 10.58 0.00 37.85 4.70
641 642 2.182030 GACGTCCTCCAGGCGAAG 59.818 66.667 3.51 0.00 37.85 3.79
642 643 2.282958 ACGTCCTCCAGGCGAAGA 60.283 61.111 13.99 0.00 37.85 2.87
654 655 1.519719 GCGAAGATCAGGCTGGACT 59.480 57.895 15.73 11.29 0.00 3.85
655 656 0.107945 GCGAAGATCAGGCTGGACTT 60.108 55.000 15.73 18.68 0.00 3.01
685 686 1.220749 GGCTCACCGGAACAGCATA 59.779 57.895 9.46 0.00 34.62 3.14
693 694 1.942657 CCGGAACAGCATACATTGAGG 59.057 52.381 0.00 0.00 0.00 3.86
702 703 1.215173 CATACATTGAGGCCCCCTTCA 59.785 52.381 0.00 0.00 31.76 3.02
725 726 0.464735 ACGAGGCTGCGAGATAGTCT 60.465 55.000 12.16 0.00 31.67 3.24
727 728 1.874231 CGAGGCTGCGAGATAGTCTAA 59.126 52.381 0.00 0.00 28.53 2.10
729 730 3.425625 CGAGGCTGCGAGATAGTCTAATC 60.426 52.174 0.00 0.00 28.53 1.75
730 731 2.486203 AGGCTGCGAGATAGTCTAATCG 59.514 50.000 11.57 11.57 38.19 3.34
731 732 2.484651 GGCTGCGAGATAGTCTAATCGA 59.515 50.000 17.48 0.00 37.35 3.59
784 785 9.533253 TTTTCTATTTCTTCTTCCTTTTGCTTG 57.467 29.630 0.00 0.00 0.00 4.01
799 800 1.003118 TGCTTGTCTCCGTTTAGCCAT 59.997 47.619 0.00 0.00 0.00 4.40
826 828 0.701731 TGATCCCCATGTTTTCCCGT 59.298 50.000 0.00 0.00 0.00 5.28
829 831 3.717392 TGATCCCCATGTTTTCCCGTATA 59.283 43.478 0.00 0.00 0.00 1.47
847 849 8.148351 TCCCGTATACTTCCTTCTAAATCAATG 58.852 37.037 0.56 0.00 0.00 2.82
859 861 2.062971 AATCAATGAAGCCGGCTCAT 57.937 45.000 32.93 28.61 0.00 2.90
862 864 1.152881 AATGAAGCCGGCTCATCCC 60.153 57.895 32.93 16.68 0.00 3.85
873 875 0.462759 GCTCATCCCGGGTCTTTCAG 60.463 60.000 22.86 10.07 0.00 3.02
950 952 4.681978 AAAGCCGCCTTCGCTCGT 62.682 61.111 0.00 0.00 0.00 4.18
951 953 4.681978 AAGCCGCCTTCGCTCGTT 62.682 61.111 0.00 0.00 0.00 3.85
1091 1094 1.672356 GCGCACATGGAGGAGTTGT 60.672 57.895 0.30 0.00 0.00 3.32
1260 1263 1.135139 GAAGATCAGCTGAGCGTGGTA 59.865 52.381 24.87 0.00 35.26 3.25
1418 1427 2.851195 ACGACTGCTTTCTGGTCATTT 58.149 42.857 0.00 0.00 0.00 2.32
1488 1499 4.021104 ACATCAAGAATCTTCAGTCACGGA 60.021 41.667 0.00 0.00 0.00 4.69
1528 1539 8.642020 GTGAAGTTTGCATCTTTTGTCATAATC 58.358 33.333 6.20 0.00 0.00 1.75
1529 1540 8.358895 TGAAGTTTGCATCTTTTGTCATAATCA 58.641 29.630 6.20 0.00 0.00 2.57
1538 1549 9.582431 CATCTTTTGTCATAATCAAGCTGAAAT 57.418 29.630 0.00 0.00 0.00 2.17
1588 1599 8.040716 GCCGATGCTATAAATTATACCTTTGT 57.959 34.615 0.00 0.00 33.53 2.83
1589 1600 9.158233 GCCGATGCTATAAATTATACCTTTGTA 57.842 33.333 0.00 0.00 33.53 2.41
1598 1609 5.803237 ATTATACCTTTGTACTCCCTCCG 57.197 43.478 0.00 0.00 0.00 4.63
1599 1610 2.610438 TACCTTTGTACTCCCTCCGT 57.390 50.000 0.00 0.00 0.00 4.69
1600 1611 1.264295 ACCTTTGTACTCCCTCCGTC 58.736 55.000 0.00 0.00 0.00 4.79
1601 1612 0.535797 CCTTTGTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.00 4.79
1602 1613 0.535797 CTTTGTACTCCCTCCGTCCC 59.464 60.000 0.00 0.00 0.00 4.46
1603 1614 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
1604 1615 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
1605 1616 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1606 1617 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1607 1618 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1608 1619 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1609 1620 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1610 1621 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1611 1622 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1612 1623 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1613 1624 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1614 1625 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1615 1626 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1616 1627 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1617 1628 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1618 1629 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1619 1630 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1620 1631 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1621 1632 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1622 1633 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1623 1634 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1624 1635 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1625 1636 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1626 1637 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1634 1645 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
1635 1646 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
1636 1647 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
1637 1648 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1638 1649 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1639 1650 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
1656 1667 8.475331 ACGGATGTATCTAACACTAAAACTTG 57.525 34.615 0.00 0.00 42.09 3.16
1657 1668 8.308931 ACGGATGTATCTAACACTAAAACTTGA 58.691 33.333 0.00 0.00 42.09 3.02
1658 1669 8.592998 CGGATGTATCTAACACTAAAACTTGAC 58.407 37.037 0.00 0.00 42.09 3.18
1659 1670 9.654663 GGATGTATCTAACACTAAAACTTGACT 57.345 33.333 0.00 0.00 42.09 3.41
1669 1680 8.324163 ACACTAAAACTTGACTTGATACATCC 57.676 34.615 0.00 0.00 0.00 3.51
1670 1681 7.117812 ACACTAAAACTTGACTTGATACATCCG 59.882 37.037 0.00 0.00 0.00 4.18
1671 1682 7.117812 CACTAAAACTTGACTTGATACATCCGT 59.882 37.037 0.00 0.00 0.00 4.69
1672 1683 8.308931 ACTAAAACTTGACTTGATACATCCGTA 58.691 33.333 0.00 0.00 0.00 4.02
1673 1684 9.314321 CTAAAACTTGACTTGATACATCCGTAT 57.686 33.333 0.00 0.00 41.16 3.06
1674 1685 8.561738 AAAACTTGACTTGATACATCCGTATT 57.438 30.769 0.00 0.00 38.48 1.89
1675 1686 8.561738 AAACTTGACTTGATACATCCGTATTT 57.438 30.769 0.00 0.00 38.48 1.40
1676 1687 9.661563 AAACTTGACTTGATACATCCGTATTTA 57.338 29.630 0.00 0.00 38.48 1.40
1677 1688 8.873215 ACTTGACTTGATACATCCGTATTTAG 57.127 34.615 0.00 0.00 38.48 1.85
1678 1689 8.692710 ACTTGACTTGATACATCCGTATTTAGA 58.307 33.333 0.00 0.00 38.48 2.10
1679 1690 8.867112 TTGACTTGATACATCCGTATTTAGAC 57.133 34.615 0.00 0.00 38.48 2.59
1680 1691 8.002984 TGACTTGATACATCCGTATTTAGACA 57.997 34.615 0.00 0.00 38.48 3.41
1681 1692 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
1682 1693 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
1683 1694 9.095065 ACTTGATACATCCGTATTTAGACAAAC 57.905 33.333 0.00 0.00 38.48 2.93
1684 1695 8.428186 TTGATACATCCGTATTTAGACAAACC 57.572 34.615 0.00 0.00 38.48 3.27
1685 1696 7.788026 TGATACATCCGTATTTAGACAAACCT 58.212 34.615 0.00 0.00 38.48 3.50
1686 1697 8.916062 TGATACATCCGTATTTAGACAAACCTA 58.084 33.333 0.00 0.00 38.48 3.08
1687 1698 9.754382 GATACATCCGTATTTAGACAAACCTAA 57.246 33.333 0.00 0.00 38.48 2.69
1688 1699 9.760077 ATACATCCGTATTTAGACAAACCTAAG 57.240 33.333 0.00 0.00 34.53 2.18
1689 1700 7.844009 ACATCCGTATTTAGACAAACCTAAGA 58.156 34.615 0.00 0.00 31.10 2.10
1690 1701 7.763071 ACATCCGTATTTAGACAAACCTAAGAC 59.237 37.037 0.00 0.00 31.10 3.01
1691 1702 7.230849 TCCGTATTTAGACAAACCTAAGACA 57.769 36.000 0.00 0.00 31.10 3.41
1692 1703 7.669427 TCCGTATTTAGACAAACCTAAGACAA 58.331 34.615 0.00 0.00 31.10 3.18
1693 1704 7.816031 TCCGTATTTAGACAAACCTAAGACAAG 59.184 37.037 0.00 0.00 31.10 3.16
1694 1705 7.816031 CCGTATTTAGACAAACCTAAGACAAGA 59.184 37.037 0.00 0.00 31.10 3.02
1695 1706 9.199982 CGTATTTAGACAAACCTAAGACAAGAA 57.800 33.333 0.00 0.00 31.10 2.52
1701 1712 7.716612 AGACAAACCTAAGACAAGAATTTTGG 58.283 34.615 0.00 0.00 0.00 3.28
1702 1713 6.816136 ACAAACCTAAGACAAGAATTTTGGG 58.184 36.000 0.00 0.00 0.00 4.12
1703 1714 6.609616 ACAAACCTAAGACAAGAATTTTGGGA 59.390 34.615 0.00 0.00 0.00 4.37
1704 1715 6.650427 AACCTAAGACAAGAATTTTGGGAC 57.350 37.500 0.00 0.00 0.00 4.46
1705 1716 4.760204 ACCTAAGACAAGAATTTTGGGACG 59.240 41.667 0.00 0.00 0.00 4.79
1706 1717 4.156008 CCTAAGACAAGAATTTTGGGACGG 59.844 45.833 0.00 0.00 0.00 4.79
1707 1718 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1708 1719 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1709 1720 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1710 1721 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1711 1722 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1718 1729 0.686441 TGGGACGGAGGGAGTACATG 60.686 60.000 0.00 0.00 0.00 3.21
1728 1739 3.873952 GAGGGAGTACATGATTGCAGAAC 59.126 47.826 0.00 0.00 0.00 3.01
1790 1801 9.924650 GAGAATGTAACTGAAGACTAAACCTTA 57.075 33.333 0.00 0.00 0.00 2.69
1880 1891 0.953727 TGCATGGTGTGTTTGCTCTC 59.046 50.000 0.00 0.00 37.28 3.20
1930 1941 2.029964 GGAGTGACCCGCGTTTCA 59.970 61.111 4.92 3.76 0.00 2.69
1950 1961 7.042051 CGTTTCAGAAATAGAAGAGTGGAACAA 60.042 37.037 0.00 0.00 44.16 2.83
1979 1990 5.048364 AGAGATCTCCATATCAAGTACGTGC 60.048 44.000 19.30 0.00 0.00 5.34
2112 2123 1.575419 TGGTAACCCCGCTAACTGAT 58.425 50.000 0.00 0.00 35.15 2.90
2592 2603 2.094494 AGTAGCATCACACCACTTCTCG 60.094 50.000 0.00 0.00 0.00 4.04
2660 2671 0.618968 CCCTAAGGTCTCAGCCTGGT 60.619 60.000 0.00 0.00 39.17 4.00
2685 2696 1.598882 GGCCCATGAAGTTAGCTAGC 58.401 55.000 6.62 6.62 0.00 3.42
2715 2726 3.963129 TCCCAGCGGATTAAATTTCTGT 58.037 40.909 0.00 0.00 31.13 3.41
2906 2917 0.758734 TCGGGATCCAGCAATACCTG 59.241 55.000 15.23 0.00 0.00 4.00
2955 2966 6.680874 ATTCTCACAGATGAATGAGCTTTC 57.319 37.500 0.00 0.00 41.82 2.62
2956 2967 5.417754 TCTCACAGATGAATGAGCTTTCT 57.582 39.130 0.00 0.00 41.82 2.52
3210 3222 9.553064 AGTTTGTTATCATGCCAATTTGTTTAA 57.447 25.926 0.00 0.00 0.00 1.52
3586 3600 5.328691 TGTTTCTTTGTTGCAGTTTCGTAG 58.671 37.500 0.00 0.00 0.00 3.51
3776 3790 6.200097 GCTTAGTTGTTGTTGTTATTGTTGGG 59.800 38.462 0.00 0.00 0.00 4.12
3786 3800 6.378564 TGTTGTTATTGTTGGGAGTCAAAGAA 59.621 34.615 0.00 0.00 37.08 2.52
4210 4225 3.679980 CACATCAGAACCGTTTACCTCTG 59.320 47.826 0.00 0.00 37.28 3.35
4391 4406 4.645667 TCGTGTTTGTTGATTCTGATCG 57.354 40.909 0.00 0.00 34.91 3.69
4441 4458 7.275920 AGCAGGTGTTTTCTATATTCGAAGAT 58.724 34.615 10.55 10.55 35.04 2.40
4554 4571 2.440409 ACAGGCAAGTTCATCCATGTC 58.560 47.619 0.00 0.00 0.00 3.06
4684 4718 4.839121 TGCTTCGGAAAATGTAGTATGGT 58.161 39.130 0.00 0.00 0.00 3.55
4709 4743 1.978454 AGCATATGAAGCAGCTTCCC 58.022 50.000 28.73 9.60 39.51 3.97
4797 4831 3.181429 TGGTGGAAGAGCTGGAGAAAATT 60.181 43.478 0.00 0.00 0.00 1.82
4818 4852 2.027285 TGCATTCGTCCATCTTCTCCAA 60.027 45.455 0.00 0.00 0.00 3.53
4925 4959 7.416213 CCAACTTTACACAGAAACATTTCCTCA 60.416 37.037 0.68 0.00 37.92 3.86
4927 4961 7.054124 ACTTTACACAGAAACATTTCCTCAGA 58.946 34.615 0.68 0.00 37.92 3.27
4929 4963 4.392940 ACACAGAAACATTTCCTCAGAGG 58.607 43.478 10.70 10.70 37.92 3.69
4930 4964 4.141390 ACACAGAAACATTTCCTCAGAGGT 60.141 41.667 16.65 0.00 37.92 3.85
4960 4994 3.815401 GCAGACAAACATCACACTAACCT 59.185 43.478 0.00 0.00 0.00 3.50
4961 4995 4.275936 GCAGACAAACATCACACTAACCTT 59.724 41.667 0.00 0.00 0.00 3.50
4962 4996 5.221048 GCAGACAAACATCACACTAACCTTT 60.221 40.000 0.00 0.00 0.00 3.11
4963 4997 6.680378 GCAGACAAACATCACACTAACCTTTT 60.680 38.462 0.00 0.00 0.00 2.27
4964 4998 7.257722 CAGACAAACATCACACTAACCTTTTT 58.742 34.615 0.00 0.00 0.00 1.94
4983 5017 1.414158 TTTTTGCGGGGGAAACATCA 58.586 45.000 0.00 0.00 0.00 3.07
4984 5018 0.676736 TTTTGCGGGGGAAACATCAC 59.323 50.000 0.00 0.00 0.00 3.06
4985 5019 0.468214 TTTGCGGGGGAAACATCACA 60.468 50.000 0.00 0.00 0.00 3.58
4986 5020 1.175983 TTGCGGGGGAAACATCACAC 61.176 55.000 0.00 0.00 0.00 3.82
4987 5021 1.303317 GCGGGGGAAACATCACACT 60.303 57.895 0.00 0.00 0.00 3.55
4988 5022 0.035820 GCGGGGGAAACATCACACTA 60.036 55.000 0.00 0.00 0.00 2.74
4989 5023 1.612199 GCGGGGGAAACATCACACTAA 60.612 52.381 0.00 0.00 0.00 2.24
4990 5024 2.081462 CGGGGGAAACATCACACTAAC 58.919 52.381 0.00 0.00 0.00 2.34
4991 5025 2.443416 GGGGGAAACATCACACTAACC 58.557 52.381 0.00 0.00 0.00 2.85
5042 5076 0.902531 TGAGGAGAATCGGGGTCAAC 59.097 55.000 0.00 0.00 34.37 3.18
5150 5184 2.427453 ACATCTATCCACGGTGTCTGTC 59.573 50.000 7.45 0.00 0.00 3.51
5151 5185 2.509166 TCTATCCACGGTGTCTGTCT 57.491 50.000 7.45 0.00 0.00 3.41
5152 5186 2.092323 TCTATCCACGGTGTCTGTCTG 58.908 52.381 7.45 0.00 0.00 3.51
5153 5187 1.819288 CTATCCACGGTGTCTGTCTGT 59.181 52.381 7.45 0.00 0.00 3.41
5154 5188 0.603569 ATCCACGGTGTCTGTCTGTC 59.396 55.000 7.45 0.00 0.00 3.51
5157 5191 0.030235 CACGGTGTCTGTCTGTCGAA 59.970 55.000 0.00 0.00 0.00 3.71
5163 5197 4.625742 CGGTGTCTGTCTGTCGAATTAAAT 59.374 41.667 0.00 0.00 0.00 1.40
5168 5202 7.689812 GTGTCTGTCTGTCGAATTAAATCATTG 59.310 37.037 0.00 0.00 0.00 2.82
5176 5210 4.104776 CGAATTAAATCATTGTTGGCGCT 58.895 39.130 7.64 0.00 0.00 5.92
5178 5212 2.276472 TAAATCATTGTTGGCGCTGC 57.724 45.000 7.64 0.00 0.00 5.25
5189 5223 2.427410 GCGCTGCCTTTGTGAACG 60.427 61.111 0.00 0.00 0.00 3.95
5214 5248 2.291153 CCAGGTGAACATGTCCCTGATT 60.291 50.000 27.92 2.61 42.77 2.57
5220 5254 3.010472 TGAACATGTCCCTGATTGTCCAT 59.990 43.478 0.00 0.00 0.00 3.41
5274 5308 2.294078 CCAGGCCTTCTTCGAGGGT 61.294 63.158 0.00 0.00 37.29 4.34
5279 5325 0.537188 GCCTTCTTCGAGGGTGATGA 59.463 55.000 0.00 0.00 37.29 2.92
5293 5339 2.138320 GTGATGACGATGGCGATGATT 58.862 47.619 0.00 0.00 41.64 2.57
5296 5342 0.179076 TGACGATGGCGATGATTGCT 60.179 50.000 4.42 0.00 41.64 3.91
5376 5445 0.107410 TGTGTTTTCAGTCAGGGCGT 60.107 50.000 0.00 0.00 0.00 5.68
5381 5450 2.111999 TTTCAGTCAGGGCGTCTGGG 62.112 60.000 7.79 0.59 43.53 4.45
5400 5470 1.285578 GAAAACCGCTGCTGCAAAAA 58.714 45.000 16.29 0.00 39.64 1.94
5401 5471 1.005032 GAAAACCGCTGCTGCAAAAAC 60.005 47.619 16.29 0.00 39.64 2.43
5415 5485 1.061276 CAAAAACCAAAACAACGGCCG 59.939 47.619 26.86 26.86 0.00 6.13
5496 5568 2.919870 GTGCACACACACATGTACATG 58.080 47.619 29.97 29.97 46.61 3.21
5511 5583 5.408204 TGTACATGTACTACGTGGTATCG 57.592 43.478 30.69 9.02 39.36 2.92
5512 5584 5.115480 TGTACATGTACTACGTGGTATCGA 58.885 41.667 30.69 8.35 39.36 3.59
5513 5585 5.584251 TGTACATGTACTACGTGGTATCGAA 59.416 40.000 30.69 7.96 39.36 3.71
5514 5586 5.165911 ACATGTACTACGTGGTATCGAAG 57.834 43.478 15.21 6.71 39.36 3.79
5515 5587 3.680642 TGTACTACGTGGTATCGAAGC 57.319 47.619 15.21 1.85 34.70 3.86
5516 5588 3.009026 TGTACTACGTGGTATCGAAGCA 58.991 45.455 15.21 4.51 34.70 3.91
5517 5589 3.628942 TGTACTACGTGGTATCGAAGCAT 59.371 43.478 15.21 0.00 38.03 3.79
5518 5590 3.079960 ACTACGTGGTATCGAAGCATG 57.920 47.619 1.30 13.70 46.09 4.06
5519 5591 1.787155 CTACGTGGTATCGAAGCATGC 59.213 52.381 10.51 10.51 44.81 4.06
5520 5592 0.108377 ACGTGGTATCGAAGCATGCA 60.108 50.000 21.98 0.00 44.81 3.96
5521 5593 0.578683 CGTGGTATCGAAGCATGCAG 59.421 55.000 21.98 10.95 38.03 4.41
5522 5594 0.305922 GTGGTATCGAAGCATGCAGC 59.694 55.000 21.98 10.16 46.19 5.25
5532 5604 3.521534 GCATGCAGCGTACAGAATG 57.478 52.632 14.21 0.00 46.00 2.67
5543 5615 3.474806 CAGAATGTCGGTCGTGGC 58.525 61.111 0.00 0.00 0.00 5.01
5544 5616 1.079819 CAGAATGTCGGTCGTGGCT 60.080 57.895 0.00 0.00 0.00 4.75
5545 5617 1.078759 CAGAATGTCGGTCGTGGCTC 61.079 60.000 0.00 0.00 0.00 4.70
5546 5618 2.126071 AATGTCGGTCGTGGCTCG 60.126 61.111 1.94 1.94 41.41 5.03
5547 5619 2.814183 GAATGTCGGTCGTGGCTCGT 62.814 60.000 8.94 0.00 40.80 4.18
5548 5620 3.626680 ATGTCGGTCGTGGCTCGTG 62.627 63.158 8.94 1.10 40.80 4.35
5549 5621 4.034258 GTCGGTCGTGGCTCGTGA 62.034 66.667 8.94 3.41 40.80 4.35
5550 5622 3.733960 TCGGTCGTGGCTCGTGAG 61.734 66.667 8.94 0.00 40.80 3.51
5551 5623 3.733960 CGGTCGTGGCTCGTGAGA 61.734 66.667 8.94 0.00 40.80 3.27
5561 5633 2.045242 TCGTGAGAGGCTAGCGGT 60.045 61.111 9.00 0.00 34.84 5.68
5562 5634 1.677966 TCGTGAGAGGCTAGCGGTT 60.678 57.895 9.00 0.00 34.84 4.44
5563 5635 1.215647 CGTGAGAGGCTAGCGGTTT 59.784 57.895 9.00 0.00 0.00 3.27
5564 5636 1.078759 CGTGAGAGGCTAGCGGTTTG 61.079 60.000 9.00 0.00 0.00 2.93
5565 5637 0.246635 GTGAGAGGCTAGCGGTTTGA 59.753 55.000 9.00 0.00 0.00 2.69
5566 5638 0.532573 TGAGAGGCTAGCGGTTTGAG 59.467 55.000 9.00 0.00 0.00 3.02
5567 5639 0.533032 GAGAGGCTAGCGGTTTGAGT 59.467 55.000 9.00 0.00 0.00 3.41
5568 5640 0.977395 AGAGGCTAGCGGTTTGAGTT 59.023 50.000 9.00 0.00 0.00 3.01
5569 5641 1.348036 AGAGGCTAGCGGTTTGAGTTT 59.652 47.619 9.00 0.00 0.00 2.66
5570 5642 1.464997 GAGGCTAGCGGTTTGAGTTTG 59.535 52.381 9.00 0.00 0.00 2.93
5571 5643 0.521735 GGCTAGCGGTTTGAGTTTGG 59.478 55.000 9.00 0.00 0.00 3.28
5572 5644 0.109735 GCTAGCGGTTTGAGTTTGGC 60.110 55.000 0.00 0.00 0.00 4.52
5573 5645 1.234821 CTAGCGGTTTGAGTTTGGCA 58.765 50.000 0.00 0.00 0.00 4.92
5574 5646 1.812571 CTAGCGGTTTGAGTTTGGCAT 59.187 47.619 0.00 0.00 0.00 4.40
5575 5647 0.314935 AGCGGTTTGAGTTTGGCATG 59.685 50.000 0.00 0.00 0.00 4.06
5576 5648 0.031994 GCGGTTTGAGTTTGGCATGT 59.968 50.000 0.00 0.00 0.00 3.21
5577 5649 1.268352 GCGGTTTGAGTTTGGCATGTA 59.732 47.619 0.00 0.00 0.00 2.29
5578 5650 2.920647 GCGGTTTGAGTTTGGCATGTAC 60.921 50.000 0.00 0.00 0.00 2.90
5579 5651 2.552315 CGGTTTGAGTTTGGCATGTACT 59.448 45.455 0.00 0.00 0.00 2.73
5580 5652 3.364964 CGGTTTGAGTTTGGCATGTACTC 60.365 47.826 14.44 14.44 38.96 2.59
5581 5653 3.057526 GGTTTGAGTTTGGCATGTACTCC 60.058 47.826 17.08 6.73 37.97 3.85
5582 5654 2.489938 TGAGTTTGGCATGTACTCCC 57.510 50.000 17.08 0.00 37.97 4.30
5583 5655 1.985159 TGAGTTTGGCATGTACTCCCT 59.015 47.619 17.08 0.00 37.97 4.20
5584 5656 2.027192 TGAGTTTGGCATGTACTCCCTC 60.027 50.000 17.08 5.64 37.97 4.30
5585 5657 1.282157 AGTTTGGCATGTACTCCCTCC 59.718 52.381 0.00 0.00 0.00 4.30
5586 5658 0.251916 TTTGGCATGTACTCCCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
5587 5659 0.907704 TTGGCATGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
5588 5660 0.907704 TGGCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
5589 5661 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
5590 5662 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
5591 5663 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
5592 5664 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
5593 5665 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5594 5666 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5595 5667 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5596 5668 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5597 5669 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5598 5670 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
5599 5671 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
5600 5672 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5601 5673 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5602 5674 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5603 5675 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5604 5676 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5605 5677 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5606 5678 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5607 5679 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5670 5742 8.798859 ATGCATTTTAGAGTGTAGATTCACTT 57.201 30.769 0.00 0.00 46.81 3.16
5671 5743 9.890629 ATGCATTTTAGAGTGTAGATTCACTTA 57.109 29.630 0.00 0.00 46.81 2.24
5672 5744 9.890629 TGCATTTTAGAGTGTAGATTCACTTAT 57.109 29.630 0.98 0.00 46.81 1.73
5678 5750 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
5679 5751 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
5680 5752 9.289782 AGAGTGTAGATTCACTTATTTTGCTTT 57.710 29.630 0.98 0.00 46.81 3.51
5681 5753 9.334693 GAGTGTAGATTCACTTATTTTGCTTTG 57.665 33.333 0.98 0.00 46.81 2.77
5682 5754 8.850156 AGTGTAGATTCACTTATTTTGCTTTGT 58.150 29.630 0.00 0.00 44.92 2.83
5691 5763 8.726988 TCACTTATTTTGCTTTGTATGTAGTCC 58.273 33.333 0.00 0.00 0.00 3.85
5692 5764 8.511321 CACTTATTTTGCTTTGTATGTAGTCCA 58.489 33.333 0.00 0.00 0.00 4.02
5693 5765 9.243105 ACTTATTTTGCTTTGTATGTAGTCCAT 57.757 29.630 0.00 0.00 37.58 3.41
5696 5768 8.807948 ATTTTGCTTTGTATGTAGTCCATAGT 57.192 30.769 0.00 0.00 36.71 2.12
5697 5769 7.609760 TTTGCTTTGTATGTAGTCCATAGTG 57.390 36.000 0.00 0.00 36.71 2.74
5698 5770 5.670485 TGCTTTGTATGTAGTCCATAGTGG 58.330 41.667 0.00 0.00 36.71 4.00
5699 5771 5.423931 TGCTTTGTATGTAGTCCATAGTGGA 59.576 40.000 0.00 0.00 45.98 4.02
5713 5785 7.113658 TCCATAGTGGAATCTCTACAAAGAC 57.886 40.000 0.00 0.00 45.00 3.01
5714 5786 6.897966 TCCATAGTGGAATCTCTACAAAGACT 59.102 38.462 0.00 0.00 45.00 3.24
5715 5787 7.400339 TCCATAGTGGAATCTCTACAAAGACTT 59.600 37.037 0.00 0.00 45.00 3.01
5716 5788 8.696374 CCATAGTGGAATCTCTACAAAGACTTA 58.304 37.037 0.00 0.00 40.96 2.24
5731 5803 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5732 5804 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5733 5805 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5734 5806 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5735 5807 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5736 5808 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5737 5809 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5738 5810 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
5739 5811 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
5740 5812 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
5741 5813 4.524802 TTAGGAACGGAGGGAGTACATA 57.475 45.455 0.00 0.00 0.00 2.29
5742 5814 2.664015 AGGAACGGAGGGAGTACATAC 58.336 52.381 0.00 0.00 0.00 2.39
5743 5815 1.685517 GGAACGGAGGGAGTACATACC 59.314 57.143 0.00 0.00 0.00 2.73
5763 5835 0.623617 ATCCCCGAAACCTAAGGGCT 60.624 55.000 0.00 0.00 43.74 5.19
5764 5836 1.223763 CCCCGAAACCTAAGGGCTC 59.776 63.158 0.00 0.00 43.74 4.70
5825 5898 3.455152 CCGCTGATCCCATCGGTA 58.545 61.111 0.00 0.00 44.50 4.02
5834 5907 2.822637 CCCATCGGTAGGCTGCCAT 61.823 63.158 22.65 11.02 0.00 4.40
5873 5946 2.686106 GGCGACACCCTCCCCTTA 60.686 66.667 0.00 0.00 0.00 2.69
5917 5999 1.207791 CTCCAGCAACCCTAGGTCAT 58.792 55.000 8.29 0.00 33.12 3.06
5953 6035 0.252881 TGGGAAGCTGGACATCTCCT 60.253 55.000 0.00 0.00 37.48 3.69
5954 6036 0.915364 GGGAAGCTGGACATCTCCTT 59.085 55.000 0.00 0.00 37.48 3.36
5968 6050 3.795688 TCTCCTTGGAAGAAGCAACAT 57.204 42.857 0.00 0.00 0.00 2.71
5980 6062 1.812235 AGCAACATCGCTTGTGATCA 58.188 45.000 0.00 0.00 39.99 2.92
6018 6100 1.911269 TCCGGTGAAGTGGCTGCTA 60.911 57.895 0.00 0.00 0.00 3.49
6022 6104 0.537188 GGTGAAGTGGCTGCTAGCTA 59.463 55.000 17.23 1.31 41.99 3.32
6142 6230 3.002246 TGAACATGTTCGTTGCAGAGTTC 59.998 43.478 28.55 6.28 42.28 3.01
6170 6258 6.177610 ACCTAGAGAGATCGTGATAGGATTC 58.822 44.000 18.27 0.00 34.99 2.52
6184 6272 2.041301 ATTCGGGTCGGATCCCCA 60.041 61.111 6.06 0.00 44.32 4.96
6237 6325 1.006220 AGTTCGACGACTGCATGCA 60.006 52.632 21.29 21.29 0.00 3.96
6253 6341 1.527034 TGCAGCCTGATGAAGTCAAC 58.473 50.000 0.00 0.00 36.14 3.18
6286 6374 0.112412 AGGTGTGGGCTAGGGTTTTG 59.888 55.000 0.00 0.00 0.00 2.44
6325 6414 3.518705 GAGAGATGATGCATGGTCCCTAT 59.481 47.826 2.46 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.622942 TCCACTGGTCATTTTCAAGTGC 59.377 45.455 0.00 0.00 0.00 4.40
14 15 1.406069 CGAAGGTCCTTGATCCACTGG 60.406 57.143 9.46 0.00 0.00 4.00
19 20 0.744771 GTGGCGAAGGTCCTTGATCC 60.745 60.000 9.46 7.58 0.00 3.36
21 22 1.079127 CGTGGCGAAGGTCCTTGAT 60.079 57.895 9.46 0.00 0.00 2.57
31 32 4.953868 CCGTGTCACCGTGGCGAA 62.954 66.667 0.00 0.00 0.00 4.70
35 36 3.118454 GATGCCGTGTCACCGTGG 61.118 66.667 0.00 0.00 0.00 4.94
82 83 3.123620 CAGCCTGCTGAAGTCGCC 61.124 66.667 13.85 0.00 46.30 5.54
120 121 3.005684 GTCCAAACAATCTGGTCATGCAA 59.994 43.478 0.00 0.00 35.30 4.08
173 174 1.024046 AATGCATCTTGTACGCCGCA 61.024 50.000 0.00 0.00 0.00 5.69
190 191 1.271871 TGGTCGGCATGGTCTTGAAAT 60.272 47.619 0.00 0.00 0.00 2.17
198 199 4.760047 GCTCGTGGTCGGCATGGT 62.760 66.667 0.00 0.00 37.69 3.55
205 206 1.300620 TTTCTGTGGCTCGTGGTCG 60.301 57.895 0.00 0.00 38.55 4.79
212 213 3.068024 TCCAAACAATGTTTCTGTGGCTC 59.932 43.478 8.59 0.00 0.00 4.70
223 224 3.367292 CGCCTAGCATTTCCAAACAATGT 60.367 43.478 0.00 0.00 34.58 2.71
241 242 2.738213 CTTGACAGTTCCTGGCGCCT 62.738 60.000 29.70 3.54 43.58 5.52
244 245 1.081892 CATCTTGACAGTTCCTGGCG 58.918 55.000 0.00 0.00 43.58 5.69
269 270 3.119708 GCCTGTTATTCTGAAGCAACCAG 60.120 47.826 12.45 10.22 0.00 4.00
278 279 5.294734 TGCATCATAGCCTGTTATTCTGA 57.705 39.130 0.00 0.00 0.00 3.27
281 282 4.511454 TCGTTGCATCATAGCCTGTTATTC 59.489 41.667 0.00 0.00 0.00 1.75
283 284 3.809832 GTCGTTGCATCATAGCCTGTTAT 59.190 43.478 0.00 0.00 0.00 1.89
296 297 2.029288 CCGCAGTCTGTCGTTGCAT 61.029 57.895 13.22 0.00 37.69 3.96
305 306 3.465403 CCCCTCCTCCGCAGTCTG 61.465 72.222 0.00 0.00 0.00 3.51
308 309 2.765807 CATCCCCTCCTCCGCAGT 60.766 66.667 0.00 0.00 0.00 4.40
313 314 4.880426 TCGGCCATCCCCTCCTCC 62.880 72.222 2.24 0.00 0.00 4.30
338 339 4.257731 TCCGCATACATAAACTGCAGAAA 58.742 39.130 23.35 5.21 35.64 2.52
343 344 2.943033 AGGTTCCGCATACATAAACTGC 59.057 45.455 0.00 0.00 0.00 4.40
371 372 2.167219 CCACATCAGGTGTAGCGCG 61.167 63.158 0.00 0.00 46.44 6.86
377 378 0.323725 GGCATTCCCACATCAGGTGT 60.324 55.000 0.00 0.00 46.44 4.16
402 403 1.202627 AGATCTCCAAATCGCTCTGGC 60.203 52.381 0.00 0.00 32.33 4.85
404 405 1.865970 GCAGATCTCCAAATCGCTCTG 59.134 52.381 0.00 0.00 34.61 3.35
405 406 1.761784 AGCAGATCTCCAAATCGCTCT 59.238 47.619 0.00 0.00 33.39 4.09
406 407 2.237393 AGCAGATCTCCAAATCGCTC 57.763 50.000 0.00 0.00 33.39 5.03
407 408 2.559440 GAAGCAGATCTCCAAATCGCT 58.441 47.619 0.00 0.00 37.22 4.93
408 409 1.260033 CGAAGCAGATCTCCAAATCGC 59.740 52.381 0.00 0.00 0.00 4.58
409 410 1.863454 CCGAAGCAGATCTCCAAATCG 59.137 52.381 0.00 0.00 0.00 3.34
410 411 2.216898 CCCGAAGCAGATCTCCAAATC 58.783 52.381 0.00 0.00 0.00 2.17
428 429 2.409870 CGTGCATCCTTTCCAGCCC 61.410 63.158 0.00 0.00 0.00 5.19
488 489 0.179702 TGATCATCTCCAGGCAGTGC 59.820 55.000 6.55 6.55 0.00 4.40
520 521 3.077556 GGCCCCTTCTCTCGCTGA 61.078 66.667 0.00 0.00 0.00 4.26
545 546 2.554142 CAAGCGATCAGGAGCAACATA 58.446 47.619 0.00 0.00 35.48 2.29
560 561 0.388907 CCTTCCAAATGTGCCAAGCG 60.389 55.000 0.00 0.00 0.00 4.68
600 601 2.211468 ATTCGTGGGGCCTTTCCTCC 62.211 60.000 0.84 0.00 32.90 4.30
618 619 1.890894 CCTGGAGGACGTCGTTGAT 59.109 57.895 12.67 0.00 37.39 2.57
619 620 2.927580 GCCTGGAGGACGTCGTTGA 61.928 63.158 12.67 1.33 37.39 3.18
620 621 2.432628 GCCTGGAGGACGTCGTTG 60.433 66.667 12.67 6.11 37.39 4.10
621 622 4.052229 CGCCTGGAGGACGTCGTT 62.052 66.667 12.67 1.06 37.39 3.85
640 641 0.392193 CGCAAAGTCCAGCCTGATCT 60.392 55.000 0.00 0.00 0.00 2.75
641 642 1.986575 GCGCAAAGTCCAGCCTGATC 61.987 60.000 0.30 0.00 0.00 2.92
642 643 2.042831 GCGCAAAGTCCAGCCTGAT 61.043 57.895 0.30 0.00 0.00 2.90
672 673 2.632377 CTCAATGTATGCTGTTCCGGT 58.368 47.619 0.00 0.00 0.00 5.28
674 675 1.331756 GCCTCAATGTATGCTGTTCCG 59.668 52.381 0.00 0.00 0.00 4.30
678 679 0.106519 GGGGCCTCAATGTATGCTGT 60.107 55.000 0.84 0.00 0.00 4.40
685 686 1.693640 CTGAAGGGGGCCTCAATGT 59.306 57.895 5.99 0.00 30.89 2.71
702 703 2.626255 TATCTCGCAGCCTCGTCCCT 62.626 60.000 0.00 0.00 0.00 4.20
707 708 1.514003 TAGACTATCTCGCAGCCTCG 58.486 55.000 0.00 0.00 0.00 4.63
710 711 2.484651 TCGATTAGACTATCTCGCAGCC 59.515 50.000 9.13 0.00 0.00 4.85
725 726 1.040646 CCCTAGTGCCAGCTCGATTA 58.959 55.000 0.00 0.00 0.00 1.75
727 728 1.381872 ACCCTAGTGCCAGCTCGAT 60.382 57.895 0.00 0.00 0.00 3.59
729 730 2.185350 CACCCTAGTGCCAGCTCG 59.815 66.667 0.00 0.00 37.14 5.03
761 762 7.721399 AGACAAGCAAAAGGAAGAAGAAATAGA 59.279 33.333 0.00 0.00 0.00 1.98
770 771 2.158813 ACGGAGACAAGCAAAAGGAAGA 60.159 45.455 0.00 0.00 0.00 2.87
783 784 2.499693 TGATCATGGCTAAACGGAGACA 59.500 45.455 0.00 0.00 39.34 3.41
784 785 2.866762 GTGATCATGGCTAAACGGAGAC 59.133 50.000 0.00 0.00 0.00 3.36
826 828 9.561069 GGCTTCATTGATTTAGAAGGAAGTATA 57.439 33.333 0.00 0.00 41.24 1.47
829 831 5.355350 CGGCTTCATTGATTTAGAAGGAAGT 59.645 40.000 0.00 0.00 41.24 3.01
847 849 4.918201 CCGGGATGAGCCGGCTTC 62.918 72.222 33.34 24.91 42.67 3.86
881 883 5.227152 GCGTAATGGTGATTTTCCAGTTTT 58.773 37.500 0.00 0.00 38.42 2.43
882 884 4.321675 GGCGTAATGGTGATTTTCCAGTTT 60.322 41.667 0.00 0.00 38.42 2.66
883 885 3.192633 GGCGTAATGGTGATTTTCCAGTT 59.807 43.478 0.00 0.00 38.42 3.16
894 896 1.732259 GACACTTCAGGCGTAATGGTG 59.268 52.381 0.00 0.00 0.00 4.17
950 952 2.698274 TGCTGACTCCTTCACTGTACAA 59.302 45.455 0.00 0.00 0.00 2.41
951 953 2.297315 CTGCTGACTCCTTCACTGTACA 59.703 50.000 0.00 0.00 0.00 2.90
985 988 1.233285 GCCATATCTTCCGGCAGCAG 61.233 60.000 0.00 0.00 45.52 4.24
1120 1123 1.782201 ATTGCCAGTCTCCTGCCACA 61.782 55.000 0.00 0.00 37.38 4.17
1260 1263 2.140717 GACGAACCACCGAACTTCATT 58.859 47.619 0.00 0.00 0.00 2.57
1344 1347 4.176851 GAGAGGACGACGACGGGC 62.177 72.222 12.58 3.11 44.46 6.13
1488 1499 7.822658 TGCAAACTTCACTTTAACTAACACTT 58.177 30.769 0.00 0.00 0.00 3.16
1528 1539 5.793952 CAGATTCTTGACGAATTTCAGCTTG 59.206 40.000 0.00 0.00 42.31 4.01
1529 1540 5.471456 ACAGATTCTTGACGAATTTCAGCTT 59.529 36.000 0.00 0.00 42.31 3.74
1577 1588 4.613437 ACGGAGGGAGTACAAAGGTATAA 58.387 43.478 0.00 0.00 0.00 0.98
1582 1593 0.535797 GGACGGAGGGAGTACAAAGG 59.464 60.000 0.00 0.00 0.00 3.11
1587 1598 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
1588 1599 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1589 1600 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1590 1601 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1591 1602 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1592 1603 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
1593 1604 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1594 1605 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1595 1606 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1596 1607 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1597 1608 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1598 1609 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1599 1610 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1600 1611 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1608 1619 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1609 1620 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1610 1621 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1611 1622 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1612 1623 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1613 1624 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1630 1641 9.577110 CAAGTTTTAGTGTTAGATACATCCGTA 57.423 33.333 0.00 0.00 39.39 4.02
1631 1642 8.308931 TCAAGTTTTAGTGTTAGATACATCCGT 58.691 33.333 0.00 0.00 39.39 4.69
1632 1643 8.592998 GTCAAGTTTTAGTGTTAGATACATCCG 58.407 37.037 0.00 0.00 39.39 4.18
1633 1644 9.654663 AGTCAAGTTTTAGTGTTAGATACATCC 57.345 33.333 0.00 0.00 39.39 3.51
1643 1654 8.784043 GGATGTATCAAGTCAAGTTTTAGTGTT 58.216 33.333 0.00 0.00 0.00 3.32
1644 1655 7.117812 CGGATGTATCAAGTCAAGTTTTAGTGT 59.882 37.037 0.00 0.00 0.00 3.55
1645 1656 7.117812 ACGGATGTATCAAGTCAAGTTTTAGTG 59.882 37.037 0.00 0.00 0.00 2.74
1646 1657 7.159372 ACGGATGTATCAAGTCAAGTTTTAGT 58.841 34.615 0.00 0.00 0.00 2.24
1647 1658 7.596749 ACGGATGTATCAAGTCAAGTTTTAG 57.403 36.000 0.00 0.00 0.00 1.85
1648 1659 9.661563 AATACGGATGTATCAAGTCAAGTTTTA 57.338 29.630 0.00 0.00 40.42 1.52
1649 1660 8.561738 AATACGGATGTATCAAGTCAAGTTTT 57.438 30.769 0.00 0.00 40.42 2.43
1650 1661 8.561738 AAATACGGATGTATCAAGTCAAGTTT 57.438 30.769 0.00 0.00 40.42 2.66
1651 1662 9.314321 CTAAATACGGATGTATCAAGTCAAGTT 57.686 33.333 0.00 0.00 40.42 2.66
1652 1663 8.692710 TCTAAATACGGATGTATCAAGTCAAGT 58.307 33.333 0.00 0.00 40.42 3.16
1653 1664 8.969267 GTCTAAATACGGATGTATCAAGTCAAG 58.031 37.037 0.00 0.00 40.42 3.02
1654 1665 8.471609 TGTCTAAATACGGATGTATCAAGTCAA 58.528 33.333 0.00 0.00 40.42 3.18
1655 1666 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
1656 1667 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
1657 1668 9.095065 GTTTGTCTAAATACGGATGTATCAAGT 57.905 33.333 0.00 0.00 40.42 3.16
1658 1669 8.548721 GGTTTGTCTAAATACGGATGTATCAAG 58.451 37.037 0.00 0.00 40.42 3.02
1659 1670 8.262227 AGGTTTGTCTAAATACGGATGTATCAA 58.738 33.333 0.00 0.00 40.42 2.57
1660 1671 7.788026 AGGTTTGTCTAAATACGGATGTATCA 58.212 34.615 0.00 0.00 40.42 2.15
1661 1672 9.754382 TTAGGTTTGTCTAAATACGGATGTATC 57.246 33.333 0.00 0.00 40.42 2.24
1662 1673 9.760077 CTTAGGTTTGTCTAAATACGGATGTAT 57.240 33.333 0.00 0.00 43.14 2.29
1663 1674 8.970020 TCTTAGGTTTGTCTAAATACGGATGTA 58.030 33.333 0.00 0.00 34.45 2.29
1664 1675 7.763071 GTCTTAGGTTTGTCTAAATACGGATGT 59.237 37.037 0.00 0.00 0.00 3.06
1665 1676 7.762615 TGTCTTAGGTTTGTCTAAATACGGATG 59.237 37.037 0.00 0.00 0.00 3.51
1666 1677 7.844009 TGTCTTAGGTTTGTCTAAATACGGAT 58.156 34.615 0.00 0.00 0.00 4.18
1667 1678 7.230849 TGTCTTAGGTTTGTCTAAATACGGA 57.769 36.000 0.00 0.00 0.00 4.69
1668 1679 7.816031 TCTTGTCTTAGGTTTGTCTAAATACGG 59.184 37.037 0.00 0.00 0.00 4.02
1669 1680 8.752766 TCTTGTCTTAGGTTTGTCTAAATACG 57.247 34.615 0.00 0.00 0.00 3.06
1675 1686 8.846211 CCAAAATTCTTGTCTTAGGTTTGTCTA 58.154 33.333 0.00 0.00 0.00 2.59
1676 1687 7.201911 CCCAAAATTCTTGTCTTAGGTTTGTCT 60.202 37.037 0.00 0.00 0.00 3.41
1677 1688 6.923508 CCCAAAATTCTTGTCTTAGGTTTGTC 59.076 38.462 0.00 0.00 0.00 3.18
1678 1689 6.609616 TCCCAAAATTCTTGTCTTAGGTTTGT 59.390 34.615 0.00 0.00 0.00 2.83
1679 1690 6.923508 GTCCCAAAATTCTTGTCTTAGGTTTG 59.076 38.462 0.00 0.00 0.00 2.93
1680 1691 6.238925 CGTCCCAAAATTCTTGTCTTAGGTTT 60.239 38.462 0.00 0.00 0.00 3.27
1681 1692 5.240844 CGTCCCAAAATTCTTGTCTTAGGTT 59.759 40.000 0.00 0.00 0.00 3.50
1682 1693 4.760204 CGTCCCAAAATTCTTGTCTTAGGT 59.240 41.667 0.00 0.00 0.00 3.08
1683 1694 4.156008 CCGTCCCAAAATTCTTGTCTTAGG 59.844 45.833 0.00 0.00 0.00 2.69
1684 1695 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1685 1696 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1686 1697 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1687 1698 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1688 1699 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1689 1700 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1690 1701 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1691 1702 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1692 1703 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1693 1704 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1694 1705 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
1695 1706 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1696 1707 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1697 1708 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1698 1709 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
1699 1710 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
1700 1711 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
1701 1712 1.705873 ATCATGTACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
1702 1713 2.803492 GCAATCATGTACTCCCTCCGTC 60.803 54.545 0.00 0.00 0.00 4.79
1703 1714 1.139058 GCAATCATGTACTCCCTCCGT 59.861 52.381 0.00 0.00 0.00 4.69
1704 1715 1.138859 TGCAATCATGTACTCCCTCCG 59.861 52.381 0.00 0.00 0.00 4.63
1705 1716 2.435805 TCTGCAATCATGTACTCCCTCC 59.564 50.000 0.00 0.00 0.00 4.30
1706 1717 3.827008 TCTGCAATCATGTACTCCCTC 57.173 47.619 0.00 0.00 0.00 4.30
1707 1718 3.521126 AGTTCTGCAATCATGTACTCCCT 59.479 43.478 0.00 0.00 0.00 4.20
1708 1719 3.624861 CAGTTCTGCAATCATGTACTCCC 59.375 47.826 0.00 0.00 0.00 4.30
1709 1720 3.064545 GCAGTTCTGCAATCATGTACTCC 59.935 47.826 18.26 0.00 34.41 3.85
1710 1721 3.686241 TGCAGTTCTGCAATCATGTACTC 59.314 43.478 22.60 0.00 42.40 2.59
1711 1722 3.678289 TGCAGTTCTGCAATCATGTACT 58.322 40.909 22.60 0.00 42.40 2.73
1718 1729 2.675348 GACCTACTGCAGTTCTGCAATC 59.325 50.000 27.06 9.60 44.88 2.67
1728 1739 1.470098 GCCATTGTTGACCTACTGCAG 59.530 52.381 13.48 13.48 0.00 4.41
1880 1891 3.379688 GCCTTCTCTCCAGCCTAAAAATG 59.620 47.826 0.00 0.00 0.00 2.32
1930 1941 6.120507 AGCTTGTTCCACTCTTCTATTTCT 57.879 37.500 0.00 0.00 0.00 2.52
1950 1961 5.396485 ACTTGATATGGAGATCTCTGAGCT 58.604 41.667 21.81 4.13 0.00 4.09
1979 1990 4.389077 CCCTAGTAAACTGACTGAAAAGCG 59.611 45.833 0.00 0.00 0.00 4.68
2112 2123 2.639347 TGGAAAGCAGATCCACAAGAGA 59.361 45.455 1.41 0.00 41.98 3.10
2164 2175 8.290325 AGCTTAGCTACAAATTTTGTTCACTAC 58.710 33.333 19.15 8.45 42.22 2.73
2181 2192 4.279671 GCTCCAGTTCATCTAGCTTAGCTA 59.720 45.833 13.70 13.70 40.44 3.32
2512 2523 7.307632 CGTGATATGAAATTCAGGGACAAGATC 60.308 40.741 1.10 0.00 0.00 2.75
2592 2603 4.952460 ACTAAATGGAAATGCATGATGCC 58.048 39.130 15.70 0.00 44.23 4.40
2660 2671 0.407528 TAACTTCATGGGCCCTTGCA 59.592 50.000 28.88 19.72 40.13 4.08
2906 2917 2.158579 TCCCAAGGAACCCAGTAACAAC 60.159 50.000 0.00 0.00 0.00 3.32
2955 2966 5.650543 ACTAAAAAGTTGCTCCACAAACAG 58.349 37.500 0.00 0.00 40.82 3.16
2956 2967 5.652994 ACTAAAAAGTTGCTCCACAAACA 57.347 34.783 0.00 0.00 40.82 2.83
3210 3222 9.364653 ACTTCTAATAACGAGGGATACAACTAT 57.635 33.333 0.00 0.00 39.74 2.12
3571 3585 1.864711 GAGTGCTACGAAACTGCAACA 59.135 47.619 0.00 0.00 38.50 3.33
3586 3600 8.909671 CAATTCATTTTCTAACTTTCTGAGTGC 58.090 33.333 0.00 0.00 39.00 4.40
3671 3685 4.515191 TCTTTGACTAGCACACCAAATGTC 59.485 41.667 0.00 0.00 40.64 3.06
3747 3761 7.200455 ACAATAACAACAACAACTAAGCCTTC 58.800 34.615 0.00 0.00 0.00 3.46
4019 4034 3.963383 AAAACCTGTTGTAGAAGCACG 57.037 42.857 0.00 0.00 0.00 5.34
4088 4103 8.957466 GCTTTAGGGTTGTATGAATTCTTAACT 58.043 33.333 7.05 2.62 0.00 2.24
4210 4225 1.129437 GACAAAGTCGATGGCTGCTTC 59.871 52.381 0.00 0.00 0.00 3.86
4373 4388 6.652900 TGGATAACGATCAGAATCAACAAACA 59.347 34.615 0.00 0.00 33.27 2.83
4391 4406 8.583810 TCAAGCGTATACAAATAGTGGATAAC 57.416 34.615 3.32 0.00 34.63 1.89
4441 4458 6.015095 CCACACAATCTACAGATATGCCTAGA 60.015 42.308 0.00 0.00 33.73 2.43
4554 4571 3.620374 CAGCTACTTGACACTTAGCATGG 59.380 47.826 14.22 3.29 40.67 3.66
4684 4718 3.889815 AGCTGCTTCATATGCTACCAAA 58.110 40.909 0.00 0.00 33.64 3.28
4709 4743 0.744874 TCGAGAGCGTATCAAAGGGG 59.255 55.000 0.00 0.00 38.98 4.79
4723 4757 3.275143 GACAGTGAAGAGGAGATCGAGA 58.725 50.000 0.00 0.00 0.00 4.04
4797 4831 1.554617 TGGAGAAGATGGACGAATGCA 59.445 47.619 0.00 0.00 0.00 3.96
4882 4916 0.618458 TGGTTACCAGATCAGCACCC 59.382 55.000 0.00 0.00 0.00 4.61
4883 4917 2.084546 GTTGGTTACCAGATCAGCACC 58.915 52.381 3.65 0.00 33.81 5.01
4925 4959 0.823769 TGTCTGCGACTGTCACCTCT 60.824 55.000 8.73 0.00 33.15 3.69
4927 4961 0.464036 TTTGTCTGCGACTGTCACCT 59.536 50.000 8.73 0.00 33.15 4.00
4929 4963 1.286501 TGTTTGTCTGCGACTGTCAC 58.713 50.000 8.73 0.00 33.15 3.67
4930 4964 2.135139 GATGTTTGTCTGCGACTGTCA 58.865 47.619 8.73 6.53 33.15 3.58
4964 4998 1.069358 GTGATGTTTCCCCCGCAAAAA 59.931 47.619 0.00 0.00 0.00 1.94
4965 4999 0.676736 GTGATGTTTCCCCCGCAAAA 59.323 50.000 0.00 0.00 0.00 2.44
4966 5000 0.468214 TGTGATGTTTCCCCCGCAAA 60.468 50.000 0.00 0.00 0.00 3.68
4967 5001 1.151679 TGTGATGTTTCCCCCGCAA 59.848 52.632 0.00 0.00 0.00 4.85
4968 5002 1.602323 GTGTGATGTTTCCCCCGCA 60.602 57.895 0.00 0.00 0.00 5.69
4969 5003 0.035820 TAGTGTGATGTTTCCCCCGC 60.036 55.000 0.00 0.00 0.00 6.13
4970 5004 2.081462 GTTAGTGTGATGTTTCCCCCG 58.919 52.381 0.00 0.00 0.00 5.73
4971 5005 2.224917 TGGTTAGTGTGATGTTTCCCCC 60.225 50.000 0.00 0.00 0.00 5.40
4972 5006 3.149005 TGGTTAGTGTGATGTTTCCCC 57.851 47.619 0.00 0.00 0.00 4.81
4973 5007 8.691661 AATATATGGTTAGTGTGATGTTTCCC 57.308 34.615 0.00 0.00 0.00 3.97
4974 5008 9.561069 AGAATATATGGTTAGTGTGATGTTTCC 57.439 33.333 0.00 0.00 0.00 3.13
4978 5012 9.935241 GATGAGAATATATGGTTAGTGTGATGT 57.065 33.333 0.00 0.00 0.00 3.06
4981 5015 9.367160 TGAGATGAGAATATATGGTTAGTGTGA 57.633 33.333 0.00 0.00 0.00 3.58
4982 5016 9.987272 TTGAGATGAGAATATATGGTTAGTGTG 57.013 33.333 0.00 0.00 0.00 3.82
4984 5018 9.650539 CCTTGAGATGAGAATATATGGTTAGTG 57.349 37.037 0.00 0.00 0.00 2.74
4985 5019 8.317679 GCCTTGAGATGAGAATATATGGTTAGT 58.682 37.037 0.00 0.00 0.00 2.24
4986 5020 7.768120 GGCCTTGAGATGAGAATATATGGTTAG 59.232 40.741 0.00 0.00 0.00 2.34
4987 5021 7.459125 AGGCCTTGAGATGAGAATATATGGTTA 59.541 37.037 0.00 0.00 0.00 2.85
4988 5022 6.274200 AGGCCTTGAGATGAGAATATATGGTT 59.726 38.462 0.00 0.00 0.00 3.67
4989 5023 5.789575 AGGCCTTGAGATGAGAATATATGGT 59.210 40.000 0.00 0.00 0.00 3.55
4990 5024 6.310764 AGGCCTTGAGATGAGAATATATGG 57.689 41.667 0.00 0.00 0.00 2.74
4991 5025 6.822676 GGAAGGCCTTGAGATGAGAATATATG 59.177 42.308 26.25 0.00 0.00 1.78
5042 5076 1.485397 CTTGCGAGATCATCTGGACG 58.515 55.000 0.00 0.00 0.00 4.79
5124 5158 4.223032 AGACACCGTGGATAGATGTTCTTT 59.777 41.667 3.03 0.00 0.00 2.52
5150 5184 5.227805 CGCCAACAATGATTTAATTCGACAG 59.772 40.000 0.00 0.00 0.00 3.51
5151 5185 5.092105 CGCCAACAATGATTTAATTCGACA 58.908 37.500 0.00 0.00 0.00 4.35
5152 5186 4.027702 GCGCCAACAATGATTTAATTCGAC 60.028 41.667 0.00 0.00 0.00 4.20
5153 5187 4.101942 GCGCCAACAATGATTTAATTCGA 58.898 39.130 0.00 0.00 0.00 3.71
5154 5188 4.027458 CAGCGCCAACAATGATTTAATTCG 60.027 41.667 2.29 0.00 0.00 3.34
5157 5191 3.189285 GCAGCGCCAACAATGATTTAAT 58.811 40.909 2.29 0.00 0.00 1.40
5176 5210 1.315981 TGGCAACGTTCACAAAGGCA 61.316 50.000 0.00 1.44 42.51 4.75
5178 5212 0.030638 CCTGGCAACGTTCACAAAGG 59.969 55.000 0.00 1.34 42.51 3.11
5185 5219 0.951558 ATGTTCACCTGGCAACGTTC 59.048 50.000 0.00 0.00 42.51 3.95
5187 5221 0.465460 ACATGTTCACCTGGCAACGT 60.465 50.000 0.00 0.00 42.51 3.99
5189 5223 0.598065 GGACATGTTCACCTGGCAAC 59.402 55.000 0.00 0.00 0.00 4.17
5214 5248 2.265739 GCCTCGCTGTCATGGACA 59.734 61.111 0.00 0.00 40.50 4.02
5220 5254 3.921767 CTGCTTCGCCTCGCTGTCA 62.922 63.158 0.00 0.00 0.00 3.58
5274 5308 2.137523 CAATCATCGCCATCGTCATCA 58.862 47.619 0.00 0.00 36.96 3.07
5279 5325 0.659427 CAAGCAATCATCGCCATCGT 59.341 50.000 0.00 0.00 36.96 3.73
5293 5339 1.739466 GTCGAATTCTGCCATCAAGCA 59.261 47.619 3.52 0.00 41.46 3.91
5296 5342 2.270923 CTCGTCGAATTCTGCCATCAA 58.729 47.619 3.52 0.00 0.00 2.57
5376 5445 1.600636 CAGCAGCGGTTTTCCCAGA 60.601 57.895 0.00 0.00 36.42 3.86
5381 5450 1.005032 GTTTTTGCAGCAGCGGTTTTC 60.005 47.619 0.00 0.00 46.23 2.29
5400 5470 3.220658 CCCGGCCGTTGTTTTGGT 61.221 61.111 26.12 0.00 0.00 3.67
5401 5471 3.220658 ACCCGGCCGTTGTTTTGG 61.221 61.111 26.12 18.41 0.00 3.28
5415 5485 1.692519 ACAGTCTACAAGTCCACACCC 59.307 52.381 0.00 0.00 0.00 4.61
5494 5566 3.628942 TGCTTCGATACCACGTAGTACAT 59.371 43.478 0.00 0.00 41.61 2.29
5495 5567 3.009026 TGCTTCGATACCACGTAGTACA 58.991 45.455 0.00 0.00 41.61 2.90
5496 5568 3.680642 TGCTTCGATACCACGTAGTAC 57.319 47.619 0.00 0.00 41.61 2.73
5497 5569 3.549423 GCATGCTTCGATACCACGTAGTA 60.549 47.826 11.37 0.00 41.61 1.82
5499 5571 1.787155 GCATGCTTCGATACCACGTAG 59.213 52.381 11.37 0.00 34.69 3.51
5500 5572 1.135333 TGCATGCTTCGATACCACGTA 59.865 47.619 20.33 0.00 34.70 3.57
5501 5573 0.108377 TGCATGCTTCGATACCACGT 60.108 50.000 20.33 0.00 34.70 4.49
5502 5574 0.578683 CTGCATGCTTCGATACCACG 59.421 55.000 20.33 0.00 0.00 4.94
5503 5575 0.305922 GCTGCATGCTTCGATACCAC 59.694 55.000 20.33 0.00 38.95 4.16
5504 5576 1.153597 CGCTGCATGCTTCGATACCA 61.154 55.000 20.33 0.00 40.11 3.25
5505 5577 1.154205 ACGCTGCATGCTTCGATACC 61.154 55.000 29.02 6.74 40.11 2.73
5506 5578 1.190323 GTACGCTGCATGCTTCGATAC 59.810 52.381 29.02 22.75 40.11 2.24
5507 5579 1.202359 TGTACGCTGCATGCTTCGATA 60.202 47.619 29.02 18.10 40.11 2.92
5508 5580 0.460109 TGTACGCTGCATGCTTCGAT 60.460 50.000 29.02 18.84 40.11 3.59
5509 5581 1.078201 CTGTACGCTGCATGCTTCGA 61.078 55.000 29.02 15.41 40.11 3.71
5510 5582 1.078201 TCTGTACGCTGCATGCTTCG 61.078 55.000 20.33 22.26 40.11 3.79
5511 5583 1.078709 TTCTGTACGCTGCATGCTTC 58.921 50.000 20.33 9.38 40.11 3.86
5512 5584 1.399440 CATTCTGTACGCTGCATGCTT 59.601 47.619 20.33 3.09 40.11 3.91
5513 5585 1.012086 CATTCTGTACGCTGCATGCT 58.988 50.000 20.33 0.00 40.11 3.79
5514 5586 0.729116 ACATTCTGTACGCTGCATGC 59.271 50.000 11.82 11.82 38.57 4.06
5515 5587 1.005662 CGACATTCTGTACGCTGCATG 60.006 52.381 0.00 0.00 0.00 4.06
5516 5588 1.280982 CGACATTCTGTACGCTGCAT 58.719 50.000 0.00 0.00 0.00 3.96
5517 5589 0.735978 CCGACATTCTGTACGCTGCA 60.736 55.000 0.00 0.00 0.00 4.41
5518 5590 0.736325 ACCGACATTCTGTACGCTGC 60.736 55.000 0.00 0.00 0.00 5.25
5519 5591 1.269166 GACCGACATTCTGTACGCTG 58.731 55.000 0.00 0.00 0.00 5.18
5520 5592 0.179171 CGACCGACATTCTGTACGCT 60.179 55.000 0.00 0.00 0.00 5.07
5521 5593 0.455633 ACGACCGACATTCTGTACGC 60.456 55.000 0.00 0.00 0.00 4.42
5522 5594 1.256652 CACGACCGACATTCTGTACG 58.743 55.000 0.00 0.00 0.00 3.67
5523 5595 1.625616 CCACGACCGACATTCTGTAC 58.374 55.000 0.00 0.00 0.00 2.90
5524 5596 0.108992 GCCACGACCGACATTCTGTA 60.109 55.000 0.00 0.00 0.00 2.74
5525 5597 1.374252 GCCACGACCGACATTCTGT 60.374 57.895 0.00 0.00 0.00 3.41
5526 5598 1.078759 GAGCCACGACCGACATTCTG 61.079 60.000 0.00 0.00 0.00 3.02
5527 5599 1.215647 GAGCCACGACCGACATTCT 59.784 57.895 0.00 0.00 0.00 2.40
5528 5600 2.158959 CGAGCCACGACCGACATTC 61.159 63.158 0.00 0.00 45.77 2.67
5529 5601 2.126071 CGAGCCACGACCGACATT 60.126 61.111 0.00 0.00 45.77 2.71
5530 5602 3.371063 ACGAGCCACGACCGACAT 61.371 61.111 7.86 0.00 45.77 3.06
5531 5603 4.337060 CACGAGCCACGACCGACA 62.337 66.667 7.86 0.00 45.77 4.35
5532 5604 3.948086 CTCACGAGCCACGACCGAC 62.948 68.421 7.86 0.00 45.77 4.79
5533 5605 3.733960 CTCACGAGCCACGACCGA 61.734 66.667 7.86 1.41 45.77 4.69
5534 5606 3.669036 CTCTCACGAGCCACGACCG 62.669 68.421 7.86 0.00 45.77 4.79
5535 5607 2.179517 CTCTCACGAGCCACGACC 59.820 66.667 7.86 0.00 45.77 4.79
5536 5608 2.179517 CCTCTCACGAGCCACGAC 59.820 66.667 7.86 0.00 45.77 4.34
5537 5609 2.814913 TAGCCTCTCACGAGCCACGA 62.815 60.000 7.86 0.00 45.77 4.35
5539 5611 1.435515 CTAGCCTCTCACGAGCCAC 59.564 63.158 0.00 0.00 35.90 5.01
5540 5612 2.418910 GCTAGCCTCTCACGAGCCA 61.419 63.158 2.29 0.00 35.90 4.75
5541 5613 2.415426 GCTAGCCTCTCACGAGCC 59.585 66.667 2.29 0.00 35.90 4.70
5542 5614 2.025441 CGCTAGCCTCTCACGAGC 59.975 66.667 9.66 0.00 35.90 5.03
5543 5615 1.658686 AACCGCTAGCCTCTCACGAG 61.659 60.000 9.66 0.00 37.01 4.18
5544 5616 1.248785 AAACCGCTAGCCTCTCACGA 61.249 55.000 9.66 0.00 0.00 4.35
5545 5617 1.078759 CAAACCGCTAGCCTCTCACG 61.079 60.000 9.66 0.00 0.00 4.35
5546 5618 0.246635 TCAAACCGCTAGCCTCTCAC 59.753 55.000 9.66 0.00 0.00 3.51
5547 5619 0.532573 CTCAAACCGCTAGCCTCTCA 59.467 55.000 9.66 0.00 0.00 3.27
5548 5620 0.533032 ACTCAAACCGCTAGCCTCTC 59.467 55.000 9.66 0.00 0.00 3.20
5549 5621 0.977395 AACTCAAACCGCTAGCCTCT 59.023 50.000 9.66 0.00 0.00 3.69
5550 5622 1.464997 CAAACTCAAACCGCTAGCCTC 59.535 52.381 9.66 0.00 0.00 4.70
5551 5623 1.523758 CAAACTCAAACCGCTAGCCT 58.476 50.000 9.66 0.00 0.00 4.58
5552 5624 0.521735 CCAAACTCAAACCGCTAGCC 59.478 55.000 9.66 0.00 0.00 3.93
5553 5625 0.109735 GCCAAACTCAAACCGCTAGC 60.110 55.000 4.06 4.06 0.00 3.42
5554 5626 1.234821 TGCCAAACTCAAACCGCTAG 58.765 50.000 0.00 0.00 0.00 3.42
5555 5627 1.539388 CATGCCAAACTCAAACCGCTA 59.461 47.619 0.00 0.00 0.00 4.26
5556 5628 0.314935 CATGCCAAACTCAAACCGCT 59.685 50.000 0.00 0.00 0.00 5.52
5557 5629 0.031994 ACATGCCAAACTCAAACCGC 59.968 50.000 0.00 0.00 0.00 5.68
5558 5630 2.552315 AGTACATGCCAAACTCAAACCG 59.448 45.455 0.00 0.00 0.00 4.44
5559 5631 3.057526 GGAGTACATGCCAAACTCAAACC 60.058 47.826 15.69 1.31 41.15 3.27
5560 5632 3.057526 GGGAGTACATGCCAAACTCAAAC 60.058 47.826 15.69 6.01 41.15 2.93
5561 5633 3.153919 GGGAGTACATGCCAAACTCAAA 58.846 45.455 15.69 0.00 41.15 2.69
5562 5634 2.375174 AGGGAGTACATGCCAAACTCAA 59.625 45.455 15.69 0.00 43.31 3.02
5563 5635 1.985159 AGGGAGTACATGCCAAACTCA 59.015 47.619 15.69 0.00 43.31 3.41
5564 5636 2.633488 GAGGGAGTACATGCCAAACTC 58.367 52.381 0.00 8.74 43.31 3.01
5565 5637 1.282157 GGAGGGAGTACATGCCAAACT 59.718 52.381 0.00 0.00 43.31 2.66
5566 5638 1.751437 GGAGGGAGTACATGCCAAAC 58.249 55.000 0.00 0.00 43.31 2.93
5567 5639 0.251916 CGGAGGGAGTACATGCCAAA 59.748 55.000 0.00 0.00 43.31 3.28
5568 5640 0.907704 ACGGAGGGAGTACATGCCAA 60.908 55.000 0.00 0.00 43.31 4.52
5569 5641 0.907704 AACGGAGGGAGTACATGCCA 60.908 55.000 0.00 0.00 43.31 4.92
5570 5642 0.179081 GAACGGAGGGAGTACATGCC 60.179 60.000 0.00 0.00 40.48 4.40
5571 5643 0.179081 GGAACGGAGGGAGTACATGC 60.179 60.000 0.00 0.00 0.00 4.06
5572 5644 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
5573 5645 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
5574 5646 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
5575 5647 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
5576 5648 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5577 5649 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5578 5650 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5579 5651 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5580 5652 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5581 5653 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5582 5654 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5643 5715 9.236006 AGTGAATCTACACTCTAAAATGCATTT 57.764 29.630 18.99 18.99 46.36 2.32
5644 5716 8.798859 AGTGAATCTACACTCTAAAATGCATT 57.201 30.769 5.99 5.99 46.36 3.56
5665 5737 8.726988 GGACTACATACAAAGCAAAATAAGTGA 58.273 33.333 0.00 0.00 0.00 3.41
5666 5738 8.511321 TGGACTACATACAAAGCAAAATAAGTG 58.489 33.333 0.00 0.00 0.00 3.16
5667 5739 8.630054 TGGACTACATACAAAGCAAAATAAGT 57.370 30.769 0.00 0.00 0.00 2.24
5670 5742 9.899661 ACTATGGACTACATACAAAGCAAAATA 57.100 29.630 0.00 0.00 41.03 1.40
5671 5743 8.677300 CACTATGGACTACATACAAAGCAAAAT 58.323 33.333 0.00 0.00 41.03 1.82
5672 5744 7.120579 CCACTATGGACTACATACAAAGCAAAA 59.879 37.037 0.00 0.00 40.96 2.44
5673 5745 6.597672 CCACTATGGACTACATACAAAGCAAA 59.402 38.462 0.00 0.00 40.96 3.68
5674 5746 6.070481 TCCACTATGGACTACATACAAAGCAA 60.070 38.462 0.00 0.00 42.67 3.91
5675 5747 5.423931 TCCACTATGGACTACATACAAAGCA 59.576 40.000 0.00 0.00 42.67 3.91
5676 5748 5.914033 TCCACTATGGACTACATACAAAGC 58.086 41.667 0.00 0.00 42.67 3.51
5689 5761 6.897966 AGTCTTTGTAGAGATTCCACTATGGA 59.102 38.462 0.00 0.00 46.61 3.41
5690 5762 7.118496 AGTCTTTGTAGAGATTCCACTATGG 57.882 40.000 0.00 0.00 39.43 2.74
5706 5778 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5707 5779 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5708 5780 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5709 5781 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5710 5782 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5711 5783 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5712 5784 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5713 5785 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5714 5786 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
5715 5787 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
5716 5788 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5717 5789 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5718 5790 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5719 5791 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5720 5792 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5721 5793 3.435601 GGTATGTACTCCCTCCGTTCCTA 60.436 52.174 0.00 0.00 0.00 2.94
5722 5794 2.664015 GTATGTACTCCCTCCGTTCCT 58.336 52.381 0.00 0.00 0.00 3.36
5723 5795 1.685517 GGTATGTACTCCCTCCGTTCC 59.314 57.143 0.00 0.00 0.00 3.62
5724 5796 2.381911 TGGTATGTACTCCCTCCGTTC 58.618 52.381 0.00 0.00 0.00 3.95
5725 5797 2.537633 TGGTATGTACTCCCTCCGTT 57.462 50.000 0.00 0.00 0.00 4.44
5726 5798 2.595238 GATGGTATGTACTCCCTCCGT 58.405 52.381 0.00 0.00 0.00 4.69
5727 5799 1.893801 GGATGGTATGTACTCCCTCCG 59.106 57.143 0.00 0.00 31.14 4.63
5728 5800 2.258109 GGGATGGTATGTACTCCCTCC 58.742 57.143 8.10 11.31 43.45 4.30
5729 5801 2.258109 GGGGATGGTATGTACTCCCTC 58.742 57.143 13.67 7.12 45.65 4.30
5730 5802 1.482553 CGGGGATGGTATGTACTCCCT 60.483 57.143 13.67 0.00 45.65 4.20
5731 5803 0.974383 CGGGGATGGTATGTACTCCC 59.026 60.000 7.01 7.01 45.64 4.30
5732 5804 2.005370 TCGGGGATGGTATGTACTCC 57.995 55.000 0.00 0.00 0.00 3.85
5733 5805 3.493873 GGTTTCGGGGATGGTATGTACTC 60.494 52.174 0.00 0.00 0.00 2.59
5734 5806 2.436911 GGTTTCGGGGATGGTATGTACT 59.563 50.000 0.00 0.00 0.00 2.73
5735 5807 2.436911 AGGTTTCGGGGATGGTATGTAC 59.563 50.000 0.00 0.00 0.00 2.90
5736 5808 2.766736 AGGTTTCGGGGATGGTATGTA 58.233 47.619 0.00 0.00 0.00 2.29
5737 5809 1.591768 AGGTTTCGGGGATGGTATGT 58.408 50.000 0.00 0.00 0.00 2.29
5738 5810 3.496160 CCTTAGGTTTCGGGGATGGTATG 60.496 52.174 0.00 0.00 0.00 2.39
5739 5811 2.709397 CCTTAGGTTTCGGGGATGGTAT 59.291 50.000 0.00 0.00 0.00 2.73
5740 5812 2.121129 CCTTAGGTTTCGGGGATGGTA 58.879 52.381 0.00 0.00 0.00 3.25
5741 5813 0.916809 CCTTAGGTTTCGGGGATGGT 59.083 55.000 0.00 0.00 0.00 3.55
5742 5814 0.182775 CCCTTAGGTTTCGGGGATGG 59.817 60.000 0.00 0.00 41.25 3.51
5743 5815 0.465642 GCCCTTAGGTTTCGGGGATG 60.466 60.000 0.00 0.00 41.25 3.51
5763 5835 1.550130 CCTAAGTCGCCACCAAGGGA 61.550 60.000 0.00 0.00 38.09 4.20
5764 5836 1.078426 CCTAAGTCGCCACCAAGGG 60.078 63.158 0.00 0.00 38.09 3.95
5767 5839 0.035739 GAACCCTAAGTCGCCACCAA 59.964 55.000 0.00 0.00 0.00 3.67
5834 5907 4.136511 TCCGCGTCGCCATGCTTA 62.137 61.111 12.44 0.00 31.59 3.09
5840 5913 4.201679 CCATAGTCCGCGTCGCCA 62.202 66.667 12.44 0.00 0.00 5.69
5934 6016 0.252881 AGGAGATGTCCAGCTTCCCA 60.253 55.000 12.14 0.00 46.80 4.37
5953 6035 1.896220 AGCGATGTTGCTTCTTCCAA 58.104 45.000 0.00 0.00 44.46 3.53
5954 6036 3.631453 AGCGATGTTGCTTCTTCCA 57.369 47.368 0.00 0.00 44.46 3.53
5980 6062 0.457853 CCACCGTCGACGTGATCATT 60.458 55.000 33.49 8.62 37.74 2.57
6018 6100 1.137872 CGGTGCAGGATCTTTCTAGCT 59.862 52.381 0.00 0.00 0.00 3.32
6022 6104 0.036732 TTGCGGTGCAGGATCTTTCT 59.963 50.000 0.00 0.00 40.61 2.52
6142 6230 3.100658 TCACGATCTCTCTAGGTCTCG 57.899 52.381 0.00 0.00 29.89 4.04
6181 6269 2.455557 TGTTTATTCAGGTGCCATGGG 58.544 47.619 15.13 0.00 0.00 4.00
6184 6272 2.099592 CGCATGTTTATTCAGGTGCCAT 59.900 45.455 0.00 0.00 0.00 4.40
6237 6325 4.090761 TCAAAGTTGACTTCATCAGGCT 57.909 40.909 0.00 0.00 38.99 4.58
6253 6341 1.605710 CACACCTGGAGCTTGTCAAAG 59.394 52.381 0.00 0.00 36.41 2.77
6286 6374 3.449018 TCTCTCAGATTGTAGGCAGGTTC 59.551 47.826 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.