Multiple sequence alignment - TraesCS3B01G474600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G474600 | chr3B | 100.000 | 2902 | 0 | 0 | 1 | 2902 | 723470983 | 723468082 | 0.000000e+00 | 5360.0 |
1 | TraesCS3B01G474600 | chr3B | 92.537 | 67 | 5 | 0 | 2626 | 2692 | 229295932 | 229295998 | 2.380000e-16 | 97.1 |
2 | TraesCS3B01G474600 | chr3B | 98.000 | 50 | 1 | 0 | 263 | 312 | 723470673 | 723470624 | 1.430000e-13 | 87.9 |
3 | TraesCS3B01G474600 | chr3B | 98.000 | 50 | 1 | 0 | 311 | 360 | 723470721 | 723470672 | 1.430000e-13 | 87.9 |
4 | TraesCS3B01G474600 | chr3D | 91.795 | 1560 | 64 | 13 | 995 | 2528 | 546391861 | 546390340 | 0.000000e+00 | 2113.0 |
5 | TraesCS3B01G474600 | chr3D | 86.876 | 701 | 52 | 13 | 311 | 996 | 546392567 | 546391892 | 0.000000e+00 | 749.0 |
6 | TraesCS3B01G474600 | chr3D | 89.103 | 312 | 31 | 3 | 1 | 311 | 546392829 | 546392520 | 4.540000e-103 | 385.0 |
7 | TraesCS3B01G474600 | chr3D | 92.417 | 211 | 12 | 3 | 2693 | 2902 | 546390043 | 546389836 | 6.080000e-77 | 298.0 |
8 | TraesCS3B01G474600 | chr3D | 100.000 | 66 | 0 | 0 | 2574 | 2639 | 546390093 | 546390028 | 3.930000e-24 | 122.0 |
9 | TraesCS3B01G474600 | chr3A | 84.800 | 125 | 14 | 5 | 61 | 181 | 50742524 | 50742647 | 1.410000e-23 | 121.0 |
10 | TraesCS3B01G474600 | chr2B | 79.365 | 189 | 26 | 7 | 478 | 661 | 768559878 | 768559698 | 1.410000e-23 | 121.0 |
11 | TraesCS3B01G474600 | chr6B | 100.000 | 56 | 0 | 0 | 2637 | 2692 | 314575905 | 314575960 | 1.420000e-18 | 104.0 |
12 | TraesCS3B01G474600 | chr4A | 96.825 | 63 | 1 | 1 | 2633 | 2695 | 479322994 | 479322933 | 1.420000e-18 | 104.0 |
13 | TraesCS3B01G474600 | chr4A | 96.667 | 60 | 2 | 0 | 2633 | 2692 | 111286913 | 111286972 | 1.840000e-17 | 100.0 |
14 | TraesCS3B01G474600 | chr5B | 95.385 | 65 | 1 | 2 | 2630 | 2692 | 253163008 | 253163072 | 5.120000e-18 | 102.0 |
15 | TraesCS3B01G474600 | chr5B | 100.000 | 28 | 0 | 0 | 61 | 88 | 477962372 | 477962345 | 5.000000e-03 | 52.8 |
16 | TraesCS3B01G474600 | chr4B | 98.305 | 59 | 0 | 1 | 2635 | 2692 | 461272287 | 461272345 | 5.120000e-18 | 102.0 |
17 | TraesCS3B01G474600 | chr4B | 96.667 | 60 | 2 | 0 | 2633 | 2692 | 126079212 | 126079271 | 1.840000e-17 | 100.0 |
18 | TraesCS3B01G474600 | chr4B | 100.000 | 29 | 0 | 0 | 62 | 90 | 638454764 | 638454736 | 1.000000e-03 | 54.7 |
19 | TraesCS3B01G474600 | chr4B | 100.000 | 28 | 0 | 0 | 64 | 91 | 317152087 | 317152060 | 5.000000e-03 | 52.8 |
20 | TraesCS3B01G474600 | chr1A | 92.958 | 71 | 1 | 4 | 2624 | 2692 | 276573267 | 276573335 | 1.840000e-17 | 100.0 |
21 | TraesCS3B01G474600 | chr2D | 76.963 | 191 | 33 | 7 | 64 | 247 | 627643001 | 627643187 | 6.620000e-17 | 99.0 |
22 | TraesCS3B01G474600 | chr2D | 88.136 | 59 | 6 | 1 | 51 | 108 | 192069444 | 192069386 | 5.190000e-08 | 69.4 |
23 | TraesCS3B01G474600 | chr2D | 90.385 | 52 | 4 | 1 | 61 | 111 | 248741712 | 248741763 | 1.870000e-07 | 67.6 |
24 | TraesCS3B01G474600 | chr7B | 87.952 | 83 | 5 | 5 | 2615 | 2695 | 620659551 | 620659472 | 3.080000e-15 | 93.5 |
25 | TraesCS3B01G474600 | chr2A | 90.000 | 70 | 7 | 0 | 242 | 311 | 379832858 | 379832789 | 1.110000e-14 | 91.6 |
26 | TraesCS3B01G474600 | chr1B | 94.286 | 35 | 2 | 0 | 60 | 94 | 391998406 | 391998440 | 1.000000e-03 | 54.7 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G474600 | chr3B | 723468082 | 723470983 | 2901 | True | 1845.266667 | 5360 | 98.666667 | 1 | 2902 | 3 | chr3B.!!$R1 | 2901 |
1 | TraesCS3B01G474600 | chr3D | 546389836 | 546392829 | 2993 | True | 733.400000 | 2113 | 92.038200 | 1 | 2902 | 5 | chr3D.!!$R1 | 2901 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
298 | 300 | 0.036388 | GAGTCCAACTGCCATCGGAA | 60.036 | 55.0 | 0.0 | 0.0 | 0.00 | 4.30 | F |
896 | 912 | 0.106469 | TGATCTCCCTGTCCCTCTCG | 60.106 | 60.0 | 0.0 | 0.0 | 0.00 | 4.04 | F |
1680 | 1754 | 0.906775 | TGCTGATGATGACTCTGCCA | 59.093 | 50.0 | 0.0 | 0.0 | 36.93 | 4.92 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1147 | 1210 | 0.033781 | TCTACCAACGGAAACCACGG | 59.966 | 55.0 | 0.0 | 0.0 | 35.23 | 4.94 | R |
1729 | 1803 | 0.108585 | TTCCTTCTTCAGCGGCTTGT | 59.891 | 50.0 | 0.0 | 0.0 | 0.00 | 3.16 | R |
2663 | 2944 | 0.109342 | CACCTTGTGTGGGAGCTTCT | 59.891 | 55.0 | 0.0 | 0.0 | 41.52 | 2.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 1.568504 | TTTCGGCCTGTATCTGAGGT | 58.431 | 50.000 | 0.00 | 0.00 | 32.60 | 3.85 |
25 | 26 | 2.891580 | TCGGCCTGTATCTGAGGTATTC | 59.108 | 50.000 | 0.00 | 0.00 | 32.60 | 1.75 |
26 | 27 | 2.028930 | CGGCCTGTATCTGAGGTATTCC | 60.029 | 54.545 | 0.00 | 0.00 | 32.60 | 3.01 |
34 | 35 | 6.124340 | TGTATCTGAGGTATTCCGTGAACTA | 58.876 | 40.000 | 0.00 | 0.00 | 39.05 | 2.24 |
83 | 84 | 0.176910 | GAGCAACTCTAGCAGACCCC | 59.823 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
116 | 118 | 1.578583 | ACCGCATAATAACCACTCGC | 58.421 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
120 | 122 | 3.994392 | CCGCATAATAACCACTCGCTTAT | 59.006 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
165 | 167 | 1.597663 | GATCAGAAAACGTATGGCCCG | 59.402 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
166 | 168 | 0.391927 | TCAGAAAACGTATGGCCCGG | 60.392 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
167 | 169 | 1.747745 | AGAAAACGTATGGCCCGGC | 60.748 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
173 | 175 | 2.816718 | GTATGGCCCGGCGAACTA | 59.183 | 61.111 | 9.30 | 0.00 | 0.00 | 2.24 |
180 | 182 | 1.951602 | GGCCCGGCGAACTATAAAAAT | 59.048 | 47.619 | 9.30 | 0.00 | 0.00 | 1.82 |
183 | 185 | 4.216902 | GGCCCGGCGAACTATAAAAATAAT | 59.783 | 41.667 | 9.30 | 0.00 | 0.00 | 1.28 |
185 | 187 | 6.072563 | GGCCCGGCGAACTATAAAAATAATTA | 60.073 | 38.462 | 9.30 | 0.00 | 0.00 | 1.40 |
186 | 188 | 6.798476 | GCCCGGCGAACTATAAAAATAATTAC | 59.202 | 38.462 | 9.30 | 0.00 | 0.00 | 1.89 |
190 | 192 | 7.300320 | GGCGAACTATAAAAATAATTACGGGG | 58.700 | 38.462 | 0.00 | 0.00 | 0.00 | 5.73 |
192 | 194 | 7.520292 | GCGAACTATAAAAATAATTACGGGGCA | 60.520 | 37.037 | 0.00 | 0.00 | 0.00 | 5.36 |
193 | 195 | 7.799914 | CGAACTATAAAAATAATTACGGGGCAC | 59.200 | 37.037 | 0.00 | 0.00 | 0.00 | 5.01 |
205 | 207 | 1.663739 | GGGGCACGGAAAAACTTCC | 59.336 | 57.895 | 0.00 | 0.00 | 37.75 | 3.46 |
208 | 210 | 0.826256 | GGCACGGAAAAACTTCCCCT | 60.826 | 55.000 | 0.00 | 0.00 | 37.84 | 4.79 |
211 | 213 | 2.303175 | CACGGAAAAACTTCCCCTTCA | 58.697 | 47.619 | 0.00 | 0.00 | 37.84 | 3.02 |
233 | 235 | 2.236395 | ACCTTTAGATTCACGAGGTGGG | 59.764 | 50.000 | 0.00 | 0.00 | 39.18 | 4.61 |
238 | 240 | 1.613630 | ATTCACGAGGTGGGAGGCT | 60.614 | 57.895 | 0.00 | 0.00 | 33.87 | 4.58 |
240 | 242 | 4.087892 | CACGAGGTGGGAGGCTGG | 62.088 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
250 | 252 | 2.524394 | GAGGCTGGCCCGAGGATA | 60.524 | 66.667 | 8.11 | 0.00 | 39.21 | 2.59 |
288 | 290 | 3.692406 | GTCGGCGGGAGTCCAACT | 61.692 | 66.667 | 12.30 | 0.00 | 0.00 | 3.16 |
289 | 291 | 3.691342 | TCGGCGGGAGTCCAACTG | 61.691 | 66.667 | 12.30 | 7.33 | 0.00 | 3.16 |
295 | 297 | 4.208632 | GGAGTCCAACTGCCATCG | 57.791 | 61.111 | 3.60 | 0.00 | 29.54 | 3.84 |
296 | 298 | 1.450312 | GGAGTCCAACTGCCATCGG | 60.450 | 63.158 | 3.60 | 0.00 | 29.54 | 4.18 |
297 | 299 | 1.596934 | GAGTCCAACTGCCATCGGA | 59.403 | 57.895 | 0.00 | 0.00 | 0.00 | 4.55 |
298 | 300 | 0.036388 | GAGTCCAACTGCCATCGGAA | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
299 | 301 | 0.400213 | AGTCCAACTGCCATCGGAAA | 59.600 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
300 | 302 | 0.521735 | GTCCAACTGCCATCGGAAAC | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
301 | 303 | 0.400213 | TCCAACTGCCATCGGAAACT | 59.600 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
302 | 304 | 1.202879 | TCCAACTGCCATCGGAAACTT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
303 | 305 | 1.200020 | CCAACTGCCATCGGAAACTTC | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
304 | 306 | 1.879380 | CAACTGCCATCGGAAACTTCA | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
305 | 307 | 2.489329 | CAACTGCCATCGGAAACTTCAT | 59.511 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
306 | 308 | 3.627395 | ACTGCCATCGGAAACTTCATA | 57.373 | 42.857 | 0.00 | 0.00 | 0.00 | 2.15 |
307 | 309 | 3.535561 | ACTGCCATCGGAAACTTCATAG | 58.464 | 45.455 | 0.00 | 0.00 | 0.00 | 2.23 |
308 | 310 | 2.288666 | TGCCATCGGAAACTTCATAGC | 58.711 | 47.619 | 0.00 | 0.00 | 0.00 | 2.97 |
309 | 311 | 2.092968 | TGCCATCGGAAACTTCATAGCT | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
310 | 312 | 2.545946 | GCCATCGGAAACTTCATAGCTC | 59.454 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
311 | 313 | 2.797156 | CCATCGGAAACTTCATAGCTCG | 59.203 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
312 | 314 | 3.490933 | CCATCGGAAACTTCATAGCTCGA | 60.491 | 47.826 | 0.00 | 0.00 | 0.00 | 4.04 |
313 | 315 | 3.861276 | TCGGAAACTTCATAGCTCGAA | 57.139 | 42.857 | 0.00 | 0.00 | 0.00 | 3.71 |
314 | 316 | 4.182693 | TCGGAAACTTCATAGCTCGAAA | 57.817 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
315 | 317 | 4.174009 | TCGGAAACTTCATAGCTCGAAAG | 58.826 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
316 | 318 | 4.082408 | TCGGAAACTTCATAGCTCGAAAGA | 60.082 | 41.667 | 8.42 | 0.00 | 39.12 | 2.52 |
317 | 319 | 4.031878 | CGGAAACTTCATAGCTCGAAAGAC | 59.968 | 45.833 | 8.42 | 1.72 | 35.39 | 3.01 |
318 | 320 | 4.330347 | GGAAACTTCATAGCTCGAAAGACC | 59.670 | 45.833 | 8.42 | 5.77 | 35.39 | 3.85 |
319 | 321 | 3.152261 | ACTTCATAGCTCGAAAGACCG | 57.848 | 47.619 | 8.42 | 0.00 | 35.39 | 4.79 |
320 | 322 | 2.492484 | ACTTCATAGCTCGAAAGACCGT | 59.508 | 45.455 | 8.42 | 0.00 | 35.39 | 4.83 |
321 | 323 | 2.846039 | TCATAGCTCGAAAGACCGTC | 57.154 | 50.000 | 0.00 | 0.00 | 35.39 | 4.79 |
322 | 324 | 1.063616 | TCATAGCTCGAAAGACCGTCG | 59.936 | 52.381 | 0.00 | 0.00 | 39.88 | 5.12 |
323 | 325 | 0.381089 | ATAGCTCGAAAGACCGTCGG | 59.619 | 55.000 | 10.48 | 10.48 | 39.01 | 4.79 |
324 | 326 | 2.262471 | TAGCTCGAAAGACCGTCGGC | 62.262 | 60.000 | 12.28 | 4.24 | 39.01 | 5.54 |
325 | 327 | 2.874780 | CTCGAAAGACCGTCGGCG | 60.875 | 66.667 | 12.28 | 0.29 | 39.01 | 6.46 |
354 | 356 | 3.627395 | ACTGCCATCGGAAACTTCATA | 57.373 | 42.857 | 0.00 | 0.00 | 0.00 | 2.15 |
359 | 361 | 2.797156 | CCATCGGAAACTTCATAGCTCG | 59.203 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
389 | 391 | 3.885521 | CGCCCGTCCGTCCTAGTC | 61.886 | 72.222 | 0.00 | 0.00 | 0.00 | 2.59 |
390 | 392 | 3.885521 | GCCCGTCCGTCCTAGTCG | 61.886 | 72.222 | 0.00 | 0.00 | 0.00 | 4.18 |
391 | 393 | 3.885521 | CCCGTCCGTCCTAGTCGC | 61.886 | 72.222 | 0.00 | 0.00 | 0.00 | 5.19 |
392 | 394 | 3.885521 | CCGTCCGTCCTAGTCGCC | 61.886 | 72.222 | 0.00 | 0.00 | 0.00 | 5.54 |
393 | 395 | 4.233635 | CGTCCGTCCTAGTCGCCG | 62.234 | 72.222 | 0.00 | 0.00 | 0.00 | 6.46 |
474 | 476 | 3.752796 | GGATCAATCCGGACACGAA | 57.247 | 52.632 | 6.12 | 0.00 | 44.60 | 3.85 |
475 | 477 | 2.240493 | GGATCAATCCGGACACGAAT | 57.760 | 50.000 | 6.12 | 0.00 | 44.60 | 3.34 |
514 | 517 | 4.880537 | CCGGCCACAGCGAGCTAG | 62.881 | 72.222 | 2.24 | 0.00 | 41.24 | 3.42 |
541 | 544 | 3.533720 | GGATCCATCCGACCACGA | 58.466 | 61.111 | 6.95 | 0.00 | 42.66 | 4.35 |
553 | 556 | 0.878961 | GACCACGAACGAGTTGCCTT | 60.879 | 55.000 | 0.14 | 0.00 | 0.00 | 4.35 |
560 | 563 | 2.427506 | GAACGAGTTGCCTTCTGGATT | 58.572 | 47.619 | 0.00 | 0.00 | 34.57 | 3.01 |
565 | 568 | 3.441572 | CGAGTTGCCTTCTGGATTGATTT | 59.558 | 43.478 | 0.00 | 0.00 | 34.57 | 2.17 |
576 | 579 | 2.093921 | TGGATTGATTTGGCGACTACGA | 60.094 | 45.455 | 0.00 | 0.00 | 42.66 | 3.43 |
577 | 580 | 2.933906 | GGATTGATTTGGCGACTACGAA | 59.066 | 45.455 | 0.00 | 0.00 | 42.66 | 3.85 |
583 | 586 | 1.236616 | TTGGCGACTACGAAGACGGA | 61.237 | 55.000 | 0.00 | 0.00 | 44.46 | 4.69 |
588 | 591 | 1.790838 | CGACTACGAAGACGGAAGCTG | 60.791 | 57.143 | 0.00 | 0.00 | 44.46 | 4.24 |
594 | 597 | 2.159366 | ACGAAGACGGAAGCTGACTATG | 60.159 | 50.000 | 0.00 | 0.00 | 44.46 | 2.23 |
601 | 604 | 2.271800 | GGAAGCTGACTATGAACACGG | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
603 | 606 | 3.585862 | GAAGCTGACTATGAACACGGAA | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
606 | 609 | 3.064207 | GCTGACTATGAACACGGAAACA | 58.936 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
610 | 613 | 4.876679 | TGACTATGAACACGGAAACAAACA | 59.123 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
631 | 634 | 4.127171 | CAAGAGGAAGAAAAAGACGTGGA | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
632 | 635 | 3.996480 | AGAGGAAGAAAAAGACGTGGAG | 58.004 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
687 | 691 | 1.611977 | GTTTAAAGGTTTGCTCGGCCT | 59.388 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
689 | 693 | 0.672401 | TAAAGGTTTGCTCGGCCTCG | 60.672 | 55.000 | 0.00 | 0.00 | 37.82 | 4.63 |
691 | 695 | 4.699522 | GGTTTGCTCGGCCTCGGT | 62.700 | 66.667 | 0.00 | 0.00 | 36.95 | 4.69 |
693 | 697 | 1.375013 | GTTTGCTCGGCCTCGGTTA | 60.375 | 57.895 | 0.00 | 0.00 | 36.95 | 2.85 |
736 | 740 | 4.561735 | TTTCAGTTTCGCAGTTTAAGGG | 57.438 | 40.909 | 0.00 | 0.00 | 0.00 | 3.95 |
738 | 742 | 3.135994 | TCAGTTTCGCAGTTTAAGGGTC | 58.864 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
750 | 754 | 3.611766 | TTAAGGGTCTGCTAGAGTTGC | 57.388 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
757 | 761 | 3.697045 | GGTCTGCTAGAGTTGCTCTAAGA | 59.303 | 47.826 | 7.22 | 5.68 | 41.74 | 2.10 |
767 | 774 | 5.656416 | AGAGTTGCTCTAAGACTGCTCTAAT | 59.344 | 40.000 | 0.00 | 0.00 | 39.28 | 1.73 |
771 | 778 | 7.978975 | AGTTGCTCTAAGACTGCTCTAATTTAG | 59.021 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
881 | 897 | 2.746359 | CGCCCCCTCCATCTGATC | 59.254 | 66.667 | 0.00 | 0.00 | 0.00 | 2.92 |
882 | 898 | 1.840650 | CGCCCCCTCCATCTGATCT | 60.841 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
883 | 899 | 1.825281 | CGCCCCCTCCATCTGATCTC | 61.825 | 65.000 | 0.00 | 0.00 | 0.00 | 2.75 |
884 | 900 | 1.487850 | GCCCCCTCCATCTGATCTCC | 61.488 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
896 | 912 | 0.106469 | TGATCTCCCTGTCCCTCTCG | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
916 | 932 | 2.895372 | CGCCCGCATTACACCTCC | 60.895 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
948 | 964 | 1.065345 | AGCAGCAGATTCATCAGCAGT | 60.065 | 47.619 | 6.91 | 0.00 | 41.18 | 4.40 |
1158 | 1221 | 1.732259 | CTGAGAAATCCGTGGTTTCCG | 59.268 | 52.381 | 6.15 | 0.00 | 36.48 | 4.30 |
1169 | 1232 | 2.546373 | CGTGGTTTCCGTTGGTAGAGAA | 60.546 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1170 | 1233 | 3.671716 | GTGGTTTCCGTTGGTAGAGAAT | 58.328 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
1171 | 1234 | 4.618927 | CGTGGTTTCCGTTGGTAGAGAATA | 60.619 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
1172 | 1235 | 4.868734 | GTGGTTTCCGTTGGTAGAGAATAG | 59.131 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
1173 | 1236 | 3.869832 | GGTTTCCGTTGGTAGAGAATAGC | 59.130 | 47.826 | 0.00 | 0.00 | 0.00 | 2.97 |
1174 | 1237 | 4.501071 | GTTTCCGTTGGTAGAGAATAGCA | 58.499 | 43.478 | 0.00 | 0.00 | 0.00 | 3.49 |
1198 | 1261 | 2.677902 | GCATAGCATAGCGGGCAGAATA | 60.678 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
1227 | 1290 | 1.758514 | GCTCGGGATCTCTGACCCA | 60.759 | 63.158 | 0.00 | 0.00 | 45.83 | 4.51 |
1246 | 1309 | 3.261897 | CCCATTTCACTAGTCTGGTCTGT | 59.738 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
1349 | 1412 | 4.497291 | TGGTAGTTTCTGTTGGTGTTCT | 57.503 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
1387 | 1451 | 4.511454 | TGATTCGTCTTGTTTCTGGTTCAG | 59.489 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1474 | 1544 | 4.842531 | TCTTGCTTACAGGGATCATGAA | 57.157 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
1475 | 1545 | 5.378230 | TCTTGCTTACAGGGATCATGAAT | 57.622 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
1476 | 1546 | 5.759059 | TCTTGCTTACAGGGATCATGAATT | 58.241 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
1477 | 1547 | 5.824624 | TCTTGCTTACAGGGATCATGAATTC | 59.175 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1478 | 1548 | 5.114764 | TGCTTACAGGGATCATGAATTCA | 57.885 | 39.130 | 11.26 | 11.26 | 0.00 | 2.57 |
1479 | 1549 | 5.698104 | TGCTTACAGGGATCATGAATTCAT | 58.302 | 37.500 | 15.36 | 15.36 | 36.96 | 2.57 |
1504 | 1574 | 3.501349 | TCATGCCATCTAGTCTAGGGTC | 58.499 | 50.000 | 7.05 | 0.00 | 0.00 | 4.46 |
1525 | 1595 | 1.009829 | GATCTGCACCTTGCTTACCG | 58.990 | 55.000 | 0.00 | 0.00 | 45.31 | 4.02 |
1541 | 1615 | 5.184479 | TGCTTACCGGTCATAGTATCATACC | 59.816 | 44.000 | 12.40 | 0.00 | 0.00 | 2.73 |
1542 | 1616 | 5.184479 | GCTTACCGGTCATAGTATCATACCA | 59.816 | 44.000 | 12.40 | 0.00 | 0.00 | 3.25 |
1543 | 1617 | 6.579666 | TTACCGGTCATAGTATCATACCAC | 57.420 | 41.667 | 12.40 | 0.00 | 0.00 | 4.16 |
1574 | 1648 | 7.634671 | TTCAATCAAAGTGCTATGTGATCAT | 57.365 | 32.000 | 0.00 | 0.00 | 38.00 | 2.45 |
1610 | 1684 | 7.283354 | CCTCAAACTTGGTATATTCTTTCCTCC | 59.717 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
1628 | 1702 | 3.323403 | CCTCCACATTTGGGCAAAACTAA | 59.677 | 43.478 | 0.00 | 0.00 | 44.11 | 2.24 |
1631 | 1705 | 6.279513 | TCCACATTTGGGCAAAACTAATAG | 57.720 | 37.500 | 0.00 | 0.00 | 44.11 | 1.73 |
1639 | 1713 | 5.437060 | TGGGCAAAACTAATAGATGTCCTC | 58.563 | 41.667 | 13.75 | 0.00 | 36.72 | 3.71 |
1680 | 1754 | 0.906775 | TGCTGATGATGACTCTGCCA | 59.093 | 50.000 | 0.00 | 0.00 | 36.93 | 4.92 |
1729 | 1803 | 7.265599 | TCTATGGTCTCCCTGAAAAATACAA | 57.734 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1751 | 1825 | 1.003233 | GCCGCTGAAGAAGGAACCT | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
1754 | 1828 | 1.134670 | CCGCTGAAGAAGGAACCTAGG | 60.135 | 57.143 | 7.41 | 7.41 | 0.00 | 3.02 |
1852 | 1926 | 3.381272 | CCGAGGATGCAATTTGGTTGTAT | 59.619 | 43.478 | 0.00 | 0.00 | 44.44 | 2.29 |
1856 | 1930 | 6.238731 | CGAGGATGCAATTTGGTTGTATACAT | 60.239 | 38.462 | 6.36 | 0.00 | 43.84 | 2.29 |
1910 | 1984 | 2.955614 | ACGACGAAATGACCTTACTGG | 58.044 | 47.619 | 0.00 | 0.00 | 42.93 | 4.00 |
1927 | 2001 | 3.321950 | ACTGGAATAGATCAAGGGAGGG | 58.678 | 50.000 | 0.00 | 0.00 | 32.84 | 4.30 |
1947 | 2021 | 3.826157 | GGGGATCATTTCTTTGTCACACA | 59.174 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
1948 | 2022 | 4.321230 | GGGGATCATTTCTTTGTCACACAC | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
1949 | 2023 | 4.278170 | GGGATCATTTCTTTGTCACACACA | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
1986 | 2061 | 3.119245 | GCTTCCGTTATGAGGTACAGACA | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2003 | 2078 | 3.809832 | CAGACACGAGTTCAAATCCTTGT | 59.190 | 43.478 | 0.00 | 0.00 | 33.94 | 3.16 |
2009 | 2084 | 5.411361 | CACGAGTTCAAATCCTTGTTATGGA | 59.589 | 40.000 | 0.00 | 0.00 | 38.06 | 3.41 |
2015 | 2090 | 5.200483 | TCAAATCCTTGTTATGGACCCATC | 58.800 | 41.667 | 4.57 | 0.00 | 36.30 | 3.51 |
2029 | 2106 | 9.852784 | TTATGGACCCATCCTCTTATAATAAGA | 57.147 | 33.333 | 4.57 | 0.00 | 46.43 | 2.10 |
2091 | 2169 | 1.836802 | TATCCAATTGCAGCACAGCA | 58.163 | 45.000 | 0.00 | 0.00 | 43.99 | 4.41 |
2113 | 2191 | 1.384191 | GGGGCAATGGACCTTCTGT | 59.616 | 57.895 | 0.00 | 0.00 | 44.19 | 3.41 |
2129 | 2207 | 7.255660 | GGACCTTCTGTATACTCTACTGAATGG | 60.256 | 44.444 | 4.17 | 9.92 | 35.74 | 3.16 |
2142 | 2220 | 1.004044 | CTGAATGGGCCAGTCTGACTT | 59.996 | 52.381 | 31.36 | 10.78 | 31.07 | 3.01 |
2159 | 2237 | 6.868864 | GTCTGACTTAATTACTTCTGTCTGCA | 59.131 | 38.462 | 0.00 | 0.00 | 0.00 | 4.41 |
2233 | 2311 | 4.157656 | AGACTGTCAGACTGCTCTTCATAC | 59.842 | 45.833 | 10.88 | 0.00 | 0.00 | 2.39 |
2263 | 2341 | 5.705905 | ACCAGCTGTCTAGTTGAAAATAACC | 59.294 | 40.000 | 13.81 | 0.00 | 37.32 | 2.85 |
2339 | 2419 | 8.050778 | TGGCTATATAAAGTTTCAAACACCAG | 57.949 | 34.615 | 2.41 | 0.00 | 0.00 | 4.00 |
2404 | 2484 | 4.822026 | AGAGAAACCAATTGTACGAGGAG | 58.178 | 43.478 | 4.43 | 0.00 | 0.00 | 3.69 |
2445 | 2525 | 3.920231 | TTGGTCATCTCTTCTCCCATG | 57.080 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
2467 | 2547 | 2.859165 | TTCCCTTGTGCTCTGGTTAG | 57.141 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2528 | 2608 | 6.640499 | CGTAGGCAAAAGTGAATGAAAATTCA | 59.360 | 34.615 | 0.00 | 0.00 | 42.14 | 2.57 |
2529 | 2609 | 7.148918 | CGTAGGCAAAAGTGAATGAAAATTCAG | 60.149 | 37.037 | 1.48 | 0.00 | 40.77 | 3.02 |
2530 | 2610 | 5.993441 | AGGCAAAAGTGAATGAAAATTCAGG | 59.007 | 36.000 | 1.48 | 0.00 | 40.77 | 3.86 |
2531 | 2611 | 5.759763 | GGCAAAAGTGAATGAAAATTCAGGT | 59.240 | 36.000 | 1.48 | 0.00 | 40.77 | 4.00 |
2532 | 2612 | 6.293027 | GGCAAAAGTGAATGAAAATTCAGGTG | 60.293 | 38.462 | 1.48 | 0.59 | 40.77 | 4.00 |
2533 | 2613 | 6.652245 | CAAAAGTGAATGAAAATTCAGGTGC | 58.348 | 36.000 | 1.48 | 0.00 | 40.77 | 5.01 |
2534 | 2614 | 5.534207 | AAGTGAATGAAAATTCAGGTGCA | 57.466 | 34.783 | 1.48 | 0.00 | 40.77 | 4.57 |
2535 | 2615 | 4.874970 | AGTGAATGAAAATTCAGGTGCAC | 58.125 | 39.130 | 8.80 | 8.80 | 40.77 | 4.57 |
2536 | 2616 | 4.341806 | AGTGAATGAAAATTCAGGTGCACA | 59.658 | 37.500 | 20.43 | 0.00 | 40.77 | 4.57 |
2537 | 2617 | 4.445385 | GTGAATGAAAATTCAGGTGCACAC | 59.555 | 41.667 | 20.43 | 8.23 | 40.77 | 3.82 |
2560 | 2640 | 3.015145 | CCCCCTCCGGTGACCATT | 61.015 | 66.667 | 4.76 | 0.00 | 0.00 | 3.16 |
2561 | 2641 | 1.691337 | CCCCCTCCGGTGACCATTA | 60.691 | 63.158 | 4.76 | 0.00 | 0.00 | 1.90 |
2562 | 2642 | 1.276140 | CCCCCTCCGGTGACCATTAA | 61.276 | 60.000 | 4.76 | 0.00 | 0.00 | 1.40 |
2563 | 2643 | 0.621609 | CCCCTCCGGTGACCATTAAA | 59.378 | 55.000 | 4.76 | 0.00 | 0.00 | 1.52 |
2564 | 2644 | 1.680860 | CCCCTCCGGTGACCATTAAAC | 60.681 | 57.143 | 4.76 | 0.00 | 0.00 | 2.01 |
2565 | 2645 | 1.365699 | CCTCCGGTGACCATTAAACG | 58.634 | 55.000 | 4.76 | 0.00 | 0.00 | 3.60 |
2566 | 2646 | 1.066716 | CCTCCGGTGACCATTAAACGA | 60.067 | 52.381 | 4.76 | 0.00 | 0.00 | 3.85 |
2567 | 2647 | 2.613474 | CCTCCGGTGACCATTAAACGAA | 60.613 | 50.000 | 4.76 | 0.00 | 0.00 | 3.85 |
2568 | 2648 | 2.671396 | CTCCGGTGACCATTAAACGAAG | 59.329 | 50.000 | 1.11 | 0.00 | 0.00 | 3.79 |
2569 | 2649 | 1.735571 | CCGGTGACCATTAAACGAAGG | 59.264 | 52.381 | 1.11 | 0.00 | 0.00 | 3.46 |
2570 | 2650 | 2.419667 | CGGTGACCATTAAACGAAGGT | 58.580 | 47.619 | 1.11 | 0.00 | 37.00 | 3.50 |
2571 | 2651 | 2.809696 | CGGTGACCATTAAACGAAGGTT | 59.190 | 45.455 | 1.11 | 0.00 | 38.22 | 3.50 |
2660 | 2941 | 1.692411 | AAAAAGGACAGACCCAGTGC | 58.308 | 50.000 | 0.00 | 0.00 | 40.05 | 4.40 |
2661 | 2942 | 0.550914 | AAAAGGACAGACCCAGTGCA | 59.449 | 50.000 | 0.00 | 0.00 | 40.05 | 4.57 |
2662 | 2943 | 0.773644 | AAAGGACAGACCCAGTGCAT | 59.226 | 50.000 | 0.00 | 0.00 | 40.05 | 3.96 |
2663 | 2944 | 1.656587 | AAGGACAGACCCAGTGCATA | 58.343 | 50.000 | 0.00 | 0.00 | 40.05 | 3.14 |
2664 | 2945 | 1.198713 | AGGACAGACCCAGTGCATAG | 58.801 | 55.000 | 0.00 | 0.00 | 40.05 | 2.23 |
2665 | 2946 | 1.195115 | GGACAGACCCAGTGCATAGA | 58.805 | 55.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2666 | 2947 | 1.555075 | GGACAGACCCAGTGCATAGAA | 59.445 | 52.381 | 0.00 | 0.00 | 0.00 | 2.10 |
2667 | 2948 | 2.419297 | GGACAGACCCAGTGCATAGAAG | 60.419 | 54.545 | 0.00 | 0.00 | 0.00 | 2.85 |
2668 | 2949 | 1.065854 | ACAGACCCAGTGCATAGAAGC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2669 | 2950 | 1.209019 | CAGACCCAGTGCATAGAAGCT | 59.791 | 52.381 | 0.00 | 0.00 | 34.99 | 3.74 |
2670 | 2951 | 1.484240 | AGACCCAGTGCATAGAAGCTC | 59.516 | 52.381 | 0.00 | 0.00 | 34.99 | 4.09 |
2671 | 2952 | 0.543749 | ACCCAGTGCATAGAAGCTCC | 59.456 | 55.000 | 0.00 | 0.00 | 34.99 | 4.70 |
2672 | 2953 | 0.179034 | CCCAGTGCATAGAAGCTCCC | 60.179 | 60.000 | 0.00 | 0.00 | 34.99 | 4.30 |
2673 | 2954 | 0.543277 | CCAGTGCATAGAAGCTCCCA | 59.457 | 55.000 | 0.00 | 0.00 | 34.99 | 4.37 |
2674 | 2955 | 1.661341 | CAGTGCATAGAAGCTCCCAC | 58.339 | 55.000 | 0.00 | 0.00 | 34.99 | 4.61 |
2675 | 2956 | 1.065926 | CAGTGCATAGAAGCTCCCACA | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 4.17 |
2676 | 2957 | 1.065854 | AGTGCATAGAAGCTCCCACAC | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 3.82 |
2677 | 2958 | 0.983467 | TGCATAGAAGCTCCCACACA | 59.017 | 50.000 | 0.00 | 0.00 | 34.99 | 3.72 |
2678 | 2959 | 1.350684 | TGCATAGAAGCTCCCACACAA | 59.649 | 47.619 | 0.00 | 0.00 | 34.99 | 3.33 |
2679 | 2960 | 2.012673 | GCATAGAAGCTCCCACACAAG | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2680 | 2961 | 2.636830 | CATAGAAGCTCCCACACAAGG | 58.363 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
2681 | 2962 | 1.729586 | TAGAAGCTCCCACACAAGGT | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2689 | 2970 | 4.481195 | CACACAAGGTGGGGTCTG | 57.519 | 61.111 | 1.07 | 0.00 | 44.04 | 3.51 |
2690 | 2971 | 1.228245 | CACACAAGGTGGGGTCTGG | 60.228 | 63.158 | 1.07 | 0.00 | 44.04 | 3.86 |
2691 | 2972 | 2.436109 | CACAAGGTGGGGTCTGGG | 59.564 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2692 | 2973 | 2.038762 | ACAAGGTGGGGTCTGGGT | 60.039 | 61.111 | 0.00 | 0.00 | 0.00 | 4.51 |
2693 | 2974 | 1.131303 | CACAAGGTGGGGTCTGGGTA | 61.131 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2694 | 2975 | 0.840722 | ACAAGGTGGGGTCTGGGTAG | 60.841 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2695 | 2976 | 0.546747 | CAAGGTGGGGTCTGGGTAGA | 60.547 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2696 | 2977 | 0.252742 | AAGGTGGGGTCTGGGTAGAG | 60.253 | 60.000 | 0.00 | 0.00 | 32.48 | 2.43 |
2708 | 2989 | 6.610741 | GTCTGGGTAGAGCAAGAAATATTG | 57.389 | 41.667 | 0.00 | 0.00 | 32.48 | 1.90 |
2709 | 2990 | 6.116126 | GTCTGGGTAGAGCAAGAAATATTGT | 58.884 | 40.000 | 0.00 | 0.00 | 32.48 | 2.71 |
2710 | 2991 | 6.037610 | GTCTGGGTAGAGCAAGAAATATTGTG | 59.962 | 42.308 | 0.00 | 0.00 | 32.48 | 3.33 |
2711 | 2992 | 6.061022 | TGGGTAGAGCAAGAAATATTGTGA | 57.939 | 37.500 | 0.00 | 0.00 | 32.56 | 3.58 |
2712 | 2993 | 6.115446 | TGGGTAGAGCAAGAAATATTGTGAG | 58.885 | 40.000 | 0.00 | 0.00 | 32.56 | 3.51 |
2713 | 2994 | 5.529060 | GGGTAGAGCAAGAAATATTGTGAGG | 59.471 | 44.000 | 0.00 | 0.00 | 32.56 | 3.86 |
2714 | 2995 | 6.349300 | GGTAGAGCAAGAAATATTGTGAGGA | 58.651 | 40.000 | 0.00 | 0.00 | 32.56 | 3.71 |
2715 | 2996 | 6.823689 | GGTAGAGCAAGAAATATTGTGAGGAA | 59.176 | 38.462 | 0.00 | 0.00 | 32.56 | 3.36 |
2716 | 2997 | 7.336931 | GGTAGAGCAAGAAATATTGTGAGGAAA | 59.663 | 37.037 | 0.00 | 0.00 | 32.56 | 3.13 |
2717 | 2998 | 7.951347 | AGAGCAAGAAATATTGTGAGGAAAT | 57.049 | 32.000 | 0.00 | 0.00 | 32.56 | 2.17 |
2767 | 3049 | 6.016693 | TCTCAAAATTTTCTCATTGCACGGTA | 60.017 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
2798 | 3080 | 2.656560 | AACAGCGCCTTACAGACTAG | 57.343 | 50.000 | 2.29 | 0.00 | 0.00 | 2.57 |
2806 | 3088 | 3.002862 | CGCCTTACAGACTAGCTCTAGTG | 59.997 | 52.174 | 13.74 | 4.08 | 45.63 | 2.74 |
2823 | 3105 | 6.404074 | GCTCTAGTGGTCTTCAATGGAAATTG | 60.404 | 42.308 | 0.00 | 0.00 | 30.93 | 2.32 |
2838 | 3120 | 4.834496 | TGGAAATTGTTCTCCTCTGCATTT | 59.166 | 37.500 | 0.00 | 0.00 | 33.92 | 2.32 |
2839 | 3121 | 5.166398 | GGAAATTGTTCTCCTCTGCATTTG | 58.834 | 41.667 | 0.00 | 0.00 | 33.92 | 2.32 |
2880 | 3162 | 2.729028 | TAGGTCCAGCTAAATTGCCC | 57.271 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2895 | 3177 | 1.962306 | GCCCGGTACAAGTTGCGAA | 60.962 | 57.895 | 1.81 | 0.00 | 0.00 | 4.70 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 2.028930 | CGGAATACCTCAGATACAGGCC | 60.029 | 54.545 | 0.00 | 0.00 | 33.84 | 5.19 |
16 | 17 | 7.123098 | TGAGTTTATAGTTCACGGAATACCTCA | 59.877 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
25 | 26 | 7.063074 | CCTGTAAAGTGAGTTTATAGTTCACGG | 59.937 | 40.741 | 13.25 | 0.33 | 44.45 | 4.94 |
26 | 27 | 7.597743 | ACCTGTAAAGTGAGTTTATAGTTCACG | 59.402 | 37.037 | 13.25 | 3.29 | 44.45 | 4.35 |
34 | 35 | 4.251268 | GCGGACCTGTAAAGTGAGTTTAT | 58.749 | 43.478 | 0.00 | 0.00 | 33.11 | 1.40 |
83 | 84 | 2.078341 | GCGGTTGGCGCGTTTTAAG | 61.078 | 57.895 | 8.43 | 0.00 | 0.00 | 1.85 |
154 | 156 | 4.825252 | GTTCGCCGGGCCATACGT | 62.825 | 66.667 | 14.55 | 0.00 | 0.00 | 3.57 |
165 | 167 | 7.300320 | CCCCGTAATTATTTTTATAGTTCGCC | 58.700 | 38.462 | 0.00 | 0.00 | 0.00 | 5.54 |
166 | 168 | 6.798476 | GCCCCGTAATTATTTTTATAGTTCGC | 59.202 | 38.462 | 0.00 | 0.00 | 0.00 | 4.70 |
167 | 169 | 7.799914 | GTGCCCCGTAATTATTTTTATAGTTCG | 59.200 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
173 | 175 | 5.131784 | TCCGTGCCCCGTAATTATTTTTAT | 58.868 | 37.500 | 0.00 | 0.00 | 33.66 | 1.40 |
180 | 182 | 2.486472 | TTTTCCGTGCCCCGTAATTA | 57.514 | 45.000 | 0.00 | 0.00 | 33.66 | 1.40 |
183 | 185 | 0.179023 | AGTTTTTCCGTGCCCCGTAA | 60.179 | 50.000 | 0.00 | 0.00 | 33.66 | 3.18 |
185 | 187 | 1.449726 | GAAGTTTTTCCGTGCCCCGT | 61.450 | 55.000 | 0.00 | 0.00 | 33.66 | 5.28 |
186 | 188 | 1.284715 | GAAGTTTTTCCGTGCCCCG | 59.715 | 57.895 | 0.00 | 0.00 | 0.00 | 5.73 |
205 | 207 | 4.575885 | TCGTGAATCTAAAGGTTGAAGGG | 58.424 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
208 | 210 | 4.994852 | CACCTCGTGAATCTAAAGGTTGAA | 59.005 | 41.667 | 0.00 | 0.00 | 38.27 | 2.69 |
211 | 213 | 3.307480 | CCCACCTCGTGAATCTAAAGGTT | 60.307 | 47.826 | 0.00 | 0.00 | 38.27 | 3.50 |
233 | 235 | 2.524394 | TATCCTCGGGCCAGCCTC | 60.524 | 66.667 | 4.39 | 0.00 | 36.10 | 4.70 |
238 | 240 | 1.951923 | TACAGGGTATCCTCGGGCCA | 61.952 | 60.000 | 4.39 | 0.00 | 42.67 | 5.36 |
240 | 242 | 2.226962 | TATACAGGGTATCCTCGGGC | 57.773 | 55.000 | 0.00 | 0.00 | 42.67 | 6.13 |
250 | 252 | 2.223971 | CGGTCTTTCGCATATACAGGGT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
277 | 279 | 1.450312 | CGATGGCAGTTGGACTCCC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
278 | 280 | 1.450312 | CCGATGGCAGTTGGACTCC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
279 | 281 | 0.036388 | TTCCGATGGCAGTTGGACTC | 60.036 | 55.000 | 4.79 | 0.00 | 31.25 | 3.36 |
280 | 282 | 0.400213 | TTTCCGATGGCAGTTGGACT | 59.600 | 50.000 | 4.79 | 0.00 | 31.25 | 3.85 |
281 | 283 | 0.521735 | GTTTCCGATGGCAGTTGGAC | 59.478 | 55.000 | 4.79 | 0.00 | 31.25 | 4.02 |
282 | 284 | 0.400213 | AGTTTCCGATGGCAGTTGGA | 59.600 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
283 | 285 | 1.200020 | GAAGTTTCCGATGGCAGTTGG | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
284 | 286 | 1.879380 | TGAAGTTTCCGATGGCAGTTG | 59.121 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
285 | 287 | 2.270352 | TGAAGTTTCCGATGGCAGTT | 57.730 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
286 | 288 | 2.496899 | ATGAAGTTTCCGATGGCAGT | 57.503 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
287 | 289 | 2.289002 | GCTATGAAGTTTCCGATGGCAG | 59.711 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
288 | 290 | 2.092968 | AGCTATGAAGTTTCCGATGGCA | 60.093 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
289 | 291 | 2.545946 | GAGCTATGAAGTTTCCGATGGC | 59.454 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
290 | 292 | 2.797156 | CGAGCTATGAAGTTTCCGATGG | 59.203 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
291 | 293 | 3.706698 | TCGAGCTATGAAGTTTCCGATG | 58.293 | 45.455 | 0.00 | 0.00 | 0.00 | 3.84 |
292 | 294 | 4.386867 | TTCGAGCTATGAAGTTTCCGAT | 57.613 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
293 | 295 | 3.861276 | TTCGAGCTATGAAGTTTCCGA | 57.139 | 42.857 | 0.00 | 0.00 | 0.00 | 4.55 |
294 | 296 | 4.031878 | GTCTTTCGAGCTATGAAGTTTCCG | 59.968 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
295 | 297 | 4.330347 | GGTCTTTCGAGCTATGAAGTTTCC | 59.670 | 45.833 | 0.00 | 0.00 | 34.86 | 3.13 |
296 | 298 | 4.031878 | CGGTCTTTCGAGCTATGAAGTTTC | 59.968 | 45.833 | 0.00 | 0.00 | 35.54 | 2.78 |
297 | 299 | 3.927142 | CGGTCTTTCGAGCTATGAAGTTT | 59.073 | 43.478 | 0.00 | 0.00 | 35.54 | 2.66 |
298 | 300 | 3.056749 | ACGGTCTTTCGAGCTATGAAGTT | 60.057 | 43.478 | 0.00 | 0.00 | 35.54 | 2.66 |
299 | 301 | 2.492484 | ACGGTCTTTCGAGCTATGAAGT | 59.508 | 45.455 | 0.00 | 0.00 | 35.54 | 3.01 |
300 | 302 | 3.109619 | GACGGTCTTTCGAGCTATGAAG | 58.890 | 50.000 | 0.00 | 0.00 | 35.54 | 3.02 |
301 | 303 | 2.477357 | CGACGGTCTTTCGAGCTATGAA | 60.477 | 50.000 | 6.57 | 0.00 | 38.85 | 2.57 |
302 | 304 | 1.063616 | CGACGGTCTTTCGAGCTATGA | 59.936 | 52.381 | 6.57 | 0.00 | 38.85 | 2.15 |
303 | 305 | 1.467875 | CGACGGTCTTTCGAGCTATG | 58.532 | 55.000 | 6.57 | 0.00 | 38.85 | 2.23 |
304 | 306 | 0.381089 | CCGACGGTCTTTCGAGCTAT | 59.619 | 55.000 | 5.48 | 0.00 | 38.85 | 2.97 |
305 | 307 | 1.798735 | CCGACGGTCTTTCGAGCTA | 59.201 | 57.895 | 5.48 | 0.00 | 38.85 | 3.32 |
306 | 308 | 2.567049 | CCGACGGTCTTTCGAGCT | 59.433 | 61.111 | 5.48 | 0.00 | 38.85 | 4.09 |
307 | 309 | 3.179939 | GCCGACGGTCTTTCGAGC | 61.180 | 66.667 | 16.73 | 0.00 | 38.85 | 5.03 |
308 | 310 | 2.874780 | CGCCGACGGTCTTTCGAG | 60.875 | 66.667 | 16.73 | 0.00 | 38.85 | 4.04 |
309 | 311 | 3.318539 | CTCGCCGACGGTCTTTCGA | 62.319 | 63.158 | 16.73 | 13.99 | 38.85 | 3.71 |
310 | 312 | 2.874780 | CTCGCCGACGGTCTTTCG | 60.875 | 66.667 | 16.73 | 10.13 | 40.63 | 3.46 |
311 | 313 | 1.514443 | CTCTCGCCGACGGTCTTTC | 60.514 | 63.158 | 16.73 | 0.00 | 40.63 | 2.62 |
312 | 314 | 2.197643 | GACTCTCGCCGACGGTCTTT | 62.198 | 60.000 | 16.73 | 0.00 | 40.63 | 2.52 |
313 | 315 | 2.672307 | ACTCTCGCCGACGGTCTT | 60.672 | 61.111 | 16.73 | 0.00 | 40.63 | 3.01 |
314 | 316 | 3.126225 | GACTCTCGCCGACGGTCT | 61.126 | 66.667 | 16.73 | 0.00 | 40.63 | 3.85 |
315 | 317 | 4.176851 | GGACTCTCGCCGACGGTC | 62.177 | 72.222 | 16.73 | 7.00 | 40.63 | 4.79 |
317 | 319 | 3.744719 | TTGGACTCTCGCCGACGG | 61.745 | 66.667 | 10.29 | 10.29 | 40.63 | 4.79 |
318 | 320 | 2.504244 | GTTGGACTCTCGCCGACG | 60.504 | 66.667 | 0.00 | 0.00 | 42.01 | 5.12 |
319 | 321 | 1.444553 | CAGTTGGACTCTCGCCGAC | 60.445 | 63.158 | 0.00 | 0.00 | 39.64 | 4.79 |
320 | 322 | 2.962569 | CAGTTGGACTCTCGCCGA | 59.037 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
321 | 323 | 2.811317 | GCAGTTGGACTCTCGCCG | 60.811 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
322 | 324 | 2.435059 | GGCAGTTGGACTCTCGCC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
323 | 325 | 1.078848 | ATGGCAGTTGGACTCTCGC | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
324 | 326 | 0.803768 | CGATGGCAGTTGGACTCTCG | 60.804 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
325 | 327 | 0.460987 | CCGATGGCAGTTGGACTCTC | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
375 | 377 | 3.885521 | GGCGACTAGGACGGACGG | 61.886 | 72.222 | 12.12 | 0.00 | 0.00 | 4.79 |
376 | 378 | 4.233635 | CGGCGACTAGGACGGACG | 62.234 | 72.222 | 0.00 | 0.47 | 0.00 | 4.79 |
377 | 379 | 4.549516 | GCGGCGACTAGGACGGAC | 62.550 | 72.222 | 12.98 | 0.00 | 0.00 | 4.79 |
384 | 386 | 4.554363 | CAGACGGGCGGCGACTAG | 62.554 | 72.222 | 14.66 | 10.27 | 0.00 | 2.57 |
461 | 463 | 0.537188 | AGCTCATTCGTGTCCGGATT | 59.463 | 50.000 | 7.81 | 0.00 | 26.60 | 3.01 |
466 | 468 | 2.860582 | GCTAGCTAGCTCATTCGTGTCC | 60.861 | 54.545 | 33.71 | 4.59 | 45.62 | 4.02 |
468 | 470 | 2.500509 | GCTAGCTAGCTCATTCGTGT | 57.499 | 50.000 | 33.71 | 0.00 | 45.62 | 4.49 |
514 | 517 | 1.594310 | GATGGATCCGGGAGCTAGC | 59.406 | 63.158 | 12.67 | 6.62 | 0.00 | 3.42 |
553 | 556 | 2.787473 | AGTCGCCAAATCAATCCAGA | 57.213 | 45.000 | 0.00 | 0.00 | 0.00 | 3.86 |
560 | 563 | 2.602878 | GTCTTCGTAGTCGCCAAATCA | 58.397 | 47.619 | 0.00 | 0.00 | 36.96 | 2.57 |
565 | 568 | 1.236616 | TTCCGTCTTCGTAGTCGCCA | 61.237 | 55.000 | 3.37 | 0.00 | 36.96 | 5.69 |
576 | 579 | 3.258372 | TGTTCATAGTCAGCTTCCGTCTT | 59.742 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
577 | 580 | 2.826128 | TGTTCATAGTCAGCTTCCGTCT | 59.174 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
583 | 586 | 3.678056 | TTCCGTGTTCATAGTCAGCTT | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 3.74 |
588 | 591 | 5.412526 | TGTTTGTTTCCGTGTTCATAGTC | 57.587 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
594 | 597 | 3.375922 | TCCTCTTGTTTGTTTCCGTGTTC | 59.624 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
601 | 604 | 7.008357 | CGTCTTTTTCTTCCTCTTGTTTGTTTC | 59.992 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
603 | 606 | 6.072119 | ACGTCTTTTTCTTCCTCTTGTTTGTT | 60.072 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
606 | 609 | 5.163652 | CCACGTCTTTTTCTTCCTCTTGTTT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
610 | 613 | 4.101119 | TCTCCACGTCTTTTTCTTCCTCTT | 59.899 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
658 | 661 | 8.294577 | CCGAGCAAACCTTTAAACTAAAACTAT | 58.705 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
659 | 662 | 7.641760 | CCGAGCAAACCTTTAAACTAAAACTA | 58.358 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
660 | 663 | 6.500910 | CCGAGCAAACCTTTAAACTAAAACT | 58.499 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
671 | 675 | 1.966451 | CGAGGCCGAGCAAACCTTT | 60.966 | 57.895 | 0.00 | 0.00 | 38.22 | 3.11 |
677 | 681 | 0.250381 | TTTTAACCGAGGCCGAGCAA | 60.250 | 50.000 | 0.00 | 0.00 | 38.22 | 3.91 |
680 | 684 | 2.463592 | GGTTTTAACCGAGGCCGAG | 58.536 | 57.895 | 0.00 | 0.00 | 39.66 | 4.63 |
691 | 695 | 9.516546 | AAAACACATTTTAAGGGTTGGTTTTAA | 57.483 | 25.926 | 0.00 | 0.00 | 36.22 | 1.52 |
693 | 697 | 7.665974 | TGAAAACACATTTTAAGGGTTGGTTTT | 59.334 | 29.630 | 0.00 | 0.00 | 38.17 | 2.43 |
701 | 705 | 6.292114 | GCGAAACTGAAAACACATTTTAAGGG | 60.292 | 38.462 | 2.68 | 0.00 | 39.73 | 3.95 |
707 | 711 | 4.743493 | ACTGCGAAACTGAAAACACATTT | 58.257 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
708 | 712 | 4.370364 | ACTGCGAAACTGAAAACACATT | 57.630 | 36.364 | 0.00 | 0.00 | 0.00 | 2.71 |
711 | 715 | 5.229260 | CCTTAAACTGCGAAACTGAAAACAC | 59.771 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
736 | 740 | 4.398044 | AGTCTTAGAGCAACTCTAGCAGAC | 59.602 | 45.833 | 19.61 | 19.61 | 43.79 | 3.51 |
738 | 742 | 4.671377 | CAGTCTTAGAGCAACTCTAGCAG | 58.329 | 47.826 | 4.64 | 1.69 | 42.92 | 4.24 |
767 | 774 | 0.739462 | CGCGTCATGGTGGCTCTAAA | 60.739 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
771 | 778 | 2.434185 | TTCGCGTCATGGTGGCTC | 60.434 | 61.111 | 5.77 | 0.00 | 0.00 | 4.70 |
881 | 897 | 3.151022 | GGCGAGAGGGACAGGGAG | 61.151 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
882 | 898 | 4.779733 | GGGCGAGAGGGACAGGGA | 62.780 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
948 | 964 | 3.509388 | GGAACGGAGAGAAAGCGAA | 57.491 | 52.632 | 0.00 | 0.00 | 0.00 | 4.70 |
977 | 993 | 3.175240 | CTTGCGGAGTCGTCAGCG | 61.175 | 66.667 | 0.00 | 0.00 | 46.01 | 5.18 |
1040 | 1103 | 4.845580 | AGAGGAGCAATGCCGCCG | 62.846 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
1042 | 1105 | 2.883267 | AAGGAGAGGAGCAATGCCGC | 62.883 | 60.000 | 0.00 | 0.00 | 0.00 | 6.53 |
1089 | 1152 | 4.241555 | CCTTGGATCCTCCCGGCG | 62.242 | 72.222 | 14.23 | 0.00 | 35.03 | 6.46 |
1147 | 1210 | 0.033781 | TCTACCAACGGAAACCACGG | 59.966 | 55.000 | 0.00 | 0.00 | 35.23 | 4.94 |
1158 | 1221 | 6.533367 | GCTATGCTATGCTATTCTCTACCAAC | 59.467 | 42.308 | 0.00 | 0.00 | 0.00 | 3.77 |
1169 | 1232 | 3.244009 | CCCGCTATGCTATGCTATGCTAT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 2.97 |
1170 | 1233 | 2.101415 | CCCGCTATGCTATGCTATGCTA | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
1171 | 1234 | 1.134580 | CCCGCTATGCTATGCTATGCT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
1172 | 1235 | 1.293924 | CCCGCTATGCTATGCTATGC | 58.706 | 55.000 | 0.00 | 0.00 | 0.00 | 3.14 |
1173 | 1236 | 1.293924 | GCCCGCTATGCTATGCTATG | 58.706 | 55.000 | 0.00 | 0.00 | 0.00 | 2.23 |
1174 | 1237 | 0.904649 | TGCCCGCTATGCTATGCTAT | 59.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
1227 | 1290 | 5.552870 | ACAACAGACCAGACTAGTGAAAT | 57.447 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
1246 | 1309 | 7.391554 | GCATCTGATATGAAATAGGCCTTACAA | 59.608 | 37.037 | 12.58 | 0.00 | 28.50 | 2.41 |
1299 | 1362 | 8.651389 | CCACCTATCTATAATCTCACCTCAAAA | 58.349 | 37.037 | 0.00 | 0.00 | 0.00 | 2.44 |
1300 | 1363 | 8.010697 | TCCACCTATCTATAATCTCACCTCAAA | 58.989 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
1301 | 1364 | 7.535738 | TCCACCTATCTATAATCTCACCTCAA | 58.464 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
1302 | 1365 | 7.103745 | TCCACCTATCTATAATCTCACCTCA | 57.896 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1303 | 1366 | 8.474025 | CATTCCACCTATCTATAATCTCACCTC | 58.526 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
1304 | 1367 | 7.401493 | CCATTCCACCTATCTATAATCTCACCT | 59.599 | 40.741 | 0.00 | 0.00 | 0.00 | 4.00 |
1305 | 1368 | 7.181125 | ACCATTCCACCTATCTATAATCTCACC | 59.819 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
1306 | 1369 | 8.140112 | ACCATTCCACCTATCTATAATCTCAC | 57.860 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
1307 | 1370 | 9.480861 | CTACCATTCCACCTATCTATAATCTCA | 57.519 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
1308 | 1371 | 9.482175 | ACTACCATTCCACCTATCTATAATCTC | 57.518 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
1309 | 1372 | 9.845214 | AACTACCATTCCACCTATCTATAATCT | 57.155 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
1312 | 1375 | 9.670442 | AGAAACTACCATTCCACCTATCTATAA | 57.330 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
1313 | 1376 | 9.090103 | CAGAAACTACCATTCCACCTATCTATA | 57.910 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
1314 | 1377 | 7.569111 | ACAGAAACTACCATTCCACCTATCTAT | 59.431 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
1315 | 1378 | 6.901300 | ACAGAAACTACCATTCCACCTATCTA | 59.099 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
1316 | 1379 | 5.726793 | ACAGAAACTACCATTCCACCTATCT | 59.273 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1317 | 1380 | 5.990668 | ACAGAAACTACCATTCCACCTATC | 58.009 | 41.667 | 0.00 | 0.00 | 0.00 | 2.08 |
1318 | 1381 | 6.180472 | CAACAGAAACTACCATTCCACCTAT | 58.820 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1319 | 1382 | 5.514136 | CCAACAGAAACTACCATTCCACCTA | 60.514 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1320 | 1383 | 4.398319 | CAACAGAAACTACCATTCCACCT | 58.602 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1349 | 1412 | 5.421056 | AGACGAATCACTTGGGTGTAGATTA | 59.579 | 40.000 | 0.00 | 0.00 | 43.41 | 1.75 |
1387 | 1451 | 8.957466 | AGGTGCTTAATAAAAGATGGTTAGAAC | 58.043 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1474 | 1544 | 6.780901 | AGACTAGATGGCATGAATCATGAAT | 58.219 | 36.000 | 25.77 | 17.35 | 43.81 | 2.57 |
1475 | 1545 | 6.183810 | AGACTAGATGGCATGAATCATGAA | 57.816 | 37.500 | 25.77 | 13.53 | 43.81 | 2.57 |
1476 | 1546 | 5.820404 | AGACTAGATGGCATGAATCATGA | 57.180 | 39.130 | 25.77 | 7.23 | 43.81 | 3.07 |
1477 | 1547 | 6.107343 | CCTAGACTAGATGGCATGAATCATG | 58.893 | 44.000 | 18.25 | 18.25 | 43.91 | 3.07 |
1478 | 1548 | 5.189342 | CCCTAGACTAGATGGCATGAATCAT | 59.811 | 44.000 | 3.81 | 0.00 | 0.00 | 2.45 |
1479 | 1549 | 4.529769 | CCCTAGACTAGATGGCATGAATCA | 59.470 | 45.833 | 3.81 | 0.00 | 0.00 | 2.57 |
1480 | 1550 | 4.530161 | ACCCTAGACTAGATGGCATGAATC | 59.470 | 45.833 | 3.81 | 0.00 | 0.00 | 2.52 |
1481 | 1551 | 4.497516 | ACCCTAGACTAGATGGCATGAAT | 58.502 | 43.478 | 3.81 | 0.00 | 0.00 | 2.57 |
1487 | 1557 | 3.231207 | TCTGACCCTAGACTAGATGGC | 57.769 | 52.381 | 11.27 | 4.64 | 0.00 | 4.40 |
1490 | 1560 | 4.105537 | TGCAGATCTGACCCTAGACTAGAT | 59.894 | 45.833 | 27.04 | 0.00 | 0.00 | 1.98 |
1525 | 1595 | 5.046304 | AGCATGGTGGTATGATACTATGACC | 60.046 | 44.000 | 0.00 | 4.98 | 37.81 | 4.02 |
1541 | 1615 | 3.430895 | GCACTTTGATTGAAAGCATGGTG | 59.569 | 43.478 | 0.00 | 8.68 | 44.48 | 4.17 |
1542 | 1616 | 3.322828 | AGCACTTTGATTGAAAGCATGGT | 59.677 | 39.130 | 0.00 | 0.00 | 44.48 | 3.55 |
1543 | 1617 | 3.921677 | AGCACTTTGATTGAAAGCATGG | 58.078 | 40.909 | 0.00 | 0.00 | 44.48 | 3.66 |
1574 | 1648 | 2.562298 | CCAAGTTTGAGGGCATTGCTTA | 59.438 | 45.455 | 8.82 | 0.00 | 0.00 | 3.09 |
1610 | 1684 | 7.322664 | ACATCTATTAGTTTTGCCCAAATGTG | 58.677 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
1628 | 1702 | 2.437281 | CTGTTGGCCAGAGGACATCTAT | 59.563 | 50.000 | 5.11 | 0.00 | 42.18 | 1.98 |
1631 | 1705 | 0.615331 | TCTGTTGGCCAGAGGACATC | 59.385 | 55.000 | 5.11 | 0.00 | 42.18 | 3.06 |
1639 | 1713 | 3.452627 | ACTTCCTATACTCTGTTGGCCAG | 59.547 | 47.826 | 5.11 | 0.00 | 42.97 | 4.85 |
1651 | 1725 | 6.015519 | AGAGTCATCATCAGCACTTCCTATAC | 60.016 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
1680 | 1754 | 2.057922 | CATATACACCTTGAGCCCCCT | 58.942 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
1729 | 1803 | 0.108585 | TTCCTTCTTCAGCGGCTTGT | 59.891 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1776 | 1850 | 5.447778 | AACTGTTCCATGAAGATCTCCAT | 57.552 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1795 | 1869 | 1.134521 | TCACACTCGGCAACAGAAACT | 60.135 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
1808 | 1882 | 5.237344 | CGGGATTAAAATCTGGATCACACTC | 59.763 | 44.000 | 0.00 | 0.00 | 35.73 | 3.51 |
1852 | 1926 | 3.811497 | GCTGCACATCTGAATAGCATGTA | 59.189 | 43.478 | 0.00 | 0.00 | 34.35 | 2.29 |
1856 | 1930 | 1.292992 | CGCTGCACATCTGAATAGCA | 58.707 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
1910 | 1984 | 4.171234 | TGATCCCCTCCCTTGATCTATTC | 58.829 | 47.826 | 0.00 | 0.00 | 36.65 | 1.75 |
1927 | 2001 | 5.437289 | TGTGTGTGACAAAGAAATGATCC | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
1947 | 2021 | 1.696063 | AGCAAGCACCAAAGTCATGT | 58.304 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1948 | 2022 | 2.608752 | GGAAGCAAGCACCAAAGTCATG | 60.609 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1949 | 2023 | 1.615392 | GGAAGCAAGCACCAAAGTCAT | 59.385 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
1986 | 2061 | 5.411669 | GTCCATAACAAGGATTTGAACTCGT | 59.588 | 40.000 | 0.00 | 0.00 | 37.52 | 4.18 |
2029 | 2106 | 7.040478 | ACACATGTACTCAGCATTACACAATTT | 60.040 | 33.333 | 0.00 | 0.00 | 31.09 | 1.82 |
2038 | 2115 | 4.314961 | TCGAAACACATGTACTCAGCATT | 58.685 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
2040 | 2117 | 3.317150 | CTCGAAACACATGTACTCAGCA | 58.683 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
2091 | 2169 | 0.324645 | GAAGGTCCATTGCCCCATGT | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2113 | 2191 | 4.816126 | ACTGGCCCATTCAGTAGAGTATA | 58.184 | 43.478 | 0.00 | 0.00 | 42.91 | 1.47 |
2129 | 2207 | 5.582665 | CAGAAGTAATTAAGTCAGACTGGCC | 59.417 | 44.000 | 3.05 | 0.00 | 0.00 | 5.36 |
2142 | 2220 | 6.726258 | CACATGTGCAGACAGAAGTAATTA | 57.274 | 37.500 | 13.94 | 0.00 | 34.87 | 1.40 |
2233 | 2311 | 5.330455 | TCAACTAGACAGCTGGTTATGAG | 57.670 | 43.478 | 19.93 | 8.53 | 43.02 | 2.90 |
2263 | 2341 | 6.207417 | GGAAATATGGTATGGAATGACAGGTG | 59.793 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
2330 | 2410 | 9.665264 | GTTAAAGAAAGATAGAACTGGTGTTTG | 57.335 | 33.333 | 0.00 | 0.00 | 36.39 | 2.93 |
2372 | 2452 | 7.365497 | ACAATTGGTTTCTCTTCCTGAAATT | 57.635 | 32.000 | 10.83 | 0.00 | 36.10 | 1.82 |
2431 | 2511 | 4.837218 | AGGGAATACATGGGAGAAGAGAT | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 2.75 |
2445 | 2525 | 2.789409 | ACCAGAGCACAAGGGAATAC | 57.211 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2467 | 2547 | 3.306019 | CCCCTTGCAACATAGGTTCAAAC | 60.306 | 47.826 | 0.00 | 0.00 | 34.21 | 2.93 |
2503 | 2583 | 6.640499 | TGAATTTTCATTCACTTTTGCCTACG | 59.360 | 34.615 | 0.00 | 0.00 | 43.32 | 3.51 |
2547 | 2627 | 2.373540 | TCGTTTAATGGTCACCGGAG | 57.626 | 50.000 | 9.46 | 0.00 | 0.00 | 4.63 |
2548 | 2628 | 2.613474 | CCTTCGTTTAATGGTCACCGGA | 60.613 | 50.000 | 9.46 | 0.00 | 0.00 | 5.14 |
2549 | 2629 | 1.735571 | CCTTCGTTTAATGGTCACCGG | 59.264 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
2550 | 2630 | 2.419667 | ACCTTCGTTTAATGGTCACCG | 58.580 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
2551 | 2631 | 4.841443 | AAACCTTCGTTTAATGGTCACC | 57.159 | 40.909 | 0.00 | 0.00 | 40.47 | 4.02 |
2641 | 2922 | 1.064017 | TGCACTGGGTCTGTCCTTTTT | 60.064 | 47.619 | 0.00 | 0.00 | 36.25 | 1.94 |
2643 | 2924 | 0.773644 | ATGCACTGGGTCTGTCCTTT | 59.226 | 50.000 | 0.00 | 0.00 | 36.25 | 3.11 |
2644 | 2925 | 1.556911 | CTATGCACTGGGTCTGTCCTT | 59.443 | 52.381 | 0.00 | 0.00 | 36.25 | 3.36 |
2646 | 2927 | 1.195115 | TCTATGCACTGGGTCTGTCC | 58.805 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2647 | 2928 | 2.898705 | CTTCTATGCACTGGGTCTGTC | 58.101 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2648 | 2929 | 1.065854 | GCTTCTATGCACTGGGTCTGT | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2649 | 2930 | 1.209019 | AGCTTCTATGCACTGGGTCTG | 59.791 | 52.381 | 0.00 | 0.00 | 34.99 | 3.51 |
2650 | 2931 | 1.484240 | GAGCTTCTATGCACTGGGTCT | 59.516 | 52.381 | 0.00 | 0.00 | 34.99 | 3.85 |
2651 | 2932 | 1.474143 | GGAGCTTCTATGCACTGGGTC | 60.474 | 57.143 | 0.00 | 0.00 | 34.99 | 4.46 |
2652 | 2933 | 0.543749 | GGAGCTTCTATGCACTGGGT | 59.456 | 55.000 | 0.00 | 0.00 | 34.99 | 4.51 |
2653 | 2934 | 0.179034 | GGGAGCTTCTATGCACTGGG | 60.179 | 60.000 | 0.00 | 0.00 | 34.99 | 4.45 |
2654 | 2935 | 0.543277 | TGGGAGCTTCTATGCACTGG | 59.457 | 55.000 | 0.00 | 0.00 | 34.99 | 4.00 |
2655 | 2936 | 1.065926 | TGTGGGAGCTTCTATGCACTG | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 3.66 |
2656 | 2937 | 1.065854 | GTGTGGGAGCTTCTATGCACT | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 4.40 |
2657 | 2938 | 1.339055 | TGTGTGGGAGCTTCTATGCAC | 60.339 | 52.381 | 0.00 | 0.00 | 34.99 | 4.57 |
2658 | 2939 | 0.983467 | TGTGTGGGAGCTTCTATGCA | 59.017 | 50.000 | 0.00 | 0.00 | 34.99 | 3.96 |
2659 | 2940 | 2.012673 | CTTGTGTGGGAGCTTCTATGC | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
2660 | 2941 | 2.026822 | ACCTTGTGTGGGAGCTTCTATG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2661 | 2942 | 2.026822 | CACCTTGTGTGGGAGCTTCTAT | 60.027 | 50.000 | 0.00 | 0.00 | 41.52 | 1.98 |
2662 | 2943 | 1.347707 | CACCTTGTGTGGGAGCTTCTA | 59.652 | 52.381 | 0.00 | 0.00 | 41.52 | 2.10 |
2663 | 2944 | 0.109342 | CACCTTGTGTGGGAGCTTCT | 59.891 | 55.000 | 0.00 | 0.00 | 41.52 | 2.85 |
2664 | 2945 | 2.633860 | CACCTTGTGTGGGAGCTTC | 58.366 | 57.895 | 0.00 | 0.00 | 41.52 | 3.86 |
2665 | 2946 | 4.907457 | CACCTTGTGTGGGAGCTT | 57.093 | 55.556 | 0.00 | 0.00 | 41.52 | 3.74 |
2672 | 2953 | 1.228245 | CCAGACCCCACCTTGTGTG | 60.228 | 63.158 | 0.00 | 0.00 | 45.01 | 3.82 |
2673 | 2954 | 2.460853 | CCCAGACCCCACCTTGTGT | 61.461 | 63.158 | 0.00 | 0.00 | 0.00 | 3.72 |
2674 | 2955 | 1.131303 | TACCCAGACCCCACCTTGTG | 61.131 | 60.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2675 | 2956 | 0.840722 | CTACCCAGACCCCACCTTGT | 60.841 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2676 | 2957 | 0.546747 | TCTACCCAGACCCCACCTTG | 60.547 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2677 | 2958 | 0.252742 | CTCTACCCAGACCCCACCTT | 60.253 | 60.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2678 | 2959 | 1.392534 | CTCTACCCAGACCCCACCT | 59.607 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
2679 | 2960 | 2.368011 | GCTCTACCCAGACCCCACC | 61.368 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
2680 | 2961 | 1.198759 | TTGCTCTACCCAGACCCCAC | 61.199 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2681 | 2962 | 0.909610 | CTTGCTCTACCCAGACCCCA | 60.910 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2682 | 2963 | 0.617820 | TCTTGCTCTACCCAGACCCC | 60.618 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2683 | 2964 | 1.276622 | TTCTTGCTCTACCCAGACCC | 58.723 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2684 | 2965 | 3.636153 | ATTTCTTGCTCTACCCAGACC | 57.364 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2685 | 2966 | 6.037610 | CACAATATTTCTTGCTCTACCCAGAC | 59.962 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
2686 | 2967 | 6.070251 | TCACAATATTTCTTGCTCTACCCAGA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
2687 | 2968 | 6.115446 | TCACAATATTTCTTGCTCTACCCAG | 58.885 | 40.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2688 | 2969 | 6.061022 | TCACAATATTTCTTGCTCTACCCA | 57.939 | 37.500 | 0.00 | 0.00 | 0.00 | 4.51 |
2689 | 2970 | 5.529060 | CCTCACAATATTTCTTGCTCTACCC | 59.471 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2690 | 2971 | 6.349300 | TCCTCACAATATTTCTTGCTCTACC | 58.651 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2691 | 2972 | 7.849804 | TTCCTCACAATATTTCTTGCTCTAC | 57.150 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2693 | 2974 | 7.951347 | ATTTCCTCACAATATTTCTTGCTCT | 57.049 | 32.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2706 | 2987 | 9.528018 | GTTGAAGAAACATTTATTTCCTCACAA | 57.472 | 29.630 | 0.22 | 0.00 | 38.27 | 3.33 |
2707 | 2988 | 8.690884 | TGTTGAAGAAACATTTATTTCCTCACA | 58.309 | 29.630 | 0.22 | 0.96 | 43.96 | 3.58 |
2749 | 3030 | 4.759693 | TGTTCTACCGTGCAATGAGAAAAT | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2785 | 3067 | 3.316868 | CCACTAGAGCTAGTCTGTAAGGC | 59.683 | 52.174 | 7.19 | 0.00 | 43.98 | 4.35 |
2798 | 3080 | 3.895232 | TCCATTGAAGACCACTAGAGC | 57.105 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
2806 | 3088 | 5.478332 | AGGAGAACAATTTCCATTGAAGACC | 59.522 | 40.000 | 1.97 | 0.00 | 42.35 | 3.85 |
2823 | 3105 | 1.734465 | CGACCAAATGCAGAGGAGAAC | 59.266 | 52.381 | 8.66 | 0.00 | 0.00 | 3.01 |
2838 | 3120 | 2.176314 | ATCAGCAGAAGCAGCGACCA | 62.176 | 55.000 | 0.00 | 0.00 | 45.49 | 4.02 |
2839 | 3121 | 1.023513 | AATCAGCAGAAGCAGCGACC | 61.024 | 55.000 | 0.00 | 0.00 | 45.49 | 4.79 |
2873 | 3155 | 0.601057 | GCAACTTGTACCGGGCAATT | 59.399 | 50.000 | 6.32 | 2.01 | 0.00 | 2.32 |
2875 | 3157 | 2.255172 | CGCAACTTGTACCGGGCAA | 61.255 | 57.895 | 6.32 | 10.05 | 0.00 | 4.52 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.