Multiple sequence alignment - TraesCS3B01G473800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G473800 chr3B 100.000 5074 0 0 1 5074 723035943 723030870 0.000000e+00 9371
1 TraesCS3B01G473800 chr3B 96.310 271 10 0 1972 2242 401220215 401219945 3.600000e-121 446
2 TraesCS3B01G473800 chr3D 91.835 2523 124 37 2300 4809 546250448 546247995 0.000000e+00 3443
3 TraesCS3B01G473800 chr3D 87.826 1380 77 35 646 1978 546251837 546250502 0.000000e+00 1533
4 TraesCS3B01G473800 chr3D 84.875 562 46 18 1 544 546252388 546251848 9.670000e-147 531
5 TraesCS3B01G473800 chr3D 93.358 271 17 1 4804 5074 546247960 546247691 2.850000e-107 399
6 TraesCS3B01G473800 chr3A 93.376 2174 118 23 2236 4390 682978213 682976047 0.000000e+00 3193
7 TraesCS3B01G473800 chr3A 83.358 1328 116 54 692 1974 682979485 682978218 0.000000e+00 1131
8 TraesCS3B01G473800 chr3A 85.099 557 58 18 1 552 682980106 682979570 3.450000e-151 545
9 TraesCS3B01G473800 chr3A 97.727 264 5 1 1976 2238 741483458 741483195 2.150000e-123 453
10 TraesCS3B01G473800 chr3A 97.727 264 5 1 1976 2238 741557378 741557115 2.150000e-123 453
11 TraesCS3B01G473800 chr3A 97.378 267 4 3 1976 2242 517388337 517388074 7.750000e-123 451
12 TraesCS3B01G473800 chr7A 97.753 267 6 0 1976 2242 506291322 506291588 1.290000e-125 460
13 TraesCS3B01G473800 chr7A 97.358 265 7 0 1974 2238 101271798 101272062 7.750000e-123 451
14 TraesCS3B01G473800 chr4A 96.416 279 9 1 1966 2244 250425032 250425309 4.630000e-125 459
15 TraesCS3B01G473800 chr1B 95.941 271 11 0 1978 2248 2206675 2206405 1.680000e-119 440
16 TraesCS3B01G473800 chr1B 95.341 279 9 4 1970 2248 419190635 419190909 1.680000e-119 440
17 TraesCS3B01G473800 chr5A 96.552 145 5 0 3136 3280 228311467 228311611 1.830000e-59 241
18 TraesCS3B01G473800 chr5A 94.667 75 2 1 4557 4629 647044650 647044724 1.150000e-21 115
19 TraesCS3B01G473800 chr4D 91.111 90 5 2 4542 4629 241215210 241215298 8.920000e-23 119
20 TraesCS3B01G473800 chrUn 93.333 75 3 1 4557 4629 86448671 86448597 5.370000e-20 110
21 TraesCS3B01G473800 chrUn 93.333 75 3 1 4557 4629 86454671 86454597 5.370000e-20 110
22 TraesCS3B01G473800 chrUn 93.333 75 3 1 4557 4629 222680606 222680680 5.370000e-20 110
23 TraesCS3B01G473800 chrUn 93.333 75 3 1 4557 4629 358547320 358547246 5.370000e-20 110
24 TraesCS3B01G473800 chrUn 93.333 75 3 1 4557 4629 417500146 417500220 5.370000e-20 110
25 TraesCS3B01G473800 chrUn 93.333 75 3 1 4557 4629 427277322 427277248 5.370000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G473800 chr3B 723030870 723035943 5073 True 9371.0 9371 100.000000 1 5074 1 chr3B.!!$R2 5073
1 TraesCS3B01G473800 chr3D 546247691 546252388 4697 True 1476.5 3443 89.473500 1 5074 4 chr3D.!!$R1 5073
2 TraesCS3B01G473800 chr3A 682976047 682980106 4059 True 1623.0 3193 87.277667 1 4390 3 chr3A.!!$R4 4389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 79 0.041312 CCGAAAACACAACAGAGGCG 60.041 55.000 0.00 0.0 0.0 5.52 F
421 449 0.536233 CCAACCACAACCCATCGTCA 60.536 55.000 0.00 0.0 0.0 4.35 F
450 478 0.606401 TCAAGGAGAAAAGCGGCCAG 60.606 55.000 2.24 0.0 0.0 4.85 F
1869 1982 0.185901 AGTTGCCACCACCTCATGTT 59.814 50.000 0.00 0.0 0.0 2.71 F
2615 2739 1.064654 GCCATCTCTTCATCAAACGCC 59.935 52.381 0.00 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1230 1308 0.382515 CGCGAGGAGAAGAGGTTAGG 59.617 60.000 0.0 0.00 0.00 2.69 R
1763 1872 0.610687 AGGAGGCTATGCTTATCGCC 59.389 55.000 0.0 2.58 42.79 5.54 R
2337 2460 1.080705 CGTGGTCCTCTTCGTCACC 60.081 63.158 0.0 0.00 0.00 4.02 R
2738 2862 0.180171 CGTAACCATCAGCCCCATCA 59.820 55.000 0.0 0.00 0.00 3.07 R
4474 4644 0.108138 CATTCACCACTCCCGTCCTC 60.108 60.000 0.0 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.942804 TGGCCCACATAACATGGTATG 58.057 47.619 25.93 25.93 37.47 2.39
27 29 4.263905 CCCACATAACATGGTATGGCCTAT 60.264 45.833 29.61 9.91 36.04 2.57
33 35 2.909006 ACATGGTATGGCCTATGGAGAG 59.091 50.000 3.32 0.00 38.35 3.20
34 36 2.030027 TGGTATGGCCTATGGAGAGG 57.970 55.000 3.32 0.00 39.88 3.69
48 50 0.391661 GAGAGGTCCATGCGCAAGAA 60.392 55.000 17.11 0.00 43.02 2.52
77 79 0.041312 CCGAAAACACAACAGAGGCG 60.041 55.000 0.00 0.00 0.00 5.52
101 103 3.334751 TCGTGTGCGGCTGAAACG 61.335 61.111 0.00 2.43 38.89 3.60
107 109 2.258013 TGCGGCTGAAACGGAAAGG 61.258 57.895 0.00 0.00 0.00 3.11
110 112 0.948678 CGGCTGAAACGGAAAGGAAA 59.051 50.000 0.00 0.00 0.00 3.13
198 200 5.706447 ACCTATCATACTCTAGCCAACTCA 58.294 41.667 0.00 0.00 0.00 3.41
200 202 6.041069 ACCTATCATACTCTAGCCAACTCAAC 59.959 42.308 0.00 0.00 0.00 3.18
203 205 5.516044 TCATACTCTAGCCAACTCAACCTA 58.484 41.667 0.00 0.00 0.00 3.08
215 221 1.712350 CTCAACCTAACGTCGTTGTCG 59.288 52.381 20.62 9.67 40.22 4.35
259 266 1.909700 ACATCTCCCGCATGTTTTGT 58.090 45.000 0.00 0.00 29.75 2.83
279 286 5.948742 TGTGGGACATGACACTATTCATA 57.051 39.130 16.48 0.00 44.52 2.15
283 290 5.130975 TGGGACATGACACTATTCATAAGCT 59.869 40.000 0.00 0.00 34.29 3.74
287 294 7.912250 GGACATGACACTATTCATAAGCTTTTG 59.088 37.037 3.20 7.54 34.29 2.44
334 353 5.637810 GCCATCTTTGGTTTTACCTTAAAGC 59.362 40.000 0.00 0.00 45.57 3.51
351 370 9.178758 ACCTTAAAGCTCAAAAATAGACTATGG 57.821 33.333 0.00 0.00 0.00 2.74
352 371 8.131731 CCTTAAAGCTCAAAAATAGACTATGGC 58.868 37.037 0.00 0.00 0.00 4.40
377 405 1.613437 ACCCAAAGCCATTTCTTCGTG 59.387 47.619 0.00 0.00 0.00 4.35
378 406 1.067635 CCCAAAGCCATTTCTTCGTGG 60.068 52.381 0.00 0.00 38.55 4.94
383 411 1.883021 CCATTTCTTCGTGGCACCC 59.117 57.895 12.86 0.00 0.00 4.61
384 412 0.893270 CCATTTCTTCGTGGCACCCA 60.893 55.000 12.86 0.00 0.00 4.51
385 413 1.176527 CATTTCTTCGTGGCACCCAT 58.823 50.000 12.86 0.00 35.28 4.00
386 414 1.545582 CATTTCTTCGTGGCACCCATT 59.454 47.619 12.86 0.00 35.28 3.16
393 421 1.451337 CGTGGCACCCATTGTTGTCA 61.451 55.000 12.86 0.00 35.28 3.58
413 441 2.600470 GGGGAGCCAACCACAACC 60.600 66.667 0.00 0.00 32.85 3.77
421 449 0.536233 CCAACCACAACCCATCGTCA 60.536 55.000 0.00 0.00 0.00 4.35
428 456 1.000955 ACAACCCATCGTCACTCTCAC 59.999 52.381 0.00 0.00 0.00 3.51
429 457 1.273606 CAACCCATCGTCACTCTCACT 59.726 52.381 0.00 0.00 0.00 3.41
430 458 1.178276 ACCCATCGTCACTCTCACTC 58.822 55.000 0.00 0.00 0.00 3.51
431 459 1.272203 ACCCATCGTCACTCTCACTCT 60.272 52.381 0.00 0.00 0.00 3.24
432 460 1.403679 CCCATCGTCACTCTCACTCTC 59.596 57.143 0.00 0.00 0.00 3.20
433 461 2.087646 CCATCGTCACTCTCACTCTCA 58.912 52.381 0.00 0.00 0.00 3.27
434 462 2.489722 CCATCGTCACTCTCACTCTCAA 59.510 50.000 0.00 0.00 0.00 3.02
435 463 3.427368 CCATCGTCACTCTCACTCTCAAG 60.427 52.174 0.00 0.00 0.00 3.02
436 464 2.155279 TCGTCACTCTCACTCTCAAGG 58.845 52.381 0.00 0.00 0.00 3.61
437 465 2.155279 CGTCACTCTCACTCTCAAGGA 58.845 52.381 0.00 0.00 0.00 3.36
438 466 2.161410 CGTCACTCTCACTCTCAAGGAG 59.839 54.545 0.00 0.00 46.87 3.69
439 467 3.417101 GTCACTCTCACTCTCAAGGAGA 58.583 50.000 0.00 0.00 44.45 3.71
450 478 0.606401 TCAAGGAGAAAAGCGGCCAG 60.606 55.000 2.24 0.00 0.00 4.85
464 492 3.036429 GCCAGTTCGATCCCCTGCT 62.036 63.158 0.00 0.00 0.00 4.24
477 508 1.021390 CCCTGCTTCCAACTACAGCG 61.021 60.000 0.00 0.00 36.24 5.18
497 528 4.710528 CGTATCGCCATTTTCTAGAACC 57.289 45.455 4.18 0.00 0.00 3.62
511 542 1.398692 AGAACCAAGGCGCAAGAAAA 58.601 45.000 10.83 0.00 43.02 2.29
516 547 0.940991 CAAGGCGCAAGAAAAGTGGC 60.941 55.000 10.83 0.00 41.75 5.01
520 551 1.875963 CGCAAGAAAAGTGGCCGAT 59.124 52.632 0.00 0.00 43.02 4.18
536 567 2.061773 CCGATTCGATTCGATTCCCTG 58.938 52.381 26.39 8.05 41.62 4.45
546 577 4.551702 TTCGATTCCCTGTCTCATGAAA 57.448 40.909 0.00 0.00 0.00 2.69
574 605 3.648339 CACTGTTTGCATTGGCTACTT 57.352 42.857 0.00 0.00 41.91 2.24
575 606 3.311106 CACTGTTTGCATTGGCTACTTG 58.689 45.455 0.00 0.00 41.91 3.16
577 608 3.828451 ACTGTTTGCATTGGCTACTTGAT 59.172 39.130 0.00 0.00 41.91 2.57
578 609 4.082571 ACTGTTTGCATTGGCTACTTGATC 60.083 41.667 0.00 0.00 41.91 2.92
580 611 4.523943 TGTTTGCATTGGCTACTTGATCTT 59.476 37.500 0.00 0.00 41.91 2.40
581 612 4.707030 TTGCATTGGCTACTTGATCTTG 57.293 40.909 0.00 0.00 41.91 3.02
582 613 2.424601 TGCATTGGCTACTTGATCTTGC 59.575 45.455 0.00 0.00 41.91 4.01
583 614 2.686915 GCATTGGCTACTTGATCTTGCT 59.313 45.455 0.00 0.00 36.96 3.91
585 616 1.742761 TGGCTACTTGATCTTGCTGC 58.257 50.000 0.00 0.00 0.00 5.25
587 618 1.939255 GGCTACTTGATCTTGCTGCTC 59.061 52.381 0.00 0.00 0.00 4.26
588 619 2.419851 GGCTACTTGATCTTGCTGCTCT 60.420 50.000 0.00 0.00 0.00 4.09
590 621 3.688673 GCTACTTGATCTTGCTGCTCTTT 59.311 43.478 0.00 0.00 0.00 2.52
591 622 4.437121 GCTACTTGATCTTGCTGCTCTTTG 60.437 45.833 0.00 0.00 0.00 2.77
592 623 2.228343 ACTTGATCTTGCTGCTCTTTGC 59.772 45.455 0.00 0.00 43.25 3.68
593 624 2.195741 TGATCTTGCTGCTCTTTGCT 57.804 45.000 0.00 0.00 43.37 3.91
594 625 3.339253 TGATCTTGCTGCTCTTTGCTA 57.661 42.857 0.00 0.00 43.37 3.49
595 626 3.005554 TGATCTTGCTGCTCTTTGCTAC 58.994 45.455 0.00 0.00 43.37 3.58
596 627 2.847327 TCTTGCTGCTCTTTGCTACT 57.153 45.000 0.00 0.00 43.37 2.57
597 628 2.420642 TCTTGCTGCTCTTTGCTACTG 58.579 47.619 0.00 0.00 43.37 2.74
598 629 1.467734 CTTGCTGCTCTTTGCTACTGG 59.532 52.381 0.00 0.00 43.37 4.00
599 630 0.686789 TGCTGCTCTTTGCTACTGGA 59.313 50.000 0.00 0.00 43.37 3.86
600 631 1.280133 TGCTGCTCTTTGCTACTGGAT 59.720 47.619 0.00 0.00 43.37 3.41
601 632 2.290514 TGCTGCTCTTTGCTACTGGATT 60.291 45.455 0.00 0.00 43.37 3.01
602 633 2.097142 GCTGCTCTTTGCTACTGGATTG 59.903 50.000 0.00 0.00 43.37 2.67
603 634 3.603532 CTGCTCTTTGCTACTGGATTGA 58.396 45.455 0.00 0.00 43.37 2.57
604 635 4.005650 CTGCTCTTTGCTACTGGATTGAA 58.994 43.478 0.00 0.00 43.37 2.69
605 636 3.753272 TGCTCTTTGCTACTGGATTGAAC 59.247 43.478 0.00 0.00 43.37 3.18
606 637 3.127721 GCTCTTTGCTACTGGATTGAACC 59.872 47.826 0.00 0.00 38.95 3.62
621 652 3.455990 TGAACCAGTACACGTTGCTTA 57.544 42.857 2.63 0.00 0.00 3.09
636 667 1.946745 GCTTACTAGCTTGGCCTCTG 58.053 55.000 3.32 0.00 44.27 3.35
637 668 1.474143 GCTTACTAGCTTGGCCTCTGG 60.474 57.143 3.32 3.10 44.27 3.86
658 689 2.679349 GCCTCCTCAATCCTCACAAGTC 60.679 54.545 0.00 0.00 0.00 3.01
673 704 4.748102 TCACAAGTCGTGGTTCAATTACTC 59.252 41.667 0.00 0.00 46.36 2.59
674 705 4.509970 CACAAGTCGTGGTTCAATTACTCA 59.490 41.667 0.00 0.00 42.34 3.41
675 706 5.007234 CACAAGTCGTGGTTCAATTACTCAA 59.993 40.000 0.00 0.00 42.34 3.02
676 707 5.763204 ACAAGTCGTGGTTCAATTACTCAAT 59.237 36.000 0.00 0.00 0.00 2.57
677 708 6.073222 ACAAGTCGTGGTTCAATTACTCAATC 60.073 38.462 0.00 0.00 0.00 2.67
681 712 4.935205 CGTGGTTCAATTACTCAATCCTCA 59.065 41.667 0.00 0.00 0.00 3.86
682 713 5.411361 CGTGGTTCAATTACTCAATCCTCAA 59.589 40.000 0.00 0.00 0.00 3.02
690 721 7.394077 TCAATTACTCAATCCTCAATGCTCAAA 59.606 33.333 0.00 0.00 0.00 2.69
706 742 2.958355 CTCAAACCAAGGAGAGGCAAAA 59.042 45.455 0.00 0.00 32.87 2.44
735 771 1.001764 CCACTGCAAGGCATCTCCA 60.002 57.895 0.00 0.00 38.13 3.86
817 868 2.689691 GCCCCTTCACCAGCCCATA 61.690 63.158 0.00 0.00 0.00 2.74
848 899 2.215942 ATACCAGAAACCACAAGGGC 57.784 50.000 0.00 0.00 42.05 5.19
853 904 1.886542 CAGAAACCACAAGGGCCTAAC 59.113 52.381 6.41 0.00 42.05 2.34
914 966 2.391724 GACAAGGACCAACGGCAGGA 62.392 60.000 0.00 0.00 0.00 3.86
916 968 1.073199 AAGGACCAACGGCAGGAAG 59.927 57.895 0.00 0.00 0.00 3.46
923 983 1.604604 CAACGGCAGGAAGAAAGGAA 58.395 50.000 0.00 0.00 0.00 3.36
927 987 1.807142 CGGCAGGAAGAAAGGAAAGAC 59.193 52.381 0.00 0.00 0.00 3.01
1031 1105 4.410400 CCTCACCAACCCCCGAGC 62.410 72.222 0.00 0.00 0.00 5.03
1207 1285 0.741221 GAGCCCCGTCATGTGAGAAC 60.741 60.000 0.00 0.00 0.00 3.01
1208 1286 1.003839 GCCCCGTCATGTGAGAACA 60.004 57.895 0.00 0.00 0.00 3.18
1209 1287 1.298859 GCCCCGTCATGTGAGAACAC 61.299 60.000 0.00 0.00 46.09 3.32
1219 1297 2.426023 GAGAACACACGCACCCCT 59.574 61.111 0.00 0.00 0.00 4.79
1220 1298 1.668151 GAGAACACACGCACCCCTC 60.668 63.158 0.00 0.00 0.00 4.30
1221 1299 2.100879 GAGAACACACGCACCCCTCT 62.101 60.000 0.00 0.00 0.00 3.69
1222 1300 1.668151 GAACACACGCACCCCTCTC 60.668 63.158 0.00 0.00 0.00 3.20
1223 1301 3.178540 AACACACGCACCCCTCTCC 62.179 63.158 0.00 0.00 0.00 3.71
1224 1302 4.742201 CACACGCACCCCTCTCCG 62.742 72.222 0.00 0.00 0.00 4.63
1233 1311 3.834056 CCCTCTCCGCCCCTCCTA 61.834 72.222 0.00 0.00 0.00 2.94
1234 1312 2.282446 CCTCTCCGCCCCTCCTAA 59.718 66.667 0.00 0.00 0.00 2.69
1237 1315 2.041819 CTCCGCCCCTCCTAACCT 60.042 66.667 0.00 0.00 0.00 3.50
1240 1318 1.689582 CCGCCCCTCCTAACCTCTT 60.690 63.158 0.00 0.00 0.00 2.85
1246 1324 2.673258 CCCTCCTAACCTCTTCTCCTC 58.327 57.143 0.00 0.00 0.00 3.71
1247 1325 2.303175 CCTCCTAACCTCTTCTCCTCG 58.697 57.143 0.00 0.00 0.00 4.63
1252 1342 1.924320 AACCTCTTCTCCTCGCGTCG 61.924 60.000 5.77 0.00 0.00 5.12
1275 1365 4.035208 GCCGGTTGATTAGATTCGTGATTT 59.965 41.667 1.90 0.00 0.00 2.17
1279 1369 5.006746 GGTTGATTAGATTCGTGATTTCGCT 59.993 40.000 0.00 0.00 0.00 4.93
1480 1575 4.702081 GCCGCCGCGTAGATCGAT 62.702 66.667 12.58 0.00 42.86 3.59
1483 1578 3.166630 GCCGCGTAGATCGATCGC 61.167 66.667 19.33 18.19 45.28 4.58
1486 1581 3.515945 GCGTAGATCGATCGCGCG 61.516 66.667 35.23 29.85 42.34 6.86
1487 1582 2.127721 CGTAGATCGATCGCGCGT 60.128 61.111 30.98 17.41 42.86 6.01
1488 1583 2.410581 CGTAGATCGATCGCGCGTG 61.411 63.158 30.98 20.31 42.86 5.34
1489 1584 2.075489 GTAGATCGATCGCGCGTGG 61.075 63.158 30.98 19.37 37.46 4.94
1490 1585 3.874141 TAGATCGATCGCGCGTGGC 62.874 63.158 30.98 18.36 37.46 5.01
1763 1872 4.643334 TGGATTCTTCCTGCTTGATTGATG 59.357 41.667 0.00 0.00 43.07 3.07
1765 1874 2.372264 TCTTCCTGCTTGATTGATGGC 58.628 47.619 0.00 0.00 0.00 4.40
1798 1911 4.079253 GCCTCCTGTTTTTCCATCTGTTA 58.921 43.478 0.00 0.00 0.00 2.41
1803 1916 4.321230 CCTGTTTTTCCATCTGTTACTGGC 60.321 45.833 0.00 0.00 32.30 4.85
1804 1917 3.572255 TGTTTTTCCATCTGTTACTGGCC 59.428 43.478 0.00 0.00 32.30 5.36
1862 1975 0.466555 TACACCAAGTTGCCACCACC 60.467 55.000 0.00 0.00 0.00 4.61
1865 1978 1.152777 CCAAGTTGCCACCACCTCA 60.153 57.895 0.00 0.00 0.00 3.86
1869 1982 0.185901 AGTTGCCACCACCTCATGTT 59.814 50.000 0.00 0.00 0.00 2.71
1889 2002 9.942850 TCATGTTCATGTATAGAAGAAAGTTCA 57.057 29.630 11.73 0.00 0.00 3.18
1918 2038 4.888038 TTTACAGTGCTCATGATCATGC 57.112 40.909 27.68 18.85 38.65 4.06
1941 2061 5.406477 GCATAGAAAGTTCCTTTTGCCAAAG 59.594 40.000 3.29 3.29 39.45 2.77
1945 2068 6.472016 AGAAAGTTCCTTTTGCCAAAGAAAA 58.528 32.000 11.68 3.44 41.97 2.29
1981 2104 8.379457 AGTTCTTTCTGTTTGTATTGTACTCC 57.621 34.615 0.00 0.00 0.00 3.85
1982 2105 7.444487 AGTTCTTTCTGTTTGTATTGTACTCCC 59.556 37.037 0.00 0.00 0.00 4.30
1983 2106 7.074653 TCTTTCTGTTTGTATTGTACTCCCT 57.925 36.000 0.00 0.00 0.00 4.20
1984 2107 7.159372 TCTTTCTGTTTGTATTGTACTCCCTC 58.841 38.462 0.00 0.00 0.00 4.30
1985 2108 5.416271 TCTGTTTGTATTGTACTCCCTCC 57.584 43.478 0.00 0.00 0.00 4.30
1986 2109 4.081862 TCTGTTTGTATTGTACTCCCTCCG 60.082 45.833 0.00 0.00 0.00 4.63
1987 2110 3.579586 TGTTTGTATTGTACTCCCTCCGT 59.420 43.478 0.00 0.00 0.00 4.69
1988 2111 4.040706 TGTTTGTATTGTACTCCCTCCGTT 59.959 41.667 0.00 0.00 0.00 4.44
1989 2112 4.895668 TTGTATTGTACTCCCTCCGTTT 57.104 40.909 0.00 0.00 0.00 3.60
1990 2113 4.895668 TGTATTGTACTCCCTCCGTTTT 57.104 40.909 0.00 0.00 0.00 2.43
1991 2114 5.231702 TGTATTGTACTCCCTCCGTTTTT 57.768 39.130 0.00 0.00 0.00 1.94
1992 2115 6.357579 TGTATTGTACTCCCTCCGTTTTTA 57.642 37.500 0.00 0.00 0.00 1.52
1993 2116 6.949715 TGTATTGTACTCCCTCCGTTTTTAT 58.050 36.000 0.00 0.00 0.00 1.40
1994 2117 7.396418 TGTATTGTACTCCCTCCGTTTTTATT 58.604 34.615 0.00 0.00 0.00 1.40
1995 2118 7.884354 TGTATTGTACTCCCTCCGTTTTTATTT 59.116 33.333 0.00 0.00 0.00 1.40
1996 2119 9.382275 GTATTGTACTCCCTCCGTTTTTATTTA 57.618 33.333 0.00 0.00 0.00 1.40
1997 2120 7.671495 TTGTACTCCCTCCGTTTTTATTTAC 57.329 36.000 0.00 0.00 0.00 2.01
1998 2121 7.008021 TGTACTCCCTCCGTTTTTATTTACT 57.992 36.000 0.00 0.00 0.00 2.24
1999 2122 7.099120 TGTACTCCCTCCGTTTTTATTTACTC 58.901 38.462 0.00 0.00 0.00 2.59
2000 2123 6.370186 ACTCCCTCCGTTTTTATTTACTCT 57.630 37.500 0.00 0.00 0.00 3.24
2001 2124 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
2002 2125 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
2003 2126 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
2004 2127 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
2005 2128 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
2006 2129 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
2007 2130 8.283291 CCTCCGTTTTTATTTACTCTGCATATC 58.717 37.037 0.00 0.00 0.00 1.63
2008 2131 8.725405 TCCGTTTTTATTTACTCTGCATATCA 57.275 30.769 0.00 0.00 0.00 2.15
2009 2132 8.826710 TCCGTTTTTATTTACTCTGCATATCAG 58.173 33.333 0.00 0.00 44.21 2.90
2020 2143 5.665916 TCTGCATATCAGAGTTGACTGAA 57.334 39.130 0.00 0.00 46.34 3.02
2021 2144 5.658468 TCTGCATATCAGAGTTGACTGAAG 58.342 41.667 0.00 0.00 46.34 3.02
2022 2145 5.186603 TCTGCATATCAGAGTTGACTGAAGT 59.813 40.000 0.00 0.00 46.34 3.01
2023 2146 6.626844 TCTGCATATCAGAGTTGACTGAAGTC 60.627 42.308 3.41 3.41 46.34 3.01
2198 2321 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
2199 2322 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
2200 2323 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
2215 2338 7.281991 CTTTGACCAAAGCTAATATGCAAAC 57.718 36.000 9.25 0.00 40.94 2.93
2216 2339 6.588719 TTGACCAAAGCTAATATGCAAACT 57.411 33.333 0.00 0.00 34.99 2.66
2217 2340 7.695480 TTGACCAAAGCTAATATGCAAACTA 57.305 32.000 0.00 0.00 34.99 2.24
2218 2341 7.695480 TGACCAAAGCTAATATGCAAACTAA 57.305 32.000 0.00 0.00 34.99 2.24
2219 2342 8.116651 TGACCAAAGCTAATATGCAAACTAAA 57.883 30.769 0.00 0.00 34.99 1.85
2220 2343 8.748412 TGACCAAAGCTAATATGCAAACTAAAT 58.252 29.630 0.00 0.00 34.99 1.40
2231 2354 9.581099 AATATGCAAACTAAATAAAAACGGAGG 57.419 29.630 0.00 0.00 0.00 4.30
2232 2355 5.774630 TGCAAACTAAATAAAAACGGAGGG 58.225 37.500 0.00 0.00 0.00 4.30
2233 2356 5.535406 TGCAAACTAAATAAAAACGGAGGGA 59.465 36.000 0.00 0.00 0.00 4.20
2234 2357 6.090783 GCAAACTAAATAAAAACGGAGGGAG 58.909 40.000 0.00 0.00 0.00 4.30
2250 2373 4.202357 GGAGGGAGTATGTATGTGATGCAA 60.202 45.833 0.00 0.00 0.00 4.08
2265 2388 2.166821 TGCAACAACCATTTGGATGC 57.833 45.000 3.01 8.62 44.12 3.91
2268 2391 2.674747 GCAACAACCATTTGGATGCGAT 60.675 45.455 3.01 0.00 41.15 4.58
2272 2395 2.924926 CAACCATTTGGATGCGATGTTG 59.075 45.455 3.01 0.00 38.94 3.33
2280 2403 3.346315 TGGATGCGATGTTGATTCTTGT 58.654 40.909 0.00 0.00 0.00 3.16
2284 2407 3.002791 TGCGATGTTGATTCTTGTCCTC 58.997 45.455 0.00 0.00 0.00 3.71
2289 2412 3.689347 TGTTGATTCTTGTCCTCCATGG 58.311 45.455 4.97 4.97 37.10 3.66
2334 2457 2.434774 GCCAAGGAAGGGAACGGT 59.565 61.111 0.00 0.00 0.00 4.83
2337 2460 2.032071 AAGGAAGGGAACGGTGCG 59.968 61.111 0.00 0.00 0.00 5.34
2406 2529 1.368579 CCCGTGGTACGACAACCTT 59.631 57.895 8.81 0.00 46.05 3.50
2615 2739 1.064654 GCCATCTCTTCATCAAACGCC 59.935 52.381 0.00 0.00 0.00 5.68
2711 2835 1.133253 CATCCAAGACGCGTGCAAG 59.867 57.895 20.70 2.46 0.00 4.01
2738 2862 0.107116 AGCCCATCTACGACGAGACT 60.107 55.000 0.00 0.00 0.00 3.24
2858 2982 0.913205 ACCGCCCCAATGTGTACATA 59.087 50.000 0.00 0.00 35.10 2.29
2873 2997 5.423931 TGTGTACATAAAGATCCCAGCTACA 59.576 40.000 0.00 0.00 0.00 2.74
2882 3006 1.279496 TCCCAGCTACAGCAGAATGT 58.721 50.000 3.70 0.00 45.16 2.71
2983 3111 8.370940 TCATCATTATCTTGTATCTCCTTGGTC 58.629 37.037 0.00 0.00 0.00 4.02
2989 3117 1.066430 TGTATCTCCTTGGTCGCCAAC 60.066 52.381 7.15 0.00 38.75 3.77
3002 3130 2.281762 GTCGCCAACGTATCATCTGTTC 59.718 50.000 0.00 0.00 41.18 3.18
3026 3154 0.539986 TTCCCCACTGGATCGCTTAC 59.460 55.000 0.00 0.00 44.66 2.34
3075 3203 7.026631 TGTGCTTGTTATATACTTTGATGCC 57.973 36.000 0.00 0.00 0.00 4.40
3124 3252 1.753649 TCGCTGCAGCTTATCTTCTCT 59.246 47.619 34.22 0.00 39.32 3.10
3202 3330 2.336945 TGAGCGACTTATCCCGAGTA 57.663 50.000 0.00 0.00 0.00 2.59
3280 3408 2.370519 TGAGAAGATTGGAACACCGGAA 59.629 45.455 9.46 0.00 39.29 4.30
3291 3419 4.035102 ACCGGAAGCTCTTGCCCC 62.035 66.667 9.46 0.00 40.80 5.80
3318 3446 5.321927 GGGAAAGGTAGAGACAATTTGGAA 58.678 41.667 0.78 0.00 0.00 3.53
3328 3456 5.643777 AGAGACAATTTGGAATTACCTGTCG 59.356 40.000 0.78 0.00 41.76 4.35
3426 3556 4.796038 AGCACAAGCAAAGATAGCAAAT 57.204 36.364 0.00 0.00 45.49 2.32
3513 3643 0.773644 AGAGGTTGTTGTGGGCATCT 59.226 50.000 0.00 0.00 0.00 2.90
3589 3719 0.249322 ACCTGACACCGTGAGTTTCG 60.249 55.000 5.28 0.00 0.00 3.46
3601 3731 2.866762 GTGAGTTTCGACAGCAAGTTCT 59.133 45.455 0.00 0.00 0.00 3.01
3614 3744 4.730521 CAGCAAGTTCTTTTCGTCTTGTTC 59.269 41.667 0.00 0.00 39.28 3.18
3618 3748 4.178540 AGTTCTTTTCGTCTTGTTCGTCA 58.821 39.130 0.00 0.00 0.00 4.35
3684 3816 1.826385 AAGCGCATCCTAACTTGCTT 58.174 45.000 11.47 0.00 37.80 3.91
3776 3908 0.800683 TTGCTAGGACAATCGACGCG 60.801 55.000 3.53 3.53 0.00 6.01
3791 3923 1.917921 CGCGAACGTATCAGAAGCC 59.082 57.895 0.00 0.00 33.53 4.35
3965 4097 3.427503 CCAACCTGTAGGCGCTAAAATTG 60.428 47.826 7.64 3.98 39.32 2.32
3967 4099 3.418047 ACCTGTAGGCGCTAAAATTGTT 58.582 40.909 7.64 0.00 39.32 2.83
4040 4172 2.438075 CCAGCTTGCTGGCTCTCC 60.438 66.667 25.97 0.00 41.00 3.71
4050 4182 0.182299 CTGGCTCTCCCCTTCCATTC 59.818 60.000 0.00 0.00 0.00 2.67
4129 4264 3.403038 GCTGTCATTGTGTAACTGAGGT 58.597 45.455 0.00 0.00 38.04 3.85
4138 4273 3.625764 TGTGTAACTGAGGTTTGTTGCTC 59.374 43.478 0.00 0.00 38.04 4.26
4232 4368 7.168219 TGCATTTCTCCTTACTGTTGTTATCT 58.832 34.615 0.00 0.00 0.00 1.98
4235 4371 9.653287 CATTTCTCCTTACTGTTGTTATCTGTA 57.347 33.333 0.00 0.00 0.00 2.74
4237 4373 9.653287 TTTCTCCTTACTGTTGTTATCTGTATG 57.347 33.333 0.00 0.00 0.00 2.39
4238 4374 8.362464 TCTCCTTACTGTTGTTATCTGTATGT 57.638 34.615 0.00 0.00 0.00 2.29
4239 4375 8.812972 TCTCCTTACTGTTGTTATCTGTATGTT 58.187 33.333 0.00 0.00 0.00 2.71
4240 4376 8.997621 TCCTTACTGTTGTTATCTGTATGTTC 57.002 34.615 0.00 0.00 0.00 3.18
4241 4377 7.758076 TCCTTACTGTTGTTATCTGTATGTTCG 59.242 37.037 0.00 0.00 0.00 3.95
4242 4378 5.779806 ACTGTTGTTATCTGTATGTTCGC 57.220 39.130 0.00 0.00 0.00 4.70
4243 4379 5.234752 ACTGTTGTTATCTGTATGTTCGCA 58.765 37.500 0.00 0.00 0.00 5.10
4244 4380 5.699001 ACTGTTGTTATCTGTATGTTCGCAA 59.301 36.000 0.00 0.00 0.00 4.85
4245 4381 6.128553 ACTGTTGTTATCTGTATGTTCGCAAG 60.129 38.462 0.00 0.00 0.00 4.01
4343 4513 6.645415 ACGGACACTTTGATCTAACTAAACAG 59.355 38.462 0.00 0.00 0.00 3.16
4390 4560 9.474313 AAGTAATCTTTATGCCATTTGTAGGAA 57.526 29.630 0.00 0.00 0.00 3.36
4392 4562 6.715347 ATCTTTATGCCATTTGTAGGAACC 57.285 37.500 0.00 0.00 0.00 3.62
4399 4569 7.707624 ATGCCATTTGTAGGAACCATATATG 57.292 36.000 5.68 5.68 0.00 1.78
4401 4571 7.750655 TGCCATTTGTAGGAACCATATATGTA 58.249 34.615 11.73 0.00 0.00 2.29
4406 4576 8.846943 TTTGTAGGAACCATATATGTATGCTG 57.153 34.615 11.73 0.00 37.06 4.41
4409 4579 8.655901 TGTAGGAACCATATATGTATGCTGAAA 58.344 33.333 11.73 0.00 37.06 2.69
4414 4584 9.132521 GAACCATATATGTATGCTGAAAATTGC 57.867 33.333 11.73 0.00 37.06 3.56
4417 4587 7.093640 CCATATATGTATGCTGAAAATTGCCCT 60.094 37.037 11.73 0.00 37.06 5.19
4483 4653 5.603170 ATTTTATAACTTCGAGGACGGGA 57.397 39.130 0.00 0.00 40.21 5.14
4484 4654 4.644103 TTTATAACTTCGAGGACGGGAG 57.356 45.455 0.00 0.00 40.21 4.30
4496 4666 2.447630 ACGGGAGTGGTGAATGTGA 58.552 52.632 0.00 0.00 44.82 3.58
4497 4667 0.762418 ACGGGAGTGGTGAATGTGAA 59.238 50.000 0.00 0.00 44.82 3.18
4498 4668 1.351017 ACGGGAGTGGTGAATGTGAAT 59.649 47.619 0.00 0.00 44.82 2.57
4499 4669 2.569853 ACGGGAGTGGTGAATGTGAATA 59.430 45.455 0.00 0.00 44.82 1.75
4500 4670 3.008594 ACGGGAGTGGTGAATGTGAATAA 59.991 43.478 0.00 0.00 44.82 1.40
4501 4671 3.374058 CGGGAGTGGTGAATGTGAATAAC 59.626 47.826 0.00 0.00 0.00 1.89
4502 4672 4.589908 GGGAGTGGTGAATGTGAATAACT 58.410 43.478 0.00 0.00 0.00 2.24
4503 4673 5.625886 CGGGAGTGGTGAATGTGAATAACTA 60.626 44.000 0.00 0.00 0.00 2.24
4504 4674 5.817816 GGGAGTGGTGAATGTGAATAACTAG 59.182 44.000 0.00 0.00 0.00 2.57
4505 4675 5.817816 GGAGTGGTGAATGTGAATAACTAGG 59.182 44.000 0.00 0.00 0.00 3.02
4506 4676 6.374417 AGTGGTGAATGTGAATAACTAGGT 57.626 37.500 0.00 0.00 0.00 3.08
4536 4706 5.824904 AATGCTATCAACATTGGTCTGTC 57.175 39.130 0.00 0.00 36.41 3.51
4608 4778 5.001232 TCTTAAACACATGACACCTTAGGC 58.999 41.667 0.00 0.00 0.00 3.93
4625 4795 5.106157 CCTTAGGCACACTTTATTTGGACAG 60.106 44.000 0.00 0.00 0.00 3.51
4629 4799 3.317993 GCACACTTTATTTGGACAGTGGT 59.682 43.478 0.00 0.00 40.90 4.16
4632 4802 5.067153 CACACTTTATTTGGACAGTGGTGAA 59.933 40.000 0.00 0.00 40.90 3.18
4633 4803 5.833131 ACACTTTATTTGGACAGTGGTGAAT 59.167 36.000 0.00 0.00 40.90 2.57
4634 4804 6.151691 CACTTTATTTGGACAGTGGTGAATG 58.848 40.000 0.00 0.00 34.21 2.67
4635 4805 5.833131 ACTTTATTTGGACAGTGGTGAATGT 59.167 36.000 0.00 0.00 0.00 2.71
4636 4806 5.703978 TTATTTGGACAGTGGTGAATGTG 57.296 39.130 0.00 0.00 0.00 3.21
4637 4807 3.289407 TTTGGACAGTGGTGAATGTGA 57.711 42.857 0.00 0.00 0.00 3.58
4638 4808 3.289407 TTGGACAGTGGTGAATGTGAA 57.711 42.857 0.00 0.00 0.00 3.18
4639 4809 3.507162 TGGACAGTGGTGAATGTGAAT 57.493 42.857 0.00 0.00 0.00 2.57
4640 4810 4.632327 TGGACAGTGGTGAATGTGAATA 57.368 40.909 0.00 0.00 0.00 1.75
4641 4811 4.979335 TGGACAGTGGTGAATGTGAATAA 58.021 39.130 0.00 0.00 0.00 1.40
4642 4812 4.759693 TGGACAGTGGTGAATGTGAATAAC 59.240 41.667 0.00 0.00 0.00 1.89
4643 4813 5.003804 GGACAGTGGTGAATGTGAATAACT 58.996 41.667 0.00 0.00 0.00 2.24
4644 4814 6.170506 GGACAGTGGTGAATGTGAATAACTA 58.829 40.000 0.00 0.00 0.00 2.24
4645 4815 6.313905 GGACAGTGGTGAATGTGAATAACTAG 59.686 42.308 0.00 0.00 0.00 2.57
4646 4816 6.173339 ACAGTGGTGAATGTGAATAACTAGG 58.827 40.000 0.00 0.00 0.00 3.02
4647 4817 6.173339 CAGTGGTGAATGTGAATAACTAGGT 58.827 40.000 0.00 0.00 0.00 3.08
4648 4818 6.313905 CAGTGGTGAATGTGAATAACTAGGTC 59.686 42.308 0.00 0.00 0.00 3.85
4649 4819 6.013725 AGTGGTGAATGTGAATAACTAGGTCA 60.014 38.462 0.00 0.00 0.00 4.02
4650 4820 6.823689 GTGGTGAATGTGAATAACTAGGTCAT 59.176 38.462 0.00 0.00 0.00 3.06
4678 4848 5.523916 CGCAACAATAATGAGCTAACCTAGT 59.476 40.000 0.00 0.00 0.00 2.57
4679 4849 6.700081 CGCAACAATAATGAGCTAACCTAGTA 59.300 38.462 0.00 0.00 0.00 1.82
4680 4850 7.306632 CGCAACAATAATGAGCTAACCTAGTAC 60.307 40.741 0.00 0.00 0.00 2.73
4681 4851 7.711339 GCAACAATAATGAGCTAACCTAGTACT 59.289 37.037 0.00 0.00 0.00 2.73
4682 4852 9.250624 CAACAATAATGAGCTAACCTAGTACTC 57.749 37.037 0.00 0.00 0.00 2.59
4683 4853 8.770010 ACAATAATGAGCTAACCTAGTACTCT 57.230 34.615 0.00 0.00 0.00 3.24
4684 4854 9.863650 ACAATAATGAGCTAACCTAGTACTCTA 57.136 33.333 0.00 0.00 0.00 2.43
4718 4908 8.264347 ACCCATTAACTCATGAACAAAAACTTT 58.736 29.630 0.00 0.00 0.00 2.66
4732 4922 7.786178 ACAAAAACTTTTAAAGCATTCCCTC 57.214 32.000 4.42 0.00 0.00 4.30
4754 4944 5.529289 TCCAGACAGGAATATAAGTCAGGT 58.471 41.667 0.00 0.00 45.65 4.00
4794 4984 3.845775 CCATTTAACGAGCGAAACATGTG 59.154 43.478 0.00 0.00 0.00 3.21
4819 5049 1.518325 TGCCACACACTAACCAATCG 58.482 50.000 0.00 0.00 0.00 3.34
4823 5053 3.003897 GCCACACACTAACCAATCGAAAA 59.996 43.478 0.00 0.00 0.00 2.29
4827 5057 6.370442 CCACACACTAACCAATCGAAAATCTA 59.630 38.462 0.00 0.00 0.00 1.98
4834 5064 3.287222 CCAATCGAAAATCTAAGGCCCA 58.713 45.455 0.00 0.00 0.00 5.36
4887 5117 5.241949 AGAAATACTATCGAACTCCATCGCT 59.758 40.000 0.00 0.00 42.44 4.93
4888 5118 2.783828 ACTATCGAACTCCATCGCTG 57.216 50.000 0.00 0.00 42.44 5.18
4925 5155 8.826710 CAACAATATACACACGAAATATCCAGT 58.173 33.333 0.00 0.00 0.00 4.00
4958 5188 7.667043 TTGGTAGATTGATTTCAGTACACAC 57.333 36.000 0.00 0.00 0.00 3.82
4965 5195 4.055360 TGATTTCAGTACACACAAGTCGG 58.945 43.478 0.00 0.00 0.00 4.79
4993 5223 2.802787 ACGAGACAGGTTTCAGACAG 57.197 50.000 0.00 0.00 0.00 3.51
5019 5249 8.333186 GCAAAGAACTACGGTATTATTTACAGG 58.667 37.037 0.00 0.00 0.00 4.00
5065 5295 7.676468 AGATACTTCTTCCCTTTACAGACTCTT 59.324 37.037 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.507742 TGGACCTCTCCATAGGCCATA 59.492 52.381 5.01 0.00 42.15 2.74
19 20 0.268869 TGGACCTCTCCATAGGCCAT 59.731 55.000 5.01 0.00 42.15 4.40
21 22 4.728780 TGGACCTCTCCATAGGCC 57.271 61.111 0.00 0.00 42.15 5.19
33 35 2.486966 GCTTCTTGCGCATGGACC 59.513 61.111 21.59 2.27 0.00 4.46
48 50 1.203523 TGTGTTTTCGGTTGCAAAGCT 59.796 42.857 0.00 0.00 43.41 3.74
56 58 1.404035 GCCTCTGTTGTGTTTTCGGTT 59.596 47.619 0.00 0.00 0.00 4.44
77 79 4.307908 GCCGCACACGACAACACC 62.308 66.667 0.00 0.00 43.93 4.16
101 103 5.852827 TCCAATGTTGTGAATTTCCTTTCC 58.147 37.500 0.00 0.00 0.00 3.13
110 112 9.865321 CTTCAAGAAATATCCAATGTTGTGAAT 57.135 29.630 0.00 0.00 0.00 2.57
198 200 1.335324 CCTCGACAACGACGTTAGGTT 60.335 52.381 13.77 0.00 43.81 3.50
200 202 0.518636 TCCTCGACAACGACGTTAGG 59.481 55.000 17.50 17.50 43.81 2.69
203 205 0.664761 TTCTCCTCGACAACGACGTT 59.335 50.000 7.57 7.57 43.81 3.99
215 221 5.532779 AGTTGAATTTGTCCACTTTCTCCTC 59.467 40.000 0.00 0.00 27.70 3.71
259 266 5.130975 AGCTTATGAATAGTGTCATGTCCCA 59.869 40.000 0.00 0.00 38.69 4.37
266 273 9.677567 GAAAACAAAAGCTTATGAATAGTGTCA 57.322 29.630 0.00 0.00 0.00 3.58
279 286 8.825667 TGTCTGTAAAAAGAAAACAAAAGCTT 57.174 26.923 0.00 0.00 0.00 3.74
287 294 8.447053 TGGCAAATTTGTCTGTAAAAAGAAAAC 58.553 29.630 22.47 0.00 33.01 2.43
334 353 7.420800 GGTGAATGCCATAGTCTATTTTTGAG 58.579 38.462 0.00 0.00 0.00 3.02
351 370 2.027837 AGAAATGGCTTTGGGTGAATGC 60.028 45.455 0.00 0.00 34.63 3.56
352 371 3.967332 AGAAATGGCTTTGGGTGAATG 57.033 42.857 0.00 0.00 0.00 2.67
384 412 1.203162 TGGCTCCCCATTGACAACAAT 60.203 47.619 0.00 0.00 46.10 2.71
385 413 0.187117 TGGCTCCCCATTGACAACAA 59.813 50.000 0.00 0.00 40.42 2.83
386 414 0.187117 TTGGCTCCCCATTGACAACA 59.813 50.000 0.00 0.00 41.78 3.33
393 421 0.831711 GTTGTGGTTGGCTCCCCATT 60.832 55.000 0.00 0.00 41.78 3.16
413 441 2.087646 TGAGAGTGAGAGTGACGATGG 58.912 52.381 0.00 0.00 0.00 3.51
421 449 4.262420 GCTTTTCTCCTTGAGAGTGAGAGT 60.262 45.833 0.00 0.00 43.71 3.24
428 456 1.082690 GCCGCTTTTCTCCTTGAGAG 58.917 55.000 0.00 0.00 39.98 3.20
429 457 0.321653 GGCCGCTTTTCTCCTTGAGA 60.322 55.000 0.00 0.00 36.86 3.27
430 458 0.606401 TGGCCGCTTTTCTCCTTGAG 60.606 55.000 0.00 0.00 0.00 3.02
431 459 0.606401 CTGGCCGCTTTTCTCCTTGA 60.606 55.000 0.00 0.00 0.00 3.02
432 460 0.890996 ACTGGCCGCTTTTCTCCTTG 60.891 55.000 0.00 0.00 0.00 3.61
433 461 0.178990 AACTGGCCGCTTTTCTCCTT 60.179 50.000 0.00 0.00 0.00 3.36
434 462 0.606673 GAACTGGCCGCTTTTCTCCT 60.607 55.000 0.00 0.00 0.00 3.69
435 463 1.876664 GAACTGGCCGCTTTTCTCC 59.123 57.895 0.00 0.00 0.00 3.71
436 464 0.949105 TCGAACTGGCCGCTTTTCTC 60.949 55.000 0.00 0.00 0.00 2.87
437 465 0.321653 ATCGAACTGGCCGCTTTTCT 60.322 50.000 0.00 0.00 0.00 2.52
438 466 0.097150 GATCGAACTGGCCGCTTTTC 59.903 55.000 0.00 0.00 0.00 2.29
439 467 1.305930 GGATCGAACTGGCCGCTTTT 61.306 55.000 0.00 0.00 0.00 2.27
450 478 0.035439 TTGGAAGCAGGGGATCGAAC 60.035 55.000 0.00 0.00 0.00 3.95
477 508 5.007724 CCTTGGTTCTAGAAAATGGCGATAC 59.992 44.000 6.78 0.00 0.00 2.24
497 528 0.940991 GCCACTTTTCTTGCGCCTTG 60.941 55.000 4.18 0.00 0.00 3.61
511 542 0.389391 ATCGAATCGAATCGGCCACT 59.611 50.000 21.78 0.80 42.92 4.00
516 547 2.061773 CAGGGAATCGAATCGAATCGG 58.938 52.381 21.78 4.69 42.92 4.18
520 551 2.758423 TGAGACAGGGAATCGAATCGAA 59.242 45.455 10.12 0.00 39.99 3.71
554 585 3.004629 TCAAGTAGCCAATGCAAACAGTG 59.995 43.478 0.00 0.00 41.51 3.66
555 586 3.221771 TCAAGTAGCCAATGCAAACAGT 58.778 40.909 0.00 0.00 41.13 3.55
556 587 3.921119 TCAAGTAGCCAATGCAAACAG 57.079 42.857 0.00 0.00 41.13 3.16
558 589 4.708726 AGATCAAGTAGCCAATGCAAAC 57.291 40.909 0.00 0.00 41.13 2.93
559 590 4.618927 GCAAGATCAAGTAGCCAATGCAAA 60.619 41.667 0.00 0.00 41.13 3.68
560 591 3.119388 GCAAGATCAAGTAGCCAATGCAA 60.119 43.478 0.00 0.00 41.13 4.08
563 594 3.488721 GCAGCAAGATCAAGTAGCCAATG 60.489 47.826 0.00 0.00 0.00 2.82
564 595 2.686915 GCAGCAAGATCAAGTAGCCAAT 59.313 45.455 0.00 0.00 0.00 3.16
565 596 2.086869 GCAGCAAGATCAAGTAGCCAA 58.913 47.619 0.00 0.00 0.00 4.52
566 597 1.280133 AGCAGCAAGATCAAGTAGCCA 59.720 47.619 0.00 0.00 0.00 4.75
567 598 1.939255 GAGCAGCAAGATCAAGTAGCC 59.061 52.381 0.00 0.00 31.47 3.93
568 599 2.903798 AGAGCAGCAAGATCAAGTAGC 58.096 47.619 0.00 0.00 34.30 3.58
569 600 4.437121 GCAAAGAGCAGCAAGATCAAGTAG 60.437 45.833 0.00 0.00 44.79 2.57
570 601 3.438087 GCAAAGAGCAGCAAGATCAAGTA 59.562 43.478 0.00 0.00 44.79 2.24
571 602 2.228343 GCAAAGAGCAGCAAGATCAAGT 59.772 45.455 0.00 0.00 44.79 3.16
583 614 7.727743 TGGTTCAATCCAGTAGCAAAGAGCA 62.728 44.000 0.00 0.00 38.13 4.26
585 616 4.326826 TGGTTCAATCCAGTAGCAAAGAG 58.673 43.478 0.00 0.00 33.19 2.85
587 618 4.691860 CTGGTTCAATCCAGTAGCAAAG 57.308 45.455 4.75 0.00 46.92 2.77
596 627 3.135225 CAACGTGTACTGGTTCAATCCA 58.865 45.455 0.00 0.00 36.00 3.41
597 628 2.095919 GCAACGTGTACTGGTTCAATCC 60.096 50.000 0.00 0.00 0.00 3.01
598 629 2.806244 AGCAACGTGTACTGGTTCAATC 59.194 45.455 0.00 0.00 0.00 2.67
599 630 2.846193 AGCAACGTGTACTGGTTCAAT 58.154 42.857 0.00 0.00 0.00 2.57
600 631 2.319136 AGCAACGTGTACTGGTTCAA 57.681 45.000 0.00 0.00 0.00 2.69
601 632 2.319136 AAGCAACGTGTACTGGTTCA 57.681 45.000 0.00 0.00 0.00 3.18
602 633 3.387397 AGTAAGCAACGTGTACTGGTTC 58.613 45.455 5.73 0.16 35.12 3.62
603 634 3.464111 AGTAAGCAACGTGTACTGGTT 57.536 42.857 7.47 7.47 37.12 3.67
604 635 4.170292 CTAGTAAGCAACGTGTACTGGT 57.830 45.455 10.21 0.00 30.81 4.00
621 652 2.993853 GCCAGAGGCCAAGCTAGT 59.006 61.111 5.01 0.00 44.06 2.57
635 666 0.547471 TGTGAGGATTGAGGAGGCCA 60.547 55.000 5.01 0.00 0.00 5.36
636 667 0.620556 TTGTGAGGATTGAGGAGGCC 59.379 55.000 0.00 0.00 0.00 5.19
637 668 1.280421 ACTTGTGAGGATTGAGGAGGC 59.720 52.381 0.00 0.00 0.00 4.70
638 669 2.417924 CGACTTGTGAGGATTGAGGAGG 60.418 54.545 0.00 0.00 0.00 4.30
639 670 2.232452 ACGACTTGTGAGGATTGAGGAG 59.768 50.000 0.00 0.00 0.00 3.69
640 671 2.248248 ACGACTTGTGAGGATTGAGGA 58.752 47.619 0.00 0.00 0.00 3.71
641 672 2.751166 ACGACTTGTGAGGATTGAGG 57.249 50.000 0.00 0.00 0.00 3.86
658 689 4.935205 TGAGGATTGAGTAATTGAACCACG 59.065 41.667 0.00 0.00 0.00 4.94
673 704 4.491676 CTTGGTTTGAGCATTGAGGATTG 58.508 43.478 0.00 0.00 0.00 2.67
674 705 3.512724 CCTTGGTTTGAGCATTGAGGATT 59.487 43.478 0.00 0.00 0.00 3.01
675 706 3.094572 CCTTGGTTTGAGCATTGAGGAT 58.905 45.455 0.00 0.00 0.00 3.24
676 707 2.108075 TCCTTGGTTTGAGCATTGAGGA 59.892 45.455 0.00 0.00 30.28 3.71
677 708 2.490903 CTCCTTGGTTTGAGCATTGAGG 59.509 50.000 0.00 0.00 0.00 3.86
681 712 2.800250 CCTCTCCTTGGTTTGAGCATT 58.200 47.619 0.00 0.00 0.00 3.56
682 713 1.615384 GCCTCTCCTTGGTTTGAGCAT 60.615 52.381 0.00 0.00 0.00 3.79
690 721 0.113190 CCCTTTTGCCTCTCCTTGGT 59.887 55.000 0.00 0.00 0.00 3.67
735 771 2.104331 GTGCGATGATCCGGTCGT 59.896 61.111 13.01 6.30 39.87 4.34
817 868 4.098807 GGTTTCTGGTATTTGTGGTGTGTT 59.901 41.667 0.00 0.00 0.00 3.32
864 915 9.066892 TCAATAAATAGATGCACCATTCTAACC 57.933 33.333 0.00 0.00 0.00 2.85
865 916 9.884465 GTCAATAAATAGATGCACCATTCTAAC 57.116 33.333 0.00 0.00 0.00 2.34
914 966 4.319177 CACCGATCTGTCTTTCCTTTCTT 58.681 43.478 0.00 0.00 0.00 2.52
916 968 2.416893 GCACCGATCTGTCTTTCCTTTC 59.583 50.000 0.00 0.00 0.00 2.62
923 983 0.667487 CACACGCACCGATCTGTCTT 60.667 55.000 0.00 0.00 0.00 3.01
927 987 1.807165 CCTCACACGCACCGATCTG 60.807 63.158 0.00 0.00 0.00 2.90
1013 1076 2.606519 CTCGGGGGTTGGTGAGGA 60.607 66.667 0.00 0.00 0.00 3.71
1014 1077 4.410400 GCTCGGGGGTTGGTGAGG 62.410 72.222 0.00 0.00 0.00 3.86
1015 1078 4.410400 GGCTCGGGGGTTGGTGAG 62.410 72.222 0.00 0.00 0.00 3.51
1207 1285 4.742201 CGGAGAGGGGTGCGTGTG 62.742 72.222 0.00 0.00 0.00 3.82
1216 1294 3.390671 TTAGGAGGGGCGGAGAGGG 62.391 68.421 0.00 0.00 0.00 4.30
1219 1297 2.042230 GGTTAGGAGGGGCGGAGA 60.042 66.667 0.00 0.00 0.00 3.71
1220 1298 2.041819 AGGTTAGGAGGGGCGGAG 60.042 66.667 0.00 0.00 0.00 4.63
1221 1299 2.042230 GAGGTTAGGAGGGGCGGA 60.042 66.667 0.00 0.00 0.00 5.54
1222 1300 1.687297 GAAGAGGTTAGGAGGGGCGG 61.687 65.000 0.00 0.00 0.00 6.13
1223 1301 0.688087 AGAAGAGGTTAGGAGGGGCG 60.688 60.000 0.00 0.00 0.00 6.13
1224 1302 1.124780 GAGAAGAGGTTAGGAGGGGC 58.875 60.000 0.00 0.00 0.00 5.80
1225 1303 1.292546 AGGAGAAGAGGTTAGGAGGGG 59.707 57.143 0.00 0.00 0.00 4.79
1226 1304 2.673258 GAGGAGAAGAGGTTAGGAGGG 58.327 57.143 0.00 0.00 0.00 4.30
1227 1305 2.303175 CGAGGAGAAGAGGTTAGGAGG 58.697 57.143 0.00 0.00 0.00 4.30
1228 1306 1.679153 GCGAGGAGAAGAGGTTAGGAG 59.321 57.143 0.00 0.00 0.00 3.69
1229 1307 1.765230 GCGAGGAGAAGAGGTTAGGA 58.235 55.000 0.00 0.00 0.00 2.94
1230 1308 0.382515 CGCGAGGAGAAGAGGTTAGG 59.617 60.000 0.00 0.00 0.00 2.69
1231 1309 1.064357 GACGCGAGGAGAAGAGGTTAG 59.936 57.143 15.93 0.00 0.00 2.34
1232 1310 1.093159 GACGCGAGGAGAAGAGGTTA 58.907 55.000 15.93 0.00 0.00 2.85
1233 1311 1.884444 GACGCGAGGAGAAGAGGTT 59.116 57.895 15.93 0.00 0.00 3.50
1234 1312 2.400158 CGACGCGAGGAGAAGAGGT 61.400 63.158 15.93 0.00 0.00 3.85
1237 1315 3.812019 GGCGACGCGAGGAGAAGA 61.812 66.667 15.93 0.00 0.00 2.87
1252 1342 2.546778 TCACGAATCTAATCAACCGGC 58.453 47.619 0.00 0.00 0.00 6.13
1392 1487 4.130857 TGTGAAAGCGTGAATTAAGACCA 58.869 39.130 0.00 0.00 0.00 4.02
1393 1488 4.213482 ACTGTGAAAGCGTGAATTAAGACC 59.787 41.667 0.00 0.00 0.00 3.85
1394 1489 5.344207 ACTGTGAAAGCGTGAATTAAGAC 57.656 39.130 0.00 0.00 0.00 3.01
1396 1491 4.840772 CGAACTGTGAAAGCGTGAATTAAG 59.159 41.667 0.00 0.00 0.00 1.85
1397 1492 4.508492 TCGAACTGTGAAAGCGTGAATTAA 59.492 37.500 0.00 0.00 0.00 1.40
1398 1493 4.052608 TCGAACTGTGAAAGCGTGAATTA 58.947 39.130 0.00 0.00 0.00 1.40
1399 1494 2.869801 TCGAACTGTGAAAGCGTGAATT 59.130 40.909 0.00 0.00 0.00 2.17
1400 1495 2.479837 TCGAACTGTGAAAGCGTGAAT 58.520 42.857 0.00 0.00 0.00 2.57
1441 1536 4.957684 CATCAGCGCCGCGATCCT 62.958 66.667 18.91 0.49 0.00 3.24
1763 1872 0.610687 AGGAGGCTATGCTTATCGCC 59.389 55.000 0.00 2.58 42.79 5.54
1765 1874 3.393089 AACAGGAGGCTATGCTTATCG 57.607 47.619 0.00 0.00 0.00 2.92
1782 1895 3.572255 GGCCAGTAACAGATGGAAAAACA 59.428 43.478 0.00 0.00 39.02 2.83
1803 1916 1.667236 TGCAAAGCCATACGAGATGG 58.333 50.000 14.42 14.42 41.99 3.51
1804 1917 2.225019 GGATGCAAAGCCATACGAGATG 59.775 50.000 0.00 0.00 0.00 2.90
1831 1944 6.027749 GCAACTTGGTGTACAATATTAGTGC 58.972 40.000 0.00 0.00 38.65 4.40
1865 1978 9.950496 AGTGAACTTTCTTCTATACATGAACAT 57.050 29.630 0.00 0.00 0.00 2.71
1889 2002 7.607607 TGATCATGAGCACTGTAAAATGTTAGT 59.392 33.333 10.16 0.00 0.00 2.24
1961 2084 6.235664 GGAGGGAGTACAATACAAACAGAAA 58.764 40.000 0.00 0.00 0.00 2.52
1964 2087 4.181578 CGGAGGGAGTACAATACAAACAG 58.818 47.826 0.00 0.00 0.00 3.16
1978 2101 5.064834 GCAGAGTAAATAAAAACGGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
1979 2102 4.939439 GCAGAGTAAATAAAAACGGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
1980 2103 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
1981 2104 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
1982 2105 8.826710 TGATATGCAGAGTAAATAAAAACGGAG 58.173 33.333 0.00 0.00 0.00 4.63
1983 2106 8.725405 TGATATGCAGAGTAAATAAAAACGGA 57.275 30.769 0.00 0.00 0.00 4.69
1998 2121 6.626844 GACTTCAGTCAACTCTGATATGCAGA 60.627 42.308 1.86 0.00 46.18 4.26
1999 2122 5.417811 ACTTCAGTCAACTCTGATATGCAG 58.582 41.667 0.00 0.00 42.84 4.41
2000 2123 5.411831 ACTTCAGTCAACTCTGATATGCA 57.588 39.130 0.00 0.00 42.84 3.96
2001 2124 5.964887 GACTTCAGTCAACTCTGATATGC 57.035 43.478 1.86 0.00 42.84 3.14
2166 2289 6.253512 GTCAAGCTTTACAAACTTTGACCAAG 59.746 38.462 8.55 7.77 38.64 3.61
2167 2290 6.071616 AGTCAAGCTTTACAAACTTTGACCAA 60.072 34.615 13.07 0.00 0.00 3.67
2168 2291 5.417580 AGTCAAGCTTTACAAACTTTGACCA 59.582 36.000 13.07 0.00 0.00 4.02
2169 2292 5.891451 AGTCAAGCTTTACAAACTTTGACC 58.109 37.500 13.07 0.00 0.00 4.02
2170 2293 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
2173 2296 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
2174 2297 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
2175 2298 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
2176 2299 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
2177 2300 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
2178 2301 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
2179 2302 5.890334 CTTTGGTCAAAGTCAAGCTTTACA 58.110 37.500 13.07 0.00 44.95 2.41
2192 2315 6.991938 AGTTTGCATATTAGCTTTGGTCAAA 58.008 32.000 0.00 0.00 34.99 2.69
2193 2316 6.588719 AGTTTGCATATTAGCTTTGGTCAA 57.411 33.333 0.00 0.00 34.99 3.18
2194 2317 7.695480 TTAGTTTGCATATTAGCTTTGGTCA 57.305 32.000 0.00 0.00 34.99 4.02
2205 2328 9.581099 CCTCCGTTTTTATTTAGTTTGCATATT 57.419 29.630 0.00 0.00 0.00 1.28
2206 2329 8.194769 CCCTCCGTTTTTATTTAGTTTGCATAT 58.805 33.333 0.00 0.00 0.00 1.78
2207 2330 7.393796 TCCCTCCGTTTTTATTTAGTTTGCATA 59.606 33.333 0.00 0.00 0.00 3.14
2208 2331 6.209788 TCCCTCCGTTTTTATTTAGTTTGCAT 59.790 34.615 0.00 0.00 0.00 3.96
2209 2332 5.535406 TCCCTCCGTTTTTATTTAGTTTGCA 59.465 36.000 0.00 0.00 0.00 4.08
2210 2333 6.016213 TCCCTCCGTTTTTATTTAGTTTGC 57.984 37.500 0.00 0.00 0.00 3.68
2211 2334 7.210718 ACTCCCTCCGTTTTTATTTAGTTTG 57.789 36.000 0.00 0.00 0.00 2.93
2212 2335 8.953313 CATACTCCCTCCGTTTTTATTTAGTTT 58.047 33.333 0.00 0.00 0.00 2.66
2213 2336 8.105197 ACATACTCCCTCCGTTTTTATTTAGTT 58.895 33.333 0.00 0.00 0.00 2.24
2214 2337 7.627311 ACATACTCCCTCCGTTTTTATTTAGT 58.373 34.615 0.00 0.00 0.00 2.24
2215 2338 9.774413 ATACATACTCCCTCCGTTTTTATTTAG 57.226 33.333 0.00 0.00 0.00 1.85
2216 2339 9.550406 CATACATACTCCCTCCGTTTTTATTTA 57.450 33.333 0.00 0.00 0.00 1.40
2217 2340 8.050930 ACATACATACTCCCTCCGTTTTTATTT 58.949 33.333 0.00 0.00 0.00 1.40
2218 2341 7.497909 CACATACATACTCCCTCCGTTTTTATT 59.502 37.037 0.00 0.00 0.00 1.40
2219 2342 6.990349 CACATACATACTCCCTCCGTTTTTAT 59.010 38.462 0.00 0.00 0.00 1.40
2220 2343 6.154877 TCACATACATACTCCCTCCGTTTTTA 59.845 38.462 0.00 0.00 0.00 1.52
2221 2344 5.046159 TCACATACATACTCCCTCCGTTTTT 60.046 40.000 0.00 0.00 0.00 1.94
2222 2345 4.468510 TCACATACATACTCCCTCCGTTTT 59.531 41.667 0.00 0.00 0.00 2.43
2223 2346 4.028131 TCACATACATACTCCCTCCGTTT 58.972 43.478 0.00 0.00 0.00 3.60
2224 2347 3.638860 TCACATACATACTCCCTCCGTT 58.361 45.455 0.00 0.00 0.00 4.44
2225 2348 3.308035 TCACATACATACTCCCTCCGT 57.692 47.619 0.00 0.00 0.00 4.69
2226 2349 3.615110 GCATCACATACATACTCCCTCCG 60.615 52.174 0.00 0.00 0.00 4.63
2227 2350 3.324846 TGCATCACATACATACTCCCTCC 59.675 47.826 0.00 0.00 0.00 4.30
2228 2351 4.607293 TGCATCACATACATACTCCCTC 57.393 45.455 0.00 0.00 0.00 4.30
2229 2352 4.164030 TGTTGCATCACATACATACTCCCT 59.836 41.667 0.00 0.00 0.00 4.20
2230 2353 4.450976 TGTTGCATCACATACATACTCCC 58.549 43.478 0.00 0.00 0.00 4.30
2231 2354 5.220854 GGTTGTTGCATCACATACATACTCC 60.221 44.000 0.00 0.00 0.00 3.85
2232 2355 5.353956 TGGTTGTTGCATCACATACATACTC 59.646 40.000 0.00 0.00 0.00 2.59
2233 2356 5.252547 TGGTTGTTGCATCACATACATACT 58.747 37.500 0.00 0.00 0.00 2.12
2234 2357 5.559427 TGGTTGTTGCATCACATACATAC 57.441 39.130 0.00 0.00 0.00 2.39
2250 2373 2.170166 ACATCGCATCCAAATGGTTGT 58.830 42.857 11.17 0.71 37.26 3.32
2265 2388 3.599343 TGGAGGACAAGAATCAACATCG 58.401 45.455 0.00 0.00 0.00 3.84
2268 2391 3.330405 TCCATGGAGGACAAGAATCAACA 59.670 43.478 11.44 0.00 43.07 3.33
2284 2407 4.178540 GCACTGAAAATCACATTCCATGG 58.821 43.478 4.97 4.97 33.60 3.66
2289 2412 4.100529 CCATCGCACTGAAAATCACATTC 58.899 43.478 0.00 0.00 0.00 2.67
2294 2417 1.825090 AGCCATCGCACTGAAAATCA 58.175 45.000 0.00 0.00 37.52 2.57
2295 2418 2.478539 GGAAGCCATCGCACTGAAAATC 60.479 50.000 0.00 0.00 37.52 2.17
2334 2457 2.649034 GTCCTCTTCGTCACCGCA 59.351 61.111 0.00 0.00 0.00 5.69
2337 2460 1.080705 CGTGGTCCTCTTCGTCACC 60.081 63.158 0.00 0.00 0.00 4.02
2514 2637 4.779696 TCACACATGAGCAAGCCATATAA 58.220 39.130 0.00 0.00 0.00 0.98
2615 2739 3.775202 CTCCTTGAACTGACCGTCATAG 58.225 50.000 0.62 0.00 0.00 2.23
2711 2835 3.562935 GTCGTAGATGGGCTCAAACAGC 61.563 54.545 0.00 0.00 44.13 4.40
2738 2862 0.180171 CGTAACCATCAGCCCCATCA 59.820 55.000 0.00 0.00 0.00 3.07
2858 2982 2.191400 TCTGCTGTAGCTGGGATCTTT 58.809 47.619 10.28 0.00 42.66 2.52
2873 2997 5.426689 TGATAGAAGGAACACATTCTGCT 57.573 39.130 7.27 0.00 36.47 4.24
2957 3081 8.267620 ACCAAGGAGATACAAGATAATGATGA 57.732 34.615 0.00 0.00 0.00 2.92
2983 3111 2.540515 AGAACAGATGATACGTTGGCG 58.459 47.619 0.00 0.00 44.93 5.69
3124 3252 1.001974 ACAGCCTCGTATCTTGCAACA 59.998 47.619 0.00 0.00 0.00 3.33
3202 3330 4.074970 CAAAGAAGGATGCTACACTGGTT 58.925 43.478 0.00 0.00 0.00 3.67
3291 3419 1.848652 TGTCTCTACCTTTCCCCTCG 58.151 55.000 0.00 0.00 0.00 4.63
3318 3446 2.623889 CTGCTACTAGGCGACAGGTAAT 59.376 50.000 0.00 0.00 34.52 1.89
3328 3456 7.851387 AATTTAGAAAGTTCTGCTACTAGGC 57.149 36.000 3.76 0.00 38.19 3.93
3357 3485 7.201839 GGGTGGTTGTTAGTCAAAACTTGAATA 60.202 37.037 0.00 0.00 42.15 1.75
3426 3556 6.652481 CAGAGAATTTCTTCAGGTAAAGCTGA 59.348 38.462 7.75 7.75 32.41 4.26
3513 3643 1.290955 CGGGTTCTTCACGCTGGTA 59.709 57.895 0.00 0.00 35.72 3.25
3589 3719 4.201822 ACAAGACGAAAAGAACTTGCTGTC 60.202 41.667 0.00 0.00 39.35 3.51
3601 3731 3.167921 TCCTGACGAACAAGACGAAAA 57.832 42.857 0.00 0.00 34.70 2.29
3614 3744 3.004839 AGTCGGTGATTATGATCCTGACG 59.995 47.826 15.71 7.57 40.28 4.35
3618 3748 4.405680 TGACAAGTCGGTGATTATGATCCT 59.594 41.667 0.00 0.00 0.00 3.24
3684 3816 0.758310 TGAATGTGCAAAGGGTGGCA 60.758 50.000 0.00 0.00 37.77 4.92
3776 3908 1.536284 CCCTCGGCTTCTGATACGTTC 60.536 57.143 0.00 0.00 0.00 3.95
3866 3998 1.078848 CCCCTTGAAGGAGCTCACG 60.079 63.158 13.97 0.00 37.67 4.35
4050 4182 2.094675 ACTGGGAGCATTTCATTTCCG 58.905 47.619 0.00 0.00 0.00 4.30
4232 4368 5.079689 TCCTGTAATCTTGCGAACATACA 57.920 39.130 0.00 0.00 0.00 2.29
4235 4371 4.943705 ACATTCCTGTAATCTTGCGAACAT 59.056 37.500 0.00 0.00 32.49 2.71
4236 4372 4.323417 ACATTCCTGTAATCTTGCGAACA 58.677 39.130 0.00 0.00 32.49 3.18
4237 4373 4.946784 ACATTCCTGTAATCTTGCGAAC 57.053 40.909 0.00 0.00 32.49 3.95
4238 4374 4.155826 CCAACATTCCTGTAATCTTGCGAA 59.844 41.667 0.00 0.00 33.36 4.70
4239 4375 3.689161 CCAACATTCCTGTAATCTTGCGA 59.311 43.478 0.00 0.00 33.36 5.10
4240 4376 3.731867 GCCAACATTCCTGTAATCTTGCG 60.732 47.826 0.00 0.00 33.36 4.85
4241 4377 3.193267 TGCCAACATTCCTGTAATCTTGC 59.807 43.478 0.00 0.00 33.36 4.01
4242 4378 5.047802 AGTTGCCAACATTCCTGTAATCTTG 60.048 40.000 10.69 0.00 33.36 3.02
4243 4379 5.079643 AGTTGCCAACATTCCTGTAATCTT 58.920 37.500 10.69 0.00 33.36 2.40
4244 4380 4.666512 AGTTGCCAACATTCCTGTAATCT 58.333 39.130 10.69 0.00 33.36 2.40
4245 4381 5.391312 AAGTTGCCAACATTCCTGTAATC 57.609 39.130 10.69 0.00 33.36 1.75
4246 4382 5.806654 AAAGTTGCCAACATTCCTGTAAT 57.193 34.783 10.69 0.00 33.36 1.89
4247 4383 5.278758 GCTAAAGTTGCCAACATTCCTGTAA 60.279 40.000 10.69 0.00 33.36 2.41
4248 4384 4.217550 GCTAAAGTTGCCAACATTCCTGTA 59.782 41.667 10.69 0.00 33.36 2.74
4249 4385 3.005791 GCTAAAGTTGCCAACATTCCTGT 59.994 43.478 10.69 0.00 37.12 4.00
4250 4386 3.256631 AGCTAAAGTTGCCAACATTCCTG 59.743 43.478 10.69 0.37 0.00 3.86
4251 4387 3.500343 AGCTAAAGTTGCCAACATTCCT 58.500 40.909 10.69 2.04 0.00 3.36
4252 4388 3.255642 TGAGCTAAAGTTGCCAACATTCC 59.744 43.478 10.69 0.00 0.00 3.01
4253 4389 4.022849 ACTGAGCTAAAGTTGCCAACATTC 60.023 41.667 10.69 0.00 0.00 2.67
4254 4390 3.891366 ACTGAGCTAAAGTTGCCAACATT 59.109 39.130 10.69 6.82 0.00 2.71
4343 4513 6.792326 ACTTTGGCTTCTGTTAAACTGTTAC 58.208 36.000 0.00 0.00 0.00 2.50
4392 4562 7.833786 AGGGCAATTTTCAGCATACATATATG 58.166 34.615 11.29 11.29 41.16 1.78
4399 4569 7.438160 GGTATAAAAGGGCAATTTTCAGCATAC 59.562 37.037 3.31 6.25 34.35 2.39
4401 4571 6.348498 GGTATAAAAGGGCAATTTTCAGCAT 58.652 36.000 3.31 0.00 34.35 3.79
4406 4576 5.006153 AGCGGTATAAAAGGGCAATTTTC 57.994 39.130 3.31 0.00 34.35 2.29
4409 4579 3.380320 GTGAGCGGTATAAAAGGGCAATT 59.620 43.478 0.00 0.00 0.00 2.32
4414 4584 3.869065 TGAAGTGAGCGGTATAAAAGGG 58.131 45.455 0.00 0.00 0.00 3.95
4417 4587 3.932822 TGCTGAAGTGAGCGGTATAAAA 58.067 40.909 0.00 0.00 42.32 1.52
4453 4623 8.932791 GTCCTCGAAGTTATAAAATTTCACTCA 58.067 33.333 0.00 0.00 32.41 3.41
4455 4625 7.064253 CCGTCCTCGAAGTTATAAAATTTCACT 59.936 37.037 0.00 0.00 39.71 3.41
4466 4636 1.749634 CACTCCCGTCCTCGAAGTTAT 59.250 52.381 0.00 0.00 39.71 1.89
4467 4637 1.171308 CACTCCCGTCCTCGAAGTTA 58.829 55.000 0.00 0.00 39.71 2.24
4474 4644 0.108138 CATTCACCACTCCCGTCCTC 60.108 60.000 0.00 0.00 0.00 3.71
4483 4653 6.013725 TGACCTAGTTATTCACATTCACCACT 60.014 38.462 0.00 0.00 0.00 4.00
4484 4654 6.092259 GTGACCTAGTTATTCACATTCACCAC 59.908 42.308 0.00 0.00 39.60 4.16
4485 4655 6.170506 GTGACCTAGTTATTCACATTCACCA 58.829 40.000 0.00 0.00 39.60 4.17
4486 4656 6.170506 TGTGACCTAGTTATTCACATTCACC 58.829 40.000 8.76 0.00 43.63 4.02
4488 4658 7.450074 AGTTGTGACCTAGTTATTCACATTCA 58.550 34.615 12.07 0.00 46.78 2.57
4489 4659 7.907214 AGTTGTGACCTAGTTATTCACATTC 57.093 36.000 12.07 9.59 46.78 2.67
4490 4660 9.959721 ATTAGTTGTGACCTAGTTATTCACATT 57.040 29.630 12.07 8.18 46.78 2.71
4491 4661 9.383519 CATTAGTTGTGACCTAGTTATTCACAT 57.616 33.333 12.07 4.51 46.78 3.21
4492 4662 7.333423 GCATTAGTTGTGACCTAGTTATTCACA 59.667 37.037 8.76 8.76 46.11 3.58
4493 4663 7.549488 AGCATTAGTTGTGACCTAGTTATTCAC 59.451 37.037 0.00 0.00 40.14 3.18
4494 4664 7.620880 AGCATTAGTTGTGACCTAGTTATTCA 58.379 34.615 0.00 0.00 0.00 2.57
4495 4665 9.765795 ATAGCATTAGTTGTGACCTAGTTATTC 57.234 33.333 0.00 0.00 0.00 1.75
4496 4666 9.765795 GATAGCATTAGTTGTGACCTAGTTATT 57.234 33.333 0.00 0.00 0.00 1.40
4497 4667 8.924303 TGATAGCATTAGTTGTGACCTAGTTAT 58.076 33.333 0.00 0.00 0.00 1.89
4498 4668 8.301252 TGATAGCATTAGTTGTGACCTAGTTA 57.699 34.615 0.00 0.00 0.00 2.24
4499 4669 7.182817 TGATAGCATTAGTTGTGACCTAGTT 57.817 36.000 0.00 0.00 0.00 2.24
4500 4670 6.791867 TGATAGCATTAGTTGTGACCTAGT 57.208 37.500 0.00 0.00 0.00 2.57
4501 4671 7.041721 TGTTGATAGCATTAGTTGTGACCTAG 58.958 38.462 0.00 0.00 0.00 3.02
4502 4672 6.941857 TGTTGATAGCATTAGTTGTGACCTA 58.058 36.000 0.00 0.00 0.00 3.08
4503 4673 5.804639 TGTTGATAGCATTAGTTGTGACCT 58.195 37.500 0.00 0.00 0.00 3.85
4504 4674 6.683974 ATGTTGATAGCATTAGTTGTGACC 57.316 37.500 0.00 0.00 0.00 4.02
4505 4675 6.968904 CCAATGTTGATAGCATTAGTTGTGAC 59.031 38.462 0.00 0.00 35.09 3.67
4506 4676 6.658816 ACCAATGTTGATAGCATTAGTTGTGA 59.341 34.615 0.00 0.00 35.09 3.58
4515 4685 3.873361 CGACAGACCAATGTTGATAGCAT 59.127 43.478 0.00 0.00 36.80 3.79
4536 4706 3.305398 AACTGCAGTTAGAGGACTTCG 57.695 47.619 30.25 0.00 36.32 3.79
4576 4746 9.935682 GGTGTCATGTGTTTAAGAATATACATG 57.064 33.333 0.00 0.00 43.96 3.21
4578 4748 9.733556 AAGGTGTCATGTGTTTAAGAATATACA 57.266 29.630 0.00 0.00 0.00 2.29
4596 4766 4.634012 ATAAAGTGTGCCTAAGGTGTCA 57.366 40.909 0.00 0.00 0.00 3.58
4608 4778 4.578516 TCACCACTGTCCAAATAAAGTGTG 59.421 41.667 0.00 0.00 38.68 3.82
4625 4795 6.170506 TGACCTAGTTATTCACATTCACCAC 58.829 40.000 0.00 0.00 0.00 4.16
4629 4799 7.277760 CGACAATGACCTAGTTATTCACATTCA 59.722 37.037 0.00 0.00 0.00 2.57
4632 4802 5.523916 GCGACAATGACCTAGTTATTCACAT 59.476 40.000 0.00 0.00 0.00 3.21
4633 4803 4.868171 GCGACAATGACCTAGTTATTCACA 59.132 41.667 0.00 0.00 0.00 3.58
4634 4804 4.868171 TGCGACAATGACCTAGTTATTCAC 59.132 41.667 0.00 0.00 0.00 3.18
4635 4805 5.079689 TGCGACAATGACCTAGTTATTCA 57.920 39.130 0.00 0.00 0.00 2.57
4636 4806 5.350365 TGTTGCGACAATGACCTAGTTATTC 59.650 40.000 3.66 0.00 31.49 1.75
4637 4807 5.242434 TGTTGCGACAATGACCTAGTTATT 58.758 37.500 3.66 0.00 31.49 1.40
4638 4808 4.827692 TGTTGCGACAATGACCTAGTTAT 58.172 39.130 3.66 0.00 31.49 1.89
4639 4809 4.260139 TGTTGCGACAATGACCTAGTTA 57.740 40.909 3.66 0.00 31.49 2.24
4640 4810 3.120321 TGTTGCGACAATGACCTAGTT 57.880 42.857 3.66 0.00 31.49 2.24
4641 4811 2.831685 TGTTGCGACAATGACCTAGT 57.168 45.000 3.66 0.00 31.49 2.57
4670 4840 7.065504 GGGTCCTCAAATAGAGTACTAGGTTA 58.934 42.308 0.00 0.00 43.12 2.85
4678 4848 7.622081 TGAGTTAATGGGTCCTCAAATAGAGTA 59.378 37.037 0.00 0.00 43.12 2.59
4679 4849 6.443849 TGAGTTAATGGGTCCTCAAATAGAGT 59.556 38.462 0.00 0.00 43.12 3.24
4680 4850 6.889198 TGAGTTAATGGGTCCTCAAATAGAG 58.111 40.000 0.00 0.00 44.31 2.43
4681 4851 6.884472 TGAGTTAATGGGTCCTCAAATAGA 57.116 37.500 0.00 0.00 31.36 1.98
4682 4852 7.282585 TCATGAGTTAATGGGTCCTCAAATAG 58.717 38.462 0.00 0.00 37.48 1.73
4683 4853 7.206789 TCATGAGTTAATGGGTCCTCAAATA 57.793 36.000 0.00 0.00 37.48 1.40
4684 4854 6.078456 TCATGAGTTAATGGGTCCTCAAAT 57.922 37.500 0.00 0.00 37.48 2.32
4685 4855 5.512942 TCATGAGTTAATGGGTCCTCAAA 57.487 39.130 0.00 0.00 37.48 2.69
4718 4908 3.308402 CCTGTCTGGAGGGAATGCTTTAA 60.308 47.826 0.00 0.00 38.35 1.52
4732 4922 5.878406 ACCTGACTTATATTCCTGTCTGG 57.122 43.478 13.64 13.64 46.74 3.86
4754 4944 8.938906 GTTAAATGGACGACCTAAAATCAAGTA 58.061 33.333 5.33 0.00 37.04 2.24
4794 4984 6.511121 CGATTGGTTAGTGTGTGGCATATTAC 60.511 42.308 0.00 0.00 0.00 1.89
4809 5039 5.008712 GGGCCTTAGATTTTCGATTGGTTAG 59.991 44.000 0.84 0.00 0.00 2.34
4834 5064 1.416243 TGGGAATATAAGTCGGGCGT 58.584 50.000 0.00 0.00 0.00 5.68
4867 5097 4.072839 TCAGCGATGGAGTTCGATAGTAT 58.927 43.478 0.00 0.00 41.62 2.12
4887 5117 6.432472 TGTGTATATTGTTGAATGGCAGTTCA 59.568 34.615 7.85 7.85 36.38 3.18
4888 5118 6.747280 GTGTGTATATTGTTGAATGGCAGTTC 59.253 38.462 0.00 0.00 0.00 3.01
4942 5172 4.509970 CCGACTTGTGTGTACTGAAATCAA 59.490 41.667 0.00 0.00 0.00 2.57
4949 5179 2.662700 GAGACCGACTTGTGTGTACTG 58.337 52.381 0.00 0.00 0.00 2.74
4958 5188 0.516001 TCGTTCTCGAGACCGACTTG 59.484 55.000 28.22 7.49 41.35 3.16
4980 5210 3.629398 AGTTCTTTGCTGTCTGAAACCTG 59.371 43.478 0.00 0.00 0.00 4.00
4993 5223 8.333186 CCTGTAAATAATACCGTAGTTCTTTGC 58.667 37.037 0.00 0.00 0.00 3.68
5047 5277 4.249661 GCTGAAGAGTCTGTAAAGGGAAG 58.750 47.826 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.