Multiple sequence alignment - TraesCS3B01G473200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G473200 chr3B 100.000 3581 0 0 1 3581 722364180 722367760 0.000000e+00 6613
1 TraesCS3B01G473200 chr3D 92.123 3453 211 31 1 3424 545919354 545922774 0.000000e+00 4813
2 TraesCS3B01G473200 chr3D 92.473 186 10 4 3396 3581 515339756 515339937 2.740000e-66 263
3 TraesCS3B01G473200 chr3A 92.853 3330 203 22 89 3389 682331386 682334709 0.000000e+00 4798
4 TraesCS3B01G473200 chr3A 93.976 83 5 0 1 83 682330960 682331042 3.750000e-25 126
5 TraesCS3B01G473200 chr5D 98.182 165 2 1 3418 3581 393294554 393294390 1.630000e-73 287
6 TraesCS3B01G473200 chr7D 97.006 167 3 2 3416 3581 301572627 301572462 2.720000e-71 279
7 TraesCS3B01G473200 chr7B 97.024 168 2 3 3416 3581 366190266 366190100 2.720000e-71 279
8 TraesCS3B01G473200 chr5A 97.024 168 2 2 3416 3581 227087291 227087125 2.720000e-71 279
9 TraesCS3B01G473200 chr5A 95.376 173 6 2 3411 3581 408983144 408983316 1.270000e-69 274
10 TraesCS3B01G473200 chr1D 95.906 171 5 2 3411 3581 400812618 400812786 3.520000e-70 276
11 TraesCS3B01G473200 chr1D 94.886 176 3 4 3406 3581 306162801 306162632 1.640000e-68 270
12 TraesCS3B01G473200 chr5B 94.350 177 8 2 3406 3581 405960942 405961117 1.640000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G473200 chr3B 722364180 722367760 3580 False 6613 6613 100.0000 1 3581 1 chr3B.!!$F1 3580
1 TraesCS3B01G473200 chr3D 545919354 545922774 3420 False 4813 4813 92.1230 1 3424 1 chr3D.!!$F2 3423
2 TraesCS3B01G473200 chr3A 682330960 682334709 3749 False 2462 4798 93.4145 1 3389 2 chr3A.!!$F1 3388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 1106 0.099436 GCATTCCACAACATCCGAGC 59.901 55.0 0.00 0.0 0.0 5.03 F
953 1337 0.461339 ACTCGCGACCTCTCTCTCTC 60.461 60.0 3.71 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 2068 0.393132 TTTGACTGCAACACGACCCA 60.393 50.0 0.0 0.0 32.79 4.51 R
2716 3108 1.187087 GGGGAGACGAGACACATCTT 58.813 55.0 0.0 0.0 34.34 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.639310 AGATCTTTTGGCTGCTGATTGTAG 59.361 41.667 0.00 0.00 0.00 2.74
198 553 1.668237 TGATTGTGTTGTGTGTGTCCG 59.332 47.619 0.00 0.00 0.00 4.79
311 668 2.065512 CCAAAACGCCAGCCAATTAAC 58.934 47.619 0.00 0.00 0.00 2.01
312 669 2.288763 CCAAAACGCCAGCCAATTAACT 60.289 45.455 0.00 0.00 0.00 2.24
313 670 2.723124 AAACGCCAGCCAATTAACTG 57.277 45.000 0.85 0.85 0.00 3.16
319 676 2.927553 CAGCCAATTAACTGGAGTGC 57.072 50.000 7.24 0.00 38.96 4.40
320 677 1.131126 CAGCCAATTAACTGGAGTGCG 59.869 52.381 7.24 0.00 38.96 5.34
321 678 1.003118 AGCCAATTAACTGGAGTGCGA 59.997 47.619 7.24 0.00 38.96 5.10
322 679 1.810151 GCCAATTAACTGGAGTGCGAA 59.190 47.619 7.24 0.00 38.96 4.70
323 680 2.227865 GCCAATTAACTGGAGTGCGAAA 59.772 45.455 7.24 0.00 38.96 3.46
324 681 3.670627 GCCAATTAACTGGAGTGCGAAAG 60.671 47.826 7.24 0.00 38.96 2.62
325 682 3.751175 CCAATTAACTGGAGTGCGAAAGA 59.249 43.478 0.00 0.00 38.96 2.52
326 683 4.396166 CCAATTAACTGGAGTGCGAAAGAT 59.604 41.667 0.00 0.00 38.96 2.40
359 732 2.617021 GGTGGAGGCCGAATCTAAACAA 60.617 50.000 0.00 0.00 0.00 2.83
382 755 8.903820 ACAACCCTTCTAACTTTGCATAATATC 58.096 33.333 0.00 0.00 0.00 1.63
491 866 6.312672 CGGTGACATAATGTGACAACTAATGA 59.687 38.462 0.00 0.00 36.17 2.57
509 884 8.794335 ACTAATGAGGACCAAAGAAACTATTC 57.206 34.615 0.00 0.00 35.70 1.75
566 941 0.454196 TCGTCGAGGCGAATTCATCA 59.546 50.000 6.22 0.00 37.72 3.07
571 946 2.101415 TCGAGGCGAATTCATCAGTGAT 59.899 45.455 6.22 0.00 30.77 3.06
718 1102 2.496871 TCATTGGCATTCCACAACATCC 59.503 45.455 0.00 0.00 43.33 3.51
722 1106 0.099436 GCATTCCACAACATCCGAGC 59.901 55.000 0.00 0.00 0.00 5.03
756 1140 7.998383 TCCACACCTATGCAATGTAGATTTTAT 59.002 33.333 0.00 0.00 0.00 1.40
789 1173 3.513909 TCTCGTTAATCTATCCCCCGA 57.486 47.619 0.00 0.00 0.00 5.14
882 1266 1.069296 CACACAAACGATCGCAACCAT 60.069 47.619 16.60 0.00 0.00 3.55
923 1307 0.605319 ACTTGTATGCACCACCGTGG 60.605 55.000 16.47 16.47 45.02 4.94
952 1336 0.742990 CACTCGCGACCTCTCTCTCT 60.743 60.000 3.71 0.00 0.00 3.10
953 1337 0.461339 ACTCGCGACCTCTCTCTCTC 60.461 60.000 3.71 0.00 0.00 3.20
1117 1501 3.239627 AAGGCGGTGGAGGAGGAGA 62.240 63.158 0.00 0.00 0.00 3.71
1158 1542 1.761174 GGTGGTGGGAGAGCAGAAA 59.239 57.895 0.00 0.00 30.97 2.52
1185 1569 4.821589 GCCGAGGTGGAAGCCGAG 62.822 72.222 0.00 0.00 42.00 4.63
1442 1826 7.365497 TGCATTATGAAGAGGAGAGTTGATA 57.635 36.000 0.00 0.00 0.00 2.15
1482 1866 5.913137 TGGATTCAAAACCCATACACATC 57.087 39.130 0.00 0.00 0.00 3.06
1502 1886 9.574516 ACACATCTCCTTTATGTAAGAAAAACT 57.425 29.630 0.00 0.00 35.82 2.66
1530 1914 7.274686 AGTGAAAACCAAATACAAACACGAAAG 59.725 33.333 0.00 0.00 0.00 2.62
1601 1986 1.628340 TCCCAACATCACGGAACATCT 59.372 47.619 0.00 0.00 0.00 2.90
1664 2049 1.615392 GGCAACTCATGAGCAACCTTT 59.385 47.619 22.83 5.41 0.00 3.11
1701 2086 0.179032 ATGGGTCGTGTTGCAGTCAA 60.179 50.000 0.00 0.00 0.00 3.18
1716 2101 8.087136 TGTTGCAGTCAAATGCTTATATTTTCA 58.913 29.630 3.96 0.00 46.63 2.69
1850 2235 6.236017 TGATATCAACGAACACAAAACCTC 57.764 37.500 1.98 0.00 0.00 3.85
1855 2240 2.903798 ACGAACACAAAACCTCGGTAA 58.096 42.857 0.00 0.00 35.64 2.85
1858 2243 4.050553 CGAACACAAAACCTCGGTAACTA 58.949 43.478 0.00 0.00 0.00 2.24
1859 2244 4.687483 CGAACACAAAACCTCGGTAACTAT 59.313 41.667 0.00 0.00 0.00 2.12
1908 2295 7.012607 ACAATAGGCCAAGGATATATTTTGCT 58.987 34.615 5.01 2.82 0.00 3.91
1957 2344 8.704849 TTCATGAATCTTTTGTTCTAAAGGGA 57.295 30.769 3.38 0.00 36.12 4.20
1983 2370 6.347240 CCGAATTAGCATGCTATTTCTCTCAC 60.347 42.308 35.88 22.37 37.04 3.51
1990 2377 5.051374 GCATGCTATTTCTCTCACTCGTAAC 60.051 44.000 11.37 0.00 0.00 2.50
1992 2379 5.399858 TGCTATTTCTCTCACTCGTAACAC 58.600 41.667 0.00 0.00 0.00 3.32
2098 2486 5.669477 TGCCTTTTACTGCTTGATGTTTTT 58.331 33.333 0.00 0.00 0.00 1.94
2176 2568 3.649073 CACTGTTGTGACTGTATCGGAA 58.351 45.455 0.00 0.00 46.55 4.30
2314 2706 3.897505 CAATGTTTTTGTTCCTCTCCCCT 59.102 43.478 0.00 0.00 0.00 4.79
2425 2817 9.208022 CTTTACATGTCTCATGACTAGTGAAAA 57.792 33.333 15.25 0.00 43.29 2.29
2428 2820 8.037382 ACATGTCTCATGACTAGTGAAAATTG 57.963 34.615 15.25 0.00 43.29 2.32
2442 2834 9.681692 CTAGTGAAAATTGATTTGTGACATGAA 57.318 29.630 0.00 0.00 0.00 2.57
2497 2889 7.991084 TGTCATTTGTTTCAGATTGAGATCT 57.009 32.000 0.00 0.00 43.43 2.75
2544 2936 7.092079 TCAATAGCATCATGTCCAACAAAAAG 58.908 34.615 0.00 0.00 0.00 2.27
2586 2978 7.151308 ACGATGAGATGAAGGTCTGATAATTC 58.849 38.462 0.00 0.00 0.00 2.17
2594 2986 9.388506 GATGAAGGTCTGATAATTCTTGAGAAA 57.611 33.333 0.00 0.00 37.61 2.52
2639 3031 1.300931 GTGAGAGGCAGCACGAACA 60.301 57.895 0.00 0.00 0.00 3.18
2702 3094 4.263639 GGAGGGATGGATCATATCTTTGCA 60.264 45.833 8.53 0.00 0.00 4.08
2734 3126 3.018149 ACTAAGATGTGTCTCGTCTCCC 58.982 50.000 0.00 0.00 41.07 4.30
2745 3137 4.773674 TGTCTCGTCTCCCCTTAATTGTTA 59.226 41.667 0.00 0.00 0.00 2.41
2775 3167 3.648339 TCCAGCTCAAATCTGCAAAAC 57.352 42.857 0.00 0.00 0.00 2.43
2840 3233 9.453572 TGATGAAATGTACTTAGAATTCTTGCT 57.546 29.630 14.36 0.00 0.00 3.91
2841 3234 9.713740 GATGAAATGTACTTAGAATTCTTGCTG 57.286 33.333 14.36 4.43 0.00 4.41
2889 3282 5.433526 AGCACCTTACTTTTCAGTGTGTTA 58.566 37.500 0.00 0.00 34.06 2.41
2946 3339 9.128404 ACATGCAAATCAGTACTATGATCAATT 57.872 29.630 0.00 0.00 39.00 2.32
3008 3401 8.033038 GGTTTGATGGTTTTTCCTTACTTATCC 58.967 37.037 0.00 0.00 37.07 2.59
3010 3403 6.478129 TGATGGTTTTTCCTTACTTATCCGT 58.522 36.000 0.00 0.00 37.07 4.69
3052 3446 6.402658 CCTCTAGTCCAAAAGCTTTTCGATTC 60.403 42.308 21.45 9.81 0.00 2.52
3070 3464 6.318628 TCGATTCATTTGTTTTTACCATCCG 58.681 36.000 0.00 0.00 0.00 4.18
3081 3475 2.877097 TACCATCCGCCATGCATTAT 57.123 45.000 0.00 0.00 0.00 1.28
3111 3505 5.899120 AATGGATCGTACTATGTAGCGAT 57.101 39.130 11.69 11.69 45.16 4.58
3118 3512 3.611766 CGTACTATGTAGCGATGCCACAT 60.612 47.826 7.88 7.88 36.82 3.21
3137 3531 1.438651 TCATGGTCTTACGTTGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
3147 3541 0.104120 ACGTTGCAGCACACACTCTA 59.896 50.000 0.00 0.00 0.00 2.43
3159 3553 7.020602 CAGCACACACTCTATATATTCTCTCG 58.979 42.308 0.00 0.00 0.00 4.04
3183 3577 2.352960 GGAATGAGCTGCGAAAAGGTAG 59.647 50.000 0.00 0.00 0.00 3.18
3186 3580 3.120321 TGAGCTGCGAAAAGGTAGAAA 57.880 42.857 0.00 0.00 0.00 2.52
3189 3583 1.807142 GCTGCGAAAAGGTAGAAAGCT 59.193 47.619 0.00 0.00 34.01 3.74
3253 3647 2.814805 ATGCATGCTCCCAACTACTT 57.185 45.000 20.33 0.00 0.00 2.24
3277 3671 4.458295 GCACATTGGATTCTAGCTATGCAT 59.542 41.667 3.79 3.79 0.00 3.96
3281 3675 2.641321 TGGATTCTAGCTATGCATGGCT 59.359 45.455 35.44 35.44 46.73 4.75
3331 3725 3.380637 GCATCTCCATTGAGTGCATTCTT 59.619 43.478 10.82 0.00 41.36 2.52
3424 3831 2.042464 CTAGGTTGGCTCTCCTATGCA 58.958 52.381 0.00 0.00 36.00 3.96
3425 3832 0.543749 AGGTTGGCTCTCCTATGCAC 59.456 55.000 0.00 0.00 31.66 4.57
3426 3833 0.253044 GGTTGGCTCTCCTATGCACA 59.747 55.000 0.00 0.00 0.00 4.57
3427 3834 1.373570 GTTGGCTCTCCTATGCACAC 58.626 55.000 0.00 0.00 0.00 3.82
3428 3835 1.065854 GTTGGCTCTCCTATGCACACT 60.066 52.381 0.00 0.00 0.00 3.55
3429 3836 2.159179 TGGCTCTCCTATGCACACTA 57.841 50.000 0.00 0.00 0.00 2.74
3430 3837 1.757118 TGGCTCTCCTATGCACACTAC 59.243 52.381 0.00 0.00 0.00 2.73
3431 3838 1.757118 GGCTCTCCTATGCACACTACA 59.243 52.381 0.00 0.00 0.00 2.74
3432 3839 2.168521 GGCTCTCCTATGCACACTACAA 59.831 50.000 0.00 0.00 0.00 2.41
3433 3840 3.369471 GGCTCTCCTATGCACACTACAAA 60.369 47.826 0.00 0.00 0.00 2.83
3434 3841 4.253685 GCTCTCCTATGCACACTACAAAA 58.746 43.478 0.00 0.00 0.00 2.44
3435 3842 4.695455 GCTCTCCTATGCACACTACAAAAA 59.305 41.667 0.00 0.00 0.00 1.94
3457 3864 6.583912 AAAATACACTTCCGTGATGATACG 57.416 37.500 0.00 0.00 43.97 3.06
3458 3865 4.913335 ATACACTTCCGTGATGATACGT 57.087 40.909 0.00 0.00 43.97 3.57
3459 3866 2.876091 ACACTTCCGTGATGATACGTG 58.124 47.619 0.00 0.00 43.97 4.49
3460 3867 2.230508 ACACTTCCGTGATGATACGTGT 59.769 45.455 0.00 0.00 43.97 4.49
3461 3868 3.250744 CACTTCCGTGATGATACGTGTT 58.749 45.455 0.00 0.00 43.97 3.32
3462 3869 3.678072 CACTTCCGTGATGATACGTGTTT 59.322 43.478 0.00 0.00 43.97 2.83
3463 3870 3.678072 ACTTCCGTGATGATACGTGTTTG 59.322 43.478 0.00 0.00 42.24 2.93
3464 3871 3.306917 TCCGTGATGATACGTGTTTGT 57.693 42.857 0.00 0.00 42.24 2.83
3465 3872 3.247442 TCCGTGATGATACGTGTTTGTC 58.753 45.455 0.00 0.00 42.24 3.18
3466 3873 2.990514 CCGTGATGATACGTGTTTGTCA 59.009 45.455 0.00 0.00 42.24 3.58
3467 3874 3.181534 CCGTGATGATACGTGTTTGTCAC 60.182 47.826 0.00 6.93 42.24 3.67
3468 3875 3.427193 CGTGATGATACGTGTTTGTCACA 59.573 43.478 18.33 0.60 46.44 3.58
3469 3876 4.432892 CGTGATGATACGTGTTTGTCACAG 60.433 45.833 18.33 11.29 46.44 3.66
3470 3877 4.447724 GTGATGATACGTGTTTGTCACAGT 59.552 41.667 15.50 0.00 46.44 3.55
3471 3878 5.631929 GTGATGATACGTGTTTGTCACAGTA 59.368 40.000 15.50 0.00 46.44 2.74
3472 3879 5.861787 TGATGATACGTGTTTGTCACAGTAG 59.138 40.000 0.00 0.00 46.44 2.57
3473 3880 4.552355 TGATACGTGTTTGTCACAGTAGG 58.448 43.478 0.00 0.00 46.44 3.18
3474 3881 2.973694 ACGTGTTTGTCACAGTAGGT 57.026 45.000 0.00 0.00 46.44 3.08
3475 3882 2.817901 ACGTGTTTGTCACAGTAGGTC 58.182 47.619 0.00 0.00 46.44 3.85
3476 3883 2.166870 ACGTGTTTGTCACAGTAGGTCA 59.833 45.455 0.00 0.00 46.44 4.02
3477 3884 2.538449 CGTGTTTGTCACAGTAGGTCAC 59.462 50.000 0.00 0.00 46.44 3.67
3478 3885 2.538449 GTGTTTGTCACAGTAGGTCACG 59.462 50.000 0.00 0.00 45.51 4.35
3479 3886 2.166870 TGTTTGTCACAGTAGGTCACGT 59.833 45.455 0.00 0.00 0.00 4.49
3480 3887 3.192466 GTTTGTCACAGTAGGTCACGTT 58.808 45.455 0.00 0.00 0.00 3.99
3481 3888 3.530265 TTGTCACAGTAGGTCACGTTT 57.470 42.857 0.00 0.00 0.00 3.60
3482 3889 3.530265 TGTCACAGTAGGTCACGTTTT 57.470 42.857 0.00 0.00 0.00 2.43
3483 3890 3.864243 TGTCACAGTAGGTCACGTTTTT 58.136 40.909 0.00 0.00 0.00 1.94
3502 3909 5.718724 TTTTTGTCATGCATGTACATCCA 57.281 34.783 25.43 2.99 0.00 3.41
3503 3910 5.918426 TTTTGTCATGCATGTACATCCAT 57.082 34.783 25.43 6.44 0.00 3.41
3504 3911 4.904253 TTGTCATGCATGTACATCCATG 57.096 40.909 27.23 27.23 44.07 3.66
3505 3912 4.153673 TGTCATGCATGTACATCCATGA 57.846 40.909 30.25 30.25 43.99 3.07
3507 3914 3.132925 TCATGCATGTACATCCATGACG 58.867 45.455 30.25 12.42 43.99 4.35
3508 3915 2.977772 TGCATGTACATCCATGACGA 57.022 45.000 5.07 0.00 43.99 4.20
3509 3916 3.473923 TGCATGTACATCCATGACGAT 57.526 42.857 5.07 0.00 43.99 3.73
3510 3917 3.807553 TGCATGTACATCCATGACGATT 58.192 40.909 5.07 0.00 43.99 3.34
3511 3918 4.198530 TGCATGTACATCCATGACGATTT 58.801 39.130 5.07 0.00 43.99 2.17
3512 3919 4.639755 TGCATGTACATCCATGACGATTTT 59.360 37.500 5.07 0.00 43.99 1.82
3513 3920 5.819901 TGCATGTACATCCATGACGATTTTA 59.180 36.000 5.07 0.00 43.99 1.52
3514 3921 6.486320 TGCATGTACATCCATGACGATTTTAT 59.514 34.615 5.07 0.00 43.99 1.40
3515 3922 6.798476 GCATGTACATCCATGACGATTTTATG 59.202 38.462 5.07 0.00 43.99 1.90
3516 3923 7.307930 GCATGTACATCCATGACGATTTTATGA 60.308 37.037 5.07 0.00 43.99 2.15
3517 3924 7.477144 TGTACATCCATGACGATTTTATGAC 57.523 36.000 0.00 0.00 0.00 3.06
3518 3925 7.044798 TGTACATCCATGACGATTTTATGACA 58.955 34.615 0.00 0.00 0.00 3.58
3519 3926 6.609237 ACATCCATGACGATTTTATGACAG 57.391 37.500 0.00 0.00 0.00 3.51
3520 3927 6.348498 ACATCCATGACGATTTTATGACAGA 58.652 36.000 0.00 0.00 0.00 3.41
3521 3928 6.823182 ACATCCATGACGATTTTATGACAGAA 59.177 34.615 0.00 0.00 0.00 3.02
3522 3929 7.500227 ACATCCATGACGATTTTATGACAGAAT 59.500 33.333 0.00 0.00 0.00 2.40
3523 3930 7.482654 TCCATGACGATTTTATGACAGAATC 57.517 36.000 0.00 0.00 0.00 2.52
3524 3931 7.047271 TCCATGACGATTTTATGACAGAATCA 58.953 34.615 0.00 0.00 43.13 2.57
3525 3932 7.552330 TCCATGACGATTTTATGACAGAATCAA 59.448 33.333 0.00 0.00 41.93 2.57
3526 3933 7.854422 CCATGACGATTTTATGACAGAATCAAG 59.146 37.037 0.00 0.00 41.93 3.02
3527 3934 8.606602 CATGACGATTTTATGACAGAATCAAGA 58.393 33.333 0.00 0.00 41.93 3.02
3528 3935 8.722480 TGACGATTTTATGACAGAATCAAGAT 57.278 30.769 0.00 0.00 41.93 2.40
3529 3936 9.816354 TGACGATTTTATGACAGAATCAAGATA 57.184 29.630 0.00 0.00 41.93 1.98
3531 3938 9.823647 ACGATTTTATGACAGAATCAAGATAGT 57.176 29.630 0.00 0.00 41.93 2.12
3538 3945 7.904558 TGACAGAATCAAGATAGTCATACCT 57.095 36.000 8.09 0.00 33.02 3.08
3539 3946 7.720442 TGACAGAATCAAGATAGTCATACCTG 58.280 38.462 8.09 0.00 33.02 4.00
3540 3947 7.343057 TGACAGAATCAAGATAGTCATACCTGT 59.657 37.037 0.00 0.00 33.02 4.00
3541 3948 7.495901 ACAGAATCAAGATAGTCATACCTGTG 58.504 38.462 0.00 0.00 0.00 3.66
3542 3949 6.423302 CAGAATCAAGATAGTCATACCTGTGC 59.577 42.308 0.00 0.00 0.00 4.57
3543 3950 6.326064 AGAATCAAGATAGTCATACCTGTGCT 59.674 38.462 0.00 0.00 0.00 4.40
3544 3951 5.268118 TCAAGATAGTCATACCTGTGCTG 57.732 43.478 0.00 0.00 0.00 4.41
3545 3952 4.711846 TCAAGATAGTCATACCTGTGCTGT 59.288 41.667 0.00 0.00 0.00 4.40
3546 3953 4.927978 AGATAGTCATACCTGTGCTGTC 57.072 45.455 0.00 0.00 0.00 3.51
3547 3954 3.316588 AGATAGTCATACCTGTGCTGTCG 59.683 47.826 0.00 0.00 0.00 4.35
3548 3955 1.257743 AGTCATACCTGTGCTGTCGT 58.742 50.000 0.00 0.00 0.00 4.34
3549 3956 2.443416 AGTCATACCTGTGCTGTCGTA 58.557 47.619 0.00 0.00 0.00 3.43
3550 3957 2.423892 AGTCATACCTGTGCTGTCGTAG 59.576 50.000 0.00 0.00 0.00 3.51
3551 3958 2.422479 GTCATACCTGTGCTGTCGTAGA 59.578 50.000 0.00 0.00 0.00 2.59
3552 3959 3.086282 TCATACCTGTGCTGTCGTAGAA 58.914 45.455 0.00 0.00 39.69 2.10
3553 3960 3.128764 TCATACCTGTGCTGTCGTAGAAG 59.871 47.826 0.00 0.00 39.69 2.85
3554 3961 1.329256 ACCTGTGCTGTCGTAGAAGT 58.671 50.000 0.00 0.00 39.69 3.01
3555 3962 1.000163 ACCTGTGCTGTCGTAGAAGTG 60.000 52.381 0.00 0.00 39.69 3.16
3556 3963 1.063806 CTGTGCTGTCGTAGAAGTGC 58.936 55.000 0.00 0.00 39.69 4.40
3557 3964 0.673985 TGTGCTGTCGTAGAAGTGCT 59.326 50.000 0.00 0.00 39.69 4.40
3558 3965 1.335964 TGTGCTGTCGTAGAAGTGCTC 60.336 52.381 0.00 0.00 39.69 4.26
3559 3966 0.243907 TGCTGTCGTAGAAGTGCTCC 59.756 55.000 0.00 0.00 39.69 4.70
3560 3967 0.243907 GCTGTCGTAGAAGTGCTCCA 59.756 55.000 0.00 0.00 39.69 3.86
3561 3968 1.134965 GCTGTCGTAGAAGTGCTCCAT 60.135 52.381 0.00 0.00 39.69 3.41
3562 3969 2.534298 CTGTCGTAGAAGTGCTCCATG 58.466 52.381 0.00 0.00 39.69 3.66
3563 3970 2.164422 CTGTCGTAGAAGTGCTCCATGA 59.836 50.000 0.00 0.00 39.69 3.07
3564 3971 2.094700 TGTCGTAGAAGTGCTCCATGAC 60.095 50.000 0.00 0.00 39.69 3.06
3565 3972 2.094700 GTCGTAGAAGTGCTCCATGACA 60.095 50.000 0.00 0.00 39.69 3.58
3566 3973 2.760650 TCGTAGAAGTGCTCCATGACAT 59.239 45.455 0.00 0.00 0.00 3.06
3567 3974 3.195610 TCGTAGAAGTGCTCCATGACATT 59.804 43.478 0.00 0.00 0.00 2.71
3568 3975 4.401202 TCGTAGAAGTGCTCCATGACATTA 59.599 41.667 0.00 0.00 0.00 1.90
3569 3976 4.504461 CGTAGAAGTGCTCCATGACATTAC 59.496 45.833 0.00 0.00 0.00 1.89
3570 3977 3.878778 AGAAGTGCTCCATGACATTACC 58.121 45.455 0.00 0.00 0.00 2.85
3571 3978 3.264193 AGAAGTGCTCCATGACATTACCA 59.736 43.478 0.00 0.00 0.00 3.25
3572 3979 3.719268 AGTGCTCCATGACATTACCAA 57.281 42.857 0.00 0.00 0.00 3.67
3573 3980 4.032960 AGTGCTCCATGACATTACCAAA 57.967 40.909 0.00 0.00 0.00 3.28
3574 3981 4.406456 AGTGCTCCATGACATTACCAAAA 58.594 39.130 0.00 0.00 0.00 2.44
3575 3982 5.018809 AGTGCTCCATGACATTACCAAAAT 58.981 37.500 0.00 0.00 0.00 1.82
3576 3983 5.481473 AGTGCTCCATGACATTACCAAAATT 59.519 36.000 0.00 0.00 0.00 1.82
3577 3984 6.663093 AGTGCTCCATGACATTACCAAAATTA 59.337 34.615 0.00 0.00 0.00 1.40
3578 3985 7.342799 AGTGCTCCATGACATTACCAAAATTAT 59.657 33.333 0.00 0.00 0.00 1.28
3579 3986 7.649306 GTGCTCCATGACATTACCAAAATTATC 59.351 37.037 0.00 0.00 0.00 1.75
3580 3987 7.341512 TGCTCCATGACATTACCAAAATTATCA 59.658 33.333 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.103861 AGAACTTTATTACTCAAATAGCAGAGC 57.896 33.333 0.00 0.00 35.28 4.09
110 451 6.693545 TCCAAAATGCTTAAGTGTTAACAACG 59.306 34.615 10.51 0.00 0.00 4.10
175 530 3.119673 GGACACACACAACACAATCAACA 60.120 43.478 0.00 0.00 0.00 3.33
187 542 1.673400 CATTCCAAACGGACACACACA 59.327 47.619 0.00 0.00 30.04 3.72
219 574 0.968405 CAAGCCTAGGCAAGCCAAAA 59.032 50.000 34.70 0.00 44.88 2.44
311 668 1.135575 GCCAAATCTTTCGCACTCCAG 60.136 52.381 0.00 0.00 0.00 3.86
312 669 0.881118 GCCAAATCTTTCGCACTCCA 59.119 50.000 0.00 0.00 0.00 3.86
313 670 0.179189 CGCCAAATCTTTCGCACTCC 60.179 55.000 0.00 0.00 0.00 3.85
314 671 0.517316 ACGCCAAATCTTTCGCACTC 59.483 50.000 0.00 0.00 0.00 3.51
315 672 0.238289 CACGCCAAATCTTTCGCACT 59.762 50.000 0.00 0.00 0.00 4.40
316 673 0.237235 TCACGCCAAATCTTTCGCAC 59.763 50.000 0.00 0.00 0.00 5.34
317 674 0.237235 GTCACGCCAAATCTTTCGCA 59.763 50.000 0.00 0.00 0.00 5.10
318 675 0.517316 AGTCACGCCAAATCTTTCGC 59.483 50.000 0.00 0.00 0.00 4.70
319 676 1.135972 CCAGTCACGCCAAATCTTTCG 60.136 52.381 0.00 0.00 0.00 3.46
320 677 1.880027 ACCAGTCACGCCAAATCTTTC 59.120 47.619 0.00 0.00 0.00 2.62
321 678 1.608590 CACCAGTCACGCCAAATCTTT 59.391 47.619 0.00 0.00 0.00 2.52
322 679 1.238439 CACCAGTCACGCCAAATCTT 58.762 50.000 0.00 0.00 0.00 2.40
323 680 0.606401 CCACCAGTCACGCCAAATCT 60.606 55.000 0.00 0.00 0.00 2.40
324 681 0.605319 TCCACCAGTCACGCCAAATC 60.605 55.000 0.00 0.00 0.00 2.17
325 682 0.606401 CTCCACCAGTCACGCCAAAT 60.606 55.000 0.00 0.00 0.00 2.32
326 683 1.227823 CTCCACCAGTCACGCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
359 732 8.052748 TGTGATATTATGCAAAGTTAGAAGGGT 58.947 33.333 0.00 0.00 0.00 4.34
423 796 5.766670 TGAATGGTCTCCATGAAGATTATGC 59.233 40.000 1.86 0.00 44.40 3.14
491 866 8.579863 CATTTTGAGAATAGTTTCTTTGGTCCT 58.420 33.333 0.00 0.00 42.34 3.85
566 941 2.205074 GATTTGCGATCCGTCATCACT 58.795 47.619 0.00 0.00 0.00 3.41
571 946 2.502213 ATACGATTTGCGATCCGTCA 57.498 45.000 4.66 0.00 44.57 4.35
621 996 6.066054 TGCGACACATTAACTTTCAAATCA 57.934 33.333 0.00 0.00 0.00 2.57
631 1008 4.090729 CACACATCATGCGACACATTAAC 58.909 43.478 0.00 0.00 36.64 2.01
641 1018 0.729116 GGAACCTCACACATCATGCG 59.271 55.000 0.00 0.00 0.00 4.73
718 1102 3.197092 TGTGGATGCATGCGCTCG 61.197 61.111 28.46 0.00 39.64 5.03
722 1106 0.589708 CATAGGTGTGGATGCATGCG 59.410 55.000 14.09 0.00 0.00 4.73
853 1237 1.521906 CGTTTGTGTGGTCACCCGA 60.522 57.895 0.00 0.00 43.26 5.14
882 1266 1.609501 ACTAGAAGCCTGGCACCGA 60.610 57.895 22.65 7.18 0.00 4.69
923 1307 4.944372 CGCGAGTGGATACCCGGC 62.944 72.222 0.00 0.00 34.29 6.13
938 1322 1.748493 ACAATGAGAGAGAGAGGTCGC 59.252 52.381 0.00 0.00 0.00 5.19
1058 1442 2.365635 CCTCCGACTCCCCCATGT 60.366 66.667 0.00 0.00 0.00 3.21
1117 1501 1.684049 CCTCCTTCTCCTCAGGCGT 60.684 63.158 0.00 0.00 0.00 5.68
1185 1569 2.801631 CGCCTCCACCTCCATCTCC 61.802 68.421 0.00 0.00 0.00 3.71
1320 1704 8.095452 ACTATCCTAGTTCTGTTCCAAATCAT 57.905 34.615 0.00 0.00 34.86 2.45
1355 1739 7.830099 AAAATTACCCATTTTTGCATGGAAA 57.170 28.000 8.47 8.47 46.18 3.13
1482 1866 9.273016 TCACTCAGTTTTTCTTACATAAAGGAG 57.727 33.333 0.00 0.00 35.75 3.69
1502 1886 6.030849 CGTGTTTGTATTTGGTTTTCACTCA 58.969 36.000 0.00 0.00 0.00 3.41
1506 1890 7.273815 GTCTTTCGTGTTTGTATTTGGTTTTCA 59.726 33.333 0.00 0.00 0.00 2.69
1620 2005 3.230990 GGTTTTGGGCCTTGGCGT 61.231 61.111 4.53 0.00 0.00 5.68
1664 2049 6.240549 ACCCATTGTTAATGTGAACCAAAA 57.759 33.333 0.00 0.00 37.18 2.44
1669 2054 4.023536 ACACGACCCATTGTTAATGTGAAC 60.024 41.667 0.00 0.00 37.18 3.18
1683 2068 0.393132 TTTGACTGCAACACGACCCA 60.393 50.000 0.00 0.00 32.79 4.51
1716 2101 8.980596 TCATTGATTGGCCATTTTCTAAACTAT 58.019 29.630 6.09 0.00 0.00 2.12
1836 2221 2.867975 AGTTACCGAGGTTTTGTGTTCG 59.132 45.455 0.00 0.00 0.00 3.95
1878 2265 8.405971 AATATATCCTTGGCCTATTGTCCATA 57.594 34.615 3.32 0.00 31.54 2.74
1908 2295 9.691362 GAAATTTCAATGCCAAGAAGTAAACTA 57.309 29.630 13.40 0.00 0.00 2.24
1957 2344 5.615289 AGAGAAATAGCATGCTAATTCGGT 58.385 37.500 33.93 26.52 41.07 4.69
1983 2370 1.937223 TGCAACCAACAGTGTTACGAG 59.063 47.619 8.49 0.99 0.00 4.18
1990 2377 1.873591 GTACCTCTGCAACCAACAGTG 59.126 52.381 0.00 0.00 36.50 3.66
1992 2379 2.254546 TGTACCTCTGCAACCAACAG 57.745 50.000 0.00 0.00 36.44 3.16
2098 2486 7.701539 ACATAGCCAACAATGAAGATTAACA 57.298 32.000 0.00 0.00 0.00 2.41
2176 2568 4.081476 GCCAAGCCATTGTTCTTTAGGATT 60.081 41.667 0.00 0.00 34.39 3.01
2284 2676 9.706846 GAGAGGAACAAAAACATTGAAAAATTG 57.293 29.630 0.00 0.00 0.00 2.32
2290 2682 4.343814 GGGGAGAGGAACAAAAACATTGAA 59.656 41.667 0.00 0.00 0.00 2.69
2297 2689 2.516277 TGGAAGGGGAGAGGAACAAAAA 59.484 45.455 0.00 0.00 0.00 1.94
2314 2706 3.840078 TGTTGATGTCAGGATCTCTGGAA 59.160 43.478 10.23 1.98 43.53 3.53
2442 2834 8.716674 AGATAATGAAGGTTTTATGCATGGAT 57.283 30.769 10.16 4.68 0.00 3.41
2497 2889 6.054941 TGAAGTTCTCTGATTTACACAGCAA 58.945 36.000 4.17 0.00 35.61 3.91
2544 2936 2.536365 TCGTCAACAGACTTGTGTGAC 58.464 47.619 4.91 10.32 39.39 3.67
2586 2978 7.439655 GCATAGTGGTATCTACCTTTTCTCAAG 59.560 40.741 7.84 0.00 46.58 3.02
2594 2986 4.348168 CCCAAGCATAGTGGTATCTACCTT 59.652 45.833 7.84 0.00 46.58 3.50
2639 3031 9.448587 AGGTACCCTAATTACTACTGAATCAAT 57.551 33.333 8.74 0.00 28.47 2.57
2702 3094 6.000219 AGACACATCTTAGTTGAATGCACTT 59.000 36.000 0.00 0.00 0.00 3.16
2714 3106 2.359531 GGGGAGACGAGACACATCTTAG 59.640 54.545 0.00 0.00 34.34 2.18
2716 3108 1.187087 GGGGAGACGAGACACATCTT 58.813 55.000 0.00 0.00 34.34 2.40
2734 3126 7.064728 GCTGGAACACTAGAGTAACAATTAAGG 59.935 40.741 0.00 0.00 0.00 2.69
2745 3137 4.530161 AGATTTGAGCTGGAACACTAGAGT 59.470 41.667 0.00 0.00 0.00 3.24
2775 3167 5.597813 CAACTAGTTGTAAGGAGTTGCAG 57.402 43.478 24.70 0.00 41.52 4.41
2838 3231 4.081917 GGAATACTATCTCCAGCCTACAGC 60.082 50.000 0.00 0.00 44.25 4.40
2840 3233 5.340891 AGGAATACTATCTCCAGCCTACA 57.659 43.478 0.00 0.00 33.83 2.74
2841 3234 7.176490 TCTTAGGAATACTATCTCCAGCCTAC 58.824 42.308 0.00 0.00 33.83 3.18
2889 3282 5.619086 GCTTCGTTACATGCACAAAAGGTAT 60.619 40.000 0.00 0.00 0.00 2.73
2946 3339 9.915629 AAGTACAACTTTGAAAACATTACAACA 57.084 25.926 0.00 0.00 34.11 3.33
3031 3424 6.817765 ATGAATCGAAAAGCTTTTGGACTA 57.182 33.333 30.97 21.91 37.64 2.59
3052 3446 3.919216 TGGCGGATGGTAAAAACAAATG 58.081 40.909 0.00 0.00 0.00 2.32
3106 3500 4.152644 CCATGATGTGGCATCGCT 57.847 55.556 0.00 0.00 42.12 4.93
3118 3512 1.270571 TGCTGCAACGTAAGACCATGA 60.271 47.619 0.00 0.00 43.62 3.07
3130 3524 6.703607 AGAATATATAGAGTGTGTGCTGCAAC 59.296 38.462 2.77 5.97 0.00 4.17
3159 3553 2.159462 CCTTTTCGCAGCTCATTCCTTC 60.159 50.000 0.00 0.00 0.00 3.46
3183 3577 4.540824 AGCGAATTTTCTCAACAGCTTTC 58.459 39.130 0.00 0.00 0.00 2.62
3186 3580 3.126000 GCTAGCGAATTTTCTCAACAGCT 59.874 43.478 0.00 0.00 37.48 4.24
3189 3583 3.188460 GGTGCTAGCGAATTTTCTCAACA 59.812 43.478 10.77 0.00 0.00 3.33
3253 3647 3.817084 GCATAGCTAGAATCCAATGTGCA 59.183 43.478 0.00 0.00 0.00 4.57
3277 3671 3.994204 CATGCATGCATTTACTAGCCA 57.006 42.857 30.32 0.00 33.90 4.75
3331 3725 8.844865 ACTAATATGGAGCATGATAGTATGGA 57.155 34.615 0.00 0.00 30.51 3.41
3385 3779 5.543790 ACCTAGCAGTCCCATTTTCAAAAAT 59.456 36.000 0.00 0.00 39.07 1.82
3403 3810 1.270571 GCATAGGAGAGCCAACCTAGC 60.271 57.143 0.00 0.00 41.24 3.42
3442 3849 3.678072 ACAAACACGTATCATCACGGAAG 59.322 43.478 0.00 0.00 46.12 3.46
3443 3850 3.655486 ACAAACACGTATCATCACGGAA 58.345 40.909 0.00 0.00 46.12 4.30
3444 3851 3.247442 GACAAACACGTATCATCACGGA 58.753 45.455 0.00 0.00 46.12 4.69
3445 3852 2.990514 TGACAAACACGTATCATCACGG 59.009 45.455 0.00 0.00 46.12 4.94
3458 3865 2.166870 ACGTGACCTACTGTGACAAACA 59.833 45.455 0.00 0.00 37.22 2.83
3459 3866 2.817901 ACGTGACCTACTGTGACAAAC 58.182 47.619 0.00 0.00 29.33 2.93
3460 3867 3.530265 AACGTGACCTACTGTGACAAA 57.470 42.857 0.00 0.00 29.33 2.83
3461 3868 3.530265 AAACGTGACCTACTGTGACAA 57.470 42.857 0.00 0.00 29.33 3.18
3462 3869 3.530265 AAAACGTGACCTACTGTGACA 57.470 42.857 0.00 0.00 29.33 3.58
3480 3887 5.718724 TGGATGTACATGCATGACAAAAA 57.281 34.783 32.75 16.53 34.14 1.94
3481 3888 5.918426 ATGGATGTACATGCATGACAAAA 57.082 34.783 33.87 18.90 46.05 2.44
3489 3896 2.977772 TCGTCATGGATGTACATGCA 57.022 45.000 29.03 29.03 46.02 3.96
3490 3897 4.818534 AAATCGTCATGGATGTACATGC 57.181 40.909 19.53 19.53 46.02 4.06
3492 3899 7.714813 TGTCATAAAATCGTCATGGATGTACAT 59.285 33.333 8.43 8.43 0.00 2.29
3493 3900 7.044798 TGTCATAAAATCGTCATGGATGTACA 58.955 34.615 0.00 0.00 0.00 2.90
3494 3901 7.438160 TCTGTCATAAAATCGTCATGGATGTAC 59.562 37.037 0.00 0.00 0.00 2.90
3495 3902 7.496747 TCTGTCATAAAATCGTCATGGATGTA 58.503 34.615 0.00 0.00 0.00 2.29
3496 3903 6.348498 TCTGTCATAAAATCGTCATGGATGT 58.652 36.000 0.00 0.00 0.00 3.06
3497 3904 6.849588 TCTGTCATAAAATCGTCATGGATG 57.150 37.500 0.00 0.00 0.00 3.51
3498 3905 7.716560 TGATTCTGTCATAAAATCGTCATGGAT 59.283 33.333 0.00 0.00 33.13 3.41
3499 3906 7.047271 TGATTCTGTCATAAAATCGTCATGGA 58.953 34.615 0.00 0.00 33.13 3.41
3500 3907 7.250445 TGATTCTGTCATAAAATCGTCATGG 57.750 36.000 0.00 0.00 33.13 3.66
3501 3908 8.606602 TCTTGATTCTGTCATAAAATCGTCATG 58.393 33.333 0.00 0.00 36.54 3.07
3502 3909 8.722480 TCTTGATTCTGTCATAAAATCGTCAT 57.278 30.769 0.00 0.00 36.54 3.06
3503 3910 8.722480 ATCTTGATTCTGTCATAAAATCGTCA 57.278 30.769 0.00 0.00 36.54 4.35
3505 3912 9.823647 ACTATCTTGATTCTGTCATAAAATCGT 57.176 29.630 0.00 0.00 36.54 3.73
3512 3919 9.593565 AGGTATGACTATCTTGATTCTGTCATA 57.406 33.333 18.29 18.29 42.64 2.15
3513 3920 8.366401 CAGGTATGACTATCTTGATTCTGTCAT 58.634 37.037 19.47 19.47 44.19 3.06
3514 3921 7.343057 ACAGGTATGACTATCTTGATTCTGTCA 59.657 37.037 12.36 12.36 38.52 3.58
3515 3922 7.651304 CACAGGTATGACTATCTTGATTCTGTC 59.349 40.741 0.00 0.00 0.00 3.51
3516 3923 7.495901 CACAGGTATGACTATCTTGATTCTGT 58.504 38.462 0.00 0.00 0.00 3.41
3517 3924 6.423302 GCACAGGTATGACTATCTTGATTCTG 59.577 42.308 0.00 0.00 0.00 3.02
3518 3925 6.326064 AGCACAGGTATGACTATCTTGATTCT 59.674 38.462 0.00 0.00 0.00 2.40
3519 3926 6.423302 CAGCACAGGTATGACTATCTTGATTC 59.577 42.308 0.00 0.00 0.00 2.52
3520 3927 6.126940 ACAGCACAGGTATGACTATCTTGATT 60.127 38.462 0.00 0.00 0.00 2.57
3521 3928 5.365025 ACAGCACAGGTATGACTATCTTGAT 59.635 40.000 0.00 0.00 0.00 2.57
3522 3929 4.711846 ACAGCACAGGTATGACTATCTTGA 59.288 41.667 0.00 0.00 0.00 3.02
3523 3930 5.016051 ACAGCACAGGTATGACTATCTTG 57.984 43.478 0.00 0.00 0.00 3.02
3524 3931 4.202060 CGACAGCACAGGTATGACTATCTT 60.202 45.833 0.00 0.00 0.00 2.40
3525 3932 3.316588 CGACAGCACAGGTATGACTATCT 59.683 47.826 0.00 0.00 0.00 1.98
3526 3933 3.066900 ACGACAGCACAGGTATGACTATC 59.933 47.826 0.00 0.00 0.00 2.08
3527 3934 3.024547 ACGACAGCACAGGTATGACTAT 58.975 45.455 0.00 0.00 0.00 2.12
3528 3935 2.443416 ACGACAGCACAGGTATGACTA 58.557 47.619 0.00 0.00 0.00 2.59
3529 3936 1.257743 ACGACAGCACAGGTATGACT 58.742 50.000 0.00 0.00 0.00 3.41
3530 3937 2.422479 TCTACGACAGCACAGGTATGAC 59.578 50.000 0.00 0.00 0.00 3.06
3531 3938 2.718563 TCTACGACAGCACAGGTATGA 58.281 47.619 0.00 0.00 0.00 2.15
3532 3939 3.119459 ACTTCTACGACAGCACAGGTATG 60.119 47.826 0.00 0.00 0.00 2.39
3533 3940 3.090037 ACTTCTACGACAGCACAGGTAT 58.910 45.455 0.00 0.00 0.00 2.73
3534 3941 2.228103 CACTTCTACGACAGCACAGGTA 59.772 50.000 0.00 0.00 0.00 3.08
3535 3942 1.000163 CACTTCTACGACAGCACAGGT 60.000 52.381 0.00 0.00 0.00 4.00
3536 3943 1.702886 CACTTCTACGACAGCACAGG 58.297 55.000 0.00 0.00 0.00 4.00
3537 3944 1.063806 GCACTTCTACGACAGCACAG 58.936 55.000 0.00 0.00 0.00 3.66
3538 3945 0.673985 AGCACTTCTACGACAGCACA 59.326 50.000 0.00 0.00 0.00 4.57
3539 3946 1.341606 GAGCACTTCTACGACAGCAC 58.658 55.000 0.00 0.00 0.00 4.40
3540 3947 0.243907 GGAGCACTTCTACGACAGCA 59.756 55.000 0.00 0.00 0.00 4.41
3541 3948 0.243907 TGGAGCACTTCTACGACAGC 59.756 55.000 0.00 0.00 0.00 4.40
3542 3949 2.164422 TCATGGAGCACTTCTACGACAG 59.836 50.000 0.00 0.00 0.00 3.51
3543 3950 2.094700 GTCATGGAGCACTTCTACGACA 60.095 50.000 0.00 0.00 0.00 4.35
3544 3951 2.094700 TGTCATGGAGCACTTCTACGAC 60.095 50.000 0.00 0.00 0.00 4.34
3545 3952 2.167662 TGTCATGGAGCACTTCTACGA 58.832 47.619 0.00 0.00 0.00 3.43
3546 3953 2.654749 TGTCATGGAGCACTTCTACG 57.345 50.000 0.00 0.00 0.00 3.51
3547 3954 4.811557 GGTAATGTCATGGAGCACTTCTAC 59.188 45.833 0.00 0.00 0.00 2.59
3548 3955 4.469586 TGGTAATGTCATGGAGCACTTCTA 59.530 41.667 0.00 0.00 0.00 2.10
3549 3956 3.264193 TGGTAATGTCATGGAGCACTTCT 59.736 43.478 0.00 0.00 0.00 2.85
3550 3957 3.609853 TGGTAATGTCATGGAGCACTTC 58.390 45.455 0.00 0.00 0.00 3.01
3551 3958 3.719268 TGGTAATGTCATGGAGCACTT 57.281 42.857 0.00 0.00 0.00 3.16
3552 3959 3.719268 TTGGTAATGTCATGGAGCACT 57.281 42.857 0.00 0.00 0.00 4.40
3553 3960 4.782019 TTTTGGTAATGTCATGGAGCAC 57.218 40.909 0.00 0.00 0.00 4.40
3554 3961 5.999205 AATTTTGGTAATGTCATGGAGCA 57.001 34.783 0.00 0.00 0.00 4.26
3555 3962 7.715657 TGATAATTTTGGTAATGTCATGGAGC 58.284 34.615 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.