Multiple sequence alignment - TraesCS3B01G475500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G475500 chr3B 100.000 4475 0 0 1 4475 724003308 723998834 0.000000e+00 8264.0
1 TraesCS3B01G475500 chr3B 89.868 227 21 1 1 225 797633764 797633990 1.570000e-74 291.0
2 TraesCS3B01G475500 chr3A 96.255 3204 96 11 793 3981 683531412 683528218 0.000000e+00 5230.0
3 TraesCS3B01G475500 chr3A 88.361 421 21 7 4074 4475 683528073 683527662 8.710000e-132 481.0
4 TraesCS3B01G475500 chr3A 83.005 406 46 15 4074 4474 683524598 683524211 3.310000e-91 346.0
5 TraesCS3B01G475500 chr3A 85.205 365 23 11 3619 3981 683525074 683524739 3.310000e-91 346.0
6 TraesCS3B01G475500 chr3A 81.627 381 44 13 4111 4475 683526377 683526007 4.380000e-75 292.0
7 TraesCS3B01G475500 chr3A 76.699 309 56 13 3573 3873 683527859 683527559 1.670000e-34 158.0
8 TraesCS3B01G475500 chr3A 95.890 73 3 0 4003 4075 683528233 683528161 7.860000e-23 119.0
9 TraesCS3B01G475500 chr3A 91.781 73 3 1 4003 4075 683524754 683524685 1.020000e-16 99.0
10 TraesCS3B01G475500 chr3D 95.970 3226 91 18 771 3981 546820190 546816989 0.000000e+00 5201.0
11 TraesCS3B01G475500 chr3D 88.743 533 44 11 227 750 546822711 546822186 4.880000e-179 638.0
12 TraesCS3B01G475500 chr3D 89.549 421 15 12 4074 4475 546816844 546816434 1.440000e-139 507.0
13 TraesCS3B01G475500 chr3D 77.097 310 55 14 3573 3873 546816632 546816330 9.960000e-37 165.0
14 TraesCS3B01G475500 chr3D 95.890 73 3 0 4003 4075 546817004 546816932 7.860000e-23 119.0
15 TraesCS3B01G475500 chr2B 91.928 223 17 1 1 222 675380593 675380815 1.210000e-80 311.0
16 TraesCS3B01G475500 chr5D 85.022 227 32 2 1 225 193641421 193641647 3.480000e-56 230.0
17 TraesCS3B01G475500 chr7A 83.772 228 33 4 1 225 103021042 103021268 3.510000e-51 213.0
18 TraesCS3B01G475500 chr6D 85.714 98 14 0 1 98 6755696 6755793 2.200000e-18 104.0
19 TraesCS3B01G475500 chr1B 90.566 53 5 0 173 225 458268940 458268992 2.230000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G475500 chr3B 723998834 724003308 4474 True 8264.000 8264 100.000000 1 4475 1 chr3B.!!$R1 4474
1 TraesCS3B01G475500 chr3A 683524211 683531412 7201 True 883.875 5230 87.352875 793 4475 8 chr3A.!!$R1 3682
2 TraesCS3B01G475500 chr3D 546816330 546822711 6381 True 1326.000 5201 89.449800 227 4475 5 chr3D.!!$R1 4248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.036164 ATGCCTGTTGCTAACGACCA 59.964 50.0 0.00 0.0 42.00 4.02 F
1189 3184 0.100503 GCGGGGATCAAATTCGGTTG 59.899 55.0 0.00 0.0 0.00 3.77 F
1853 3848 0.693049 AGGACCGACCATTGCTTTCT 59.307 50.0 0.00 0.0 42.04 2.52 F
2772 4767 0.590195 CTATGGCGCAATTCTCCAGC 59.410 55.0 10.83 0.0 32.24 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1531 3526 0.396811 AGCACCTTGTAGGCTTCGTT 59.603 50.0 0.0 0.0 39.63 3.85 R
2463 4458 0.512952 GCGCAACTGTACAACCTGAG 59.487 55.0 0.3 0.0 0.00 3.35 R
2994 4989 0.749454 GCAAGCCATCTTCGACCCAT 60.749 55.0 0.0 0.0 0.00 4.00 R
4000 6004 0.853530 AGCCCCAACTGAGAACCTTT 59.146 50.0 0.0 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.706140 CCTGCTCGCGGTAATCAC 58.294 61.111 6.13 0.00 0.00 3.06
18 19 2.230940 CCTGCTCGCGGTAATCACG 61.231 63.158 6.13 0.00 0.00 4.35
19 20 1.516386 CTGCTCGCGGTAATCACGT 60.516 57.895 6.13 0.00 0.00 4.49
20 21 0.248336 CTGCTCGCGGTAATCACGTA 60.248 55.000 6.13 0.00 0.00 3.57
21 22 0.382873 TGCTCGCGGTAATCACGTAT 59.617 50.000 6.13 0.00 0.00 3.06
22 23 1.050767 GCTCGCGGTAATCACGTATC 58.949 55.000 6.13 0.00 0.00 2.24
23 24 1.334779 GCTCGCGGTAATCACGTATCT 60.335 52.381 6.13 0.00 0.00 1.98
24 25 2.096069 GCTCGCGGTAATCACGTATCTA 60.096 50.000 6.13 0.00 0.00 1.98
25 26 3.477122 CTCGCGGTAATCACGTATCTAC 58.523 50.000 6.13 0.00 0.00 2.59
26 27 3.133691 TCGCGGTAATCACGTATCTACT 58.866 45.455 6.13 0.00 0.00 2.57
27 28 3.059393 TCGCGGTAATCACGTATCTACTG 60.059 47.826 6.13 0.00 0.00 2.74
28 29 3.303593 CGCGGTAATCACGTATCTACTGT 60.304 47.826 0.00 0.00 0.00 3.55
29 30 4.084380 CGCGGTAATCACGTATCTACTGTA 60.084 45.833 0.00 0.00 0.00 2.74
30 31 5.390251 CGCGGTAATCACGTATCTACTGTAT 60.390 44.000 0.00 0.00 0.00 2.29
31 32 6.376978 GCGGTAATCACGTATCTACTGTATT 58.623 40.000 0.00 0.00 0.00 1.89
32 33 7.521529 GCGGTAATCACGTATCTACTGTATTA 58.478 38.462 0.00 0.00 0.00 0.98
33 34 7.691463 GCGGTAATCACGTATCTACTGTATTAG 59.309 40.741 0.00 0.00 0.00 1.73
34 35 7.691463 CGGTAATCACGTATCTACTGTATTAGC 59.309 40.741 0.00 0.00 0.00 3.09
35 36 7.967303 GGTAATCACGTATCTACTGTATTAGCC 59.033 40.741 0.00 0.00 0.00 3.93
36 37 5.954296 TCACGTATCTACTGTATTAGCCC 57.046 43.478 0.00 0.00 0.00 5.19
37 38 5.379187 TCACGTATCTACTGTATTAGCCCA 58.621 41.667 0.00 0.00 0.00 5.36
38 39 5.829391 TCACGTATCTACTGTATTAGCCCAA 59.171 40.000 0.00 0.00 0.00 4.12
39 40 6.492429 TCACGTATCTACTGTATTAGCCCAAT 59.508 38.462 0.00 0.00 0.00 3.16
40 41 7.014905 TCACGTATCTACTGTATTAGCCCAATT 59.985 37.037 0.00 0.00 0.00 2.32
41 42 7.328737 CACGTATCTACTGTATTAGCCCAATTC 59.671 40.741 0.00 0.00 0.00 2.17
42 43 6.812160 CGTATCTACTGTATTAGCCCAATTCC 59.188 42.308 0.00 0.00 0.00 3.01
43 44 6.763715 ATCTACTGTATTAGCCCAATTCCA 57.236 37.500 0.00 0.00 0.00 3.53
44 45 6.569127 TCTACTGTATTAGCCCAATTCCAA 57.431 37.500 0.00 0.00 0.00 3.53
45 46 6.964464 TCTACTGTATTAGCCCAATTCCAAA 58.036 36.000 0.00 0.00 0.00 3.28
46 47 5.914898 ACTGTATTAGCCCAATTCCAAAC 57.085 39.130 0.00 0.00 0.00 2.93
47 48 5.329399 ACTGTATTAGCCCAATTCCAAACA 58.671 37.500 0.00 0.00 0.00 2.83
48 49 5.418840 ACTGTATTAGCCCAATTCCAAACAG 59.581 40.000 0.00 0.00 35.60 3.16
49 50 5.575157 TGTATTAGCCCAATTCCAAACAGA 58.425 37.500 0.00 0.00 0.00 3.41
50 51 6.013379 TGTATTAGCCCAATTCCAAACAGAA 58.987 36.000 0.00 0.00 0.00 3.02
51 52 4.864704 TTAGCCCAATTCCAAACAGAAC 57.135 40.909 0.00 0.00 0.00 3.01
52 53 2.676748 AGCCCAATTCCAAACAGAACA 58.323 42.857 0.00 0.00 0.00 3.18
53 54 3.242011 AGCCCAATTCCAAACAGAACAT 58.758 40.909 0.00 0.00 0.00 2.71
54 55 3.007182 AGCCCAATTCCAAACAGAACATG 59.993 43.478 0.00 0.00 0.00 3.21
55 56 3.244181 GCCCAATTCCAAACAGAACATGT 60.244 43.478 0.00 0.00 46.97 3.21
56 57 4.309099 CCCAATTCCAAACAGAACATGTG 58.691 43.478 0.00 0.00 43.00 3.21
57 58 4.309099 CCAATTCCAAACAGAACATGTGG 58.691 43.478 0.00 0.00 43.00 4.17
58 59 4.202243 CCAATTCCAAACAGAACATGTGGT 60.202 41.667 0.00 0.00 43.00 4.16
59 60 5.358922 CAATTCCAAACAGAACATGTGGTT 58.641 37.500 0.00 1.79 43.00 3.67
60 61 4.383850 TTCCAAACAGAACATGTGGTTG 57.616 40.909 0.00 1.99 43.00 3.77
61 62 2.692557 TCCAAACAGAACATGTGGTTGG 59.307 45.455 20.43 20.43 45.46 3.77
62 63 2.472816 CAAACAGAACATGTGGTTGGC 58.527 47.619 0.00 0.00 43.00 4.52
63 64 2.071778 AACAGAACATGTGGTTGGCT 57.928 45.000 0.00 0.00 43.00 4.75
64 65 1.321474 ACAGAACATGTGGTTGGCTG 58.679 50.000 0.00 3.56 41.91 4.85
65 66 1.133823 ACAGAACATGTGGTTGGCTGA 60.134 47.619 0.00 0.00 41.91 4.26
66 67 1.538512 CAGAACATGTGGTTGGCTGAG 59.461 52.381 0.00 0.00 40.63 3.35
67 68 1.421268 AGAACATGTGGTTGGCTGAGA 59.579 47.619 0.00 0.00 40.63 3.27
68 69 2.040813 AGAACATGTGGTTGGCTGAGAT 59.959 45.455 0.00 0.00 40.63 2.75
69 70 1.830279 ACATGTGGTTGGCTGAGATG 58.170 50.000 0.00 0.00 0.00 2.90
70 71 1.100510 CATGTGGTTGGCTGAGATGG 58.899 55.000 0.00 0.00 0.00 3.51
71 72 0.700564 ATGTGGTTGGCTGAGATGGT 59.299 50.000 0.00 0.00 0.00 3.55
72 73 0.036732 TGTGGTTGGCTGAGATGGTC 59.963 55.000 0.00 0.00 0.00 4.02
73 74 0.036732 GTGGTTGGCTGAGATGGTCA 59.963 55.000 0.00 0.00 0.00 4.02
74 75 0.036732 TGGTTGGCTGAGATGGTCAC 59.963 55.000 0.00 0.00 0.00 3.67
75 76 0.678048 GGTTGGCTGAGATGGTCACC 60.678 60.000 0.00 0.00 0.00 4.02
76 77 0.036732 GTTGGCTGAGATGGTCACCA 59.963 55.000 0.00 0.00 35.67 4.17
77 78 0.325933 TTGGCTGAGATGGTCACCAG 59.674 55.000 1.19 0.00 37.53 4.00
78 79 1.222936 GGCTGAGATGGTCACCAGG 59.777 63.158 1.19 0.00 36.75 4.45
79 80 1.557269 GGCTGAGATGGTCACCAGGT 61.557 60.000 1.19 0.00 36.75 4.00
80 81 1.195115 GCTGAGATGGTCACCAGGTA 58.805 55.000 1.19 0.00 36.75 3.08
81 82 1.765314 GCTGAGATGGTCACCAGGTAT 59.235 52.381 1.19 0.00 36.75 2.73
82 83 2.965831 GCTGAGATGGTCACCAGGTATA 59.034 50.000 1.19 0.00 36.75 1.47
83 84 3.006323 GCTGAGATGGTCACCAGGTATAG 59.994 52.174 1.19 0.00 36.75 1.31
84 85 4.219115 CTGAGATGGTCACCAGGTATAGT 58.781 47.826 1.19 0.00 36.75 2.12
85 86 5.386060 CTGAGATGGTCACCAGGTATAGTA 58.614 45.833 1.19 0.00 36.75 1.82
86 87 5.773091 TGAGATGGTCACCAGGTATAGTAA 58.227 41.667 1.19 0.00 36.75 2.24
87 88 6.199376 TGAGATGGTCACCAGGTATAGTAAA 58.801 40.000 1.19 0.00 36.75 2.01
88 89 6.670464 TGAGATGGTCACCAGGTATAGTAAAA 59.330 38.462 1.19 0.00 36.75 1.52
89 90 6.885922 AGATGGTCACCAGGTATAGTAAAAC 58.114 40.000 1.19 0.00 36.75 2.43
90 91 6.672657 AGATGGTCACCAGGTATAGTAAAACT 59.327 38.462 1.19 0.00 36.75 2.66
91 92 6.290294 TGGTCACCAGGTATAGTAAAACTC 57.710 41.667 0.00 0.00 0.00 3.01
92 93 5.781306 TGGTCACCAGGTATAGTAAAACTCA 59.219 40.000 0.00 0.00 0.00 3.41
93 94 6.070995 TGGTCACCAGGTATAGTAAAACTCAG 60.071 42.308 0.00 0.00 0.00 3.35
94 95 6.154021 GGTCACCAGGTATAGTAAAACTCAGA 59.846 42.308 0.00 0.00 0.00 3.27
95 96 7.310237 GGTCACCAGGTATAGTAAAACTCAGAA 60.310 40.741 0.00 0.00 0.00 3.02
96 97 7.760340 GTCACCAGGTATAGTAAAACTCAGAAG 59.240 40.741 0.00 0.00 0.00 2.85
97 98 6.535508 CACCAGGTATAGTAAAACTCAGAAGC 59.464 42.308 0.00 0.00 0.00 3.86
98 99 6.212791 ACCAGGTATAGTAAAACTCAGAAGCA 59.787 38.462 0.00 0.00 0.00 3.91
99 100 7.092846 ACCAGGTATAGTAAAACTCAGAAGCAT 60.093 37.037 0.00 0.00 0.00 3.79
100 101 7.225538 CCAGGTATAGTAAAACTCAGAAGCATG 59.774 40.741 0.00 0.00 0.00 4.06
101 102 7.766278 CAGGTATAGTAAAACTCAGAAGCATGT 59.234 37.037 0.00 0.00 0.00 3.21
102 103 7.982354 AGGTATAGTAAAACTCAGAAGCATGTC 59.018 37.037 0.00 0.00 0.00 3.06
103 104 7.982354 GGTATAGTAAAACTCAGAAGCATGTCT 59.018 37.037 0.00 0.00 0.00 3.41
104 105 7.840342 ATAGTAAAACTCAGAAGCATGTCTG 57.160 36.000 6.94 6.94 45.44 3.51
114 115 3.587095 CATGTCTGCAGGCACAGG 58.413 61.111 25.88 14.53 38.26 4.00
115 116 2.044555 CATGTCTGCAGGCACAGGG 61.045 63.158 25.88 9.94 38.26 4.45
116 117 2.532532 ATGTCTGCAGGCACAGGGT 61.533 57.895 25.88 3.89 38.26 4.34
117 118 2.072874 ATGTCTGCAGGCACAGGGTT 62.073 55.000 25.88 2.99 38.26 4.11
118 119 1.529244 GTCTGCAGGCACAGGGTTT 60.529 57.895 14.88 0.00 38.26 3.27
119 120 1.529010 TCTGCAGGCACAGGGTTTG 60.529 57.895 15.13 0.00 38.26 2.93
120 121 1.529010 CTGCAGGCACAGGGTTTGA 60.529 57.895 5.57 0.00 33.85 2.69
121 122 0.896940 CTGCAGGCACAGGGTTTGAT 60.897 55.000 5.57 0.00 33.85 2.57
122 123 0.469705 TGCAGGCACAGGGTTTGATT 60.470 50.000 0.00 0.00 0.00 2.57
123 124 0.244721 GCAGGCACAGGGTTTGATTC 59.755 55.000 0.00 0.00 0.00 2.52
124 125 0.890683 CAGGCACAGGGTTTGATTCC 59.109 55.000 0.00 0.00 0.00 3.01
125 126 0.779997 AGGCACAGGGTTTGATTCCT 59.220 50.000 0.00 0.00 0.00 3.36
131 132 1.200020 CAGGGTTTGATTCCTGTTCGC 59.800 52.381 0.00 0.00 44.03 4.70
132 133 0.168128 GGGTTTGATTCCTGTTCGCG 59.832 55.000 0.00 0.00 0.00 5.87
133 134 0.872388 GGTTTGATTCCTGTTCGCGT 59.128 50.000 5.77 0.00 0.00 6.01
134 135 2.070783 GGTTTGATTCCTGTTCGCGTA 58.929 47.619 5.77 0.00 0.00 4.42
135 136 2.676342 GGTTTGATTCCTGTTCGCGTAT 59.324 45.455 5.77 0.00 0.00 3.06
136 137 3.126343 GGTTTGATTCCTGTTCGCGTATT 59.874 43.478 5.77 0.00 0.00 1.89
137 138 4.379082 GGTTTGATTCCTGTTCGCGTATTT 60.379 41.667 5.77 0.00 0.00 1.40
138 139 5.151389 GTTTGATTCCTGTTCGCGTATTTT 58.849 37.500 5.77 0.00 0.00 1.82
139 140 5.365403 TTGATTCCTGTTCGCGTATTTTT 57.635 34.783 5.77 0.00 0.00 1.94
164 165 3.626028 AAAAATGAGCCAACGACAGAC 57.374 42.857 0.00 0.00 0.00 3.51
166 167 0.317160 AATGAGCCAACGACAGACGA 59.683 50.000 0.00 0.00 45.77 4.20
167 168 0.532573 ATGAGCCAACGACAGACGAT 59.467 50.000 0.00 0.00 45.77 3.73
168 169 0.388520 TGAGCCAACGACAGACGATG 60.389 55.000 0.00 0.00 45.77 3.84
169 170 0.109272 GAGCCAACGACAGACGATGA 60.109 55.000 4.20 0.00 45.29 2.92
170 171 0.532573 AGCCAACGACAGACGATGAT 59.467 50.000 4.20 0.00 45.29 2.45
171 172 0.647410 GCCAACGACAGACGATGATG 59.353 55.000 4.20 0.00 45.29 3.07
172 173 1.280982 CCAACGACAGACGATGATGG 58.719 55.000 4.20 1.53 45.29 3.51
173 174 1.135112 CCAACGACAGACGATGATGGA 60.135 52.381 4.20 0.00 45.29 3.41
174 175 2.606108 CAACGACAGACGATGATGGAA 58.394 47.619 0.00 0.00 45.29 3.53
175 176 2.568696 ACGACAGACGATGATGGAAG 57.431 50.000 0.00 0.00 45.77 3.46
176 177 1.203928 CGACAGACGATGATGGAAGC 58.796 55.000 0.00 0.00 45.77 3.86
177 178 1.203928 GACAGACGATGATGGAAGCG 58.796 55.000 0.00 0.00 0.00 4.68
178 179 0.532573 ACAGACGATGATGGAAGCGT 59.467 50.000 0.00 0.00 39.99 5.07
179 180 0.926155 CAGACGATGATGGAAGCGTG 59.074 55.000 0.00 0.00 37.07 5.34
180 181 0.807667 AGACGATGATGGAAGCGTGC 60.808 55.000 0.00 0.00 37.07 5.34
181 182 1.079197 ACGATGATGGAAGCGTGCA 60.079 52.632 0.00 0.00 35.44 4.57
182 183 0.462581 ACGATGATGGAAGCGTGCAT 60.463 50.000 6.30 6.30 38.74 3.96
183 184 0.041576 CGATGATGGAAGCGTGCATG 60.042 55.000 11.95 0.09 35.67 4.06
184 185 0.317603 GATGATGGAAGCGTGCATGC 60.318 55.000 23.58 23.58 35.67 4.06
185 186 1.731433 ATGATGGAAGCGTGCATGCC 61.731 55.000 26.95 12.76 35.67 4.40
186 187 2.044650 ATGGAAGCGTGCATGCCT 60.045 55.556 26.95 15.32 33.98 4.75
187 188 2.332362 GATGGAAGCGTGCATGCCTG 62.332 60.000 26.95 8.67 35.67 4.85
188 189 3.058160 GGAAGCGTGCATGCCTGT 61.058 61.111 26.95 13.01 34.65 4.00
189 190 2.629656 GGAAGCGTGCATGCCTGTT 61.630 57.895 26.95 15.15 34.65 3.16
190 191 1.443194 GAAGCGTGCATGCCTGTTG 60.443 57.895 26.95 1.17 34.65 3.33
191 192 3.562779 AAGCGTGCATGCCTGTTGC 62.563 57.895 26.95 11.59 40.55 4.17
192 193 4.047059 GCGTGCATGCCTGTTGCT 62.047 61.111 20.59 0.00 40.77 3.91
193 194 2.689785 GCGTGCATGCCTGTTGCTA 61.690 57.895 20.59 0.00 40.77 3.49
194 195 1.875262 CGTGCATGCCTGTTGCTAA 59.125 52.632 16.68 0.00 40.77 3.09
195 196 0.454957 CGTGCATGCCTGTTGCTAAC 60.455 55.000 16.68 1.82 40.77 2.34
196 197 0.454957 GTGCATGCCTGTTGCTAACG 60.455 55.000 16.68 0.00 40.77 3.18
197 198 0.605050 TGCATGCCTGTTGCTAACGA 60.605 50.000 16.68 0.00 40.77 3.85
198 199 0.179189 GCATGCCTGTTGCTAACGAC 60.179 55.000 6.36 0.00 42.00 4.34
199 200 0.447801 CATGCCTGTTGCTAACGACC 59.552 55.000 0.00 0.00 42.00 4.79
200 201 0.036164 ATGCCTGTTGCTAACGACCA 59.964 50.000 0.00 0.00 42.00 4.02
201 202 0.602638 TGCCTGTTGCTAACGACCAG 60.603 55.000 0.00 0.00 42.00 4.00
202 203 0.602905 GCCTGTTGCTAACGACCAGT 60.603 55.000 0.00 0.00 36.87 4.00
203 204 1.429463 CCTGTTGCTAACGACCAGTC 58.571 55.000 0.00 0.00 0.00 3.51
217 218 2.084546 ACCAGTCGGCAGAAATTTAGC 58.915 47.619 6.56 6.56 34.57 3.09
218 219 2.290323 ACCAGTCGGCAGAAATTTAGCT 60.290 45.455 13.02 0.00 34.57 3.32
219 220 2.749621 CCAGTCGGCAGAAATTTAGCTT 59.250 45.455 13.02 0.00 0.00 3.74
220 221 3.191371 CCAGTCGGCAGAAATTTAGCTTT 59.809 43.478 13.02 0.00 0.00 3.51
221 222 4.406943 CAGTCGGCAGAAATTTAGCTTTC 58.593 43.478 13.02 0.00 35.74 2.62
222 223 4.154918 CAGTCGGCAGAAATTTAGCTTTCT 59.845 41.667 13.02 0.00 44.34 2.52
223 224 4.393371 AGTCGGCAGAAATTTAGCTTTCTC 59.607 41.667 13.02 0.00 42.21 2.87
224 225 3.370978 TCGGCAGAAATTTAGCTTTCTCG 59.629 43.478 13.02 8.79 42.21 4.04
225 226 3.485877 CGGCAGAAATTTAGCTTTCTCGG 60.486 47.826 13.02 0.00 42.21 4.63
229 230 5.393962 CAGAAATTTAGCTTTCTCGGTTGG 58.606 41.667 0.00 0.00 42.21 3.77
241 242 6.308041 GCTTTCTCGGTTGGAAAAATGAATAC 59.692 38.462 0.00 0.00 33.17 1.89
267 268 6.262056 TCTCCCCTACTTCTTGAAACTTTT 57.738 37.500 0.00 0.00 0.00 2.27
293 294 2.808543 GAGTGAGACTCCACGCAAATTT 59.191 45.455 0.00 0.00 39.28 1.82
322 323 1.586422 TTGAATAGCGCATCTGAGCC 58.414 50.000 11.47 0.00 41.94 4.70
344 345 3.623960 CGAAGGGTCTGTTTGTGTTAACA 59.376 43.478 3.59 3.59 36.63 2.41
365 366 2.255554 GCGATCGCGAGCCATCTA 59.744 61.111 26.12 0.00 40.82 1.98
366 367 1.153939 GCGATCGCGAGCCATCTAT 60.154 57.895 26.12 0.00 40.82 1.98
384 385 0.181350 ATCCTCCCACTCGAATTGCC 59.819 55.000 0.00 0.00 0.00 4.52
403 404 0.912486 CCGACCTCCTCTTTTCCCAT 59.088 55.000 0.00 0.00 0.00 4.00
411 412 4.568380 CCTCCTCTTTTCCCATGACATCAA 60.568 45.833 0.00 0.00 0.00 2.57
427 428 5.169992 ACATCAACATCCACTCTTCATCA 57.830 39.130 0.00 0.00 0.00 3.07
435 436 6.715280 ACATCCACTCTTCATCATGTAAGTT 58.285 36.000 0.00 0.00 0.00 2.66
454 456 5.426689 AGTTCATAGCTTCAACATCTCCA 57.573 39.130 0.00 0.00 0.00 3.86
461 463 2.941720 GCTTCAACATCTCCACCAGATC 59.058 50.000 0.00 0.00 40.20 2.75
463 465 4.582869 CTTCAACATCTCCACCAGATCAA 58.417 43.478 0.00 0.00 40.20 2.57
478 480 1.273327 GATCAAAACTTGCACCCCTGG 59.727 52.381 0.00 0.00 0.00 4.45
481 483 2.603933 AAAACTTGCACCCCTGGCCT 62.604 55.000 3.32 0.00 0.00 5.19
540 542 3.623960 TGGGTTTCAGAACTAACAACACG 59.376 43.478 0.00 0.00 36.03 4.49
555 557 0.179056 ACACGATCCCCGCATAAAGG 60.179 55.000 0.00 0.00 43.32 3.11
560 562 0.179018 ATCCCCGCATAAAGGCTCAC 60.179 55.000 0.00 0.00 0.00 3.51
577 579 0.944311 CACGTCTTCCTTGACACCCG 60.944 60.000 0.00 0.00 36.82 5.28
580 582 2.742372 CTTCCTTGACACCCGCGG 60.742 66.667 21.04 21.04 0.00 6.46
625 627 6.607198 AGAAAATCACTTGGGAAAAACTCTCA 59.393 34.615 0.00 0.00 30.28 3.27
629 631 4.065088 CACTTGGGAAAAACTCTCATCGA 58.935 43.478 0.00 0.00 33.30 3.59
640 642 4.418013 ACTCTCATCGATGCTAAGATCG 57.582 45.455 20.81 9.75 45.43 3.69
646 648 0.317854 CGATGCTAAGATCGCCGACA 60.318 55.000 0.00 0.00 38.90 4.35
665 675 2.308275 ACAGAGGACTAACTACGAGGGT 59.692 50.000 0.00 0.00 0.00 4.34
704 714 3.315765 AAAAATCTCGTCCCGTGCA 57.684 47.368 0.00 0.00 0.00 4.57
705 715 1.821216 AAAAATCTCGTCCCGTGCAT 58.179 45.000 0.00 0.00 0.00 3.96
708 718 4.794439 TCTCGTCCCGTGCATGCG 62.794 66.667 14.09 0.00 0.00 4.73
713 723 1.729131 GTCCCGTGCATGCGTTTTG 60.729 57.895 14.09 0.27 0.00 2.44
742 2484 4.376450 TTTTTGTGCGTGTGTGTTTTTC 57.624 36.364 0.00 0.00 0.00 2.29
745 2487 2.590073 TGTGCGTGTGTGTTTTTCTTG 58.410 42.857 0.00 0.00 0.00 3.02
746 2488 2.226674 TGTGCGTGTGTGTTTTTCTTGA 59.773 40.909 0.00 0.00 0.00 3.02
748 2490 2.744741 TGCGTGTGTGTTTTTCTTGAGA 59.255 40.909 0.00 0.00 0.00 3.27
752 2494 5.331902 CGTGTGTGTTTTTCTTGAGACATT 58.668 37.500 0.00 0.00 0.00 2.71
754 2496 6.307800 CGTGTGTGTTTTTCTTGAGACATTTT 59.692 34.615 0.00 0.00 0.00 1.82
814 2796 0.321996 GAGCGACTGGACCTCCTTTT 59.678 55.000 0.00 0.00 36.82 2.27
894 2888 1.377725 CGAACTGCCAGCCCATTCT 60.378 57.895 0.00 0.00 0.00 2.40
1056 3050 3.139077 GAGTCAAACACCAAATCTCGGT 58.861 45.455 0.00 0.00 37.16 4.69
1107 3101 2.022195 TCCCTCGATTCGAATTCGTCT 58.978 47.619 25.93 15.02 40.80 4.18
1179 3174 0.318441 GAGATCGAATGCGGGGATCA 59.682 55.000 0.00 0.00 39.17 2.92
1189 3184 0.100503 GCGGGGATCAAATTCGGTTG 59.899 55.000 0.00 0.00 0.00 3.77
1717 3712 2.507992 CAGCAACTCCTCTCGGCG 60.508 66.667 0.00 0.00 0.00 6.46
1853 3848 0.693049 AGGACCGACCATTGCTTTCT 59.307 50.000 0.00 0.00 42.04 2.52
1938 3933 1.475280 TGGGAGAAGGACGTGTATTCG 59.525 52.381 0.00 0.00 0.00 3.34
1983 3978 1.303799 ACGGCTGCTTTGCTGATCTG 61.304 55.000 11.51 0.00 41.56 2.90
2131 4126 2.254459 CTCGCAGATATGCACGGATAC 58.746 52.381 13.57 0.00 33.89 2.24
2308 4303 6.516718 AGTATGTTCTCCCACGAAATATCTG 58.483 40.000 0.00 0.00 0.00 2.90
2357 4352 2.764637 TTTCCCCGGCAAGGAGAAGC 62.765 60.000 0.00 0.00 45.00 3.86
2607 4602 4.844085 TCTCACAGGATCCCTTTGTTTAGA 59.156 41.667 8.55 8.87 33.46 2.10
2627 4622 5.643421 AGATTTACTCATGAGGCTGGAAT 57.357 39.130 26.08 16.45 0.00 3.01
2683 4678 4.717233 AATCTGCGGCATCAAAATACAA 57.283 36.364 1.75 0.00 0.00 2.41
2701 4696 2.233271 CAATGGCAAGTGTGACTCCTT 58.767 47.619 0.00 0.00 31.93 3.36
2712 4707 1.056660 TGACTCCTTTGTCCCCACTC 58.943 55.000 0.00 0.00 36.21 3.51
2722 4717 0.606673 GTCCCCACTCTCAGGTTTGC 60.607 60.000 0.00 0.00 0.00 3.68
2739 4734 5.951747 AGGTTTGCATAGTGATACAAATGGT 59.048 36.000 0.00 0.00 32.25 3.55
2772 4767 0.590195 CTATGGCGCAATTCTCCAGC 59.410 55.000 10.83 0.00 32.24 4.85
2842 4837 9.283768 TGATGAACTACAATAACAAGTTGTCAT 57.716 29.630 9.40 0.00 40.13 3.06
2944 4939 3.376234 CCATGTGGTTTCAGATGCTACAG 59.624 47.826 0.00 0.00 41.63 2.74
2994 4989 5.870433 TCCAATGCTTAACGAAGAAATACGA 59.130 36.000 0.00 0.00 34.25 3.43
3012 5007 1.303309 GATGGGTCGAAGATGGCTTG 58.697 55.000 0.00 0.00 40.67 4.01
3044 5039 2.104281 GTGGGGTATTTCGAGCTGGTAT 59.896 50.000 0.00 0.00 0.00 2.73
3047 5042 3.181458 GGGGTATTTCGAGCTGGTATTGA 60.181 47.826 0.00 0.00 0.00 2.57
3165 5160 6.315144 GGGAAATATGGGCAATGTACAAAAAC 59.685 38.462 0.00 0.00 0.00 2.43
3276 5271 0.250038 ATGTGTGCAGCTTGACTCGT 60.250 50.000 0.00 0.00 0.00 4.18
3479 5474 6.299805 TCTTAGGAGCATACATTGACAGTT 57.700 37.500 0.00 0.00 0.00 3.16
3481 5476 4.558226 AGGAGCATACATTGACAGTTCA 57.442 40.909 0.00 0.00 0.00 3.18
3622 5618 5.514274 TGTTTGTTCACCTTTCCTTCATC 57.486 39.130 0.00 0.00 0.00 2.92
3631 5627 3.517901 ACCTTTCCTTCATCGTACCATCA 59.482 43.478 0.00 0.00 0.00 3.07
3652 5648 9.199982 CCATCATTTTGCAATGGTTATATCTTC 57.800 33.333 0.00 0.00 40.41 2.87
3678 5674 8.034313 TGTCCTCTATTTTACCAATAGCAGAT 57.966 34.615 0.00 0.00 31.88 2.90
3804 5804 7.669438 CAACAATTGAAGTGTTGTCTTACTG 57.331 36.000 25.09 3.31 46.97 2.74
3837 5837 5.565834 GCCACCAAATTTCTTGAACCGAATA 60.566 40.000 0.00 0.00 0.00 1.75
3877 5881 4.647424 GCTACTCAGCTTCTGTATCTGT 57.353 45.455 0.00 0.00 44.93 3.41
3946 5950 4.449743 TGCCGTGTTCACTATTACTGTTTC 59.550 41.667 1.53 0.00 0.00 2.78
3971 5975 5.132043 AGTAGATGGTACTAGCAGGTTCT 57.868 43.478 0.00 0.00 0.00 3.01
3981 5985 1.973812 GCAGGTTCTCAGTTGGGGC 60.974 63.158 0.00 0.00 0.00 5.80
3982 5986 1.303643 CAGGTTCTCAGTTGGGGCC 60.304 63.158 0.00 0.00 0.00 5.80
3983 5987 1.774217 AGGTTCTCAGTTGGGGCCA 60.774 57.895 4.39 0.00 0.00 5.36
3984 5988 1.603739 GGTTCTCAGTTGGGGCCAC 60.604 63.158 4.39 0.00 0.00 5.01
3985 5989 1.603739 GTTCTCAGTTGGGGCCACC 60.604 63.158 0.20 2.19 40.81 4.61
4018 6022 1.704641 AAAAGGTTCTCAGTTGGGGC 58.295 50.000 0.00 0.00 0.00 5.80
4026 6030 2.832838 TCTCAGTTGGGGCTATCTTCA 58.167 47.619 0.00 0.00 0.00 3.02
4099 6192 7.038941 GGCCTGGTAATGTTCTCTATGTACTAT 60.039 40.741 0.00 0.00 0.00 2.12
4100 6193 7.815068 GCCTGGTAATGTTCTCTATGTACTATG 59.185 40.741 0.00 0.00 0.00 2.23
4103 6196 8.577296 TGGTAATGTTCTCTATGTACTATGAGC 58.423 37.037 0.00 0.00 0.00 4.26
4104 6197 8.030106 GGTAATGTTCTCTATGTACTATGAGCC 58.970 40.741 0.00 0.00 0.00 4.70
4105 6198 7.847711 AATGTTCTCTATGTACTATGAGCCT 57.152 36.000 0.00 0.00 0.00 4.58
4183 6293 4.096382 GGCCACACATTGATAGTTCGAAAT 59.904 41.667 2.72 2.72 0.00 2.17
4188 6298 8.223769 CCACACATTGATAGTTCGAAATATAGC 58.776 37.037 17.32 7.58 0.00 2.97
4235 6345 4.712337 TGTAACCCTTTGTTGTTGGTTCAT 59.288 37.500 0.00 0.00 41.22 2.57
4299 6409 7.004086 TGATTGTTTATCTGTCAAGGGAGTTT 58.996 34.615 0.00 0.00 34.17 2.66
4334 6444 7.229506 CCCTTTCCTTCATTATACCATCTGTTC 59.770 40.741 0.00 0.00 0.00 3.18
4340 6450 7.063898 CCTTCATTATACCATCTGTTCGCTATG 59.936 40.741 0.00 0.00 0.00 2.23
4341 6451 6.398095 TCATTATACCATCTGTTCGCTATGG 58.602 40.000 0.00 0.00 44.76 2.74
4342 6452 6.210584 TCATTATACCATCTGTTCGCTATGGA 59.789 38.462 7.54 0.00 42.36 3.41
4343 6453 6.605471 TTATACCATCTGTTCGCTATGGAT 57.395 37.500 7.54 0.65 42.36 3.41
4410 6522 4.699637 TGACAGTAAAACATGGAACTCGT 58.300 39.130 0.00 0.00 0.00 4.18
4443 6557 4.172505 GACAAACACAGAACATGCAACAA 58.827 39.130 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.706140 GTGATTACCGCGAGCAGG 58.294 61.111 8.23 0.00 0.00 4.85
7 8 4.220533 ACAGTAGATACGTGATTACCGC 57.779 45.455 0.00 0.00 0.00 5.68
8 9 7.691463 GCTAATACAGTAGATACGTGATTACCG 59.309 40.741 0.00 0.00 0.00 4.02
9 10 7.967303 GGCTAATACAGTAGATACGTGATTACC 59.033 40.741 0.00 0.00 0.00 2.85
10 11 7.967303 GGGCTAATACAGTAGATACGTGATTAC 59.033 40.741 0.00 0.00 0.00 1.89
11 12 7.666804 TGGGCTAATACAGTAGATACGTGATTA 59.333 37.037 0.00 0.00 0.00 1.75
12 13 6.492429 TGGGCTAATACAGTAGATACGTGATT 59.508 38.462 0.00 0.00 0.00 2.57
13 14 6.008331 TGGGCTAATACAGTAGATACGTGAT 58.992 40.000 0.00 0.00 0.00 3.06
14 15 5.379187 TGGGCTAATACAGTAGATACGTGA 58.621 41.667 0.00 0.00 0.00 4.35
15 16 5.700722 TGGGCTAATACAGTAGATACGTG 57.299 43.478 0.00 0.00 0.00 4.49
16 17 6.912951 ATTGGGCTAATACAGTAGATACGT 57.087 37.500 0.00 0.00 0.00 3.57
17 18 6.812160 GGAATTGGGCTAATACAGTAGATACG 59.188 42.308 0.00 0.00 0.00 3.06
18 19 7.676947 TGGAATTGGGCTAATACAGTAGATAC 58.323 38.462 0.00 0.00 0.00 2.24
19 20 7.865530 TGGAATTGGGCTAATACAGTAGATA 57.134 36.000 0.00 0.00 0.00 1.98
20 21 6.763715 TGGAATTGGGCTAATACAGTAGAT 57.236 37.500 0.00 0.00 0.00 1.98
21 22 6.569127 TTGGAATTGGGCTAATACAGTAGA 57.431 37.500 0.00 0.00 0.00 2.59
22 23 6.601613 TGTTTGGAATTGGGCTAATACAGTAG 59.398 38.462 0.00 0.00 0.00 2.57
23 24 6.486056 TGTTTGGAATTGGGCTAATACAGTA 58.514 36.000 0.00 0.00 0.00 2.74
24 25 5.329399 TGTTTGGAATTGGGCTAATACAGT 58.671 37.500 0.00 0.00 0.00 3.55
25 26 5.652014 TCTGTTTGGAATTGGGCTAATACAG 59.348 40.000 13.99 13.99 0.00 2.74
26 27 5.575157 TCTGTTTGGAATTGGGCTAATACA 58.425 37.500 0.00 0.00 0.00 2.29
27 28 6.071616 TGTTCTGTTTGGAATTGGGCTAATAC 60.072 38.462 0.00 0.00 0.00 1.89
28 29 6.013379 TGTTCTGTTTGGAATTGGGCTAATA 58.987 36.000 0.00 0.00 0.00 0.98
29 30 4.837860 TGTTCTGTTTGGAATTGGGCTAAT 59.162 37.500 0.00 0.00 0.00 1.73
30 31 4.219115 TGTTCTGTTTGGAATTGGGCTAA 58.781 39.130 0.00 0.00 0.00 3.09
31 32 3.838565 TGTTCTGTTTGGAATTGGGCTA 58.161 40.909 0.00 0.00 0.00 3.93
32 33 2.676748 TGTTCTGTTTGGAATTGGGCT 58.323 42.857 0.00 0.00 0.00 5.19
33 34 3.244181 ACATGTTCTGTTTGGAATTGGGC 60.244 43.478 0.00 0.00 32.90 5.36
34 35 4.309099 CACATGTTCTGTTTGGAATTGGG 58.691 43.478 0.00 0.00 35.29 4.12
35 36 4.202243 ACCACATGTTCTGTTTGGAATTGG 60.202 41.667 0.00 0.00 35.29 3.16
36 37 4.947645 ACCACATGTTCTGTTTGGAATTG 58.052 39.130 0.00 0.00 35.29 2.32
37 38 5.358922 CAACCACATGTTCTGTTTGGAATT 58.641 37.500 0.00 0.00 35.29 2.17
38 39 4.202243 CCAACCACATGTTCTGTTTGGAAT 60.202 41.667 12.33 0.00 43.85 3.01
39 40 3.131933 CCAACCACATGTTCTGTTTGGAA 59.868 43.478 12.33 0.00 43.85 3.53
40 41 2.692557 CCAACCACATGTTCTGTTTGGA 59.307 45.455 12.33 0.00 43.85 3.53
41 42 2.802774 GCCAACCACATGTTCTGTTTGG 60.803 50.000 0.00 6.01 43.92 3.28
42 43 2.101249 AGCCAACCACATGTTCTGTTTG 59.899 45.455 0.00 0.00 35.29 2.93
43 44 2.101249 CAGCCAACCACATGTTCTGTTT 59.899 45.455 0.00 0.00 35.29 2.83
44 45 1.682854 CAGCCAACCACATGTTCTGTT 59.317 47.619 0.00 0.00 35.29 3.16
45 46 1.133823 TCAGCCAACCACATGTTCTGT 60.134 47.619 0.00 0.00 39.20 3.41
46 47 1.538512 CTCAGCCAACCACATGTTCTG 59.461 52.381 0.00 0.00 34.00 3.02
47 48 1.421268 TCTCAGCCAACCACATGTTCT 59.579 47.619 0.00 0.00 34.00 3.01
48 49 1.896220 TCTCAGCCAACCACATGTTC 58.104 50.000 0.00 0.00 34.00 3.18
49 50 2.165167 CATCTCAGCCAACCACATGTT 58.835 47.619 0.00 0.00 37.80 2.71
50 51 1.615116 CCATCTCAGCCAACCACATGT 60.615 52.381 0.00 0.00 0.00 3.21
51 52 1.100510 CCATCTCAGCCAACCACATG 58.899 55.000 0.00 0.00 0.00 3.21
52 53 0.700564 ACCATCTCAGCCAACCACAT 59.299 50.000 0.00 0.00 0.00 3.21
53 54 0.036732 GACCATCTCAGCCAACCACA 59.963 55.000 0.00 0.00 0.00 4.17
54 55 0.036732 TGACCATCTCAGCCAACCAC 59.963 55.000 0.00 0.00 0.00 4.16
55 56 0.036732 GTGACCATCTCAGCCAACCA 59.963 55.000 0.00 0.00 0.00 3.67
56 57 0.678048 GGTGACCATCTCAGCCAACC 60.678 60.000 0.00 0.00 40.94 3.77
57 58 0.036732 TGGTGACCATCTCAGCCAAC 59.963 55.000 0.00 0.00 45.45 3.77
58 59 0.325933 CTGGTGACCATCTCAGCCAA 59.674 55.000 4.03 0.00 45.45 4.52
59 60 1.556373 CCTGGTGACCATCTCAGCCA 61.556 60.000 4.03 0.00 45.45 4.75
60 61 1.222936 CCTGGTGACCATCTCAGCC 59.777 63.158 4.03 0.00 45.45 4.85
61 62 1.195115 TACCTGGTGACCATCTCAGC 58.805 55.000 4.03 0.00 46.12 4.26
62 63 4.219115 ACTATACCTGGTGACCATCTCAG 58.781 47.826 4.03 1.83 30.82 3.35
63 64 4.265856 ACTATACCTGGTGACCATCTCA 57.734 45.455 4.03 0.00 30.82 3.27
64 65 6.726490 TTTACTATACCTGGTGACCATCTC 57.274 41.667 4.03 0.00 30.82 2.75
65 66 6.672657 AGTTTTACTATACCTGGTGACCATCT 59.327 38.462 4.03 0.00 30.82 2.90
66 67 6.885922 AGTTTTACTATACCTGGTGACCATC 58.114 40.000 4.03 0.00 30.82 3.51
67 68 6.442564 TGAGTTTTACTATACCTGGTGACCAT 59.557 38.462 4.03 0.00 30.82 3.55
68 69 5.781306 TGAGTTTTACTATACCTGGTGACCA 59.219 40.000 10.23 3.40 0.00 4.02
69 70 6.154021 TCTGAGTTTTACTATACCTGGTGACC 59.846 42.308 10.23 0.00 0.00 4.02
70 71 7.166691 TCTGAGTTTTACTATACCTGGTGAC 57.833 40.000 10.23 0.00 0.00 3.67
71 72 7.578955 GCTTCTGAGTTTTACTATACCTGGTGA 60.579 40.741 10.23 0.00 0.00 4.02
72 73 6.535508 GCTTCTGAGTTTTACTATACCTGGTG 59.464 42.308 10.23 0.00 0.00 4.17
73 74 6.212791 TGCTTCTGAGTTTTACTATACCTGGT 59.787 38.462 4.05 4.05 0.00 4.00
74 75 6.640518 TGCTTCTGAGTTTTACTATACCTGG 58.359 40.000 0.00 0.00 0.00 4.45
75 76 7.766278 ACATGCTTCTGAGTTTTACTATACCTG 59.234 37.037 0.00 0.00 0.00 4.00
76 77 7.852263 ACATGCTTCTGAGTTTTACTATACCT 58.148 34.615 0.00 0.00 0.00 3.08
77 78 7.982354 AGACATGCTTCTGAGTTTTACTATACC 59.018 37.037 0.00 0.00 0.00 2.73
78 79 8.812329 CAGACATGCTTCTGAGTTTTACTATAC 58.188 37.037 7.41 0.00 45.19 1.47
79 80 8.932945 CAGACATGCTTCTGAGTTTTACTATA 57.067 34.615 7.41 0.00 45.19 1.31
80 81 7.840342 CAGACATGCTTCTGAGTTTTACTAT 57.160 36.000 7.41 0.00 45.19 2.12
97 98 2.044555 CCCTGTGCCTGCAGACATG 61.045 63.158 17.39 9.44 38.70 3.21
98 99 2.072874 AACCCTGTGCCTGCAGACAT 62.073 55.000 17.39 0.00 38.70 3.06
99 100 2.283143 AAACCCTGTGCCTGCAGACA 62.283 55.000 17.39 7.06 38.70 3.41
100 101 1.529244 AAACCCTGTGCCTGCAGAC 60.529 57.895 17.39 3.38 38.70 3.51
101 102 1.529010 CAAACCCTGTGCCTGCAGA 60.529 57.895 17.39 0.00 38.70 4.26
102 103 0.896940 ATCAAACCCTGTGCCTGCAG 60.897 55.000 6.78 6.78 36.31 4.41
103 104 0.469705 AATCAAACCCTGTGCCTGCA 60.470 50.000 0.00 0.00 0.00 4.41
104 105 0.244721 GAATCAAACCCTGTGCCTGC 59.755 55.000 0.00 0.00 0.00 4.85
105 106 0.890683 GGAATCAAACCCTGTGCCTG 59.109 55.000 0.00 0.00 0.00 4.85
106 107 0.779997 AGGAATCAAACCCTGTGCCT 59.220 50.000 0.00 0.00 0.00 4.75
107 108 0.890683 CAGGAATCAAACCCTGTGCC 59.109 55.000 0.00 0.00 43.71 5.01
112 113 1.534729 GCGAACAGGAATCAAACCCT 58.465 50.000 0.00 0.00 0.00 4.34
113 114 0.168128 CGCGAACAGGAATCAAACCC 59.832 55.000 0.00 0.00 0.00 4.11
114 115 0.872388 ACGCGAACAGGAATCAAACC 59.128 50.000 15.93 0.00 0.00 3.27
115 116 4.336532 AATACGCGAACAGGAATCAAAC 57.663 40.909 15.93 0.00 0.00 2.93
116 117 5.365403 AAAATACGCGAACAGGAATCAAA 57.635 34.783 15.93 0.00 0.00 2.69
117 118 5.365403 AAAAATACGCGAACAGGAATCAA 57.635 34.783 15.93 0.00 0.00 2.57
144 145 2.032030 CGTCTGTCGTTGGCTCATTTTT 60.032 45.455 0.00 0.00 34.52 1.94
145 146 1.531149 CGTCTGTCGTTGGCTCATTTT 59.469 47.619 0.00 0.00 34.52 1.82
146 147 1.148310 CGTCTGTCGTTGGCTCATTT 58.852 50.000 0.00 0.00 34.52 2.32
147 148 0.317160 TCGTCTGTCGTTGGCTCATT 59.683 50.000 0.00 0.00 40.80 2.57
148 149 0.532573 ATCGTCTGTCGTTGGCTCAT 59.467 50.000 0.00 0.00 40.80 2.90
149 150 0.388520 CATCGTCTGTCGTTGGCTCA 60.389 55.000 0.00 0.00 40.80 4.26
150 151 0.109272 TCATCGTCTGTCGTTGGCTC 60.109 55.000 5.74 0.00 39.04 4.70
151 152 0.532573 ATCATCGTCTGTCGTTGGCT 59.467 50.000 5.74 0.00 39.04 4.75
152 153 0.647410 CATCATCGTCTGTCGTTGGC 59.353 55.000 5.74 0.00 39.04 4.52
153 154 1.135112 TCCATCATCGTCTGTCGTTGG 60.135 52.381 5.74 4.57 39.04 3.77
154 155 2.278026 TCCATCATCGTCTGTCGTTG 57.722 50.000 0.06 0.06 40.80 4.10
155 156 2.881074 CTTCCATCATCGTCTGTCGTT 58.119 47.619 0.00 0.00 40.80 3.85
156 157 1.469940 GCTTCCATCATCGTCTGTCGT 60.470 52.381 0.00 0.00 40.80 4.34
157 158 1.203928 GCTTCCATCATCGTCTGTCG 58.796 55.000 0.00 0.00 41.41 4.35
158 159 1.203928 CGCTTCCATCATCGTCTGTC 58.796 55.000 0.00 0.00 0.00 3.51
159 160 0.532573 ACGCTTCCATCATCGTCTGT 59.467 50.000 0.00 0.00 0.00 3.41
160 161 0.926155 CACGCTTCCATCATCGTCTG 59.074 55.000 0.00 0.00 32.38 3.51
161 162 0.807667 GCACGCTTCCATCATCGTCT 60.808 55.000 0.00 0.00 32.38 4.18
162 163 1.083806 TGCACGCTTCCATCATCGTC 61.084 55.000 0.00 0.00 32.38 4.20
163 164 0.462581 ATGCACGCTTCCATCATCGT 60.463 50.000 0.00 0.00 35.35 3.73
164 165 0.041576 CATGCACGCTTCCATCATCG 60.042 55.000 0.00 0.00 0.00 3.84
165 166 0.317603 GCATGCACGCTTCCATCATC 60.318 55.000 14.21 0.00 0.00 2.92
166 167 1.731433 GGCATGCACGCTTCCATCAT 61.731 55.000 21.36 0.00 0.00 2.45
167 168 2.409055 GGCATGCACGCTTCCATCA 61.409 57.895 21.36 0.00 0.00 3.07
168 169 2.117156 AGGCATGCACGCTTCCATC 61.117 57.895 21.36 0.00 0.00 3.51
169 170 2.044650 AGGCATGCACGCTTCCAT 60.045 55.556 21.36 0.00 0.00 3.41
170 171 3.057548 CAGGCATGCACGCTTCCA 61.058 61.111 21.36 0.00 0.00 3.53
171 172 2.629656 AACAGGCATGCACGCTTCC 61.630 57.895 21.36 0.00 0.00 3.46
172 173 1.443194 CAACAGGCATGCACGCTTC 60.443 57.895 21.36 0.00 0.00 3.86
173 174 2.646719 CAACAGGCATGCACGCTT 59.353 55.556 21.36 0.00 0.00 4.68
174 175 4.047059 GCAACAGGCATGCACGCT 62.047 61.111 21.36 4.35 43.29 5.07
183 184 0.602905 ACTGGTCGTTAGCAACAGGC 60.603 55.000 0.00 0.00 45.30 4.85
184 185 1.429463 GACTGGTCGTTAGCAACAGG 58.571 55.000 0.00 0.00 33.63 4.00
185 186 1.060713 CGACTGGTCGTTAGCAACAG 58.939 55.000 14.05 0.00 46.99 3.16
186 187 3.188773 CGACTGGTCGTTAGCAACA 57.811 52.632 14.05 0.00 46.99 3.33
196 197 2.096013 GCTAAATTTCTGCCGACTGGTC 59.904 50.000 0.00 0.00 37.67 4.02
197 198 2.084546 GCTAAATTTCTGCCGACTGGT 58.915 47.619 0.00 0.00 37.67 4.00
198 199 2.359900 AGCTAAATTTCTGCCGACTGG 58.640 47.619 11.08 0.00 38.77 4.00
199 200 4.154918 AGAAAGCTAAATTTCTGCCGACTG 59.845 41.667 11.08 0.00 45.52 3.51
200 201 4.327680 AGAAAGCTAAATTTCTGCCGACT 58.672 39.130 11.08 6.60 45.52 4.18
201 202 4.653004 GAGAAAGCTAAATTTCTGCCGAC 58.347 43.478 6.45 4.95 46.84 4.79
202 203 3.370978 CGAGAAAGCTAAATTTCTGCCGA 59.629 43.478 6.45 0.00 46.84 5.54
203 204 3.485877 CCGAGAAAGCTAAATTTCTGCCG 60.486 47.826 6.45 5.22 46.84 5.69
204 205 3.440522 ACCGAGAAAGCTAAATTTCTGCC 59.559 43.478 6.45 0.00 46.84 4.85
205 206 4.686839 ACCGAGAAAGCTAAATTTCTGC 57.313 40.909 6.45 0.64 46.84 4.26
206 207 5.181245 TCCAACCGAGAAAGCTAAATTTCTG 59.819 40.000 6.45 0.00 46.84 3.02
208 209 5.622770 TCCAACCGAGAAAGCTAAATTTC 57.377 39.130 0.00 0.00 39.09 2.17
209 210 6.399639 TTTCCAACCGAGAAAGCTAAATTT 57.600 33.333 0.00 0.00 0.00 1.82
210 211 6.399639 TTTTCCAACCGAGAAAGCTAAATT 57.600 33.333 0.00 0.00 34.84 1.82
211 212 6.399639 TTTTTCCAACCGAGAAAGCTAAAT 57.600 33.333 0.00 0.00 34.84 1.40
212 213 5.838531 TTTTTCCAACCGAGAAAGCTAAA 57.161 34.783 0.00 0.00 34.84 1.85
213 214 5.533154 TCATTTTTCCAACCGAGAAAGCTAA 59.467 36.000 0.00 0.00 34.84 3.09
214 215 5.067273 TCATTTTTCCAACCGAGAAAGCTA 58.933 37.500 0.00 0.00 34.84 3.32
215 216 3.888930 TCATTTTTCCAACCGAGAAAGCT 59.111 39.130 0.00 0.00 34.84 3.74
216 217 4.237349 TCATTTTTCCAACCGAGAAAGC 57.763 40.909 0.00 0.00 34.84 3.51
217 218 6.523201 CGTATTCATTTTTCCAACCGAGAAAG 59.477 38.462 0.00 0.00 34.84 2.62
218 219 6.016943 ACGTATTCATTTTTCCAACCGAGAAA 60.017 34.615 0.00 0.00 0.00 2.52
219 220 5.470777 ACGTATTCATTTTTCCAACCGAGAA 59.529 36.000 0.00 0.00 0.00 2.87
220 221 4.998672 ACGTATTCATTTTTCCAACCGAGA 59.001 37.500 0.00 0.00 0.00 4.04
221 222 5.291293 ACGTATTCATTTTTCCAACCGAG 57.709 39.130 0.00 0.00 0.00 4.63
222 223 5.470777 AGAACGTATTCATTTTTCCAACCGA 59.529 36.000 0.00 0.00 37.29 4.69
223 224 5.695818 AGAACGTATTCATTTTTCCAACCG 58.304 37.500 0.00 0.00 37.29 4.44
224 225 6.090783 GGAGAACGTATTCATTTTTCCAACC 58.909 40.000 0.00 0.00 37.29 3.77
225 226 6.090783 GGGAGAACGTATTCATTTTTCCAAC 58.909 40.000 0.00 0.00 37.29 3.77
229 230 6.822170 AGTAGGGGAGAACGTATTCATTTTTC 59.178 38.462 0.00 0.00 37.29 2.29
241 242 3.955650 TTCAAGAAGTAGGGGAGAACG 57.044 47.619 0.00 0.00 0.00 3.95
303 304 1.586422 GGCTCAGATGCGCTATTCAA 58.414 50.000 9.73 0.00 0.00 2.69
322 323 3.623960 TGTTAACACAAACAGACCCTTCG 59.376 43.478 3.59 0.00 34.50 3.79
350 351 0.814457 AGGATAGATGGCTCGCGATC 59.186 55.000 10.36 4.94 0.00 3.69
352 353 1.244697 GGAGGATAGATGGCTCGCGA 61.245 60.000 9.26 9.26 0.00 5.87
365 366 0.181350 GGCAATTCGAGTGGGAGGAT 59.819 55.000 0.95 0.00 0.00 3.24
366 367 1.602237 GGCAATTCGAGTGGGAGGA 59.398 57.895 0.95 0.00 0.00 3.71
384 385 0.912486 ATGGGAAAAGAGGAGGTCGG 59.088 55.000 0.00 0.00 0.00 4.79
403 404 4.622260 TGAAGAGTGGATGTTGATGTCA 57.378 40.909 0.00 0.00 0.00 3.58
411 412 6.305272 ACTTACATGATGAAGAGTGGATGT 57.695 37.500 0.00 0.00 0.00 3.06
427 428 7.497249 GGAGATGTTGAAGCTATGAACTTACAT 59.503 37.037 0.00 0.00 31.93 2.29
435 436 3.519107 TGGTGGAGATGTTGAAGCTATGA 59.481 43.478 0.00 0.00 0.00 2.15
454 456 1.963515 GGGTGCAAGTTTTGATCTGGT 59.036 47.619 0.00 0.00 0.00 4.00
461 463 1.069596 GCCAGGGGTGCAAGTTTTG 59.930 57.895 0.00 0.00 0.00 2.44
463 465 2.524148 GGCCAGGGGTGCAAGTTT 60.524 61.111 0.00 0.00 0.00 2.66
500 502 2.301346 CCAATATGGTGGTTGAGGCTC 58.699 52.381 7.79 7.79 33.63 4.70
540 542 0.108585 TGAGCCTTTATGCGGGGATC 59.891 55.000 0.00 0.00 36.24 3.36
555 557 1.140816 GTGTCAAGGAAGACGTGAGC 58.859 55.000 0.00 0.00 41.41 4.26
560 562 2.027625 GCGGGTGTCAAGGAAGACG 61.028 63.158 0.00 0.00 41.41 4.18
580 582 1.725557 TACCAGATCGTCGCCTGCTC 61.726 60.000 8.40 0.00 0.00 4.26
585 587 2.288961 TTTCTTACCAGATCGTCGCC 57.711 50.000 0.00 0.00 0.00 5.54
586 588 3.863424 TGATTTTCTTACCAGATCGTCGC 59.137 43.478 0.00 0.00 0.00 5.19
590 592 5.065218 CCCAAGTGATTTTCTTACCAGATCG 59.935 44.000 0.00 0.00 0.00 3.69
594 596 6.648879 TTTCCCAAGTGATTTTCTTACCAG 57.351 37.500 0.00 0.00 0.00 4.00
629 631 1.000827 CTCTGTCGGCGATCTTAGCAT 60.001 52.381 14.79 0.00 36.08 3.79
640 642 1.063764 CGTAGTTAGTCCTCTGTCGGC 59.936 57.143 0.00 0.00 0.00 5.54
646 648 5.385628 AATACCCTCGTAGTTAGTCCTCT 57.614 43.478 0.00 0.00 0.00 3.69
695 705 1.729131 CAAAACGCATGCACGGGAC 60.729 57.895 19.57 0.00 37.37 4.46
696 706 1.729470 AACAAAACGCATGCACGGGA 61.729 50.000 19.57 0.00 37.37 5.14
697 707 0.873743 AAACAAAACGCATGCACGGG 60.874 50.000 19.57 3.36 37.37 5.28
699 709 2.222685 ACAAAAACAAAACGCATGCACG 60.223 40.909 19.57 4.59 39.50 5.34
700 710 3.382015 ACAAAAACAAAACGCATGCAC 57.618 38.095 19.57 0.00 0.00 4.57
701 711 4.410492 AAACAAAAACAAAACGCATGCA 57.590 31.818 19.57 0.00 0.00 3.96
702 712 5.737637 AAAAACAAAAACAAAACGCATGC 57.262 30.435 7.91 7.91 0.00 4.06
754 2496 6.926272 GCACCCACAATGTTATTACTCAAAAA 59.074 34.615 0.00 0.00 0.00 1.94
756 2498 5.335269 CGCACCCACAATGTTATTACTCAAA 60.335 40.000 0.00 0.00 0.00 2.69
757 2499 4.155099 CGCACCCACAATGTTATTACTCAA 59.845 41.667 0.00 0.00 0.00 3.02
760 2502 3.438781 CACGCACCCACAATGTTATTACT 59.561 43.478 0.00 0.00 0.00 2.24
761 2503 3.753842 CACGCACCCACAATGTTATTAC 58.246 45.455 0.00 0.00 0.00 1.89
763 2505 1.067915 GCACGCACCCACAATGTTATT 60.068 47.619 0.00 0.00 0.00 1.40
768 2510 0.940519 CAAAGCACGCACCCACAATG 60.941 55.000 0.00 0.00 0.00 2.82
771 2513 3.898509 GCAAAGCACGCACCCACA 61.899 61.111 0.00 0.00 0.00 4.17
774 2516 2.126346 GATGCAAAGCACGCACCC 60.126 61.111 0.00 0.00 43.04 4.61
775 2517 0.730494 GAAGATGCAAAGCACGCACC 60.730 55.000 0.00 0.00 43.04 5.01
814 2796 3.797353 GAATGGCCCGGCAGAGGA 61.797 66.667 12.58 0.00 0.00 3.71
853 2835 4.083271 GGAATGCTTGTTTGTACAGACTCC 60.083 45.833 16.63 10.42 35.28 3.85
989 2983 3.636231 CTTCCCCAGTGGCGGTGA 61.636 66.667 2.61 0.00 0.00 4.02
1179 3174 2.536761 TCCTCGTCACAACCGAATTT 57.463 45.000 0.00 0.00 33.34 1.82
1189 3184 1.363744 CAGCCAGAAATCCTCGTCAC 58.636 55.000 0.00 0.00 0.00 3.67
1464 3459 4.337304 TCCAGCTGGGCCAGGAGA 62.337 66.667 33.43 14.48 36.21 3.71
1531 3526 0.396811 AGCACCTTGTAGGCTTCGTT 59.603 50.000 0.00 0.00 39.63 3.85
1717 3712 3.135530 ACTCTATCCAGGTCAGGATTTGC 59.864 47.826 0.23 0.00 46.12 3.68
1779 3774 2.766345 TTCCTGCATCCAAAAATGGC 57.234 45.000 0.00 0.00 0.00 4.40
1853 3848 1.067060 CGAACTCGCCATCATCACCTA 59.933 52.381 0.00 0.00 0.00 3.08
1983 3978 2.033049 GTCATCTTGCATGGCATCTGAC 59.967 50.000 0.00 10.45 38.76 3.51
2131 4126 7.532571 TGCATCTTATCTGTCAAAACTTCATG 58.467 34.615 0.00 0.00 0.00 3.07
2308 4303 7.212976 TCAAGATGCTGATTTAGAGTATCACC 58.787 38.462 0.00 0.00 35.61 4.02
2328 4323 1.631388 TGCCGGGGAAATACTTCAAGA 59.369 47.619 2.18 0.00 32.75 3.02
2357 4352 1.487976 AGTCACTGTAGATGGCCCATG 59.512 52.381 0.00 0.00 0.00 3.66
2463 4458 0.512952 GCGCAACTGTACAACCTGAG 59.487 55.000 0.30 0.00 0.00 3.35
2499 4494 3.682858 TCTGGAAAACGCTTCTAAATCCG 59.317 43.478 0.00 0.00 0.00 4.18
2607 4602 6.465035 GGACTATTCCAGCCTCATGAGTAAAT 60.465 42.308 21.11 13.84 42.30 1.40
2627 4622 3.840666 AGAATGTTCAAGCTCCAGGACTA 59.159 43.478 0.00 0.00 0.00 2.59
2683 4678 2.233271 CAAAGGAGTCACACTTGCCAT 58.767 47.619 0.00 0.00 0.00 4.40
2701 4696 1.142870 CAAACCTGAGAGTGGGGACAA 59.857 52.381 0.00 0.00 46.06 3.18
2712 4707 6.741992 TTTGTATCACTATGCAAACCTGAG 57.258 37.500 0.00 0.00 41.11 3.35
2739 4734 2.097954 CGCCATAGCAGCTTCATGAAAA 59.902 45.455 9.88 0.00 39.83 2.29
2772 4767 4.946784 ACCTAAATTGCTAGTTGAAGCG 57.053 40.909 0.00 0.00 45.85 4.68
2842 4837 3.527253 TGCCCCTCCATAAAATCTTCAGA 59.473 43.478 0.00 0.00 0.00 3.27
2944 4939 4.991687 TGGTTCCAACTTCAACACAAAAAC 59.008 37.500 0.00 0.00 0.00 2.43
2994 4989 0.749454 GCAAGCCATCTTCGACCCAT 60.749 55.000 0.00 0.00 0.00 4.00
3012 5007 3.853698 TACCCCACAAGCAACCGGC 62.854 63.158 0.00 0.00 45.30 6.13
3044 5039 9.653287 CTGATATGTCCTTGTAAGTAGTTTCAA 57.347 33.333 2.80 2.80 0.00 2.69
3047 5042 7.852263 AGCTGATATGTCCTTGTAAGTAGTTT 58.148 34.615 0.00 0.00 0.00 2.66
3165 5160 7.987458 TCAGTGCTATTTAAGGTAATCTTCCAG 59.013 37.037 0.00 0.00 36.93 3.86
3237 5232 7.765819 CACACATTAACTCCATTCTCATCAGTA 59.234 37.037 0.00 0.00 0.00 2.74
3276 5271 8.424918 TGGAAAAATGATAAACAGCCTTTTACA 58.575 29.630 0.00 0.00 32.22 2.41
3479 5474 5.772825 AAACTTCAGCTGCTATGTTTTGA 57.227 34.783 9.47 2.21 0.00 2.69
3481 5476 5.048013 GGGTAAACTTCAGCTGCTATGTTTT 60.048 40.000 22.26 14.05 0.00 2.43
3543 5538 3.199508 ACAAGAGCATAGACAGAGGCAAT 59.800 43.478 0.00 0.00 0.00 3.56
3544 5539 2.568956 ACAAGAGCATAGACAGAGGCAA 59.431 45.455 0.00 0.00 0.00 4.52
3545 5540 2.167281 GACAAGAGCATAGACAGAGGCA 59.833 50.000 0.00 0.00 0.00 4.75
3588 5583 3.442273 GTGAACAAACAACTCCCTTGACA 59.558 43.478 0.00 0.00 33.59 3.58
3631 5627 8.416329 GGACAGAAGATATAACCATTGCAAAAT 58.584 33.333 1.71 0.00 0.00 1.82
3652 5648 7.500992 TCTGCTATTGGTAAAATAGAGGACAG 58.499 38.462 8.86 6.67 33.22 3.51
3678 5674 2.954989 TGTTTTAATGTGCCAGTGCTGA 59.045 40.909 0.02 0.00 38.71 4.26
3877 5881 3.119173 GGGCAAAATAATGCTGCAGTGTA 60.119 43.478 16.64 5.62 45.68 2.90
3946 5950 4.988029 ACCTGCTAGTACCATCTACTAGG 58.012 47.826 13.80 5.39 44.29 3.02
3998 6002 2.039418 GCCCCAACTGAGAACCTTTTT 58.961 47.619 0.00 0.00 0.00 1.94
3999 6003 1.217942 AGCCCCAACTGAGAACCTTTT 59.782 47.619 0.00 0.00 0.00 2.27
4000 6004 0.853530 AGCCCCAACTGAGAACCTTT 59.146 50.000 0.00 0.00 0.00 3.11
4001 6005 1.742308 TAGCCCCAACTGAGAACCTT 58.258 50.000 0.00 0.00 0.00 3.50
4002 6006 1.840635 GATAGCCCCAACTGAGAACCT 59.159 52.381 0.00 0.00 0.00 3.50
4003 6007 1.840635 AGATAGCCCCAACTGAGAACC 59.159 52.381 0.00 0.00 0.00 3.62
4004 6008 3.055094 TGAAGATAGCCCCAACTGAGAAC 60.055 47.826 0.00 0.00 0.00 3.01
4005 6009 3.055094 GTGAAGATAGCCCCAACTGAGAA 60.055 47.826 0.00 0.00 0.00 2.87
4006 6010 2.501723 GTGAAGATAGCCCCAACTGAGA 59.498 50.000 0.00 0.00 0.00 3.27
4007 6011 2.503356 AGTGAAGATAGCCCCAACTGAG 59.497 50.000 0.00 0.00 0.00 3.35
4008 6012 2.501723 GAGTGAAGATAGCCCCAACTGA 59.498 50.000 0.00 0.00 0.00 3.41
4009 6013 2.503356 AGAGTGAAGATAGCCCCAACTG 59.497 50.000 0.00 0.00 0.00 3.16
4010 6014 2.503356 CAGAGTGAAGATAGCCCCAACT 59.497 50.000 0.00 0.00 0.00 3.16
4011 6015 2.501723 TCAGAGTGAAGATAGCCCCAAC 59.498 50.000 0.00 0.00 0.00 3.77
4012 6016 2.501723 GTCAGAGTGAAGATAGCCCCAA 59.498 50.000 0.00 0.00 0.00 4.12
4013 6017 2.111384 GTCAGAGTGAAGATAGCCCCA 58.889 52.381 0.00 0.00 0.00 4.96
4014 6018 1.414550 GGTCAGAGTGAAGATAGCCCC 59.585 57.143 0.00 0.00 0.00 5.80
4015 6019 1.414550 GGGTCAGAGTGAAGATAGCCC 59.585 57.143 0.00 0.00 0.00 5.19
4016 6020 2.102252 CAGGGTCAGAGTGAAGATAGCC 59.898 54.545 0.00 0.00 0.00 3.93
4017 6021 2.482839 GCAGGGTCAGAGTGAAGATAGC 60.483 54.545 0.00 0.00 0.00 2.97
4018 6022 3.030291 AGCAGGGTCAGAGTGAAGATAG 58.970 50.000 0.00 0.00 0.00 2.08
4026 6030 3.450457 CAGAAGAATAGCAGGGTCAGAGT 59.550 47.826 0.00 0.00 0.00 3.24
4183 6293 4.469945 ACTGGGTAAACTTCTGCTGCTATA 59.530 41.667 0.00 0.00 0.00 1.31
4188 6298 3.214328 ACAACTGGGTAAACTTCTGCTG 58.786 45.455 0.00 0.00 0.00 4.41
4299 6409 5.948742 AATGAAGGAAAGGGTGAACAAAA 57.051 34.783 0.00 0.00 0.00 2.44
4319 6429 6.605471 TCCATAGCGAACAGATGGTATAAT 57.395 37.500 0.00 0.00 40.90 1.28
4334 6444 3.766591 AGAAGATAGACCCATCCATAGCG 59.233 47.826 0.00 0.00 0.00 4.26
4340 6450 2.158081 AGGGGAGAAGATAGACCCATCC 60.158 54.545 0.00 0.00 43.96 3.51
4341 6451 3.169908 GAGGGGAGAAGATAGACCCATC 58.830 54.545 0.00 0.00 44.05 3.51
4342 6452 2.800788 AGAGGGGAGAAGATAGACCCAT 59.199 50.000 0.00 0.00 43.96 4.00
4343 6453 2.091055 CAGAGGGGAGAAGATAGACCCA 60.091 54.545 0.00 0.00 43.96 4.51
4418 6530 5.067023 TGTTGCATGTTCTGTGTTTGTCATA 59.933 36.000 0.00 0.00 0.00 2.15
4419 6531 4.142204 TGTTGCATGTTCTGTGTTTGTCAT 60.142 37.500 0.00 0.00 0.00 3.06
4420 6532 3.192212 TGTTGCATGTTCTGTGTTTGTCA 59.808 39.130 0.00 0.00 0.00 3.58
4421 6533 3.768406 TGTTGCATGTTCTGTGTTTGTC 58.232 40.909 0.00 0.00 0.00 3.18
4422 6534 3.865011 TGTTGCATGTTCTGTGTTTGT 57.135 38.095 0.00 0.00 0.00 2.83
4423 6535 4.422840 TCTTGTTGCATGTTCTGTGTTTG 58.577 39.130 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.