Multiple sequence alignment - TraesCS3B01G474900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G474900 chr3B 100.000 4315 0 0 1 4315 723509128 723504814 0.000000e+00 7969.0
1 TraesCS3B01G474900 chr3B 80.952 399 76 0 1612 2010 723445400 723445002 2.500000e-82 316.0
2 TraesCS3B01G474900 chr3A 92.041 2802 143 32 1443 4213 683253582 683250830 0.000000e+00 3866.0
3 TraesCS3B01G474900 chr3A 87.043 1150 60 44 303 1375 683254870 683253733 0.000000e+00 1216.0
4 TraesCS3B01G474900 chr3A 78.947 399 84 0 1612 2010 683188768 683188370 5.500000e-69 272.0
5 TraesCS3B01G474900 chr3A 88.832 197 12 1 99 295 683255140 683254954 2.590000e-57 233.0
6 TraesCS3B01G474900 chr3A 93.333 105 2 1 4211 4315 683250798 683250699 2.690000e-32 150.0
7 TraesCS3B01G474900 chr3A 85.714 105 5 3 4216 4315 132776836 132776935 7.630000e-18 102.0
8 TraesCS3B01G474900 chr3A 96.226 53 2 0 4033 4085 716884769 716884821 2.140000e-13 87.9
9 TraesCS3B01G474900 chr3D 93.179 2243 95 25 1441 3655 546477427 546475215 0.000000e+00 3241.0
10 TraesCS3B01G474900 chr3D 91.775 1313 57 20 99 1375 546478876 546477579 0.000000e+00 1779.0
11 TraesCS3B01G474900 chr3D 79.750 400 79 2 1612 2010 546332624 546332226 5.460000e-74 289.0
12 TraesCS3B01G474900 chr4B 97.826 92 2 0 3 94 15931206 15931297 4.470000e-35 159.0
13 TraesCS3B01G474900 chr4B 96.809 94 3 0 1 94 15994636 15994729 1.610000e-34 158.0
14 TraesCS3B01G474900 chr4B 96.809 94 3 0 1 94 16023838 16023931 1.610000e-34 158.0
15 TraesCS3B01G474900 chr4B 90.426 94 4 3 1 94 15965419 15965507 7.580000e-23 119.0
16 TraesCS3B01G474900 chr6B 93.684 95 6 0 1 95 149017656 149017562 4.500000e-30 143.0
17 TraesCS3B01G474900 chr6A 85.849 106 5 3 4215 4315 58747375 58747275 2.120000e-18 104.0
18 TraesCS3B01G474900 chr5B 85.849 106 5 3 4215 4315 101089333 101089233 2.120000e-18 104.0
19 TraesCS3B01G474900 chr2A 85.849 106 5 3 4215 4315 327142327 327142427 2.120000e-18 104.0
20 TraesCS3B01G474900 chr1B 85.849 106 5 3 4215 4315 638552442 638552342 2.120000e-18 104.0
21 TraesCS3B01G474900 chr2D 85.714 105 5 3 4216 4315 253198577 253198478 7.630000e-18 102.0
22 TraesCS3B01G474900 chr1D 85.714 105 5 3 4216 4315 24595114 24595213 7.630000e-18 102.0
23 TraesCS3B01G474900 chr1A 84.906 106 6 3 4215 4315 56507889 56507789 9.880000e-17 99.0
24 TraesCS3B01G474900 chr2B 82.692 104 15 3 1 102 568268702 568268804 5.940000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G474900 chr3B 723504814 723509128 4314 True 7969.00 7969 100.00000 1 4315 1 chr3B.!!$R2 4314
1 TraesCS3B01G474900 chr3A 683250699 683255140 4441 True 1366.25 3866 90.31225 99 4315 4 chr3A.!!$R2 4216
2 TraesCS3B01G474900 chr3D 546475215 546478876 3661 True 2510.00 3241 92.47700 99 3655 2 chr3D.!!$R2 3556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.103208 CAGATAGTCACGCCACTCCC 59.897 60.0 0.00 0.0 0.00 4.30 F
1147 1295 0.110486 GGGGCCTTGTCTTGACTTGA 59.890 55.0 0.84 0.0 0.00 3.02 F
2047 2324 0.038892 CCCTGCTGTTGCACACATTC 60.039 55.0 0.00 0.0 45.31 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1242 1398 0.678950 TGATGCAGGACACGAGACAA 59.321 50.000 0.0 0.0 0.00 3.18 R
2158 2440 1.379044 CTTGATGCCCCACTGTCCC 60.379 63.158 0.0 0.0 0.00 4.46 R
4018 4339 0.108186 GGCTTTGCCCTACCATTTGC 60.108 55.000 0.0 0.0 44.06 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.852091 AACAGTATAAAACTAGCTACAGTACAC 57.148 33.333 0.00 0.00 35.76 2.90
34 35 9.017509 ACAGTATAAAACTAGCTACAGTACACA 57.982 33.333 0.00 0.00 35.76 3.72
35 36 9.850628 CAGTATAAAACTAGCTACAGTACACAA 57.149 33.333 0.00 0.00 35.76 3.33
38 39 8.773404 ATAAAACTAGCTACAGTACACAAAGG 57.227 34.615 0.00 0.00 0.00 3.11
39 40 6.415206 AAACTAGCTACAGTACACAAAGGA 57.585 37.500 0.00 0.00 0.00 3.36
40 41 6.415206 AACTAGCTACAGTACACAAAGGAA 57.585 37.500 0.00 0.00 0.00 3.36
41 42 5.780984 ACTAGCTACAGTACACAAAGGAAC 58.219 41.667 0.00 0.00 0.00 3.62
42 43 4.682778 AGCTACAGTACACAAAGGAACA 57.317 40.909 0.00 0.00 0.00 3.18
43 44 4.377897 AGCTACAGTACACAAAGGAACAC 58.622 43.478 0.00 0.00 0.00 3.32
44 45 4.124238 GCTACAGTACACAAAGGAACACA 58.876 43.478 0.00 0.00 0.00 3.72
45 46 4.211374 GCTACAGTACACAAAGGAACACAG 59.789 45.833 0.00 0.00 0.00 3.66
46 47 2.943033 ACAGTACACAAAGGAACACAGC 59.057 45.455 0.00 0.00 0.00 4.40
47 48 2.290641 CAGTACACAAAGGAACACAGCC 59.709 50.000 0.00 0.00 0.00 4.85
48 49 2.172717 AGTACACAAAGGAACACAGCCT 59.827 45.455 0.00 0.00 37.35 4.58
49 50 1.680338 ACACAAAGGAACACAGCCTC 58.320 50.000 0.00 0.00 33.76 4.70
50 51 1.064758 ACACAAAGGAACACAGCCTCA 60.065 47.619 0.00 0.00 33.76 3.86
51 52 1.334869 CACAAAGGAACACAGCCTCAC 59.665 52.381 0.00 0.00 33.76 3.51
52 53 0.588252 CAAAGGAACACAGCCTCACG 59.412 55.000 0.00 0.00 33.76 4.35
53 54 1.166531 AAAGGAACACAGCCTCACGC 61.167 55.000 0.00 0.00 33.76 5.34
54 55 3.050275 GGAACACAGCCTCACGCC 61.050 66.667 0.00 0.00 38.78 5.68
55 56 3.050275 GAACACAGCCTCACGCCC 61.050 66.667 0.00 0.00 38.78 6.13
56 57 4.643387 AACACAGCCTCACGCCCC 62.643 66.667 0.00 0.00 38.78 5.80
91 92 4.785453 GCCTGGGGCTTGTCTCCG 62.785 72.222 0.80 0.00 46.69 4.63
92 93 4.785453 CCTGGGGCTTGTCTCCGC 62.785 72.222 0.00 0.00 37.10 5.54
93 94 4.785453 CTGGGGCTTGTCTCCGCC 62.785 72.222 0.00 0.00 45.55 6.13
97 98 2.743928 GGCTTGTCTCCGCCAGTG 60.744 66.667 0.00 0.00 45.59 3.66
131 132 3.314541 ACACGTGTCTATCTTCCCAAC 57.685 47.619 17.22 0.00 0.00 3.77
157 158 2.159282 CGTGGTTCAACTACTCGCCTAT 60.159 50.000 2.21 0.00 0.00 2.57
172 173 2.678324 GCCTATTCAGATAGTCACGCC 58.322 52.381 0.00 0.00 34.62 5.68
173 174 2.035961 GCCTATTCAGATAGTCACGCCA 59.964 50.000 0.00 0.00 34.62 5.69
174 175 3.643763 CCTATTCAGATAGTCACGCCAC 58.356 50.000 0.00 0.00 34.62 5.01
175 176 3.319405 CCTATTCAGATAGTCACGCCACT 59.681 47.826 0.00 0.00 34.62 4.00
176 177 2.941453 TTCAGATAGTCACGCCACTC 57.059 50.000 0.00 0.00 0.00 3.51
177 178 1.103803 TCAGATAGTCACGCCACTCC 58.896 55.000 0.00 0.00 0.00 3.85
178 179 0.103208 CAGATAGTCACGCCACTCCC 59.897 60.000 0.00 0.00 0.00 4.30
179 180 1.065928 GATAGTCACGCCACTCCCG 59.934 63.158 0.00 0.00 0.00 5.14
180 181 1.664321 GATAGTCACGCCACTCCCGT 61.664 60.000 0.00 0.00 39.91 5.28
181 182 1.255667 ATAGTCACGCCACTCCCGTT 61.256 55.000 0.00 0.00 36.69 4.44
229 230 2.919229 GCAGAAATGATTTGAGCCGTTG 59.081 45.455 0.00 0.00 0.00 4.10
241 242 3.591835 CCGTTGGTTGCGGCTTGT 61.592 61.111 0.00 0.00 42.82 3.16
318 396 4.482990 CAGCCCCTTGGTATAATTCCATT 58.517 43.478 0.00 0.00 34.75 3.16
371 449 7.235079 TCTTCTAGAGACTTGGAGAAAGAGAA 58.765 38.462 0.00 0.00 39.38 2.87
388 466 5.843019 AGAGAAAGAGGACCCAAATACAA 57.157 39.130 0.00 0.00 0.00 2.41
442 526 8.345565 CAAAATAAATGACTACTACTCCATGCC 58.654 37.037 0.00 0.00 0.00 4.40
474 558 5.045942 GGGAGAAAAAGAGAGAGGACTTGAT 60.046 44.000 0.00 0.00 0.00 2.57
589 686 2.023888 TCACCAAACCTCCCTGGAAAAA 60.024 45.455 0.00 0.00 39.71 1.94
593 690 2.763448 CAAACCTCCCTGGAAAAACACA 59.237 45.455 0.00 0.00 39.71 3.72
598 695 1.388065 CCCTGGAAAAACACACCGCA 61.388 55.000 0.00 0.00 0.00 5.69
672 773 0.773644 AAGGAAAGCCTCAGGAAGCA 59.226 50.000 0.00 0.00 46.28 3.91
682 783 0.987294 TCAGGAAGCAAGAAGAGGGG 59.013 55.000 0.00 0.00 0.00 4.79
684 785 0.178861 AGGAAGCAAGAAGAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
739 841 1.525077 CTCCCCTCCTCGTCTCTCG 60.525 68.421 0.00 0.00 41.41 4.04
842 965 3.155167 CGTAGGACAGGCCCTCCC 61.155 72.222 12.66 5.22 37.74 4.30
1145 1293 0.402121 GAGGGGCCTTGTCTTGACTT 59.598 55.000 0.84 0.00 0.00 3.01
1146 1294 0.111253 AGGGGCCTTGTCTTGACTTG 59.889 55.000 0.84 0.00 0.00 3.16
1147 1295 0.110486 GGGGCCTTGTCTTGACTTGA 59.890 55.000 0.84 0.00 0.00 3.02
1148 1296 1.272147 GGGGCCTTGTCTTGACTTGAT 60.272 52.381 0.84 0.00 0.00 2.57
1150 1298 3.274288 GGGCCTTGTCTTGACTTGATAG 58.726 50.000 0.84 0.00 0.00 2.08
1151 1299 2.680339 GGCCTTGTCTTGACTTGATAGC 59.320 50.000 0.00 0.00 0.00 2.97
1152 1300 2.349886 GCCTTGTCTTGACTTGATAGCG 59.650 50.000 2.35 0.00 0.00 4.26
1154 1302 2.010145 TGTCTTGACTTGATAGCGGC 57.990 50.000 2.35 0.00 0.00 6.53
1169 1324 1.956477 AGCGGCAATCTTTGTCAGTTT 59.044 42.857 1.45 0.00 34.15 2.66
1228 1384 0.380378 TTTGTGCAACTCGAACTGCC 59.620 50.000 14.06 7.58 37.79 4.85
1241 1397 3.764434 TCGAACTGCCTGATTTCTCTAGT 59.236 43.478 0.00 0.00 0.00 2.57
1242 1398 4.220821 TCGAACTGCCTGATTTCTCTAGTT 59.779 41.667 0.00 0.00 0.00 2.24
1246 1402 5.241662 ACTGCCTGATTTCTCTAGTTTGTC 58.758 41.667 0.00 0.00 0.00 3.18
1261 1417 0.678950 TTGTCTCGTGTCCTGCATCA 59.321 50.000 0.00 0.00 0.00 3.07
1264 1420 0.390340 TCTCGTGTCCTGCATCAAGC 60.390 55.000 0.00 0.00 45.96 4.01
1293 1450 2.226962 AGACAGCATTTTGGGCATCT 57.773 45.000 0.00 0.00 0.00 2.90
1295 1452 2.901839 AGACAGCATTTTGGGCATCTTT 59.098 40.909 0.00 0.00 0.00 2.52
1299 1456 5.807909 ACAGCATTTTGGGCATCTTTTATT 58.192 33.333 0.00 0.00 0.00 1.40
1303 1460 6.383726 AGCATTTTGGGCATCTTTTATTAGGA 59.616 34.615 0.00 0.00 0.00 2.94
1304 1461 6.703165 GCATTTTGGGCATCTTTTATTAGGAG 59.297 38.462 0.00 0.00 0.00 3.69
1407 1626 9.052759 TCTAGTTTCTGGTTCAATTCAAACTAC 57.947 33.333 0.00 0.00 35.99 2.73
1408 1627 7.881775 AGTTTCTGGTTCAATTCAAACTACT 57.118 32.000 0.00 0.00 33.39 2.57
1541 1818 7.828717 TCCTTTCAATCAAAGTGCTATGTGATA 59.171 33.333 0.00 0.00 40.15 2.15
1686 1963 3.974642 AGGTGTTTATCTATGACCTCCCC 59.025 47.826 0.00 0.00 30.98 4.81
1749 2026 2.593148 AACCACATGTTCGCCGCA 60.593 55.556 0.00 0.00 28.45 5.69
1851 2128 1.226888 GTACCCGACATGCGACCTC 60.227 63.158 10.48 0.00 44.57 3.85
1854 2131 2.509336 CCGACATGCGACCTCACC 60.509 66.667 10.48 0.00 44.57 4.02
1857 2134 4.082523 ACATGCGACCTCACCCCG 62.083 66.667 0.00 0.00 0.00 5.73
2030 2307 2.440409 ACAGACACATGAGCAAATCCC 58.560 47.619 0.00 0.00 0.00 3.85
2039 2316 4.584688 GCAAATCCCTGCTGTTGC 57.415 55.556 1.83 1.83 39.34 4.17
2041 2318 0.668401 GCAAATCCCTGCTGTTGCAC 60.668 55.000 10.48 0.00 45.31 4.57
2042 2319 0.675083 CAAATCCCTGCTGTTGCACA 59.325 50.000 0.00 0.00 45.31 4.57
2043 2320 0.675633 AAATCCCTGCTGTTGCACAC 59.324 50.000 0.00 0.00 45.31 3.82
2044 2321 0.467844 AATCCCTGCTGTTGCACACA 60.468 50.000 0.00 0.00 45.31 3.72
2045 2322 0.251474 ATCCCTGCTGTTGCACACAT 60.251 50.000 0.00 0.00 45.31 3.21
2046 2323 0.467844 TCCCTGCTGTTGCACACATT 60.468 50.000 0.00 0.00 45.31 2.71
2047 2324 0.038892 CCCTGCTGTTGCACACATTC 60.039 55.000 0.00 0.00 45.31 2.67
2048 2325 0.956633 CCTGCTGTTGCACACATTCT 59.043 50.000 0.00 0.00 45.31 2.40
2049 2326 1.068748 CCTGCTGTTGCACACATTCTC 60.069 52.381 0.00 0.00 45.31 2.87
2050 2327 1.605232 CTGCTGTTGCACACATTCTCA 59.395 47.619 0.00 0.00 45.31 3.27
2051 2328 1.605232 TGCTGTTGCACACATTCTCAG 59.395 47.619 0.00 0.00 45.31 3.35
2052 2329 1.875514 GCTGTTGCACACATTCTCAGA 59.124 47.619 0.00 0.00 39.41 3.27
2053 2330 2.486982 GCTGTTGCACACATTCTCAGAT 59.513 45.455 0.00 0.00 39.41 2.90
2054 2331 3.057736 GCTGTTGCACACATTCTCAGATT 60.058 43.478 0.00 0.00 39.41 2.40
2055 2332 4.720090 CTGTTGCACACATTCTCAGATTC 58.280 43.478 0.00 0.00 33.76 2.52
2056 2333 4.392047 TGTTGCACACATTCTCAGATTCT 58.608 39.130 0.00 0.00 0.00 2.40
2057 2334 4.453478 TGTTGCACACATTCTCAGATTCTC 59.547 41.667 0.00 0.00 0.00 2.87
2091 2373 5.449107 ACTGAACTCTAGACGTTAAGCAA 57.551 39.130 14.59 0.36 0.00 3.91
2125 2407 5.650266 ACTGGAGTACATGTGTTTTGAACAA 59.350 36.000 9.11 0.00 44.16 2.83
2128 2410 6.824196 TGGAGTACATGTGTTTTGAACAACTA 59.176 34.615 9.11 0.00 44.16 2.24
2149 2431 4.942363 AGGGGATATCTAATTGCAGCAT 57.058 40.909 0.00 0.00 0.00 3.79
2150 2432 4.597004 AGGGGATATCTAATTGCAGCATG 58.403 43.478 0.00 0.00 40.87 4.06
2151 2433 3.698040 GGGGATATCTAATTGCAGCATGG 59.302 47.826 0.00 0.00 35.86 3.66
2198 2480 9.013229 TCAAGATGCTAGTTTTATCATTTGTGT 57.987 29.630 0.00 0.00 0.00 3.72
2239 2522 5.529791 TGACTTAAGTACTTCAGTCTGCAC 58.470 41.667 33.76 18.82 41.76 4.57
2245 2528 2.267174 ACTTCAGTCTGCACATGCTT 57.733 45.000 5.31 0.00 42.66 3.91
2281 2564 8.470040 TTCAGATAATGATTTGCTTGCTTTTC 57.530 30.769 0.00 0.00 37.89 2.29
2282 2565 7.833786 TCAGATAATGATTTGCTTGCTTTTCT 58.166 30.769 0.00 0.00 31.12 2.52
2283 2566 7.758076 TCAGATAATGATTTGCTTGCTTTTCTG 59.242 33.333 0.00 0.00 31.12 3.02
2284 2567 7.544566 CAGATAATGATTTGCTTGCTTTTCTGT 59.455 33.333 0.00 0.00 0.00 3.41
2285 2568 8.742777 AGATAATGATTTGCTTGCTTTTCTGTA 58.257 29.630 0.00 0.00 0.00 2.74
2286 2569 9.525409 GATAATGATTTGCTTGCTTTTCTGTAT 57.475 29.630 0.00 0.00 0.00 2.29
2366 2649 1.107945 TGCCAATCTGCCATGTCATG 58.892 50.000 5.79 5.79 0.00 3.07
2478 2761 2.814336 GGAAGAGAAAGCAATTGGACGT 59.186 45.455 7.72 0.00 0.00 4.34
2506 2789 4.093952 CCTTGCTTCAGCGTGCCG 62.094 66.667 0.00 0.00 45.83 5.69
2507 2790 3.349006 CTTGCTTCAGCGTGCCGT 61.349 61.111 0.00 0.00 45.83 5.68
2697 2980 1.281960 CGAGGGTGGATACTACGCG 59.718 63.158 3.53 3.53 36.27 6.01
2710 2993 5.174579 GGATACTACGCGAGGTAAATTGTTC 59.825 44.000 15.93 8.17 0.00 3.18
3062 3352 1.003233 GTGTTTGTTCCCGAGGAGGAT 59.997 52.381 0.00 0.00 45.00 3.24
3152 3442 1.269448 GCAAACCCTTCGATGAAGCAA 59.731 47.619 0.00 0.00 38.24 3.91
3155 3445 0.326264 ACCCTTCGATGAAGCAAGCT 59.674 50.000 0.00 0.00 38.24 3.74
3260 3550 0.250338 GTGTCTTCTTGAAGCCCGGT 60.250 55.000 0.00 0.00 0.00 5.28
3284 3574 1.374758 CCGTCTGAACTGGACTGCC 60.375 63.158 0.00 0.00 0.00 4.85
3429 3719 2.268762 TGCACAGTGCTGACCATAAA 57.731 45.000 25.83 0.00 45.31 1.40
3443 3733 7.141363 GCTGACCATAAATCAAATGTACATCC 58.859 38.462 9.23 0.00 0.00 3.51
3496 3789 8.268878 AGTATACCATAGAGCTTCATCCTTTT 57.731 34.615 0.00 0.00 0.00 2.27
3498 3791 8.994170 GTATACCATAGAGCTTCATCCTTTTTC 58.006 37.037 0.00 0.00 0.00 2.29
3545 3858 2.420628 AATGTGTCAACCATTGTGCG 57.579 45.000 0.00 0.00 31.52 5.34
3553 3866 1.932511 CAACCATTGTGCGCTTTGTTT 59.067 42.857 9.73 0.00 0.00 2.83
3602 3915 5.828299 TTGCAAGATTTAAACCCTATCGG 57.172 39.130 0.00 0.00 37.81 4.18
3644 3964 1.063616 CATGCTTGCGATCTCCAGTTG 59.936 52.381 0.00 0.00 0.00 3.16
3647 3967 0.994995 CTTGCGATCTCCAGTTGTCG 59.005 55.000 0.00 0.00 37.17 4.35
3693 4013 4.453480 TTTCATCCCCTCTCTGTTTTGT 57.547 40.909 0.00 0.00 0.00 2.83
3723 4043 5.954296 CTGATGAACAGGTGAGAAATTGT 57.046 39.130 0.00 0.00 42.39 2.71
3724 4044 5.936054 CTGATGAACAGGTGAGAAATTGTC 58.064 41.667 0.00 0.00 42.39 3.18
3727 4047 5.499139 TGAACAGGTGAGAAATTGTCAAC 57.501 39.130 0.00 0.00 31.20 3.18
3729 4049 5.296780 TGAACAGGTGAGAAATTGTCAACTC 59.703 40.000 7.78 0.00 40.11 3.01
3730 4050 4.137543 ACAGGTGAGAAATTGTCAACTCC 58.862 43.478 7.78 0.00 40.11 3.85
3765 4085 3.554716 TCCCATCTGGATCAGCCG 58.445 61.111 0.00 0.00 38.61 5.52
3780 4100 1.160329 AGCCGTGTCAGTTTGAGTGC 61.160 55.000 0.00 0.00 0.00 4.40
3781 4101 1.160329 GCCGTGTCAGTTTGAGTGCT 61.160 55.000 0.00 0.00 0.00 4.40
3792 4112 0.178992 TTGAGTGCTTGGGGACTTGG 60.179 55.000 0.00 0.00 44.07 3.61
3794 4114 1.774217 AGTGCTTGGGGACTTGGGA 60.774 57.895 0.00 0.00 41.32 4.37
3800 4120 3.256960 GGGGACTTGGGAGTGGCA 61.257 66.667 0.00 0.00 35.88 4.92
3805 4125 2.369394 GGACTTGGGAGTGGCAATTAG 58.631 52.381 0.00 0.00 35.88 1.73
3811 4131 2.308570 TGGGAGTGGCAATTAGTCATGT 59.691 45.455 0.00 0.00 32.25 3.21
3812 4132 3.521531 TGGGAGTGGCAATTAGTCATGTA 59.478 43.478 0.00 0.00 32.25 2.29
3813 4133 3.877508 GGGAGTGGCAATTAGTCATGTAC 59.122 47.826 0.00 0.00 32.25 2.90
3835 4155 5.308825 ACTAGCTGCAGTCTTTGTGTAAAT 58.691 37.500 16.64 0.00 0.00 1.40
3836 4156 6.464222 ACTAGCTGCAGTCTTTGTGTAAATA 58.536 36.000 16.64 0.00 0.00 1.40
3837 4157 7.106239 ACTAGCTGCAGTCTTTGTGTAAATAT 58.894 34.615 16.64 0.00 0.00 1.28
3838 4158 8.258007 ACTAGCTGCAGTCTTTGTGTAAATATA 58.742 33.333 16.64 0.00 0.00 0.86
3839 4159 9.265901 CTAGCTGCAGTCTTTGTGTAAATATAT 57.734 33.333 16.64 0.00 0.00 0.86
3881 4202 0.850856 GTTCAGACGTGTGACCGAAC 59.149 55.000 15.88 7.19 0.00 3.95
3891 4212 1.098712 GTGACCGAACTGGCCAACAA 61.099 55.000 7.01 0.00 43.94 2.83
3921 4242 4.908601 TGGCTCTTCTGAAGTTTGGATA 57.091 40.909 16.43 0.00 0.00 2.59
3925 4246 4.819088 GCTCTTCTGAAGTTTGGATATCCC 59.181 45.833 19.34 3.83 34.29 3.85
3928 4249 2.503765 TCTGAAGTTTGGATATCCCGCA 59.496 45.455 19.34 7.11 37.93 5.69
3929 4250 2.874701 CTGAAGTTTGGATATCCCGCAG 59.125 50.000 19.34 12.27 37.93 5.18
3930 4251 1.604278 GAAGTTTGGATATCCCGCAGC 59.396 52.381 19.34 5.48 37.93 5.25
3931 4252 0.179018 AGTTTGGATATCCCGCAGCC 60.179 55.000 19.34 1.56 37.93 4.85
3934 4255 2.359230 GGATATCCCGCAGCCTGC 60.359 66.667 11.02 6.63 40.69 4.85
3935 4256 2.746359 GATATCCCGCAGCCTGCT 59.254 61.111 15.80 0.00 42.25 4.24
3970 4291 2.053618 GACTCCAGCAGTCCACAGT 58.946 57.895 0.00 0.00 45.47 3.55
3971 4292 0.394565 GACTCCAGCAGTCCACAGTT 59.605 55.000 0.00 0.00 45.47 3.16
3972 4293 0.394565 ACTCCAGCAGTCCACAGTTC 59.605 55.000 0.00 0.00 0.00 3.01
3973 4294 0.683973 CTCCAGCAGTCCACAGTTCT 59.316 55.000 0.00 0.00 0.00 3.01
3974 4295 1.895798 CTCCAGCAGTCCACAGTTCTA 59.104 52.381 0.00 0.00 0.00 2.10
3975 4296 1.618837 TCCAGCAGTCCACAGTTCTAC 59.381 52.381 0.00 0.00 0.00 2.59
3976 4297 1.344438 CCAGCAGTCCACAGTTCTACA 59.656 52.381 0.00 0.00 0.00 2.74
3984 4305 3.767673 GTCCACAGTTCTACACCCATCTA 59.232 47.826 0.00 0.00 0.00 1.98
4001 4322 0.751643 CTAAATGGGCCGGGGTGAAG 60.752 60.000 2.18 0.00 0.00 3.02
4018 4339 1.003696 GAAGGTTGTCCAAGGGGAGAG 59.996 57.143 0.00 0.00 46.12 3.20
4121 4442 0.734942 CGACCGTGTATCCGCTGTTT 60.735 55.000 0.00 0.00 0.00 2.83
4128 4449 0.179054 GTATCCGCTGTTTCCCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
4131 4452 2.294078 CCGCTGTTTCCCCCTCTCT 61.294 63.158 0.00 0.00 0.00 3.10
4168 4489 2.110006 GCGGGGAGAAGCAGATCC 59.890 66.667 0.00 0.00 34.64 3.36
4205 4533 2.794981 CGAGCACACGAGGTAAATCGAT 60.795 50.000 2.78 0.00 45.56 3.59
4245 4607 0.460284 CTCTGTTTAGGCGCCACGAT 60.460 55.000 31.54 10.73 0.00 3.73
4254 4616 2.584418 CGCCACGATGGAGCTCTG 60.584 66.667 14.64 3.10 40.96 3.35
4255 4617 2.895680 GCCACGATGGAGCTCTGA 59.104 61.111 14.64 0.55 40.96 3.27
4256 4618 1.219124 GCCACGATGGAGCTCTGAA 59.781 57.895 14.64 0.00 40.96 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.852091 GTGTACTGTAGCTAGTTTTATACTGTT 57.148 33.333 0.00 0.00 37.73 3.16
8 9 9.017509 TGTGTACTGTAGCTAGTTTTATACTGT 57.982 33.333 0.00 0.00 37.73 3.55
9 10 9.850628 TTGTGTACTGTAGCTAGTTTTATACTG 57.149 33.333 0.00 0.00 37.73 2.74
12 13 9.865321 CCTTTGTGTACTGTAGCTAGTTTTATA 57.135 33.333 0.00 0.00 32.19 0.98
13 14 8.591072 TCCTTTGTGTACTGTAGCTAGTTTTAT 58.409 33.333 0.00 0.00 32.19 1.40
14 15 7.954835 TCCTTTGTGTACTGTAGCTAGTTTTA 58.045 34.615 0.00 0.00 32.19 1.52
15 16 6.823497 TCCTTTGTGTACTGTAGCTAGTTTT 58.177 36.000 0.00 0.00 32.19 2.43
16 17 6.415206 TCCTTTGTGTACTGTAGCTAGTTT 57.585 37.500 0.00 0.00 32.19 2.66
17 18 6.183360 TGTTCCTTTGTGTACTGTAGCTAGTT 60.183 38.462 0.00 0.00 32.19 2.24
18 19 5.303589 TGTTCCTTTGTGTACTGTAGCTAGT 59.696 40.000 0.00 0.00 34.71 2.57
19 20 5.634020 GTGTTCCTTTGTGTACTGTAGCTAG 59.366 44.000 0.00 0.00 0.00 3.42
20 21 5.069383 TGTGTTCCTTTGTGTACTGTAGCTA 59.931 40.000 0.00 0.00 0.00 3.32
21 22 4.141801 TGTGTTCCTTTGTGTACTGTAGCT 60.142 41.667 0.00 0.00 0.00 3.32
22 23 4.124238 TGTGTTCCTTTGTGTACTGTAGC 58.876 43.478 0.00 0.00 0.00 3.58
23 24 4.211374 GCTGTGTTCCTTTGTGTACTGTAG 59.789 45.833 0.00 0.00 0.00 2.74
24 25 4.124238 GCTGTGTTCCTTTGTGTACTGTA 58.876 43.478 0.00 0.00 0.00 2.74
25 26 2.943033 GCTGTGTTCCTTTGTGTACTGT 59.057 45.455 0.00 0.00 0.00 3.55
26 27 2.290641 GGCTGTGTTCCTTTGTGTACTG 59.709 50.000 0.00 0.00 0.00 2.74
27 28 2.172717 AGGCTGTGTTCCTTTGTGTACT 59.827 45.455 0.00 0.00 0.00 2.73
28 29 2.548480 GAGGCTGTGTTCCTTTGTGTAC 59.452 50.000 0.00 0.00 33.24 2.90
29 30 2.171659 TGAGGCTGTGTTCCTTTGTGTA 59.828 45.455 0.00 0.00 33.24 2.90
30 31 1.064758 TGAGGCTGTGTTCCTTTGTGT 60.065 47.619 0.00 0.00 33.24 3.72
31 32 1.334869 GTGAGGCTGTGTTCCTTTGTG 59.665 52.381 0.00 0.00 33.24 3.33
32 33 1.680338 GTGAGGCTGTGTTCCTTTGT 58.320 50.000 0.00 0.00 33.24 2.83
33 34 0.588252 CGTGAGGCTGTGTTCCTTTG 59.412 55.000 0.00 0.00 33.24 2.77
34 35 1.166531 GCGTGAGGCTGTGTTCCTTT 61.167 55.000 0.00 0.00 39.11 3.11
35 36 1.598130 GCGTGAGGCTGTGTTCCTT 60.598 57.895 0.00 0.00 39.11 3.36
36 37 2.031163 GCGTGAGGCTGTGTTCCT 59.969 61.111 0.00 0.00 39.11 3.36
75 76 4.785453 GCGGAGACAAGCCCCAGG 62.785 72.222 0.00 0.00 0.00 4.45
85 86 0.179124 GAGTCATCACTGGCGGAGAC 60.179 60.000 0.00 2.69 30.63 3.36
86 87 0.611896 TGAGTCATCACTGGCGGAGA 60.612 55.000 0.00 0.00 30.63 3.71
87 88 1.893062 TGAGTCATCACTGGCGGAG 59.107 57.895 0.00 0.00 30.63 4.63
88 89 4.111967 TGAGTCATCACTGGCGGA 57.888 55.556 0.00 0.00 30.63 5.54
96 97 1.066454 ACGTGTTGTCGTGAGTCATCA 59.934 47.619 0.00 0.00 42.56 3.07
97 98 1.767289 ACGTGTTGTCGTGAGTCATC 58.233 50.000 0.00 0.00 42.56 2.92
131 132 2.735478 TAGTTGAACCACGCGGCG 60.735 61.111 22.36 22.36 34.57 6.46
157 158 1.476891 GGAGTGGCGTGACTATCTGAA 59.523 52.381 0.00 0.00 0.00 3.02
172 173 2.095978 AACGGGAGTGAACGGGAGTG 62.096 60.000 0.00 0.00 44.09 3.51
173 174 1.813728 GAACGGGAGTGAACGGGAGT 61.814 60.000 0.00 0.00 46.69 3.85
174 175 1.080025 GAACGGGAGTGAACGGGAG 60.080 63.158 0.00 0.00 46.69 4.30
175 176 2.922950 CGAACGGGAGTGAACGGGA 61.923 63.158 0.00 0.00 46.69 5.14
176 177 2.431942 CGAACGGGAGTGAACGGG 60.432 66.667 0.00 0.00 46.69 5.28
177 178 3.110178 GCGAACGGGAGTGAACGG 61.110 66.667 0.00 0.00 46.69 4.44
178 179 3.110178 GGCGAACGGGAGTGAACG 61.110 66.667 0.00 0.00 46.69 3.95
179 180 2.741211 GGGCGAACGGGAGTGAAC 60.741 66.667 0.00 0.00 46.69 3.18
180 181 2.920912 AGGGCGAACGGGAGTGAA 60.921 61.111 0.00 0.00 46.69 3.18
181 182 3.379445 GAGGGCGAACGGGAGTGA 61.379 66.667 0.00 0.00 46.69 3.41
229 230 2.335011 GTTCCACAAGCCGCAACC 59.665 61.111 0.00 0.00 0.00 3.77
255 256 2.435410 CGCCCGGTGGAAGGTAAC 60.435 66.667 0.00 0.00 0.00 2.50
256 257 4.397832 GCGCCCGGTGGAAGGTAA 62.398 66.667 0.00 0.00 0.00 2.85
301 378 6.314120 TGGGATGAATGGAATTATACCAAGG 58.686 40.000 0.00 0.00 40.93 3.61
318 396 5.421374 TGTAATTGATTTGCACATGGGATGA 59.579 36.000 0.00 0.00 0.00 2.92
426 504 4.737855 TCTTTGGCATGGAGTAGTAGTC 57.262 45.455 0.00 0.00 0.00 2.59
436 520 2.148446 TCTCCCATTCTTTGGCATGG 57.852 50.000 0.00 0.00 44.97 3.66
442 526 6.150809 CCTCTCTCTTTTTCTCCCATTCTTTG 59.849 42.308 0.00 0.00 0.00 2.77
451 535 5.476091 TCAAGTCCTCTCTCTTTTTCTCC 57.524 43.478 0.00 0.00 0.00 3.71
453 537 7.790782 ACTATCAAGTCCTCTCTCTTTTTCT 57.209 36.000 0.00 0.00 0.00 2.52
474 558 6.183361 TGTCCTCACCTTAAACATGTCAACTA 60.183 38.462 0.00 0.00 0.00 2.24
589 686 3.196901 TGGATTAGTCTAATGCGGTGTGT 59.803 43.478 16.56 0.00 39.08 3.72
593 690 3.243907 GCTCTGGATTAGTCTAATGCGGT 60.244 47.826 24.34 0.00 41.78 5.68
598 695 5.716979 TGTAGGGCTCTGGATTAGTCTAAT 58.283 41.667 4.71 4.71 0.00 1.73
663 764 0.987294 CCCCTCTTCTTGCTTCCTGA 59.013 55.000 0.00 0.00 0.00 3.86
672 773 0.800239 TTCCCTCTCCCCCTCTTCTT 59.200 55.000 0.00 0.00 0.00 2.52
682 783 0.105778 CGGCTGATTCTTCCCTCTCC 59.894 60.000 0.00 0.00 0.00 3.71
684 785 1.524482 GCGGCTGATTCTTCCCTCT 59.476 57.895 0.00 0.00 0.00 3.69
716 817 4.400251 ACGAGGAGGGGAGGGTGG 62.400 72.222 0.00 0.00 0.00 4.61
739 841 1.425448 AGGGGATTAATACTGCTGGCC 59.575 52.381 0.00 0.00 0.00 5.36
981 1116 1.760086 CCTCTCGATCCCCAGCACT 60.760 63.158 0.00 0.00 0.00 4.40
1056 1200 3.879351 CTCCGCCGCAACAAACAGC 62.879 63.158 0.00 0.00 0.00 4.40
1145 1293 2.938451 CTGACAAAGATTGCCGCTATCA 59.062 45.455 15.73 0.00 0.00 2.15
1146 1294 2.939103 ACTGACAAAGATTGCCGCTATC 59.061 45.455 6.70 6.70 0.00 2.08
1147 1295 2.991250 ACTGACAAAGATTGCCGCTAT 58.009 42.857 0.00 0.00 0.00 2.97
1148 1296 2.472695 ACTGACAAAGATTGCCGCTA 57.527 45.000 0.00 0.00 0.00 4.26
1150 1298 2.422276 AAACTGACAAAGATTGCCGC 57.578 45.000 0.00 0.00 0.00 6.53
1195 1351 2.361757 TGCACAAACTGACAAGATTGGG 59.638 45.455 0.00 0.00 41.33 4.12
1228 1384 6.153067 ACACGAGACAAACTAGAGAAATCAG 58.847 40.000 0.00 0.00 0.00 2.90
1241 1397 1.069978 TGATGCAGGACACGAGACAAA 59.930 47.619 0.00 0.00 0.00 2.83
1242 1398 0.678950 TGATGCAGGACACGAGACAA 59.321 50.000 0.00 0.00 0.00 3.18
1246 1402 2.084844 GCTTGATGCAGGACACGAG 58.915 57.895 0.00 0.00 42.31 4.18
1286 1443 7.404671 TGAAAACTCCTAATAAAAGATGCCC 57.595 36.000 0.00 0.00 0.00 5.36
1299 1456 9.739276 ACAGACAATCAAATATGAAAACTCCTA 57.261 29.630 0.00 0.00 39.49 2.94
1303 1460 8.181904 ACCACAGACAATCAAATATGAAAACT 57.818 30.769 0.00 0.00 39.49 2.66
1304 1461 8.816640 AACCACAGACAATCAAATATGAAAAC 57.183 30.769 0.00 0.00 39.49 2.43
1321 1479 2.409064 TGGGGAAGTCTAACCACAGA 57.591 50.000 0.00 0.00 34.41 3.41
1356 1514 8.071177 ACAAATTATCTGATTCTGAAAAGGGG 57.929 34.615 0.00 0.00 0.00 4.79
1425 1644 6.718454 GCAAGGTGCTAATATCATCTGTAG 57.282 41.667 0.00 0.00 40.96 2.74
1489 1766 9.780186 ATTGTATATTAAGCAAGGTCTAACTCC 57.220 33.333 0.00 0.00 0.00 3.85
1541 1818 9.686683 AAAGAATATACCAAGCTTGATAACAGT 57.313 29.630 28.05 17.12 0.00 3.55
1686 1963 3.914364 GCAGCTTCTTGTTGTATTTTCCG 59.086 43.478 0.00 0.00 0.00 4.30
1749 2026 1.198713 ACCGGTGCATGAAGATCTCT 58.801 50.000 6.12 0.00 0.00 3.10
1794 2071 1.325355 CCGCTTCCTCGGGATTAGTA 58.675 55.000 0.00 0.00 45.38 1.82
2077 2359 9.136952 AGTACTAAACAATTGCTTAACGTCTAG 57.863 33.333 5.05 0.00 0.00 2.43
2082 2364 7.095355 ACTCCAGTACTAAACAATTGCTTAACG 60.095 37.037 5.05 0.00 0.00 3.18
2125 2407 4.846367 TGCTGCAATTAGATATCCCCTAGT 59.154 41.667 0.00 0.00 0.00 2.57
2128 2410 4.569228 CCATGCTGCAATTAGATATCCCCT 60.569 45.833 6.36 0.00 0.00 4.79
2149 2431 2.605607 CCACTGTCCCCATGCTCCA 61.606 63.158 0.00 0.00 0.00 3.86
2150 2432 2.273449 CCACTGTCCCCATGCTCC 59.727 66.667 0.00 0.00 0.00 4.70
2151 2433 2.273449 CCCACTGTCCCCATGCTC 59.727 66.667 0.00 0.00 0.00 4.26
2158 2440 1.379044 CTTGATGCCCCACTGTCCC 60.379 63.158 0.00 0.00 0.00 4.46
2188 2470 6.297080 TGCCCATTCATAAACACAAATGAT 57.703 33.333 0.00 0.00 32.40 2.45
2190 2472 5.933463 AGTTGCCCATTCATAAACACAAATG 59.067 36.000 0.00 0.00 0.00 2.32
2191 2473 6.014327 AGAGTTGCCCATTCATAAACACAAAT 60.014 34.615 0.00 0.00 0.00 2.32
2192 2474 5.304101 AGAGTTGCCCATTCATAAACACAAA 59.696 36.000 0.00 0.00 0.00 2.83
2195 2477 4.458989 TCAGAGTTGCCCATTCATAAACAC 59.541 41.667 0.00 0.00 0.00 3.32
2196 2478 4.458989 GTCAGAGTTGCCCATTCATAAACA 59.541 41.667 0.00 0.00 0.00 2.83
2197 2479 4.702131 AGTCAGAGTTGCCCATTCATAAAC 59.298 41.667 0.00 0.00 0.00 2.01
2198 2480 4.922206 AGTCAGAGTTGCCCATTCATAAA 58.078 39.130 0.00 0.00 0.00 1.40
2203 2486 4.327680 ACTTAAGTCAGAGTTGCCCATTC 58.672 43.478 1.12 0.00 0.00 2.67
2239 2522 4.935702 TCTGAAACAAAGGACAAAGCATG 58.064 39.130 0.00 0.00 0.00 4.06
2245 2528 9.695526 CAAATCATTATCTGAAACAAAGGACAA 57.304 29.630 0.00 0.00 37.44 3.18
2586 2869 7.603784 GGAATAAGGTGATTTTGCATTTTCTGT 59.396 33.333 0.00 0.00 0.00 3.41
2697 2980 6.780706 TTTCGACAGAGAACAATTTACCTC 57.219 37.500 0.00 0.00 0.00 3.85
2710 2993 6.024049 GGACTAATTGCATTTTTCGACAGAG 58.976 40.000 0.00 0.00 0.00 3.35
3152 3442 1.918253 CTGGGGGAACAGCATAGCT 59.082 57.895 0.00 0.00 40.77 3.32
3260 3550 2.583441 CCAGTTCAGACGGGCCTGA 61.583 63.158 21.41 2.74 41.06 3.86
3302 3592 2.559440 GAGAGATGCTACCAAGGCTTG 58.441 52.381 20.31 20.31 0.00 4.01
3308 3598 1.269257 CGATGCGAGAGATGCTACCAA 60.269 52.381 0.00 0.00 0.00 3.67
3602 3915 1.779569 CCGGTATAACATCAGACGGC 58.220 55.000 0.00 0.00 33.01 5.68
3713 4033 3.819368 TGCAGGAGTTGACAATTTCTCA 58.181 40.909 6.62 0.00 0.00 3.27
3750 4070 0.531532 GACACGGCTGATCCAGATGG 60.532 60.000 0.00 0.00 32.44 3.51
3761 4081 1.160329 GCACTCAAACTGACACGGCT 61.160 55.000 0.00 0.00 0.00 5.52
3762 4082 1.160329 AGCACTCAAACTGACACGGC 61.160 55.000 0.00 0.00 0.00 5.68
3763 4083 1.003545 CAAGCACTCAAACTGACACGG 60.004 52.381 0.00 0.00 0.00 4.94
3764 4084 1.003545 CCAAGCACTCAAACTGACACG 60.004 52.381 0.00 0.00 0.00 4.49
3765 4085 1.334869 CCCAAGCACTCAAACTGACAC 59.665 52.381 0.00 0.00 0.00 3.67
3780 4100 1.380302 CCACTCCCAAGTCCCCAAG 59.620 63.158 0.00 0.00 31.71 3.61
3781 4101 2.840753 GCCACTCCCAAGTCCCCAA 61.841 63.158 0.00 0.00 31.71 4.12
3792 4112 4.770795 AGTACATGACTAATTGCCACTCC 58.229 43.478 0.00 0.00 36.27 3.85
3794 4114 5.129485 AGCTAGTACATGACTAATTGCCACT 59.871 40.000 0.00 0.00 40.23 4.00
3800 4120 6.097554 AGACTGCAGCTAGTACATGACTAATT 59.902 38.462 15.27 0.00 40.23 1.40
3805 4125 3.791973 AGACTGCAGCTAGTACATGAC 57.208 47.619 15.27 0.00 0.00 3.06
3811 4131 5.462530 TTACACAAAGACTGCAGCTAGTA 57.537 39.130 15.27 10.08 0.00 1.82
3812 4132 2.918712 ACACAAAGACTGCAGCTAGT 57.081 45.000 15.27 11.16 0.00 2.57
3813 4133 5.869753 ATTTACACAAAGACTGCAGCTAG 57.130 39.130 15.27 10.57 0.00 3.42
3837 4157 9.866655 ACATTATTCCTTAGGAAATCAGCAATA 57.133 29.630 18.34 0.24 45.41 1.90
3838 4158 8.773033 ACATTATTCCTTAGGAAATCAGCAAT 57.227 30.769 18.34 7.84 45.41 3.56
3839 4159 8.593945 AACATTATTCCTTAGGAAATCAGCAA 57.406 30.769 18.34 6.00 45.41 3.91
3881 4202 3.993382 ACAAGCATTTGTTGGCCAG 57.007 47.368 5.11 0.00 45.01 4.85
3891 4212 2.867624 TCAGAAGAGCCAACAAGCATT 58.132 42.857 0.00 0.00 34.23 3.56
3931 4252 2.674380 GGTTCCCCTGTGCAGCAG 60.674 66.667 0.00 8.73 44.63 4.24
3934 4255 1.601759 CTGTGGTTCCCCTGTGCAG 60.602 63.158 0.00 0.00 0.00 4.41
3935 4256 2.075566 TCTGTGGTTCCCCTGTGCA 61.076 57.895 0.00 0.00 0.00 4.57
3939 4260 1.127567 TGGAGTCTGTGGTTCCCCTG 61.128 60.000 0.00 0.00 0.00 4.45
3944 4265 0.394565 ACTGCTGGAGTCTGTGGTTC 59.605 55.000 0.00 0.00 0.00 3.62
3959 4280 1.608283 GGGTGTAGAACTGTGGACTGC 60.608 57.143 0.00 0.00 0.00 4.40
3984 4305 2.037208 CTTCACCCCGGCCCATTT 59.963 61.111 0.00 0.00 0.00 2.32
3993 4314 0.539669 CCTTGGACAACCTTCACCCC 60.540 60.000 0.00 0.00 37.04 4.95
4001 4322 1.002011 GCTCTCCCCTTGGACAACC 60.002 63.158 0.00 0.00 35.03 3.77
4018 4339 0.108186 GGCTTTGCCCTACCATTTGC 60.108 55.000 0.00 0.00 44.06 3.68
4108 4429 0.912487 AGGGGGAAACAGCGGATACA 60.912 55.000 0.00 0.00 0.00 2.29
4109 4430 0.179054 GAGGGGGAAACAGCGGATAC 60.179 60.000 0.00 0.00 0.00 2.24
4110 4431 0.326238 AGAGGGGGAAACAGCGGATA 60.326 55.000 0.00 0.00 0.00 2.59
4121 4442 1.783708 TGAAGAGCAGAGAGGGGGA 59.216 57.895 0.00 0.00 0.00 4.81
4245 4607 2.700371 TCTGTTTCAGTTCAGAGCTCCA 59.300 45.455 10.93 0.00 36.04 3.86
4252 4614 2.547211 CAGCCACTCTGTTTCAGTTCAG 59.453 50.000 0.00 0.00 38.02 3.02
4253 4615 2.564771 CAGCCACTCTGTTTCAGTTCA 58.435 47.619 0.00 0.00 38.02 3.18
4254 4616 1.265365 GCAGCCACTCTGTTTCAGTTC 59.735 52.381 0.00 0.00 44.66 3.01
4255 4617 1.312815 GCAGCCACTCTGTTTCAGTT 58.687 50.000 0.00 0.00 44.66 3.16
4256 4618 0.536006 GGCAGCCACTCTGTTTCAGT 60.536 55.000 6.55 0.00 44.66 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.