Multiple sequence alignment - TraesCS3B01G474700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G474700 chr3B 100.000 3584 0 0 1 3584 723498786 723502369 0.000000e+00 6619.0
1 TraesCS3B01G474700 chr3B 96.154 130 5 0 2783 2912 727419472 727419343 2.800000e-51 213.0
2 TraesCS3B01G474700 chr3B 94.245 139 5 2 2779 2917 692220694 692220559 3.630000e-50 209.0
3 TraesCS3B01G474700 chr3D 94.836 2827 83 15 1 2785 546468122 546470927 0.000000e+00 4353.0
4 TraesCS3B01G474700 chr3D 97.810 548 9 3 2908 3455 546470925 546471469 0.000000e+00 942.0
5 TraesCS3B01G474700 chr3D 91.667 144 12 0 2784 2927 448736473 448736616 2.180000e-47 200.0
6 TraesCS3B01G474700 chr3A 95.015 2026 64 11 1 1990 683238364 683240388 0.000000e+00 3147.0
7 TraesCS3B01G474700 chr3A 96.898 548 15 2 2908 3455 683241734 683242279 0.000000e+00 917.0
8 TraesCS3B01G474700 chr3A 98.394 436 7 0 2350 2785 683241301 683241736 0.000000e+00 767.0
9 TraesCS3B01G474700 chr3A 96.765 340 9 1 1988 2325 683240490 683240829 1.870000e-157 566.0
10 TraesCS3B01G474700 chr3A 92.806 139 7 3 3446 3584 321109097 321109232 7.850000e-47 198.0
11 TraesCS3B01G474700 chr3A 75.706 177 23 12 2783 2956 595764730 595764571 1.790000e-08 71.3
12 TraesCS3B01G474700 chr7A 100.000 135 0 0 3450 3584 299431908 299432042 2.140000e-62 250.0
13 TraesCS3B01G474700 chr7A 90.960 177 13 2 2088 2263 494786991 494786817 5.980000e-58 235.0
14 TraesCS3B01G474700 chr7A 95.556 135 6 0 3450 3584 181708547 181708413 2.170000e-52 217.0
15 TraesCS3B01G474700 chr5A 93.064 173 8 3 2086 2257 320214241 320214410 2.140000e-62 250.0
16 TraesCS3B01G474700 chr5A 92.222 180 8 5 2088 2263 558675659 558675482 2.140000e-62 250.0
17 TraesCS3B01G474700 chr5A 94.118 136 8 0 3449 3584 275091890 275092025 1.300000e-49 207.0
18 TraesCS3B01G474700 chr5D 93.023 172 9 2 2084 2254 204324442 204324611 7.680000e-62 248.0
19 TraesCS3B01G474700 chr4D 92.135 178 9 4 2076 2251 334164378 334164552 2.760000e-61 246.0
20 TraesCS3B01G474700 chr2D 90.960 177 12 3 2086 2261 296364212 296364039 5.980000e-58 235.0
21 TraesCS3B01G474700 chr2D 93.571 140 9 0 2771 2910 450745496 450745635 3.630000e-50 209.0
22 TraesCS3B01G474700 chr2B 91.379 174 11 3 2086 2258 366017516 366017686 5.980000e-58 235.0
23 TraesCS3B01G474700 chr2B 96.970 132 4 0 3453 3584 701771879 701771748 4.660000e-54 222.0
24 TraesCS3B01G474700 chr2B 94.815 135 7 0 3450 3584 256961605 256961471 1.010000e-50 211.0
25 TraesCS3B01G474700 chr4B 94.853 136 7 0 2784 2919 518087717 518087582 2.800000e-51 213.0
26 TraesCS3B01G474700 chr4B 94.815 135 6 1 3450 3584 57977636 57977503 3.630000e-50 209.0
27 TraesCS3B01G474700 chr1A 95.522 134 5 1 3451 3584 561386282 561386150 2.800000e-51 213.0
28 TraesCS3B01G474700 chr1A 94.776 134 6 1 2777 2910 530167084 530166952 1.300000e-49 207.0
29 TraesCS3B01G474700 chr1A 92.254 142 9 2 2777 2918 79354981 79355120 2.180000e-47 200.0
30 TraesCS3B01G474700 chr1A 90.805 87 7 1 1861 1946 532673065 532673151 8.130000e-22 115.0
31 TraesCS3B01G474700 chr1A 89.011 91 9 1 1857 1946 532714388 532714478 1.050000e-20 111.0
32 TraesCS3B01G474700 chr6B 94.118 136 7 1 2777 2911 152629958 152630093 4.690000e-49 206.0
33 TraesCS3B01G474700 chr6B 91.216 148 11 2 2776 2921 439380598 439380745 2.180000e-47 200.0
34 TraesCS3B01G474700 chr5B 94.074 135 7 1 3450 3584 87289808 87289675 1.690000e-48 204.0
35 TraesCS3B01G474700 chr1B 90.110 91 8 1 1857 1946 588448625 588448715 2.260000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G474700 chr3B 723498786 723502369 3583 False 6619.00 6619 100.000 1 3584 1 chr3B.!!$F1 3583
1 TraesCS3B01G474700 chr3D 546468122 546471469 3347 False 2647.50 4353 96.323 1 3455 2 chr3D.!!$F2 3454
2 TraesCS3B01G474700 chr3A 683238364 683242279 3915 False 1349.25 3147 96.768 1 3455 4 chr3A.!!$F2 3454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 696 1.656652 ATCGTTCTCTTGGCATTCCG 58.343 50.0 0.00 0.0 34.14 4.30 F
998 1038 1.816074 GGTCGACATTAGCCCAACAA 58.184 50.0 18.91 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1638 0.179163 CAAATTCTTCGAAGGCCGCC 60.179 55.0 24.37 0.0 38.37 6.13 R
2893 3499 0.256752 TGATACTCCCTCCGTCCGAA 59.743 55.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.067413 AGTTGCCAATCATTCTGCATCTTAG 59.933 40.000 0.00 0.00 31.59 2.18
273 287 3.383620 TTGCCATGTAAAAGTGCAAGG 57.616 42.857 0.00 0.00 37.04 3.61
306 320 4.814234 AGTTGAAGTACTCGCAAAATGTGA 59.186 37.500 11.39 0.00 35.36 3.58
322 336 7.221452 GCAAAATGTGAATTACAGATAGCCTTG 59.779 37.037 0.00 0.00 43.80 3.61
323 337 6.382869 AATGTGAATTACAGATAGCCTTGC 57.617 37.500 0.00 0.00 43.80 4.01
324 338 4.842574 TGTGAATTACAGATAGCCTTGCA 58.157 39.130 0.00 0.00 33.42 4.08
325 339 5.439721 TGTGAATTACAGATAGCCTTGCAT 58.560 37.500 0.00 0.00 33.42 3.96
326 340 6.591001 TGTGAATTACAGATAGCCTTGCATA 58.409 36.000 0.00 0.00 33.42 3.14
327 341 7.226441 TGTGAATTACAGATAGCCTTGCATAT 58.774 34.615 0.00 0.00 33.42 1.78
336 363 7.720957 ACAGATAGCCTTGCATATTGATGTAAA 59.279 33.333 0.00 0.00 37.24 2.01
471 511 3.033909 TCCTCCATGACTATGTCCACTG 58.966 50.000 0.00 0.00 32.21 3.66
510 550 2.963101 GGCCACCCCCTAATCATTTAAC 59.037 50.000 0.00 0.00 0.00 2.01
656 696 1.656652 ATCGTTCTCTTGGCATTCCG 58.343 50.000 0.00 0.00 34.14 4.30
943 983 2.260822 ACCACAGTCCTTGCACTAGAT 58.739 47.619 0.00 0.00 0.00 1.98
980 1020 2.403252 ATTGCAGTAGAAGGTTCCGG 57.597 50.000 0.00 0.00 0.00 5.14
998 1038 1.816074 GGTCGACATTAGCCCAACAA 58.184 50.000 18.91 0.00 0.00 2.83
1127 1167 2.551459 CTGTCAACCTTTGCTCTCCAAG 59.449 50.000 0.00 0.00 34.34 3.61
1150 1190 2.101249 ACCAGTGCCAATTCTTGTGTTG 59.899 45.455 0.00 0.00 0.00 3.33
1318 1361 3.131933 TGAGCAGATCAAGAGAACTAGCC 59.868 47.826 0.00 0.00 34.02 3.93
1400 1443 8.134261 GCATCCTCTCTTGAAATAAATCCTTTC 58.866 37.037 0.00 0.00 34.02 2.62
1420 1463 7.604164 TCCTTTCACTGTTCTAACATTCTGATC 59.396 37.037 0.00 0.00 38.41 2.92
1524 1567 2.776670 CTTCGTCCTGCTGCAGCTCA 62.777 60.000 36.61 18.93 42.66 4.26
1535 1578 2.352342 GCTGCAGCTCAGAAGAAGATTC 59.648 50.000 31.33 0.00 45.72 2.52
1541 1584 3.870419 AGCTCAGAAGAAGATTCGATTGC 59.130 43.478 0.00 0.00 0.00 3.56
1595 1638 3.304928 GGTGACAATTCAAGAGGTTGCAG 60.305 47.826 0.00 0.00 31.90 4.41
1625 1668 6.147821 CCTTCGAAGAATTTGCAGTCTCTTTA 59.852 38.462 26.61 0.00 45.90 1.85
1942 1989 6.315393 GCAGCTGCAAATAAAGGTAGTACTTA 59.685 38.462 33.36 0.00 41.59 2.24
1943 1990 7.676572 GCAGCTGCAAATAAAGGTAGTACTTAC 60.677 40.741 33.36 0.00 41.59 2.34
1944 1991 7.549488 CAGCTGCAAATAAAGGTAGTACTTACT 59.451 37.037 0.00 0.00 40.24 2.24
1945 1992 8.101419 AGCTGCAAATAAAGGTAGTACTTACTT 58.899 33.333 0.00 3.17 37.73 2.24
1969 2016 7.296628 TGTTTATGTTCCAGTTAAGCCATTT 57.703 32.000 0.00 0.00 0.00 2.32
1971 2018 6.909550 TTATGTTCCAGTTAAGCCATTTGT 57.090 33.333 0.00 0.00 0.00 2.83
1976 2023 5.389859 TCCAGTTAAGCCATTTGTCATTG 57.610 39.130 0.00 0.00 0.00 2.82
2010 2161 3.313012 ACACTGAATTCATCGAACCGA 57.687 42.857 8.96 0.00 41.13 4.69
2069 2220 2.833227 GGTGCCACACTACCACCA 59.167 61.111 0.00 0.00 46.38 4.17
2119 2270 9.043079 CCTCCGTTCCTAAATATAAGTCTTTTC 57.957 37.037 0.00 0.00 0.00 2.29
2258 2417 8.716674 TTAGAAACGGAGGGAGTATATAACAT 57.283 34.615 0.00 0.00 0.00 2.71
2328 2487 7.323656 CAGATTTGAACAGAATACCAAAACGAC 59.676 37.037 0.00 0.00 33.05 4.34
2379 2985 4.157656 GGATTTAAATTTGGCAAAAGGGGC 59.842 41.667 17.70 3.74 0.00 5.80
2782 3388 5.163530 TGCCATATGTAGCAAGGAAACAATG 60.164 40.000 4.39 0.00 35.69 2.82
2783 3389 5.163519 GCCATATGTAGCAAGGAAACAATGT 60.164 40.000 1.24 0.00 0.00 2.71
2784 3390 6.039270 GCCATATGTAGCAAGGAAACAATGTA 59.961 38.462 1.24 0.00 0.00 2.29
2785 3391 7.417612 CCATATGTAGCAAGGAAACAATGTAC 58.582 38.462 1.24 0.00 0.00 2.90
2786 3392 7.283127 CCATATGTAGCAAGGAAACAATGTACT 59.717 37.037 1.24 0.00 0.00 2.73
2787 3393 6.743575 ATGTAGCAAGGAAACAATGTACTC 57.256 37.500 0.00 0.00 0.00 2.59
2788 3394 5.001232 TGTAGCAAGGAAACAATGTACTCC 58.999 41.667 6.37 6.37 0.00 3.85
2789 3395 3.421844 AGCAAGGAAACAATGTACTCCC 58.578 45.455 9.94 0.00 0.00 4.30
2790 3396 3.074538 AGCAAGGAAACAATGTACTCCCT 59.925 43.478 9.94 1.50 0.00 4.20
2791 3397 3.440522 GCAAGGAAACAATGTACTCCCTC 59.559 47.826 9.94 0.00 0.00 4.30
2792 3398 4.010349 CAAGGAAACAATGTACTCCCTCC 58.990 47.826 9.94 0.31 0.00 4.30
2793 3399 2.236395 AGGAAACAATGTACTCCCTCCG 59.764 50.000 9.94 0.00 0.00 4.63
2794 3400 2.027469 GGAAACAATGTACTCCCTCCGT 60.027 50.000 3.69 0.00 0.00 4.69
2795 3401 3.259902 GAAACAATGTACTCCCTCCGTC 58.740 50.000 0.00 0.00 0.00 4.79
2796 3402 1.192428 ACAATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
2797 3403 0.102481 CAATGTACTCCCTCCGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
2798 3404 0.033796 AATGTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
2799 3405 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
2800 3406 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
2801 3407 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2802 3408 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2803 3409 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2804 3410 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2805 3411 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2806 3412 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2807 3413 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2808 3414 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2809 3415 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2810 3416 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2811 3417 3.991773 CTCCGTCCGAAAATACTTGTCAA 59.008 43.478 0.00 0.00 0.00 3.18
2812 3418 3.742369 TCCGTCCGAAAATACTTGTCAAC 59.258 43.478 0.00 0.00 0.00 3.18
2813 3419 3.495377 CCGTCCGAAAATACTTGTCAACA 59.505 43.478 0.00 0.00 0.00 3.33
2814 3420 4.024725 CCGTCCGAAAATACTTGTCAACAA 60.025 41.667 0.00 0.00 0.00 2.83
2815 3421 5.503498 CGTCCGAAAATACTTGTCAACAAA 58.497 37.500 0.00 0.00 35.15 2.83
2816 3422 5.966503 CGTCCGAAAATACTTGTCAACAAAA 59.033 36.000 0.00 0.00 35.15 2.44
2817 3423 6.635239 CGTCCGAAAATACTTGTCAACAAAAT 59.365 34.615 0.00 0.00 35.15 1.82
2818 3424 7.357206 CGTCCGAAAATACTTGTCAACAAAATG 60.357 37.037 0.00 0.00 35.15 2.32
2819 3425 6.920758 TCCGAAAATACTTGTCAACAAAATGG 59.079 34.615 0.00 0.00 35.15 3.16
2820 3426 6.920758 CCGAAAATACTTGTCAACAAAATGGA 59.079 34.615 0.00 0.00 35.15 3.41
2821 3427 7.096230 CCGAAAATACTTGTCAACAAAATGGAC 60.096 37.037 0.00 0.00 35.15 4.02
2822 3428 7.433719 CGAAAATACTTGTCAACAAAATGGACA 59.566 33.333 0.00 0.00 39.60 4.02
2823 3429 9.092876 GAAAATACTTGTCAACAAAATGGACAA 57.907 29.630 0.00 0.00 46.09 3.18
2828 3434 6.734104 TTGTCAACAAAATGGACAAAAAGG 57.266 33.333 4.15 0.00 45.51 3.11
2829 3435 5.181748 TGTCAACAAAATGGACAAAAAGGG 58.818 37.500 0.00 0.00 38.50 3.95
2830 3436 5.046304 TGTCAACAAAATGGACAAAAAGGGA 60.046 36.000 0.00 0.00 38.50 4.20
2831 3437 6.054941 GTCAACAAAATGGACAAAAAGGGAT 58.945 36.000 0.00 0.00 0.00 3.85
2832 3438 6.018016 GTCAACAAAATGGACAAAAAGGGATG 60.018 38.462 0.00 0.00 0.00 3.51
2833 3439 5.628797 ACAAAATGGACAAAAAGGGATGT 57.371 34.783 0.00 0.00 0.00 3.06
2834 3440 6.739331 ACAAAATGGACAAAAAGGGATGTA 57.261 33.333 0.00 0.00 0.00 2.29
2835 3441 7.315066 ACAAAATGGACAAAAAGGGATGTAT 57.685 32.000 0.00 0.00 0.00 2.29
2836 3442 7.386059 ACAAAATGGACAAAAAGGGATGTATC 58.614 34.615 0.00 0.00 0.00 2.24
2837 3443 7.235399 ACAAAATGGACAAAAAGGGATGTATCT 59.765 33.333 0.00 0.00 0.00 1.98
2838 3444 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
2839 3445 8.893563 AAATGGACAAAAAGGGATGTATCTAA 57.106 30.769 0.00 0.00 0.00 2.10
2840 3446 8.893563 AATGGACAAAAAGGGATGTATCTAAA 57.106 30.769 0.00 0.00 0.00 1.85
2841 3447 8.893563 ATGGACAAAAAGGGATGTATCTAAAA 57.106 30.769 0.00 0.00 0.00 1.52
2842 3448 8.117813 TGGACAAAAAGGGATGTATCTAAAAC 57.882 34.615 0.00 0.00 0.00 2.43
2843 3449 7.947890 TGGACAAAAAGGGATGTATCTAAAACT 59.052 33.333 0.00 0.00 0.00 2.66
2844 3450 9.457436 GGACAAAAAGGGATGTATCTAAAACTA 57.543 33.333 0.00 0.00 0.00 2.24
2875 3481 9.842775 ACATCTAGATGCATCTTCTTTTATTCA 57.157 29.630 32.94 11.07 42.39 2.57
2897 3503 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
2898 3504 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
2899 3505 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
2900 3506 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2901 3507 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2902 3508 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2903 3509 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2904 3510 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2905 3511 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2906 3512 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3034 3640 3.324556 AGGTATGCATTGCCAGTTTTTGT 59.675 39.130 18.38 0.00 0.00 2.83
3125 3731 1.310933 GCACCTTGTGGCTCTCATGG 61.311 60.000 0.00 7.28 36.63 3.66
3144 3750 1.070914 GGTCCATTAGGTAGCTCTGGC 59.929 57.143 15.36 11.45 35.89 4.85
3285 3891 6.165577 GCATCTGATGGTAATTTGGTTTGTT 58.834 36.000 18.60 0.00 0.00 2.83
3435 4041 3.140623 GGTTGCCAAAGTTGCATCAATT 58.859 40.909 0.00 0.00 38.76 2.32
3455 4061 9.935241 ATCAATTATAGATTGATGAGCTACGTT 57.065 29.630 12.10 0.00 44.39 3.99
3456 4062 9.196552 TCAATTATAGATTGATGAGCTACGTTG 57.803 33.333 0.00 0.00 33.55 4.10
3457 4063 7.588143 ATTATAGATTGATGAGCTACGTTGC 57.412 36.000 14.34 14.34 0.00 4.17
3458 4064 2.196749 AGATTGATGAGCTACGTTGCG 58.803 47.619 16.07 0.00 38.13 4.85
3459 4065 0.652592 ATTGATGAGCTACGTTGCGC 59.347 50.000 17.69 17.69 38.13 6.09
3461 4067 2.860628 GATGAGCTACGTTGCGCGG 61.861 63.158 18.94 0.00 46.52 6.46
3462 4068 3.350909 ATGAGCTACGTTGCGCGGA 62.351 57.895 18.94 0.00 46.52 5.54
3463 4069 2.582498 GAGCTACGTTGCGCGGAT 60.582 61.111 16.07 0.00 46.52 4.18
3464 4070 1.298863 GAGCTACGTTGCGCGGATA 60.299 57.895 16.07 0.00 46.52 2.59
3465 4071 1.538117 GAGCTACGTTGCGCGGATAC 61.538 60.000 16.07 5.53 46.52 2.24
3466 4072 1.588139 GCTACGTTGCGCGGATACT 60.588 57.895 8.83 0.00 46.52 2.12
3467 4073 1.143969 GCTACGTTGCGCGGATACTT 61.144 55.000 8.83 2.76 46.52 2.24
3468 4074 0.844503 CTACGTTGCGCGGATACTTC 59.155 55.000 8.83 0.00 46.52 3.01
3469 4075 0.170784 TACGTTGCGCGGATACTTCA 59.829 50.000 8.83 0.00 46.52 3.02
3470 4076 0.668096 ACGTTGCGCGGATACTTCAA 60.668 50.000 8.83 0.00 46.52 2.69
3471 4077 0.440758 CGTTGCGCGGATACTTCAAA 59.559 50.000 8.83 0.00 36.85 2.69
3472 4078 1.136197 CGTTGCGCGGATACTTCAAAA 60.136 47.619 8.83 0.00 36.85 2.44
3473 4079 2.663334 CGTTGCGCGGATACTTCAAAAA 60.663 45.455 8.83 0.00 36.85 1.94
3474 4080 2.892373 TGCGCGGATACTTCAAAAAG 57.108 45.000 8.83 0.00 38.54 2.27
3475 4081 6.871133 CGTTGCGCGGATACTTCAAAAAGT 62.871 45.833 8.83 0.00 41.81 2.66
3476 4082 2.095969 TGCGCGGATACTTCAAAAAGTG 60.096 45.455 8.83 0.00 45.37 3.16
3477 4083 2.505866 CGCGGATACTTCAAAAAGTGC 58.494 47.619 0.00 0.00 45.37 4.40
3478 4084 2.505866 GCGGATACTTCAAAAAGTGCG 58.494 47.619 1.17 0.00 45.37 5.34
3479 4085 2.505866 CGGATACTTCAAAAAGTGCGC 58.494 47.619 0.00 0.00 45.37 6.09
3480 4086 2.505866 GGATACTTCAAAAAGTGCGCG 58.494 47.619 0.00 0.00 45.37 6.86
3481 4087 2.095919 GGATACTTCAAAAAGTGCGCGT 60.096 45.455 8.43 0.00 45.37 6.01
3482 4088 3.123959 GGATACTTCAAAAAGTGCGCGTA 59.876 43.478 8.43 0.00 45.37 4.42
3483 4089 4.201783 GGATACTTCAAAAAGTGCGCGTAT 60.202 41.667 8.43 0.00 45.37 3.06
3484 4090 3.183237 ACTTCAAAAAGTGCGCGTATC 57.817 42.857 8.43 0.00 44.13 2.24
3485 4091 2.095919 ACTTCAAAAAGTGCGCGTATCC 60.096 45.455 8.43 0.00 44.13 2.59
3486 4092 1.514003 TCAAAAAGTGCGCGTATCCA 58.486 45.000 8.43 0.00 0.00 3.41
3487 4093 1.463056 TCAAAAAGTGCGCGTATCCAG 59.537 47.619 8.43 0.00 0.00 3.86
3488 4094 0.168128 AAAAAGTGCGCGTATCCAGC 59.832 50.000 8.43 0.00 0.00 4.85
3489 4095 1.644786 AAAAGTGCGCGTATCCAGCC 61.645 55.000 8.43 0.00 0.00 4.85
3490 4096 4.873129 AGTGCGCGTATCCAGCCG 62.873 66.667 8.43 0.00 0.00 5.52
3509 4115 0.526662 GGATACTGCCCCGATACTCG 59.473 60.000 0.00 0.00 40.07 4.18
3520 4126 0.526662 CGATACTCGGATACTGCCCC 59.473 60.000 0.00 0.00 36.00 5.80
3521 4127 0.526662 GATACTCGGATACTGCCCCG 59.473 60.000 0.00 0.00 46.57 5.73
3529 4135 3.487120 GGATACTGCCCCGATACTTTT 57.513 47.619 0.00 0.00 0.00 2.27
3530 4136 3.400255 GGATACTGCCCCGATACTTTTC 58.600 50.000 0.00 0.00 0.00 2.29
3531 4137 2.589798 TACTGCCCCGATACTTTTCG 57.410 50.000 0.00 0.00 38.83 3.46
3532 4138 0.899720 ACTGCCCCGATACTTTTCGA 59.100 50.000 0.00 0.00 41.62 3.71
3533 4139 1.485066 ACTGCCCCGATACTTTTCGAT 59.515 47.619 0.00 0.00 41.62 3.59
3534 4140 2.696707 ACTGCCCCGATACTTTTCGATA 59.303 45.455 0.00 0.00 41.62 2.92
3535 4141 3.057734 CTGCCCCGATACTTTTCGATAC 58.942 50.000 0.00 0.00 41.62 2.24
3536 4142 2.056577 GCCCCGATACTTTTCGATACG 58.943 52.381 0.00 0.00 41.62 3.06
3537 4143 2.544486 GCCCCGATACTTTTCGATACGT 60.544 50.000 0.00 0.00 41.62 3.57
3538 4144 3.304659 GCCCCGATACTTTTCGATACGTA 60.305 47.826 0.00 0.00 41.62 3.57
3539 4145 4.616835 GCCCCGATACTTTTCGATACGTAT 60.617 45.833 8.05 8.05 41.62 3.06
3540 4146 5.091431 CCCCGATACTTTTCGATACGTATC 58.909 45.833 23.03 23.03 41.62 2.24
3541 4147 5.091431 CCCGATACTTTTCGATACGTATCC 58.909 45.833 25.89 11.35 41.62 2.59
3542 4148 5.091431 CCGATACTTTTCGATACGTATCCC 58.909 45.833 25.89 7.05 41.62 3.85
3543 4149 4.785055 CGATACTTTTCGATACGTATCCCG 59.215 45.833 25.89 17.79 41.62 5.14
3544 4150 5.615544 CGATACTTTTCGATACGTATCCCGT 60.616 44.000 25.89 17.76 46.35 5.28
3545 4151 9.202287 CCGATACTTTTCGATACGTATCCCGTA 62.202 44.444 25.89 18.96 44.34 4.02
3556 4162 2.417933 CGTATCCCGTAAGTATCCCTCG 59.582 54.545 0.00 0.00 0.00 4.63
3557 4163 2.965671 ATCCCGTAAGTATCCCTCGA 57.034 50.000 0.00 0.00 0.00 4.04
3558 4164 2.965671 TCCCGTAAGTATCCCTCGAT 57.034 50.000 0.00 0.00 0.00 3.59
3559 4165 4.581309 ATCCCGTAAGTATCCCTCGATA 57.419 45.455 0.00 0.00 0.00 2.92
3560 4166 4.581309 TCCCGTAAGTATCCCTCGATAT 57.419 45.455 0.00 0.00 33.54 1.63
3561 4167 4.927049 TCCCGTAAGTATCCCTCGATATT 58.073 43.478 0.00 0.00 33.54 1.28
3562 4168 5.327732 TCCCGTAAGTATCCCTCGATATTT 58.672 41.667 0.00 0.00 35.66 1.40
3563 4169 5.776716 TCCCGTAAGTATCCCTCGATATTTT 59.223 40.000 0.00 0.00 34.03 1.82
3564 4170 5.867716 CCCGTAAGTATCCCTCGATATTTTG 59.132 44.000 0.00 0.00 34.03 2.44
3565 4171 6.294899 CCCGTAAGTATCCCTCGATATTTTGA 60.295 42.308 0.00 0.00 34.03 2.69
3566 4172 7.321153 CCGTAAGTATCCCTCGATATTTTGAT 58.679 38.462 0.00 0.00 34.03 2.57
3567 4173 8.464404 CCGTAAGTATCCCTCGATATTTTGATA 58.536 37.037 0.00 0.00 34.03 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 238 4.617520 TGCCGCTGCTGAAACCGA 62.618 61.111 0.70 0.00 38.71 4.69
226 239 3.659092 TTGCCGCTGCTGAAACCG 61.659 61.111 0.70 0.00 38.71 4.44
252 266 3.577848 TCCTTGCACTTTTACATGGCAAT 59.422 39.130 0.00 0.00 42.79 3.56
273 287 4.614078 CGAGTACTTCAACTCTCACCTGTC 60.614 50.000 0.00 0.00 43.11 3.51
306 320 8.737175 CATCAATATGCAAGGCTATCTGTAATT 58.263 33.333 0.00 0.00 0.00 1.40
336 363 7.109501 ACTTTGCAACAGTTAAGGGAAATTTT 58.890 30.769 0.00 0.00 0.00 1.82
416 456 5.560724 CAGATCATAAACGGAATGGGGTAT 58.439 41.667 0.00 0.00 0.00 2.73
420 460 2.224079 CGCAGATCATAAACGGAATGGG 59.776 50.000 0.00 0.00 0.00 4.00
422 462 3.363378 GCTCGCAGATCATAAACGGAATG 60.363 47.826 0.00 0.00 33.89 2.67
428 468 3.868077 AGAAGTGCTCGCAGATCATAAAC 59.132 43.478 0.00 0.00 34.28 2.01
471 511 3.258123 TGGCCAGGACTAAGAAAATTTGC 59.742 43.478 0.00 0.00 0.00 3.68
538 578 7.713764 ATAAAGTTGCAAAATTCCACAAGAC 57.286 32.000 0.00 0.00 30.03 3.01
575 615 5.481105 ACAATAATTGCCACCAAGTGATTG 58.519 37.500 0.00 0.48 35.23 2.67
639 679 0.443869 CACGGAATGCCAAGAGAACG 59.556 55.000 0.00 0.00 0.00 3.95
656 696 2.988010 TGTCATACTGATGCCTCCAC 57.012 50.000 0.00 0.00 32.62 4.02
980 1020 3.907894 TTTTGTTGGGCTAATGTCGAC 57.092 42.857 9.11 9.11 0.00 4.20
998 1038 3.578456 CGCACTTCGCCTCCATTT 58.422 55.556 0.00 0.00 37.30 2.32
1150 1190 0.935898 CTATGCACTGTGCTAGCTGC 59.064 55.000 30.43 17.27 45.31 5.25
1318 1361 1.679032 GGGAACAGTCCGGGATTTCTG 60.679 57.143 0.00 10.64 46.04 3.02
1400 1443 6.509199 GCATCGATCAGAATGTTAGAACAGTG 60.509 42.308 0.00 0.00 43.04 3.66
1524 1567 1.936547 GCGGCAATCGAATCTTCTTCT 59.063 47.619 0.00 0.00 42.43 2.85
1535 1578 0.811219 TTCCTCAGATGCGGCAATCG 60.811 55.000 6.82 0.00 42.76 3.34
1541 1584 1.945394 CAAAGGATTCCTCAGATGCGG 59.055 52.381 5.48 0.00 30.89 5.69
1595 1638 0.179163 CAAATTCTTCGAAGGCCGCC 60.179 55.000 24.37 0.00 38.37 6.13
1625 1668 1.073284 ACCGTGTCCTAACCTTTGCAT 59.927 47.619 0.00 0.00 0.00 3.96
1942 1989 5.830991 TGGCTTAACTGGAACATAAACAAGT 59.169 36.000 0.00 0.00 38.20 3.16
1943 1990 6.325919 TGGCTTAACTGGAACATAAACAAG 57.674 37.500 0.00 0.00 38.20 3.16
1944 1991 6.909550 ATGGCTTAACTGGAACATAAACAA 57.090 33.333 0.00 0.00 38.20 2.83
1945 1992 6.909550 AATGGCTTAACTGGAACATAAACA 57.090 33.333 0.00 0.00 38.20 2.83
1994 2145 5.172205 TGTTGTATCGGTTCGATGAATTCA 58.828 37.500 11.26 11.26 46.43 2.57
2010 2161 5.911752 TGTCCATGCAAACTTTTGTTGTAT 58.088 33.333 0.00 0.00 42.67 2.29
2069 2220 8.116026 AGGGAGTATGTTGAATTTTGGAAGTAT 58.884 33.333 0.00 0.00 0.00 2.12
2143 2294 4.685169 TGATTCACTCATTTTTCTCCGC 57.315 40.909 0.00 0.00 0.00 5.54
2258 2417 2.315176 CATCCAAACAACCTCCCAACA 58.685 47.619 0.00 0.00 0.00 3.33
2379 2985 4.095483 AGCACAGAGGATTAAGCAATTTCG 59.905 41.667 0.00 0.00 0.00 3.46
2782 3388 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2783 3389 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2784 3390 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2785 3391 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2786 3392 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2787 3393 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2788 3394 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2789 3395 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2790 3396 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2791 3397 3.495377 TGTTGACAAGTATTTTCGGACGG 59.505 43.478 0.00 0.00 0.00 4.79
2792 3398 4.718858 TGTTGACAAGTATTTTCGGACG 57.281 40.909 0.00 0.00 0.00 4.79
2793 3399 7.096230 CCATTTTGTTGACAAGTATTTTCGGAC 60.096 37.037 0.00 0.00 37.15 4.79
2794 3400 6.920758 CCATTTTGTTGACAAGTATTTTCGGA 59.079 34.615 0.00 0.00 37.15 4.55
2795 3401 6.920758 TCCATTTTGTTGACAAGTATTTTCGG 59.079 34.615 0.00 0.00 37.15 4.30
2796 3402 7.433719 TGTCCATTTTGTTGACAAGTATTTTCG 59.566 33.333 0.00 0.00 36.16 3.46
2797 3403 8.641499 TGTCCATTTTGTTGACAAGTATTTTC 57.359 30.769 0.00 0.00 36.16 2.29
2798 3404 9.442047 TTTGTCCATTTTGTTGACAAGTATTTT 57.558 25.926 0.00 0.00 46.27 1.82
2799 3405 9.442047 TTTTGTCCATTTTGTTGACAAGTATTT 57.558 25.926 0.00 0.00 46.27 1.40
2800 3406 9.442047 TTTTTGTCCATTTTGTTGACAAGTATT 57.558 25.926 0.00 0.00 46.27 1.89
2801 3407 9.097257 CTTTTTGTCCATTTTGTTGACAAGTAT 57.903 29.630 0.00 0.00 46.27 2.12
2802 3408 7.547370 CCTTTTTGTCCATTTTGTTGACAAGTA 59.453 33.333 0.00 0.00 46.27 2.24
2803 3409 6.371271 CCTTTTTGTCCATTTTGTTGACAAGT 59.629 34.615 0.00 0.00 46.27 3.16
2804 3410 6.183360 CCCTTTTTGTCCATTTTGTTGACAAG 60.183 38.462 0.00 0.00 46.27 3.16
2805 3411 5.645497 CCCTTTTTGTCCATTTTGTTGACAA 59.355 36.000 0.00 0.00 44.70 3.18
2806 3412 5.046304 TCCCTTTTTGTCCATTTTGTTGACA 60.046 36.000 0.00 0.00 37.24 3.58
2807 3413 5.423886 TCCCTTTTTGTCCATTTTGTTGAC 58.576 37.500 0.00 0.00 0.00 3.18
2808 3414 5.683876 TCCCTTTTTGTCCATTTTGTTGA 57.316 34.783 0.00 0.00 0.00 3.18
2809 3415 5.821995 ACATCCCTTTTTGTCCATTTTGTTG 59.178 36.000 0.00 0.00 0.00 3.33
2810 3416 6.000246 ACATCCCTTTTTGTCCATTTTGTT 58.000 33.333 0.00 0.00 0.00 2.83
2811 3417 5.628797 ACATCCCTTTTTGTCCATTTTGT 57.371 34.783 0.00 0.00 0.00 2.83
2812 3418 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
2813 3419 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
2814 3420 8.893563 TTAGATACATCCCTTTTTGTCCATTT 57.106 30.769 0.00 0.00 0.00 2.32
2815 3421 8.893563 TTTAGATACATCCCTTTTTGTCCATT 57.106 30.769 0.00 0.00 0.00 3.16
2816 3422 8.749354 GTTTTAGATACATCCCTTTTTGTCCAT 58.251 33.333 0.00 0.00 0.00 3.41
2817 3423 7.947890 AGTTTTAGATACATCCCTTTTTGTCCA 59.052 33.333 0.00 0.00 0.00 4.02
2818 3424 8.349568 AGTTTTAGATACATCCCTTTTTGTCC 57.650 34.615 0.00 0.00 0.00 4.02
2849 3455 9.842775 TGAATAAAAGAAGATGCATCTAGATGT 57.157 29.630 28.92 13.58 40.80 3.06
2871 3477 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
2872 3478 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
2873 3479 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
2874 3480 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2875 3481 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2876 3482 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2877 3483 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2878 3484 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2879 3485 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2880 3486 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2881 3487 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2882 3488 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2883 3489 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2884 3490 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2885 3491 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2886 3492 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2887 3493 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2888 3494 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2889 3495 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2890 3496 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2891 3497 1.753073 GATACTCCCTCCGTCCGAAAA 59.247 52.381 0.00 0.00 0.00 2.29
2892 3498 1.341285 TGATACTCCCTCCGTCCGAAA 60.341 52.381 0.00 0.00 0.00 3.46
2893 3499 0.256752 TGATACTCCCTCCGTCCGAA 59.743 55.000 0.00 0.00 0.00 4.30
2894 3500 0.256752 TTGATACTCCCTCCGTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
2895 3501 1.108776 TTTGATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
2896 3502 4.344390 ACTTATTTGATACTCCCTCCGTCC 59.656 45.833 0.00 0.00 0.00 4.79
2897 3503 5.302313 AGACTTATTTGATACTCCCTCCGTC 59.698 44.000 0.00 0.00 0.00 4.79
2898 3504 5.069251 CAGACTTATTTGATACTCCCTCCGT 59.931 44.000 0.00 0.00 0.00 4.69
2899 3505 5.302059 TCAGACTTATTTGATACTCCCTCCG 59.698 44.000 0.00 0.00 0.00 4.63
2900 3506 6.732896 TCAGACTTATTTGATACTCCCTCC 57.267 41.667 0.00 0.00 0.00 4.30
2941 3547 6.240894 TGATAAGAAAATCACTGAGCCAAGT 58.759 36.000 0.00 0.00 30.92 3.16
3125 3731 1.762957 TGCCAGAGCTACCTAATGGAC 59.237 52.381 0.00 0.00 40.80 4.02
3144 3750 1.831736 AGGACTCGGTTTACATCCCTG 59.168 52.381 0.00 0.00 0.00 4.45
3198 3804 4.924625 TGATAGTTCATTTTCCCCGGAAA 58.075 39.130 0.73 4.76 41.69 3.13
3206 3812 6.500684 TGGTGAGCTTGATAGTTCATTTTC 57.499 37.500 0.00 0.00 42.51 2.29
3285 3891 5.316167 TCCAAGATAAAGCTTTTGAGCAGA 58.684 37.500 18.47 5.82 37.25 4.26
3435 4041 5.154222 CGCAACGTAGCTCATCAATCTATA 58.846 41.667 0.00 0.00 0.00 1.31
3449 4055 0.844503 GAAGTATCCGCGCAACGTAG 59.155 55.000 8.75 0.00 41.42 3.51
3450 4056 0.170784 TGAAGTATCCGCGCAACGTA 59.829 50.000 8.75 0.00 41.42 3.57
3451 4057 0.668096 TTGAAGTATCCGCGCAACGT 60.668 50.000 8.75 0.00 41.42 3.99
3452 4058 0.440758 TTTGAAGTATCCGCGCAACG 59.559 50.000 8.75 0.00 43.15 4.10
3453 4059 2.604969 TTTTGAAGTATCCGCGCAAC 57.395 45.000 8.75 0.00 0.00 4.17
3454 4060 2.550606 ACTTTTTGAAGTATCCGCGCAA 59.449 40.909 8.75 0.00 0.00 4.85
3455 4061 2.095969 CACTTTTTGAAGTATCCGCGCA 60.096 45.455 8.75 0.00 0.00 6.09
3456 4062 2.505866 CACTTTTTGAAGTATCCGCGC 58.494 47.619 0.00 0.00 0.00 6.86
3457 4063 2.505866 GCACTTTTTGAAGTATCCGCG 58.494 47.619 0.00 0.00 0.00 6.46
3458 4064 2.505866 CGCACTTTTTGAAGTATCCGC 58.494 47.619 0.00 0.00 0.00 5.54
3459 4065 2.505866 GCGCACTTTTTGAAGTATCCG 58.494 47.619 0.30 0.00 0.00 4.18
3460 4066 2.095919 ACGCGCACTTTTTGAAGTATCC 60.096 45.455 5.73 0.00 0.00 2.59
3461 4067 3.183237 ACGCGCACTTTTTGAAGTATC 57.817 42.857 5.73 0.00 0.00 2.24
3462 4068 4.201783 GGATACGCGCACTTTTTGAAGTAT 60.202 41.667 5.73 2.36 0.00 2.12
3463 4069 3.123959 GGATACGCGCACTTTTTGAAGTA 59.876 43.478 5.73 0.00 0.00 2.24
3464 4070 2.095919 GGATACGCGCACTTTTTGAAGT 60.096 45.455 5.73 0.00 0.00 3.01
3465 4071 2.095969 TGGATACGCGCACTTTTTGAAG 60.096 45.455 5.73 0.00 42.51 3.02
3466 4072 1.874231 TGGATACGCGCACTTTTTGAA 59.126 42.857 5.73 0.00 42.51 2.69
3467 4073 1.463056 CTGGATACGCGCACTTTTTGA 59.537 47.619 5.73 0.00 42.51 2.69
3468 4074 1.882198 CTGGATACGCGCACTTTTTG 58.118 50.000 5.73 0.00 42.51 2.44
3469 4075 0.168128 GCTGGATACGCGCACTTTTT 59.832 50.000 5.73 0.00 42.51 1.94
3470 4076 1.644786 GGCTGGATACGCGCACTTTT 61.645 55.000 5.73 0.00 42.51 2.27
3471 4077 2.106683 GGCTGGATACGCGCACTTT 61.107 57.895 5.73 0.00 42.51 2.66
3472 4078 2.511600 GGCTGGATACGCGCACTT 60.512 61.111 5.73 0.00 42.51 3.16
3473 4079 4.873129 CGGCTGGATACGCGCACT 62.873 66.667 5.73 0.00 42.51 4.40
3484 4090 4.256180 GGGGCAGTATCCGGCTGG 62.256 72.222 4.71 4.71 34.73 4.85
3485 4091 4.609018 CGGGGCAGTATCCGGCTG 62.609 72.222 0.00 0.00 42.32 4.85
3486 4092 2.725127 TATCGGGGCAGTATCCGGCT 62.725 60.000 0.00 0.00 45.69 5.52
3487 4093 2.280552 TATCGGGGCAGTATCCGGC 61.281 63.158 0.00 0.00 45.69 6.13
3488 4094 0.898789 AGTATCGGGGCAGTATCCGG 60.899 60.000 0.00 0.00 45.69 5.14
3489 4095 0.526662 GAGTATCGGGGCAGTATCCG 59.473 60.000 0.00 0.00 46.89 4.18
3508 4114 0.966920 AAGTATCGGGGCAGTATCCG 59.033 55.000 0.00 0.00 46.89 4.18
3509 4115 3.400255 GAAAAGTATCGGGGCAGTATCC 58.600 50.000 0.00 0.00 0.00 2.59
3510 4116 3.057734 CGAAAAGTATCGGGGCAGTATC 58.942 50.000 0.00 0.00 39.12 2.24
3511 4117 2.696707 TCGAAAAGTATCGGGGCAGTAT 59.303 45.455 0.00 0.00 42.92 2.12
3512 4118 2.101783 TCGAAAAGTATCGGGGCAGTA 58.898 47.619 0.00 0.00 42.92 2.74
3513 4119 0.899720 TCGAAAAGTATCGGGGCAGT 59.100 50.000 0.00 0.00 42.92 4.40
3514 4120 2.240493 ATCGAAAAGTATCGGGGCAG 57.760 50.000 0.00 0.00 42.92 4.85
3515 4121 2.544277 CGTATCGAAAAGTATCGGGGCA 60.544 50.000 0.00 0.00 42.92 5.36
3516 4122 2.056577 CGTATCGAAAAGTATCGGGGC 58.943 52.381 0.00 0.00 42.92 5.80
3517 4123 3.360249 ACGTATCGAAAAGTATCGGGG 57.640 47.619 0.00 0.00 42.92 5.73
3518 4124 5.091431 GGATACGTATCGAAAAGTATCGGG 58.909 45.833 25.21 0.00 43.64 5.14
3519 4125 5.091431 GGGATACGTATCGAAAAGTATCGG 58.909 45.833 25.21 0.00 43.64 4.18
3520 4126 4.785055 CGGGATACGTATCGAAAAGTATCG 59.215 45.833 25.21 14.37 43.64 2.92
3533 4139 8.985417 TATCGAGGGATACTTACGGGATACGTA 61.985 44.444 0.00 0.00 43.33 3.57
3534 4140 8.256887 TATCGAGGGATACTTACGGGATACGT 62.257 46.154 0.00 0.00 45.37 3.57
3535 4141 5.912467 TATCGAGGGATACTTACGGGATACG 60.912 48.000 0.00 0.00 40.35 3.06
3536 4142 3.679389 TCGAGGGATACTTACGGGATAC 58.321 50.000 0.00 0.00 0.00 2.24
3537 4143 4.581309 ATCGAGGGATACTTACGGGATA 57.419 45.455 0.00 0.00 0.00 2.59
3538 4144 2.965671 TCGAGGGATACTTACGGGAT 57.034 50.000 0.00 0.00 0.00 3.85
3539 4145 2.965671 ATCGAGGGATACTTACGGGA 57.034 50.000 0.00 0.00 0.00 5.14
3540 4146 5.656213 AAATATCGAGGGATACTTACGGG 57.344 43.478 0.00 0.00 37.94 5.28
3541 4147 6.684686 TCAAAATATCGAGGGATACTTACGG 58.315 40.000 0.00 0.00 37.94 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.