Multiple sequence alignment - TraesCS3B01G473700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G473700 | chr3B | 100.000 | 5124 | 0 | 0 | 1 | 5124 | 723027051 | 723032174 | 0.000000e+00 | 9463.0 |
1 | TraesCS3B01G473700 | chr3A | 89.673 | 2508 | 183 | 34 | 1 | 2460 | 682971180 | 682973659 | 0.000000e+00 | 3127.0 |
2 | TraesCS3B01G473700 | chr3A | 92.835 | 1312 | 67 | 10 | 2541 | 3840 | 682973639 | 682974935 | 0.000000e+00 | 1877.0 |
3 | TraesCS3B01G473700 | chr3A | 91.153 | 633 | 41 | 14 | 4504 | 5124 | 682976047 | 682976676 | 0.000000e+00 | 845.0 |
4 | TraesCS3B01G473700 | chr3A | 95.714 | 70 | 3 | 0 | 2477 | 2546 | 565776370 | 565776439 | 4.190000e-21 | 113.0 |
5 | TraesCS3B01G473700 | chr3D | 94.777 | 1570 | 69 | 11 | 901 | 2460 | 546244875 | 546246441 | 0.000000e+00 | 2433.0 |
6 | TraesCS3B01G473700 | chr3D | 93.924 | 1547 | 72 | 9 | 2550 | 4090 | 546246430 | 546247960 | 0.000000e+00 | 2316.0 |
7 | TraesCS3B01G473700 | chr3D | 88.286 | 1050 | 72 | 21 | 4085 | 5124 | 546247995 | 546249003 | 0.000000e+00 | 1210.0 |
8 | TraesCS3B01G473700 | chr3D | 85.523 | 898 | 95 | 24 | 1 | 868 | 546243996 | 546244888 | 0.000000e+00 | 905.0 |
9 | TraesCS3B01G473700 | chr3D | 98.462 | 65 | 1 | 0 | 2482 | 2546 | 549228541 | 549228477 | 1.170000e-21 | 115.0 |
10 | TraesCS3B01G473700 | chr4D | 91.111 | 90 | 5 | 2 | 4265 | 4352 | 241215298 | 241215210 | 9.010000e-23 | 119.0 |
11 | TraesCS3B01G473700 | chr2A | 97.143 | 70 | 1 | 1 | 2477 | 2546 | 691479343 | 691479411 | 3.240000e-22 | 117.0 |
12 | TraesCS3B01G473700 | chr2A | 98.462 | 65 | 1 | 0 | 2482 | 2546 | 456488471 | 456488407 | 1.170000e-21 | 115.0 |
13 | TraesCS3B01G473700 | chr5A | 94.667 | 75 | 2 | 1 | 4265 | 4337 | 647044724 | 647044650 | 1.170000e-21 | 115.0 |
14 | TraesCS3B01G473700 | chr5A | 94.444 | 72 | 1 | 2 | 2475 | 2546 | 393879859 | 393879791 | 1.950000e-19 | 108.0 |
15 | TraesCS3B01G473700 | chr6B | 95.775 | 71 | 1 | 1 | 2476 | 2546 | 637123409 | 637123341 | 4.190000e-21 | 113.0 |
16 | TraesCS3B01G473700 | chr6B | 95.588 | 68 | 3 | 0 | 2479 | 2546 | 504878393 | 504878326 | 5.420000e-20 | 110.0 |
17 | TraesCS3B01G473700 | chr5B | 95.652 | 69 | 3 | 0 | 2478 | 2546 | 209646210 | 209646278 | 1.510000e-20 | 111.0 |
18 | TraesCS3B01G473700 | chr1A | 93.421 | 76 | 4 | 1 | 2472 | 2546 | 33221315 | 33221240 | 1.510000e-20 | 111.0 |
19 | TraesCS3B01G473700 | chrUn | 93.333 | 75 | 3 | 1 | 4265 | 4337 | 86448597 | 86448671 | 5.420000e-20 | 110.0 |
20 | TraesCS3B01G473700 | chrUn | 93.333 | 75 | 3 | 1 | 4265 | 4337 | 86454597 | 86454671 | 5.420000e-20 | 110.0 |
21 | TraesCS3B01G473700 | chrUn | 93.333 | 75 | 3 | 1 | 4265 | 4337 | 222680680 | 222680606 | 5.420000e-20 | 110.0 |
22 | TraesCS3B01G473700 | chrUn | 93.333 | 75 | 3 | 1 | 4265 | 4337 | 358547246 | 358547320 | 5.420000e-20 | 110.0 |
23 | TraesCS3B01G473700 | chrUn | 93.333 | 75 | 3 | 1 | 4265 | 4337 | 417500220 | 417500146 | 5.420000e-20 | 110.0 |
24 | TraesCS3B01G473700 | chrUn | 93.333 | 75 | 3 | 1 | 4265 | 4337 | 427277248 | 427277322 | 5.420000e-20 | 110.0 |
25 | TraesCS3B01G473700 | chr5D | 100.000 | 28 | 0 | 0 | 1205 | 1232 | 394988550 | 394988523 | 9.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G473700 | chr3B | 723027051 | 723032174 | 5123 | False | 9463.000000 | 9463 | 100.000000 | 1 | 5124 | 1 | chr3B.!!$F1 | 5123 |
1 | TraesCS3B01G473700 | chr3A | 682971180 | 682976676 | 5496 | False | 1949.666667 | 3127 | 91.220333 | 1 | 5124 | 3 | chr3A.!!$F2 | 5123 |
2 | TraesCS3B01G473700 | chr3D | 546243996 | 546249003 | 5007 | False | 1716.000000 | 2433 | 90.627500 | 1 | 5124 | 4 | chr3D.!!$F1 | 5123 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
570 | 598 | 0.179097 | GAGCCGCGATTTCTTCCTCT | 60.179 | 55.0 | 8.23 | 0.0 | 0.00 | 3.69 | F |
1609 | 1651 | 0.179205 | CGACGAACGTCCTAGGTGAC | 60.179 | 60.0 | 19.15 | 0.0 | 41.76 | 3.67 | F |
1661 | 1705 | 0.528684 | GCACTGAGACATAGCGGGTC | 60.529 | 60.0 | 0.00 | 0.0 | 35.50 | 4.46 | F |
2247 | 2297 | 0.964358 | GCTGCTGCCTTTCCACAGAT | 60.964 | 55.0 | 3.85 | 0.0 | 35.90 | 2.90 | F |
3539 | 3595 | 0.603439 | TGCTTGCTCATCGTGCAGAA | 60.603 | 50.0 | 0.00 | 0.0 | 41.71 | 3.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2524 | 2575 | 0.103876 | ATAATCCCTCCCCAGACCCC | 60.104 | 60.0 | 0.00 | 0.00 | 0.00 | 4.95 | R |
3034 | 3090 | 0.464735 | GCCTAGAGTCGAGCCTCTGA | 60.465 | 60.0 | 14.17 | 0.80 | 41.81 | 3.27 | R |
3124 | 3180 | 5.010282 | ACAAGGTGAAAAGTTTCAGACAGT | 58.990 | 37.5 | 6.72 | 2.31 | 46.80 | 3.55 | R |
3731 | 3794 | 0.449388 | GCAGAACTCCATTTCCTGCG | 59.551 | 55.0 | 0.00 | 0.00 | 0.00 | 5.18 | R |
4842 | 5457 | 0.182299 | CTGGCTCTCCCCTTCCATTC | 59.818 | 60.0 | 0.00 | 0.00 | 0.00 | 2.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
35 | 36 | 1.628846 | TGGGCTAGGTCCAAGAAAGAC | 59.371 | 52.381 | 0.00 | 0.00 | 32.75 | 3.01 |
36 | 37 | 1.628846 | GGGCTAGGTCCAAGAAAGACA | 59.371 | 52.381 | 0.00 | 0.00 | 35.89 | 3.41 |
47 | 49 | 2.763249 | AGAAAGACAAGCAAGCAACG | 57.237 | 45.000 | 0.00 | 0.00 | 0.00 | 4.10 |
69 | 71 | 4.626172 | CGACAGGAAGCTAAGGTCTAAAAC | 59.374 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
74 | 76 | 5.932883 | AGGAAGCTAAGGTCTAAAACTTTCG | 59.067 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
75 | 77 | 5.699915 | GGAAGCTAAGGTCTAAAACTTTCGT | 59.300 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
98 | 101 | 4.821260 | TGAATTAGCTCAGAGTGTGCAAAA | 59.179 | 37.500 | 0.00 | 0.00 | 39.15 | 2.44 |
165 | 168 | 2.524569 | TGCATTCACAGTCGAGTCAA | 57.475 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
234 | 237 | 1.212688 | ACATTGGCCGAAGATCCATGA | 59.787 | 47.619 | 1.21 | 0.00 | 30.93 | 3.07 |
238 | 241 | 1.004161 | TGGCCGAAGATCCATGAAACA | 59.996 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
244 | 247 | 5.504665 | GCCGAAGATCCATGAAACAAGTATG | 60.505 | 44.000 | 0.00 | 0.00 | 0.00 | 2.39 |
248 | 251 | 6.668541 | AGATCCATGAAACAAGTATGAACG | 57.331 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
265 | 268 | 0.389426 | ACGCTTGCGAGAAACCGTAT | 60.389 | 50.000 | 22.03 | 0.00 | 0.00 | 3.06 |
335 | 338 | 7.560991 | ACCATGAATCAGATAATGCCTTTAACA | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
346 | 349 | 6.902224 | AATGCCTTTAACAAACACTTTGAC | 57.098 | 33.333 | 1.75 | 0.00 | 43.26 | 3.18 |
357 | 360 | 5.815222 | ACAAACACTTTGACAAATTAAGGGC | 59.185 | 36.000 | 0.05 | 0.00 | 43.26 | 5.19 |
358 | 361 | 5.606348 | AACACTTTGACAAATTAAGGGCA | 57.394 | 34.783 | 0.05 | 0.00 | 0.00 | 5.36 |
359 | 362 | 5.200368 | ACACTTTGACAAATTAAGGGCAG | 57.800 | 39.130 | 0.05 | 0.00 | 0.00 | 4.85 |
381 | 384 | 4.082571 | AGCTTGTTTTGTGATGACTATGGC | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
428 | 456 | 3.699411 | TTTGGTAGGCCGCTACTTTTA | 57.301 | 42.857 | 0.00 | 0.00 | 37.67 | 1.52 |
433 | 461 | 1.935933 | AGGCCGCTACTTTTACATCG | 58.064 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
449 | 477 | 2.292016 | ACATCGGTCAATTTGTTGCGAA | 59.708 | 40.909 | 0.00 | 0.00 | 0.00 | 4.70 |
531 | 559 | 5.312079 | CCCTCAAACTGTTCATCTTCTTCT | 58.688 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
537 | 565 | 8.210946 | TCAAACTGTTCATCTTCTTCTTCCTAA | 58.789 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
544 | 572 | 6.467677 | TCATCTTCTTCTTCCTAACCAACAG | 58.532 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
556 | 584 | 1.722011 | ACCAACAGAAATACGAGCCG | 58.278 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
570 | 598 | 0.179097 | GAGCCGCGATTTCTTCCTCT | 60.179 | 55.000 | 8.23 | 0.00 | 0.00 | 3.69 |
605 | 633 | 0.970937 | CTCCTACCTCGCCTCCAACA | 60.971 | 60.000 | 0.00 | 0.00 | 0.00 | 3.33 |
614 | 642 | 2.626780 | GCCTCCAACAAGTTCCCGC | 61.627 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
618 | 646 | 4.038080 | CAACAAGTTCCCGCCCGC | 62.038 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
661 | 690 | 1.532316 | TTCCGTCTCCAACTCGGGT | 60.532 | 57.895 | 0.00 | 0.00 | 43.75 | 5.28 |
672 | 701 | 1.877443 | CAACTCGGGTTTCGTCCAATT | 59.123 | 47.619 | 0.00 | 0.00 | 40.32 | 2.32 |
673 | 702 | 2.265589 | ACTCGGGTTTCGTCCAATTT | 57.734 | 45.000 | 0.00 | 0.00 | 40.32 | 1.82 |
678 | 707 | 2.414957 | CGGGTTTCGTCCAATTTAAGCC | 60.415 | 50.000 | 0.00 | 0.00 | 34.04 | 4.35 |
714 | 744 | 2.773527 | CCCCCTCCCAACCACACAA | 61.774 | 63.158 | 0.00 | 0.00 | 0.00 | 3.33 |
726 | 756 | 0.881118 | CCACACAATCAAACCTCCGG | 59.119 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
729 | 759 | 1.247567 | CACAATCAAACCTCCGGCTT | 58.752 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
766 | 796 | 4.907034 | CGTCGTCGATGGCTCCGG | 62.907 | 72.222 | 7.77 | 0.00 | 39.71 | 5.14 |
770 | 800 | 3.838271 | GTCGATGGCTCCGGCTCA | 61.838 | 66.667 | 0.00 | 0.00 | 38.73 | 4.26 |
786 | 816 | 1.943507 | GCTCAGGTGTTGCTTCTCCTC | 60.944 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
794 | 824 | 2.079925 | GTTGCTTCTCCTCTGCGAAAT | 58.920 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
812 | 842 | 2.154854 | ATATCGACTGGCGTGAATGG | 57.845 | 50.000 | 1.46 | 0.00 | 41.80 | 3.16 |
814 | 844 | 2.593468 | ATCGACTGGCGTGAATGGGG | 62.593 | 60.000 | 1.46 | 0.00 | 41.80 | 4.96 |
826 | 856 | 3.554752 | CGTGAATGGGGTTTTCAAGCAAT | 60.555 | 43.478 | 0.00 | 0.00 | 35.03 | 3.56 |
830 | 860 | 2.402564 | TGGGGTTTTCAAGCAATTGGA | 58.597 | 42.857 | 7.72 | 0.00 | 0.00 | 3.53 |
836 | 866 | 4.632688 | GGTTTTCAAGCAATTGGATGATGG | 59.367 | 41.667 | 7.72 | 0.00 | 0.00 | 3.51 |
854 | 884 | 1.967066 | TGGTGAATGGCAAAACCGAAT | 59.033 | 42.857 | 10.77 | 0.00 | 43.94 | 3.34 |
910 | 941 | 6.070653 | TCCTGCAGAGCATTCCAATTTTATTT | 60.071 | 34.615 | 17.39 | 0.00 | 38.13 | 1.40 |
993 | 1024 | 9.099454 | CACTAGAATATTTACCAACTTGGACTC | 57.901 | 37.037 | 15.14 | 0.00 | 40.96 | 3.36 |
1465 | 1499 | 0.316841 | GGATCAGCTCATCCTCCGAC | 59.683 | 60.000 | 9.80 | 0.00 | 39.59 | 4.79 |
1551 | 1593 | 1.068250 | CTCCCTTGCTAGTAGCCGC | 59.932 | 63.158 | 19.41 | 0.00 | 41.51 | 6.53 |
1609 | 1651 | 0.179205 | CGACGAACGTCCTAGGTGAC | 60.179 | 60.000 | 19.15 | 0.00 | 41.76 | 3.67 |
1612 | 1654 | 0.879765 | CGAACGTCCTAGGTGACAGT | 59.120 | 55.000 | 9.08 | 0.94 | 34.88 | 3.55 |
1613 | 1655 | 2.079158 | CGAACGTCCTAGGTGACAGTA | 58.921 | 52.381 | 9.08 | 0.00 | 34.88 | 2.74 |
1645 | 1689 | 5.349543 | GGAATCAAAATGATGAAACTGGCAC | 59.650 | 40.000 | 0.00 | 0.00 | 37.15 | 5.01 |
1652 | 1696 | 2.104622 | TGATGAAACTGGCACTGAGACA | 59.895 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1661 | 1705 | 0.528684 | GCACTGAGACATAGCGGGTC | 60.529 | 60.000 | 0.00 | 0.00 | 35.50 | 4.46 |
1668 | 1712 | 1.152525 | ACATAGCGGGTCCCTCGAT | 60.153 | 57.895 | 6.29 | 0.00 | 0.00 | 3.59 |
1673 | 1717 | 3.147595 | CGGGTCCCTCGATGCAGA | 61.148 | 66.667 | 6.29 | 0.00 | 0.00 | 4.26 |
1816 | 1864 | 4.212214 | CAGTCACTTGGAACTAACAAGAGC | 59.788 | 45.833 | 11.65 | 1.88 | 46.27 | 4.09 |
1817 | 1865 | 4.127171 | GTCACTTGGAACTAACAAGAGCA | 58.873 | 43.478 | 11.65 | 0.00 | 46.27 | 4.26 |
1841 | 1889 | 2.799126 | TTGACCATTGCCCGTCTATT | 57.201 | 45.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1843 | 1891 | 4.431416 | TTGACCATTGCCCGTCTATTAT | 57.569 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
1847 | 1895 | 5.654650 | TGACCATTGCCCGTCTATTATTTTT | 59.345 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
1852 | 1900 | 6.439675 | TTGCCCGTCTATTATTTTTACACC | 57.560 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
1881 | 1929 | 5.474189 | CCTGCCAATGATTTTGATTTTGGTT | 59.526 | 36.000 | 0.00 | 0.00 | 39.21 | 3.67 |
2157 | 2207 | 4.211164 | TGATGACACTTAAGTTTGTCTGCG | 59.789 | 41.667 | 20.67 | 5.95 | 42.31 | 5.18 |
2223 | 2273 | 1.216064 | TCCAGTGAATCATGGGAGGG | 58.784 | 55.000 | 10.35 | 0.00 | 37.19 | 4.30 |
2247 | 2297 | 0.964358 | GCTGCTGCCTTTCCACAGAT | 60.964 | 55.000 | 3.85 | 0.00 | 35.90 | 2.90 |
2289 | 2339 | 9.442047 | GTTCATCCAAATAATCCTGTCTATAGG | 57.558 | 37.037 | 0.00 | 0.00 | 39.29 | 2.57 |
2316 | 2366 | 4.584325 | TGCATATCCCTAAGGCATTTGTTC | 59.416 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2319 | 2369 | 3.085952 | TCCCTAAGGCATTTGTTCCAG | 57.914 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
2375 | 2425 | 6.127535 | ACTCCATGAATTTTCCAGTATGCAAG | 60.128 | 38.462 | 0.00 | 0.00 | 31.97 | 4.01 |
2394 | 2444 | 4.261741 | GCAAGATGCAACCACTTATATGGG | 60.262 | 45.833 | 0.00 | 0.00 | 43.05 | 4.00 |
2398 | 2448 | 6.852404 | AGATGCAACCACTTATATGGGTATT | 58.148 | 36.000 | 0.00 | 0.00 | 44.81 | 1.89 |
2468 | 2519 | 8.777578 | AGTAGTATGTTGATCTATACCACCAA | 57.222 | 34.615 | 0.00 | 0.00 | 31.65 | 3.67 |
2469 | 2520 | 9.209048 | AGTAGTATGTTGATCTATACCACCAAA | 57.791 | 33.333 | 0.00 | 0.00 | 31.65 | 3.28 |
2470 | 2521 | 9.826574 | GTAGTATGTTGATCTATACCACCAAAA | 57.173 | 33.333 | 0.00 | 0.00 | 31.65 | 2.44 |
2496 | 2547 | 8.463930 | AAAATGTTGATCTAAAAGGACAGACA | 57.536 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
2497 | 2548 | 7.440523 | AATGTTGATCTAAAAGGACAGACAC | 57.559 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2498 | 2549 | 5.924356 | TGTTGATCTAAAAGGACAGACACA | 58.076 | 37.500 | 0.00 | 0.00 | 0.00 | 3.72 |
2499 | 2550 | 5.991606 | TGTTGATCTAAAAGGACAGACACAG | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2500 | 2551 | 5.808366 | TGATCTAAAAGGACAGACACAGT | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
2501 | 2552 | 5.541845 | TGATCTAAAAGGACAGACACAGTG | 58.458 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
2502 | 2553 | 3.728845 | TCTAAAAGGACAGACACAGTGC | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2503 | 2554 | 2.418368 | AAAAGGACAGACACAGTGCA | 57.582 | 45.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2504 | 2555 | 2.645838 | AAAGGACAGACACAGTGCAT | 57.354 | 45.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2505 | 2556 | 3.769739 | AAAGGACAGACACAGTGCATA | 57.230 | 42.857 | 0.00 | 0.00 | 0.00 | 3.14 |
2506 | 2557 | 3.325293 | AAGGACAGACACAGTGCATAG | 57.675 | 47.619 | 0.00 | 0.00 | 0.00 | 2.23 |
2507 | 2558 | 2.529632 | AGGACAGACACAGTGCATAGA | 58.470 | 47.619 | 0.00 | 0.00 | 0.00 | 1.98 |
2508 | 2559 | 2.899900 | AGGACAGACACAGTGCATAGAA | 59.100 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
2509 | 2560 | 3.056250 | AGGACAGACACAGTGCATAGAAG | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
2510 | 2561 | 2.670414 | GACAGACACAGTGCATAGAAGC | 59.330 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2511 | 2562 | 2.301296 | ACAGACACAGTGCATAGAAGCT | 59.699 | 45.455 | 0.00 | 0.00 | 34.99 | 3.74 |
2512 | 2563 | 2.928757 | CAGACACAGTGCATAGAAGCTC | 59.071 | 50.000 | 0.00 | 0.00 | 34.99 | 4.09 |
2513 | 2564 | 2.093764 | AGACACAGTGCATAGAAGCTCC | 60.094 | 50.000 | 0.00 | 0.00 | 34.99 | 4.70 |
2514 | 2565 | 1.065854 | ACACAGTGCATAGAAGCTCCC | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 4.30 |
2515 | 2566 | 1.065926 | CACAGTGCATAGAAGCTCCCA | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 4.37 |
2516 | 2567 | 1.065854 | ACAGTGCATAGAAGCTCCCAC | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 4.61 |
2517 | 2568 | 1.065926 | CAGTGCATAGAAGCTCCCACA | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 4.17 |
2518 | 2569 | 1.065854 | AGTGCATAGAAGCTCCCACAC | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 3.82 |
2519 | 2570 | 0.983467 | TGCATAGAAGCTCCCACACA | 59.017 | 50.000 | 0.00 | 0.00 | 34.99 | 3.72 |
2520 | 2571 | 1.350684 | TGCATAGAAGCTCCCACACAA | 59.649 | 47.619 | 0.00 | 0.00 | 34.99 | 3.33 |
2521 | 2572 | 2.012673 | GCATAGAAGCTCCCACACAAG | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2522 | 2573 | 2.636830 | CATAGAAGCTCCCACACAAGG | 58.363 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
2523 | 2574 | 1.729586 | TAGAAGCTCCCACACAAGGT | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2531 | 2582 | 4.481195 | CACACAAGGTGGGGTCTG | 57.519 | 61.111 | 1.07 | 0.00 | 44.04 | 3.51 |
2532 | 2583 | 1.228245 | CACACAAGGTGGGGTCTGG | 60.228 | 63.158 | 1.07 | 0.00 | 44.04 | 3.86 |
2533 | 2584 | 2.436109 | CACAAGGTGGGGTCTGGG | 59.564 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2534 | 2585 | 2.858974 | ACAAGGTGGGGTCTGGGG | 60.859 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
2535 | 2586 | 2.531685 | CAAGGTGGGGTCTGGGGA | 60.532 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
2536 | 2587 | 2.204151 | AAGGTGGGGTCTGGGGAG | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2537 | 2588 | 3.891432 | AAGGTGGGGTCTGGGGAGG | 62.891 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
2539 | 2590 | 4.348495 | GTGGGGTCTGGGGAGGGA | 62.348 | 72.222 | 0.00 | 0.00 | 0.00 | 4.20 |
2544 | 2595 | 1.153565 | GGGGTCTGGGGAGGGATTATA | 59.846 | 57.143 | 0.00 | 0.00 | 0.00 | 0.98 |
2553 | 2604 | 4.104831 | GGGGAGGGATTATAGTAGCATGT | 58.895 | 47.826 | 0.00 | 0.00 | 0.00 | 3.21 |
2557 | 2608 | 6.166982 | GGAGGGATTATAGTAGCATGTTGAC | 58.833 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2603 | 2654 | 9.740239 | CTGCTATGTTGATTACATGCTATTTTT | 57.260 | 29.630 | 0.00 | 0.00 | 46.81 | 1.94 |
2608 | 2659 | 8.870160 | TGTTGATTACATGCTATTTTTATGGC | 57.130 | 30.769 | 0.00 | 0.00 | 0.00 | 4.40 |
2609 | 2660 | 8.473219 | TGTTGATTACATGCTATTTTTATGGCA | 58.527 | 29.630 | 0.00 | 0.00 | 42.13 | 4.92 |
2610 | 2661 | 9.311916 | GTTGATTACATGCTATTTTTATGGCAA | 57.688 | 29.630 | 0.00 | 0.00 | 41.28 | 4.52 |
2707 | 2759 | 9.838339 | TTGTTGGACAAAAATATAACACCAATT | 57.162 | 25.926 | 0.00 | 0.00 | 34.76 | 2.32 |
2759 | 2811 | 5.659440 | TTTATGGAAGGCAAAAGATGGTC | 57.341 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2760 | 2812 | 1.923356 | TGGAAGGCAAAAGATGGTCC | 58.077 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2761 | 2813 | 1.146774 | TGGAAGGCAAAAGATGGTCCA | 59.853 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2762 | 2814 | 1.821136 | GGAAGGCAAAAGATGGTCCAG | 59.179 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2763 | 2815 | 2.555227 | GGAAGGCAAAAGATGGTCCAGA | 60.555 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2764 | 2816 | 2.503895 | AGGCAAAAGATGGTCCAGAG | 57.496 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2765 | 2817 | 1.707427 | AGGCAAAAGATGGTCCAGAGT | 59.293 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
2766 | 2818 | 2.087646 | GGCAAAAGATGGTCCAGAGTC | 58.912 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2767 | 2819 | 2.087646 | GCAAAAGATGGTCCAGAGTCC | 58.912 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2781 | 2833 | 3.054728 | CCAGAGTCCAGACTAGAGAGACA | 60.055 | 52.174 | 0.00 | 0.00 | 42.66 | 3.41 |
2799 | 2851 | 5.704515 | AGAGACAATTGACCTGTTCTTGATG | 59.295 | 40.000 | 13.59 | 0.00 | 0.00 | 3.07 |
2833 | 2888 | 6.871844 | TGATCTTTTGATTGTGTTCAACCAA | 58.128 | 32.000 | 0.00 | 0.00 | 39.67 | 3.67 |
2890 | 2945 | 4.322198 | GGGCAGATTCATTGCAAAGAGAAA | 60.322 | 41.667 | 1.71 | 0.00 | 43.28 | 2.52 |
3034 | 3090 | 5.760253 | GTCCATGTAGTATACTGCAGCATTT | 59.240 | 40.000 | 24.87 | 8.65 | 43.54 | 2.32 |
3460 | 3516 | 4.887655 | CCTACTTGTCTGGAAGGTTTGTTT | 59.112 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
3475 | 3531 | 5.062809 | AGGTTTGTTTGCACGTGTTTTTATG | 59.937 | 36.000 | 18.38 | 0.00 | 0.00 | 1.90 |
3477 | 3533 | 6.034683 | GGTTTGTTTGCACGTGTTTTTATGTA | 59.965 | 34.615 | 18.38 | 0.00 | 0.00 | 2.29 |
3486 | 3542 | 8.343366 | TGCACGTGTTTTTATGTAAATACAGAA | 58.657 | 29.630 | 18.38 | 0.00 | 37.64 | 3.02 |
3539 | 3595 | 0.603439 | TGCTTGCTCATCGTGCAGAA | 60.603 | 50.000 | 0.00 | 0.00 | 41.71 | 3.02 |
3635 | 3691 | 4.379243 | AGAAGCGACACCTGCCCG | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
3669 | 3725 | 1.950007 | CGATATCTCGTGCTCCCGT | 59.050 | 57.895 | 0.34 | 0.00 | 40.07 | 5.28 |
3715 | 3778 | 1.572085 | CTGCAAGCCTGACAACTCCG | 61.572 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3731 | 3794 | 2.208431 | CTCCGACAATCTGCTGGAATC | 58.792 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
3804 | 3867 | 2.012673 | CATCAGGAAGAGCGGGAAAAG | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 2.27 |
3845 | 3908 | 4.249661 | GCTGAAGAGTCTGTAAAGGGAAG | 58.750 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
3912 | 3975 | 3.629398 | AGTTCTTTGCTGTCTGAAACCTG | 59.371 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
3934 | 4000 | 0.516001 | TCGTTCTCGAGACCGACTTG | 59.484 | 55.000 | 28.22 | 7.49 | 41.35 | 3.16 |
3943 | 4009 | 2.662700 | GAGACCGACTTGTGTGTACTG | 58.337 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
3950 | 4016 | 4.509970 | CCGACTTGTGTGTACTGAAATCAA | 59.490 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4025 | 4091 | 4.072839 | TCAGCGATGGAGTTCGATAGTAT | 58.927 | 43.478 | 0.00 | 0.00 | 41.62 | 2.12 |
4205 | 4344 | 4.288366 | TGTTCATGAGTTAATGGGTCCTCA | 59.712 | 41.667 | 0.00 | 0.00 | 38.24 | 3.86 |
4206 | 4345 | 5.222027 | TGTTCATGAGTTAATGGGTCCTCAA | 60.222 | 40.000 | 0.00 | 0.00 | 37.48 | 3.02 |
4207 | 4346 | 5.512942 | TCATGAGTTAATGGGTCCTCAAA | 57.487 | 39.130 | 0.00 | 0.00 | 37.48 | 2.69 |
4208 | 4347 | 6.078456 | TCATGAGTTAATGGGTCCTCAAAT | 57.922 | 37.500 | 0.00 | 0.00 | 37.48 | 2.32 |
4209 | 4348 | 7.206789 | TCATGAGTTAATGGGTCCTCAAATA | 57.793 | 36.000 | 0.00 | 0.00 | 37.48 | 1.40 |
4222 | 4539 | 7.065504 | GGGTCCTCAAATAGAGTACTAGGTTA | 58.934 | 42.308 | 0.00 | 0.00 | 43.12 | 2.85 |
4251 | 4568 | 2.831685 | TGTTGCGACAATGACCTAGT | 57.168 | 45.000 | 3.66 | 0.00 | 31.49 | 2.57 |
4252 | 4569 | 3.120321 | TGTTGCGACAATGACCTAGTT | 57.880 | 42.857 | 3.66 | 0.00 | 31.49 | 2.24 |
4253 | 4570 | 4.260139 | TGTTGCGACAATGACCTAGTTA | 57.740 | 40.909 | 3.66 | 0.00 | 31.49 | 2.24 |
4377 | 4749 | 3.873361 | CGACAGACCAATGTTGATAGCAT | 59.127 | 43.478 | 0.00 | 0.00 | 36.80 | 3.79 |
4386 | 4758 | 6.658816 | ACCAATGTTGATAGCATTAGTTGTGA | 59.341 | 34.615 | 0.00 | 0.00 | 35.09 | 3.58 |
4387 | 4759 | 6.968904 | CCAATGTTGATAGCATTAGTTGTGAC | 59.031 | 38.462 | 0.00 | 0.00 | 35.09 | 3.67 |
4389 | 4761 | 5.804639 | TGTTGATAGCATTAGTTGTGACCT | 58.195 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
4390 | 4762 | 6.941857 | TGTTGATAGCATTAGTTGTGACCTA | 58.058 | 36.000 | 0.00 | 0.00 | 0.00 | 3.08 |
4391 | 4763 | 7.041721 | TGTTGATAGCATTAGTTGTGACCTAG | 58.958 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
4392 | 4764 | 6.791867 | TGATAGCATTAGTTGTGACCTAGT | 57.208 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
4393 | 4765 | 7.182817 | TGATAGCATTAGTTGTGACCTAGTT | 57.817 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4394 | 4766 | 8.301252 | TGATAGCATTAGTTGTGACCTAGTTA | 57.699 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4395 | 4767 | 8.924303 | TGATAGCATTAGTTGTGACCTAGTTAT | 58.076 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
4396 | 4768 | 9.765795 | GATAGCATTAGTTGTGACCTAGTTATT | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
4397 | 4769 | 9.765795 | ATAGCATTAGTTGTGACCTAGTTATTC | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
4398 | 4770 | 7.620880 | AGCATTAGTTGTGACCTAGTTATTCA | 58.379 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4399 | 4771 | 7.549488 | AGCATTAGTTGTGACCTAGTTATTCAC | 59.451 | 37.037 | 0.00 | 0.00 | 40.14 | 3.18 |
4400 | 4772 | 7.333423 | GCATTAGTTGTGACCTAGTTATTCACA | 59.667 | 37.037 | 8.76 | 8.76 | 46.11 | 3.58 |
4401 | 4773 | 9.383519 | CATTAGTTGTGACCTAGTTATTCACAT | 57.616 | 33.333 | 12.07 | 4.51 | 46.78 | 3.21 |
4402 | 4774 | 9.959721 | ATTAGTTGTGACCTAGTTATTCACATT | 57.040 | 29.630 | 12.07 | 8.18 | 46.78 | 2.71 |
4403 | 4775 | 7.907214 | AGTTGTGACCTAGTTATTCACATTC | 57.093 | 36.000 | 12.07 | 9.59 | 46.78 | 2.67 |
4404 | 4776 | 7.450074 | AGTTGTGACCTAGTTATTCACATTCA | 58.550 | 34.615 | 12.07 | 0.00 | 46.78 | 2.57 |
4405 | 4777 | 7.387948 | AGTTGTGACCTAGTTATTCACATTCAC | 59.612 | 37.037 | 12.07 | 9.00 | 46.78 | 3.18 |
4406 | 4778 | 6.170506 | TGTGACCTAGTTATTCACATTCACC | 58.829 | 40.000 | 8.76 | 0.00 | 43.63 | 4.02 |
4407 | 4779 | 6.170506 | GTGACCTAGTTATTCACATTCACCA | 58.829 | 40.000 | 0.00 | 0.00 | 39.60 | 4.17 |
4408 | 4780 | 6.092259 | GTGACCTAGTTATTCACATTCACCAC | 59.908 | 42.308 | 0.00 | 0.00 | 39.60 | 4.16 |
4409 | 4781 | 6.013725 | TGACCTAGTTATTCACATTCACCACT | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
4425 | 4906 | 1.171308 | CACTCCCGTCCTCGAAGTTA | 58.829 | 55.000 | 0.00 | 0.00 | 39.71 | 2.24 |
4426 | 4907 | 1.749634 | CACTCCCGTCCTCGAAGTTAT | 59.250 | 52.381 | 0.00 | 0.00 | 39.71 | 1.89 |
4437 | 4918 | 7.064253 | CCGTCCTCGAAGTTATAAAATTTCACT | 59.936 | 37.037 | 0.00 | 0.00 | 39.71 | 3.41 |
4475 | 4956 | 3.932822 | TGCTGAAGTGAGCGGTATAAAA | 58.067 | 40.909 | 0.00 | 0.00 | 42.32 | 1.52 |
4478 | 4959 | 3.869065 | TGAAGTGAGCGGTATAAAAGGG | 58.131 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
4486 | 4967 | 5.006153 | AGCGGTATAAAAGGGCAATTTTC | 57.994 | 39.130 | 3.31 | 0.00 | 34.35 | 2.29 |
4491 | 4972 | 6.348498 | GGTATAAAAGGGCAATTTTCAGCAT | 58.652 | 36.000 | 3.31 | 0.00 | 34.35 | 3.79 |
4500 | 4981 | 7.833786 | AGGGCAATTTTCAGCATACATATATG | 58.166 | 34.615 | 11.29 | 11.29 | 41.16 | 1.78 |
4549 | 5126 | 6.792326 | ACTTTGGCTTCTGTTAAACTGTTAC | 58.208 | 36.000 | 0.00 | 0.00 | 0.00 | 2.50 |
4638 | 5249 | 3.891366 | ACTGAGCTAAAGTTGCCAACATT | 59.109 | 39.130 | 10.69 | 6.82 | 0.00 | 2.71 |
4639 | 5250 | 4.022849 | ACTGAGCTAAAGTTGCCAACATTC | 60.023 | 41.667 | 10.69 | 0.00 | 0.00 | 2.67 |
4640 | 5251 | 3.255642 | TGAGCTAAAGTTGCCAACATTCC | 59.744 | 43.478 | 10.69 | 0.00 | 0.00 | 3.01 |
4641 | 5252 | 3.500343 | AGCTAAAGTTGCCAACATTCCT | 58.500 | 40.909 | 10.69 | 2.04 | 0.00 | 3.36 |
4642 | 5253 | 3.256631 | AGCTAAAGTTGCCAACATTCCTG | 59.743 | 43.478 | 10.69 | 0.37 | 0.00 | 3.86 |
4643 | 5254 | 3.005791 | GCTAAAGTTGCCAACATTCCTGT | 59.994 | 43.478 | 10.69 | 0.00 | 37.12 | 4.00 |
4644 | 5255 | 4.217550 | GCTAAAGTTGCCAACATTCCTGTA | 59.782 | 41.667 | 10.69 | 0.00 | 33.36 | 2.74 |
4645 | 5256 | 5.278758 | GCTAAAGTTGCCAACATTCCTGTAA | 60.279 | 40.000 | 10.69 | 0.00 | 33.36 | 2.41 |
4646 | 5257 | 5.806654 | AAAGTTGCCAACATTCCTGTAAT | 57.193 | 34.783 | 10.69 | 0.00 | 33.36 | 1.89 |
4647 | 5258 | 5.391312 | AAGTTGCCAACATTCCTGTAATC | 57.609 | 39.130 | 10.69 | 0.00 | 33.36 | 1.75 |
4648 | 5259 | 4.666512 | AGTTGCCAACATTCCTGTAATCT | 58.333 | 39.130 | 10.69 | 0.00 | 33.36 | 2.40 |
4649 | 5260 | 5.079643 | AGTTGCCAACATTCCTGTAATCTT | 58.920 | 37.500 | 10.69 | 0.00 | 33.36 | 2.40 |
4650 | 5261 | 5.047802 | AGTTGCCAACATTCCTGTAATCTTG | 60.048 | 40.000 | 10.69 | 0.00 | 33.36 | 3.02 |
4651 | 5262 | 3.193267 | TGCCAACATTCCTGTAATCTTGC | 59.807 | 43.478 | 0.00 | 0.00 | 33.36 | 4.01 |
4652 | 5263 | 3.731867 | GCCAACATTCCTGTAATCTTGCG | 60.732 | 47.826 | 0.00 | 0.00 | 33.36 | 4.85 |
4653 | 5264 | 3.689161 | CCAACATTCCTGTAATCTTGCGA | 59.311 | 43.478 | 0.00 | 0.00 | 33.36 | 5.10 |
4654 | 5265 | 4.155826 | CCAACATTCCTGTAATCTTGCGAA | 59.844 | 41.667 | 0.00 | 0.00 | 33.36 | 4.70 |
4655 | 5266 | 4.946784 | ACATTCCTGTAATCTTGCGAAC | 57.053 | 40.909 | 0.00 | 0.00 | 32.49 | 3.95 |
4656 | 5267 | 4.323417 | ACATTCCTGTAATCTTGCGAACA | 58.677 | 39.130 | 0.00 | 0.00 | 32.49 | 3.18 |
4657 | 5268 | 4.943705 | ACATTCCTGTAATCTTGCGAACAT | 59.056 | 37.500 | 0.00 | 0.00 | 32.49 | 2.71 |
4660 | 5271 | 5.079689 | TCCTGTAATCTTGCGAACATACA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
4842 | 5457 | 2.094675 | ACTGGGAGCATTTCATTTCCG | 58.905 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
4885 | 5501 | 5.486526 | CAAGCTGGCATTTTTATTGGGTAA | 58.513 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
5026 | 5642 | 1.078848 | CCCCTTGAAGGAGCTCACG | 60.079 | 63.158 | 13.97 | 0.00 | 37.67 | 4.35 |
5116 | 5732 | 1.536284 | CCCTCGGCTTCTGATACGTTC | 60.536 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
35 | 36 | 0.662619 | TTCCTGTCGTTGCTTGCTTG | 59.337 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
36 | 37 | 0.947244 | CTTCCTGTCGTTGCTTGCTT | 59.053 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
47 | 49 | 5.795972 | AGTTTTAGACCTTAGCTTCCTGTC | 58.204 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
69 | 71 | 4.926238 | ACACTCTGAGCTAATTCACGAAAG | 59.074 | 41.667 | 4.19 | 0.00 | 0.00 | 2.62 |
74 | 76 | 3.329386 | TGCACACTCTGAGCTAATTCAC | 58.671 | 45.455 | 4.19 | 0.00 | 34.99 | 3.18 |
75 | 77 | 3.683365 | TGCACACTCTGAGCTAATTCA | 57.317 | 42.857 | 4.19 | 0.00 | 34.99 | 2.57 |
101 | 104 | 7.147846 | CCAACCAAATAAGGCATGAGTCTATTT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
102 | 105 | 6.322201 | CCAACCAAATAAGGCATGAGTCTATT | 59.678 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
107 | 110 | 3.778265 | ACCAACCAAATAAGGCATGAGT | 58.222 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
165 | 168 | 7.575414 | TGTTAGTTTTGTATGTTCATGGTGT | 57.425 | 32.000 | 0.00 | 0.00 | 0.00 | 4.16 |
211 | 214 | 3.358111 | TGGATCTTCGGCCAATGTTAA | 57.642 | 42.857 | 2.24 | 0.00 | 0.00 | 2.01 |
212 | 215 | 3.118075 | TCATGGATCTTCGGCCAATGTTA | 60.118 | 43.478 | 2.24 | 0.00 | 37.78 | 2.41 |
213 | 216 | 2.026641 | CATGGATCTTCGGCCAATGTT | 58.973 | 47.619 | 2.24 | 0.00 | 37.78 | 2.71 |
234 | 237 | 2.546368 | TCGCAAGCGTTCATACTTGTTT | 59.454 | 40.909 | 14.57 | 0.00 | 44.12 | 2.83 |
238 | 241 | 2.363788 | TCTCGCAAGCGTTCATACTT | 57.636 | 45.000 | 14.57 | 0.00 | 40.74 | 2.24 |
244 | 247 | 1.154654 | CGGTTTCTCGCAAGCGTTC | 60.155 | 57.895 | 14.57 | 2.21 | 41.62 | 3.95 |
248 | 251 | 1.588861 | GAGATACGGTTTCTCGCAAGC | 59.411 | 52.381 | 11.87 | 0.00 | 31.07 | 4.01 |
265 | 268 | 1.078214 | CTTGGAGCCGCATTGGAGA | 60.078 | 57.895 | 0.00 | 0.00 | 42.00 | 3.71 |
323 | 326 | 6.402222 | TGTCAAAGTGTTTGTTAAAGGCATT | 58.598 | 32.000 | 0.00 | 0.00 | 41.36 | 3.56 |
335 | 338 | 5.983540 | TGCCCTTAATTTGTCAAAGTGTTT | 58.016 | 33.333 | 8.48 | 0.00 | 0.00 | 2.83 |
346 | 349 | 4.815846 | ACAAAACAAGCTGCCCTTAATTTG | 59.184 | 37.500 | 15.02 | 15.02 | 40.50 | 2.32 |
357 | 360 | 5.396484 | CCATAGTCATCACAAAACAAGCTG | 58.604 | 41.667 | 0.00 | 0.00 | 0.00 | 4.24 |
358 | 361 | 4.082571 | GCCATAGTCATCACAAAACAAGCT | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 3.74 |
359 | 362 | 4.168760 | GCCATAGTCATCACAAAACAAGC | 58.831 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
404 | 407 | 3.918294 | AGTAGCGGCCTACCAAAAATA | 57.082 | 42.857 | 0.00 | 0.00 | 44.05 | 1.40 |
428 | 456 | 1.876799 | TCGCAACAAATTGACCGATGT | 59.123 | 42.857 | 0.00 | 0.00 | 38.15 | 3.06 |
433 | 461 | 2.928694 | ACGATTCGCAACAAATTGACC | 58.071 | 42.857 | 5.86 | 0.00 | 38.15 | 4.02 |
469 | 497 | 3.369997 | GGAAGAAGAGGACAATCTGACCC | 60.370 | 52.174 | 0.00 | 0.00 | 32.57 | 4.46 |
472 | 500 | 3.772025 | GGAGGAAGAAGAGGACAATCTGA | 59.228 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
506 | 534 | 2.887151 | AGATGAACAGTTTGAGGGGG | 57.113 | 50.000 | 0.00 | 0.00 | 0.00 | 5.40 |
531 | 559 | 4.933400 | GCTCGTATTTCTGTTGGTTAGGAA | 59.067 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
537 | 565 | 1.722011 | CGGCTCGTATTTCTGTTGGT | 58.278 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
544 | 572 | 1.859080 | AGAAATCGCGGCTCGTATTTC | 59.141 | 47.619 | 16.54 | 16.54 | 40.62 | 2.17 |
556 | 584 | 2.556257 | GAGGGAAGAGGAAGAAATCGC | 58.444 | 52.381 | 0.00 | 0.00 | 0.00 | 4.58 |
570 | 598 | 1.916777 | GAGACGGGTTGGGAGGGAA | 60.917 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
626 | 654 | 0.798776 | GAAGTGACATTGCGTCCCAG | 59.201 | 55.000 | 0.00 | 0.00 | 44.71 | 4.45 |
627 | 655 | 0.605319 | GGAAGTGACATTGCGTCCCA | 60.605 | 55.000 | 0.00 | 0.00 | 44.71 | 4.37 |
661 | 690 | 3.829601 | ACCATGGCTTAAATTGGACGAAA | 59.170 | 39.130 | 13.04 | 0.00 | 33.36 | 3.46 |
672 | 701 | 5.183140 | GCTTTTAACTCTGACCATGGCTTAA | 59.817 | 40.000 | 13.04 | 3.42 | 0.00 | 1.85 |
673 | 702 | 4.700213 | GCTTTTAACTCTGACCATGGCTTA | 59.300 | 41.667 | 13.04 | 0.00 | 0.00 | 3.09 |
678 | 707 | 2.755103 | GGGGCTTTTAACTCTGACCATG | 59.245 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
766 | 796 | 0.036022 | AGGAGAAGCAACACCTGAGC | 59.964 | 55.000 | 0.00 | 0.00 | 30.27 | 4.26 |
770 | 800 | 0.036022 | GCAGAGGAGAAGCAACACCT | 59.964 | 55.000 | 0.00 | 0.00 | 33.84 | 4.00 |
786 | 816 | 0.504384 | CGCCAGTCGATATTTCGCAG | 59.496 | 55.000 | 0.18 | 0.00 | 45.10 | 5.18 |
794 | 824 | 0.104120 | CCCATTCACGCCAGTCGATA | 59.896 | 55.000 | 0.00 | 0.00 | 41.67 | 2.92 |
801 | 831 | 0.468214 | TGAAAACCCCATTCACGCCA | 60.468 | 50.000 | 0.00 | 0.00 | 32.10 | 5.69 |
806 | 836 | 4.387598 | CAATTGCTTGAAAACCCCATTCA | 58.612 | 39.130 | 0.00 | 0.00 | 34.04 | 2.57 |
809 | 839 | 2.978278 | TCCAATTGCTTGAAAACCCCAT | 59.022 | 40.909 | 0.00 | 0.00 | 34.04 | 4.00 |
812 | 842 | 4.270245 | TCATCCAATTGCTTGAAAACCC | 57.730 | 40.909 | 0.00 | 0.00 | 34.04 | 4.11 |
814 | 844 | 5.121142 | CACCATCATCCAATTGCTTGAAAAC | 59.879 | 40.000 | 11.20 | 0.00 | 34.04 | 2.43 |
826 | 856 | 2.528673 | TGCCATTCACCATCATCCAA | 57.471 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
830 | 860 | 2.094078 | CGGTTTTGCCATTCACCATCAT | 60.094 | 45.455 | 0.00 | 0.00 | 36.97 | 2.45 |
836 | 866 | 4.805219 | ACTTATTCGGTTTTGCCATTCAC | 58.195 | 39.130 | 0.00 | 0.00 | 36.97 | 3.18 |
872 | 902 | 4.560108 | GCTCTGCAGGATTGAAAACACAAT | 60.560 | 41.667 | 15.13 | 0.00 | 42.19 | 2.71 |
876 | 906 | 2.585330 | TGCTCTGCAGGATTGAAAACA | 58.415 | 42.857 | 15.13 | 0.00 | 33.32 | 2.83 |
877 | 907 | 3.863142 | ATGCTCTGCAGGATTGAAAAC | 57.137 | 42.857 | 15.13 | 0.00 | 43.65 | 2.43 |
910 | 941 | 5.155278 | TGCTTCGGTTCTAAGAACCATAA | 57.845 | 39.130 | 18.33 | 12.73 | 40.28 | 1.90 |
921 | 952 | 4.647424 | TTTTGTCAAATGCTTCGGTTCT | 57.353 | 36.364 | 0.00 | 0.00 | 0.00 | 3.01 |
993 | 1024 | 2.878429 | CGAGGTCAGTCAGTCCCG | 59.122 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
1155 | 1187 | 4.430765 | GTCGGCGATGGTGACCGT | 62.431 | 66.667 | 14.79 | 0.00 | 46.92 | 4.83 |
1248 | 1280 | 2.498941 | GGATGAGACGGGATGCGGA | 61.499 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
1249 | 1281 | 2.029666 | GGATGAGACGGGATGCGG | 59.970 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1551 | 1593 | 2.599082 | GCGTCAGACAAATCGAACCTAG | 59.401 | 50.000 | 0.41 | 0.00 | 0.00 | 3.02 |
1609 | 1651 | 9.256477 | CATCATTTTGATTCCATGGAAATACTG | 57.744 | 33.333 | 30.28 | 20.60 | 34.28 | 2.74 |
1613 | 1655 | 9.169592 | GTTTCATCATTTTGATTCCATGGAAAT | 57.830 | 29.630 | 30.28 | 18.37 | 34.28 | 2.17 |
1645 | 1689 | 0.757188 | AGGGACCCGCTATGTCTCAG | 60.757 | 60.000 | 4.40 | 0.00 | 35.60 | 3.35 |
1652 | 1696 | 2.574955 | GCATCGAGGGACCCGCTAT | 61.575 | 63.158 | 12.91 | 3.91 | 0.00 | 2.97 |
1661 | 1705 | 4.227134 | CCCGGTCTGCATCGAGGG | 62.227 | 72.222 | 0.00 | 4.74 | 0.00 | 4.30 |
1668 | 1712 | 1.760613 | CCTCTATAAACCCGGTCTGCA | 59.239 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
1673 | 1717 | 1.761198 | GTGCTCCTCTATAAACCCGGT | 59.239 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
1816 | 1864 | 0.523072 | CGGGCAATGGTCAAAGAGTG | 59.477 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1817 | 1865 | 0.110486 | ACGGGCAATGGTCAAAGAGT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1841 | 1889 | 3.074687 | TGGCAGGACAGGGTGTAAAAATA | 59.925 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
1843 | 1891 | 1.215673 | TGGCAGGACAGGGTGTAAAAA | 59.784 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
1847 | 1895 | 0.327924 | CATTGGCAGGACAGGGTGTA | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1852 | 1900 | 2.827322 | TCAAAATCATTGGCAGGACAGG | 59.173 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
1881 | 1929 | 5.402054 | AGGGATAAGATTTGCCACCAATA | 57.598 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
2098 | 2148 | 6.108015 | CCATTAGCTGTTTGGTGCATTAAAT | 58.892 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2102 | 2152 | 2.899256 | ACCATTAGCTGTTTGGTGCATT | 59.101 | 40.909 | 14.18 | 0.00 | 42.09 | 3.56 |
2131 | 2181 | 6.662616 | CAGACAAACTTAAGTGTCATCAAGG | 58.337 | 40.000 | 21.68 | 3.09 | 45.40 | 3.61 |
2223 | 2273 | 0.104671 | TGGAAAGGCAGCAGCAAAAC | 59.895 | 50.000 | 2.65 | 0.00 | 44.61 | 2.43 |
2247 | 2297 | 8.592529 | TTGGATGAACATATTCCTCAAAATCA | 57.407 | 30.769 | 0.00 | 0.00 | 32.65 | 2.57 |
2289 | 2339 | 2.517959 | TGCCTTAGGGATATGCATTGC | 58.482 | 47.619 | 3.54 | 0.46 | 33.58 | 3.56 |
2316 | 2366 | 1.203050 | ACCCCTCCAAACATGTTCTGG | 60.203 | 52.381 | 23.17 | 23.17 | 0.00 | 3.86 |
2319 | 2369 | 4.086457 | ACATTACCCCTCCAAACATGTTC | 58.914 | 43.478 | 12.39 | 0.00 | 0.00 | 3.18 |
2353 | 2403 | 6.211587 | TCTTGCATACTGGAAAATTCATGG | 57.788 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
2354 | 2404 | 6.200286 | GCATCTTGCATACTGGAAAATTCATG | 59.800 | 38.462 | 0.00 | 0.00 | 44.26 | 3.07 |
2375 | 2425 | 6.714810 | TGAATACCCATATAAGTGGTTGCATC | 59.285 | 38.462 | 0.00 | 0.00 | 37.57 | 3.91 |
2398 | 2448 | 9.083422 | TGGAAACCAAAGATTAAATGTACATGA | 57.917 | 29.630 | 9.63 | 0.00 | 0.00 | 3.07 |
2442 | 2493 | 9.871175 | TTGGTGGTATAGATCAACATACTACTA | 57.129 | 33.333 | 18.93 | 14.30 | 38.47 | 1.82 |
2443 | 2494 | 8.777578 | TTGGTGGTATAGATCAACATACTACT | 57.222 | 34.615 | 18.93 | 0.00 | 38.47 | 2.57 |
2444 | 2495 | 9.826574 | TTTTGGTGGTATAGATCAACATACTAC | 57.173 | 33.333 | 14.74 | 14.74 | 37.99 | 2.73 |
2470 | 2521 | 8.912988 | TGTCTGTCCTTTTAGATCAACATTTTT | 58.087 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2471 | 2522 | 8.352942 | GTGTCTGTCCTTTTAGATCAACATTTT | 58.647 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2472 | 2523 | 7.502226 | TGTGTCTGTCCTTTTAGATCAACATTT | 59.498 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2473 | 2524 | 6.998074 | TGTGTCTGTCCTTTTAGATCAACATT | 59.002 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2474 | 2525 | 6.533730 | TGTGTCTGTCCTTTTAGATCAACAT | 58.466 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2475 | 2526 | 5.924356 | TGTGTCTGTCCTTTTAGATCAACA | 58.076 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
2476 | 2527 | 5.992217 | ACTGTGTCTGTCCTTTTAGATCAAC | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2477 | 2528 | 5.991606 | CACTGTGTCTGTCCTTTTAGATCAA | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2478 | 2529 | 5.541845 | CACTGTGTCTGTCCTTTTAGATCA | 58.458 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
2479 | 2530 | 4.390297 | GCACTGTGTCTGTCCTTTTAGATC | 59.610 | 45.833 | 9.86 | 0.00 | 0.00 | 2.75 |
2480 | 2531 | 4.202357 | TGCACTGTGTCTGTCCTTTTAGAT | 60.202 | 41.667 | 9.86 | 0.00 | 0.00 | 1.98 |
2481 | 2532 | 3.133901 | TGCACTGTGTCTGTCCTTTTAGA | 59.866 | 43.478 | 9.86 | 0.00 | 0.00 | 2.10 |
2482 | 2533 | 3.466836 | TGCACTGTGTCTGTCCTTTTAG | 58.533 | 45.455 | 9.86 | 0.00 | 0.00 | 1.85 |
2483 | 2534 | 3.552132 | TGCACTGTGTCTGTCCTTTTA | 57.448 | 42.857 | 9.86 | 0.00 | 0.00 | 1.52 |
2484 | 2535 | 2.418368 | TGCACTGTGTCTGTCCTTTT | 57.582 | 45.000 | 9.86 | 0.00 | 0.00 | 2.27 |
2485 | 2536 | 2.645838 | ATGCACTGTGTCTGTCCTTT | 57.354 | 45.000 | 9.86 | 0.00 | 0.00 | 3.11 |
2486 | 2537 | 2.899900 | TCTATGCACTGTGTCTGTCCTT | 59.100 | 45.455 | 9.86 | 0.00 | 0.00 | 3.36 |
2487 | 2538 | 2.529632 | TCTATGCACTGTGTCTGTCCT | 58.470 | 47.619 | 9.86 | 0.00 | 0.00 | 3.85 |
2488 | 2539 | 3.257393 | CTTCTATGCACTGTGTCTGTCC | 58.743 | 50.000 | 9.86 | 0.00 | 0.00 | 4.02 |
2489 | 2540 | 2.670414 | GCTTCTATGCACTGTGTCTGTC | 59.330 | 50.000 | 9.86 | 0.00 | 0.00 | 3.51 |
2490 | 2541 | 2.301296 | AGCTTCTATGCACTGTGTCTGT | 59.699 | 45.455 | 9.86 | 0.00 | 34.99 | 3.41 |
2491 | 2542 | 2.928757 | GAGCTTCTATGCACTGTGTCTG | 59.071 | 50.000 | 9.86 | 0.00 | 34.99 | 3.51 |
2492 | 2543 | 2.093764 | GGAGCTTCTATGCACTGTGTCT | 60.094 | 50.000 | 9.86 | 0.00 | 34.99 | 3.41 |
2493 | 2544 | 2.275318 | GGAGCTTCTATGCACTGTGTC | 58.725 | 52.381 | 9.86 | 2.63 | 34.99 | 3.67 |
2494 | 2545 | 1.065854 | GGGAGCTTCTATGCACTGTGT | 60.066 | 52.381 | 9.86 | 0.00 | 34.99 | 3.72 |
2495 | 2546 | 1.065926 | TGGGAGCTTCTATGCACTGTG | 60.066 | 52.381 | 2.76 | 2.76 | 34.99 | 3.66 |
2496 | 2547 | 1.065854 | GTGGGAGCTTCTATGCACTGT | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 3.55 |
2497 | 2548 | 1.065926 | TGTGGGAGCTTCTATGCACTG | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 3.66 |
2498 | 2549 | 1.065854 | GTGTGGGAGCTTCTATGCACT | 60.066 | 52.381 | 0.00 | 0.00 | 34.99 | 4.40 |
2499 | 2550 | 1.339055 | TGTGTGGGAGCTTCTATGCAC | 60.339 | 52.381 | 0.00 | 0.00 | 34.99 | 4.57 |
2500 | 2551 | 0.983467 | TGTGTGGGAGCTTCTATGCA | 59.017 | 50.000 | 0.00 | 0.00 | 34.99 | 3.96 |
2501 | 2552 | 2.012673 | CTTGTGTGGGAGCTTCTATGC | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
2502 | 2553 | 2.026822 | ACCTTGTGTGGGAGCTTCTATG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2503 | 2554 | 2.026822 | CACCTTGTGTGGGAGCTTCTAT | 60.027 | 50.000 | 0.00 | 0.00 | 41.52 | 1.98 |
2504 | 2555 | 1.347707 | CACCTTGTGTGGGAGCTTCTA | 59.652 | 52.381 | 0.00 | 0.00 | 41.52 | 2.10 |
2505 | 2556 | 0.109342 | CACCTTGTGTGGGAGCTTCT | 59.891 | 55.000 | 0.00 | 0.00 | 41.52 | 2.85 |
2506 | 2557 | 2.633860 | CACCTTGTGTGGGAGCTTC | 58.366 | 57.895 | 0.00 | 0.00 | 41.52 | 3.86 |
2507 | 2558 | 4.907457 | CACCTTGTGTGGGAGCTT | 57.093 | 55.556 | 0.00 | 0.00 | 41.52 | 3.74 |
2514 | 2565 | 1.228245 | CCAGACCCCACCTTGTGTG | 60.228 | 63.158 | 0.00 | 0.00 | 45.01 | 3.82 |
2515 | 2566 | 2.460853 | CCCAGACCCCACCTTGTGT | 61.461 | 63.158 | 0.00 | 0.00 | 0.00 | 3.72 |
2516 | 2567 | 2.436109 | CCCAGACCCCACCTTGTG | 59.564 | 66.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2517 | 2568 | 2.858974 | CCCCAGACCCCACCTTGT | 60.859 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2518 | 2569 | 2.531685 | TCCCCAGACCCCACCTTG | 60.532 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
2519 | 2570 | 2.204151 | CTCCCCAGACCCCACCTT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 3.50 |
2520 | 2571 | 4.354943 | CCTCCCCAGACCCCACCT | 62.355 | 72.222 | 0.00 | 0.00 | 0.00 | 4.00 |
2522 | 2573 | 3.660092 | ATCCCTCCCCAGACCCCAC | 62.660 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
2523 | 2574 | 1.542093 | TAATCCCTCCCCAGACCCCA | 61.542 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2524 | 2575 | 0.103876 | ATAATCCCTCCCCAGACCCC | 60.104 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2525 | 2576 | 2.157989 | ACTATAATCCCTCCCCAGACCC | 60.158 | 54.545 | 0.00 | 0.00 | 0.00 | 4.46 |
2526 | 2577 | 3.277416 | ACTATAATCCCTCCCCAGACC | 57.723 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2527 | 2578 | 3.770388 | GCTACTATAATCCCTCCCCAGAC | 59.230 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
2528 | 2579 | 3.404769 | TGCTACTATAATCCCTCCCCAGA | 59.595 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
2529 | 2580 | 3.791320 | TGCTACTATAATCCCTCCCCAG | 58.209 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2530 | 2581 | 3.935240 | TGCTACTATAATCCCTCCCCA | 57.065 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
2531 | 2582 | 4.104831 | ACATGCTACTATAATCCCTCCCC | 58.895 | 47.826 | 0.00 | 0.00 | 0.00 | 4.81 |
2532 | 2583 | 5.248477 | TCAACATGCTACTATAATCCCTCCC | 59.752 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2533 | 2584 | 6.166982 | GTCAACATGCTACTATAATCCCTCC | 58.833 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2534 | 2585 | 6.014156 | AGGTCAACATGCTACTATAATCCCTC | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2535 | 2586 | 5.846714 | AGGTCAACATGCTACTATAATCCCT | 59.153 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2536 | 2587 | 6.115448 | AGGTCAACATGCTACTATAATCCC | 57.885 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2537 | 2588 | 9.726438 | AATTAGGTCAACATGCTACTATAATCC | 57.274 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2544 | 2595 | 7.136822 | TGGATAATTAGGTCAACATGCTACT | 57.863 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2553 | 2604 | 6.667414 | AGTGGCAATTTGGATAATTAGGTCAA | 59.333 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2557 | 2608 | 5.069516 | AGCAGTGGCAATTTGGATAATTAGG | 59.930 | 40.000 | 0.00 | 0.00 | 44.61 | 2.69 |
2603 | 2654 | 3.450096 | TGTGCTATTTGCCATTTGCCATA | 59.550 | 39.130 | 0.00 | 0.00 | 42.00 | 2.74 |
2604 | 2655 | 2.236644 | TGTGCTATTTGCCATTTGCCAT | 59.763 | 40.909 | 0.00 | 0.00 | 42.00 | 4.40 |
2605 | 2656 | 1.622312 | TGTGCTATTTGCCATTTGCCA | 59.378 | 42.857 | 0.00 | 0.00 | 42.00 | 4.92 |
2606 | 2657 | 2.383368 | TGTGCTATTTGCCATTTGCC | 57.617 | 45.000 | 0.00 | 0.00 | 42.00 | 4.52 |
2607 | 2658 | 5.981174 | CATATTGTGCTATTTGCCATTTGC | 58.019 | 37.500 | 0.00 | 0.00 | 42.00 | 3.68 |
2707 | 2759 | 2.267426 | CCGATCATTGTACAGTTCGCA | 58.733 | 47.619 | 6.88 | 0.00 | 0.00 | 5.10 |
2759 | 2811 | 3.054728 | TGTCTCTCTAGTCTGGACTCTGG | 60.055 | 52.174 | 6.52 | 0.28 | 42.54 | 3.86 |
2760 | 2812 | 4.214986 | TGTCTCTCTAGTCTGGACTCTG | 57.785 | 50.000 | 6.52 | 2.53 | 42.54 | 3.35 |
2761 | 2813 | 4.919774 | TTGTCTCTCTAGTCTGGACTCT | 57.080 | 45.455 | 6.52 | 0.00 | 42.54 | 3.24 |
2762 | 2814 | 5.650266 | TCAATTGTCTCTCTAGTCTGGACTC | 59.350 | 44.000 | 6.52 | 0.00 | 42.54 | 3.36 |
2763 | 2815 | 5.417580 | GTCAATTGTCTCTCTAGTCTGGACT | 59.582 | 44.000 | 5.13 | 8.36 | 45.02 | 3.85 |
2764 | 2816 | 5.393678 | GGTCAATTGTCTCTCTAGTCTGGAC | 60.394 | 48.000 | 5.13 | 0.00 | 0.00 | 4.02 |
2765 | 2817 | 4.707448 | GGTCAATTGTCTCTCTAGTCTGGA | 59.293 | 45.833 | 5.13 | 0.00 | 0.00 | 3.86 |
2766 | 2818 | 4.709397 | AGGTCAATTGTCTCTCTAGTCTGG | 59.291 | 45.833 | 5.13 | 0.00 | 0.00 | 3.86 |
2767 | 2819 | 5.184864 | ACAGGTCAATTGTCTCTCTAGTCTG | 59.815 | 44.000 | 5.13 | 3.09 | 0.00 | 3.51 |
2852 | 2907 | 5.573380 | ATCTGCCCAGACAATGTGTATAT | 57.427 | 39.130 | 0.00 | 0.00 | 40.75 | 0.86 |
2856 | 2911 | 2.224843 | TGAATCTGCCCAGACAATGTGT | 60.225 | 45.455 | 0.00 | 0.00 | 40.75 | 3.72 |
2902 | 2957 | 8.916628 | TGCCATACATGCTCTATATTTGTTTA | 57.083 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
2974 | 3030 | 7.617041 | ACTGGAGTTAGAATAAACATTCAGC | 57.383 | 36.000 | 0.65 | 0.00 | 31.82 | 4.26 |
3034 | 3090 | 0.464735 | GCCTAGAGTCGAGCCTCTGA | 60.465 | 60.000 | 14.17 | 0.80 | 41.81 | 3.27 |
3124 | 3180 | 5.010282 | ACAAGGTGAAAAGTTTCAGACAGT | 58.990 | 37.500 | 6.72 | 2.31 | 46.80 | 3.55 |
3289 | 3345 | 6.389830 | TTCTTTTGAGCAGCTAAATGTTCA | 57.610 | 33.333 | 0.00 | 0.00 | 38.46 | 3.18 |
3292 | 3348 | 6.040842 | TCCTTTTCTTTTGAGCAGCTAAATGT | 59.959 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
3460 | 3516 | 7.862648 | TCTGTATTTACATAAAAACACGTGCA | 58.137 | 30.769 | 17.22 | 0.00 | 35.36 | 4.57 |
3635 | 3691 | 5.855045 | AGATATCGTACCTTCCCACAAATC | 58.145 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
3701 | 3764 | 0.687354 | ATTGTCGGAGTTGTCAGGCT | 59.313 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
3715 | 3778 | 1.372582 | TGCGATTCCAGCAGATTGTC | 58.627 | 50.000 | 0.00 | 0.00 | 40.01 | 3.18 |
3731 | 3794 | 0.449388 | GCAGAACTCCATTTCCTGCG | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3804 | 3867 | 1.531423 | CATCCCATGCTGCAGATACC | 58.469 | 55.000 | 20.43 | 0.00 | 0.00 | 2.73 |
3827 | 3890 | 7.676468 | AGATACTTCTTCCCTTTACAGACTCTT | 59.324 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
3873 | 3936 | 8.333186 | GCAAAGAACTACGGTATTATTTACAGG | 58.667 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
3927 | 3990 | 4.055360 | TGATTTCAGTACACACAAGTCGG | 58.945 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3934 | 4000 | 7.667043 | TTGGTAGATTGATTTCAGTACACAC | 57.333 | 36.000 | 0.00 | 0.00 | 0.00 | 3.82 |
3967 | 4033 | 8.826710 | CAACAATATACACACGAAATATCCAGT | 58.173 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
4208 | 4347 | 9.863650 | ACAATAATGAGCTAACCTAGTACTCTA | 57.136 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
4209 | 4348 | 8.770010 | ACAATAATGAGCTAACCTAGTACTCT | 57.230 | 34.615 | 0.00 | 0.00 | 0.00 | 3.24 |
4244 | 4561 | 6.313905 | CAGTGGTGAATGTGAATAACTAGGTC | 59.686 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
4245 | 4562 | 6.173339 | CAGTGGTGAATGTGAATAACTAGGT | 58.827 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
4250 | 4567 | 4.759693 | TGGACAGTGGTGAATGTGAATAAC | 59.240 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
4251 | 4568 | 4.979335 | TGGACAGTGGTGAATGTGAATAA | 58.021 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
4252 | 4569 | 4.632327 | TGGACAGTGGTGAATGTGAATA | 57.368 | 40.909 | 0.00 | 0.00 | 0.00 | 1.75 |
4253 | 4570 | 3.507162 | TGGACAGTGGTGAATGTGAAT | 57.493 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
4386 | 4758 | 6.374417 | AGTGGTGAATGTGAATAACTAGGT | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
4387 | 4759 | 5.817816 | GGAGTGGTGAATGTGAATAACTAGG | 59.182 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4389 | 4761 | 5.625886 | CGGGAGTGGTGAATGTGAATAACTA | 60.626 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4390 | 4762 | 4.589908 | GGGAGTGGTGAATGTGAATAACT | 58.410 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
4391 | 4763 | 3.374058 | CGGGAGTGGTGAATGTGAATAAC | 59.626 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
4392 | 4764 | 3.008594 | ACGGGAGTGGTGAATGTGAATAA | 59.991 | 43.478 | 0.00 | 0.00 | 44.82 | 1.40 |
4393 | 4765 | 2.569853 | ACGGGAGTGGTGAATGTGAATA | 59.430 | 45.455 | 0.00 | 0.00 | 44.82 | 1.75 |
4394 | 4766 | 1.351017 | ACGGGAGTGGTGAATGTGAAT | 59.649 | 47.619 | 0.00 | 0.00 | 44.82 | 2.57 |
4395 | 4767 | 0.762418 | ACGGGAGTGGTGAATGTGAA | 59.238 | 50.000 | 0.00 | 0.00 | 44.82 | 3.18 |
4396 | 4768 | 2.447630 | ACGGGAGTGGTGAATGTGA | 58.552 | 52.632 | 0.00 | 0.00 | 44.82 | 3.58 |
4408 | 4780 | 4.644103 | TTTATAACTTCGAGGACGGGAG | 57.356 | 45.455 | 0.00 | 0.00 | 40.21 | 4.30 |
4409 | 4781 | 5.603170 | ATTTTATAACTTCGAGGACGGGA | 57.397 | 39.130 | 0.00 | 0.00 | 40.21 | 5.14 |
4475 | 4956 | 7.093640 | CCATATATGTATGCTGAAAATTGCCCT | 60.094 | 37.037 | 11.73 | 0.00 | 37.06 | 5.19 |
4478 | 4959 | 9.132521 | GAACCATATATGTATGCTGAAAATTGC | 57.867 | 33.333 | 11.73 | 0.00 | 37.06 | 3.56 |
4486 | 4967 | 8.846943 | TTTGTAGGAACCATATATGTATGCTG | 57.153 | 34.615 | 11.73 | 0.00 | 37.06 | 4.41 |
4491 | 4972 | 7.750655 | TGCCATTTGTAGGAACCATATATGTA | 58.249 | 34.615 | 11.73 | 0.00 | 0.00 | 2.29 |
4500 | 4981 | 6.715347 | ATCTTTATGCCATTTGTAGGAACC | 57.285 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
4502 | 5079 | 9.474313 | AAGTAATCTTTATGCCATTTGTAGGAA | 57.526 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
4549 | 5126 | 6.645415 | ACGGACACTTTGATCTAACTAAACAG | 59.355 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
4647 | 5258 | 6.128553 | ACTGTTGTTATCTGTATGTTCGCAAG | 60.129 | 38.462 | 0.00 | 0.00 | 0.00 | 4.01 |
4648 | 5259 | 5.699001 | ACTGTTGTTATCTGTATGTTCGCAA | 59.301 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4649 | 5260 | 5.234752 | ACTGTTGTTATCTGTATGTTCGCA | 58.765 | 37.500 | 0.00 | 0.00 | 0.00 | 5.10 |
4650 | 5261 | 5.779806 | ACTGTTGTTATCTGTATGTTCGC | 57.220 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
4651 | 5262 | 7.758076 | TCCTTACTGTTGTTATCTGTATGTTCG | 59.242 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
4652 | 5263 | 8.997621 | TCCTTACTGTTGTTATCTGTATGTTC | 57.002 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
4653 | 5264 | 8.812972 | TCTCCTTACTGTTGTTATCTGTATGTT | 58.187 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
4654 | 5265 | 8.362464 | TCTCCTTACTGTTGTTATCTGTATGT | 57.638 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
4655 | 5266 | 9.653287 | TTTCTCCTTACTGTTGTTATCTGTATG | 57.347 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
4657 | 5268 | 9.653287 | CATTTCTCCTTACTGTTGTTATCTGTA | 57.347 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
4660 | 5271 | 7.168219 | TGCATTTCTCCTTACTGTTGTTATCT | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
4754 | 5366 | 3.625764 | TGTGTAACTGAGGTTTGTTGCTC | 59.374 | 43.478 | 0.00 | 0.00 | 38.04 | 4.26 |
4763 | 5375 | 3.403038 | GCTGTCATTGTGTAACTGAGGT | 58.597 | 45.455 | 0.00 | 0.00 | 38.04 | 3.85 |
4842 | 5457 | 0.182299 | CTGGCTCTCCCCTTCCATTC | 59.818 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
4852 | 5467 | 2.438075 | CCAGCTTGCTGGCTCTCC | 60.438 | 66.667 | 25.97 | 0.00 | 41.00 | 3.71 |
4885 | 5501 | 2.764314 | GCGCTGGCCATCAAACGAT | 61.764 | 57.895 | 5.51 | 0.00 | 0.00 | 3.73 |
4925 | 5541 | 3.418047 | ACCTGTAGGCGCTAAAATTGTT | 58.582 | 40.909 | 7.64 | 0.00 | 39.32 | 2.83 |
4927 | 5543 | 3.427503 | CCAACCTGTAGGCGCTAAAATTG | 60.428 | 47.826 | 7.64 | 3.98 | 39.32 | 2.32 |
5101 | 5717 | 1.917921 | CGCGAACGTATCAGAAGCC | 59.082 | 57.895 | 0.00 | 0.00 | 33.53 | 4.35 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.