Multiple sequence alignment - TraesCS3B01G470400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G470400 chr3B 100.000 4062 0 0 1 4062 718685777 718689838 0.000000e+00 7502
1 TraesCS3B01G470400 chr3B 95.942 345 14 0 1 345 296061259 296060915 9.860000e-156 560
2 TraesCS3B01G470400 chr3B 92.806 139 8 2 3629 3765 718689243 718689381 2.480000e-47 200
3 TraesCS3B01G470400 chr3B 92.806 139 8 2 3467 3605 718689405 718689541 2.480000e-47 200
4 TraesCS3B01G470400 chr3A 97.887 2177 39 4 1892 4062 679505386 679507561 0.000000e+00 3759
5 TraesCS3B01G470400 chr3A 92.862 1569 73 17 346 1883 679503728 679505288 0.000000e+00 2241
6 TraesCS3B01G470400 chr3A 97.101 345 10 0 1 345 40287372 40287028 2.100000e-162 582
7 TraesCS3B01G470400 chr3A 85.558 547 47 12 346 883 657119002 657119525 9.930000e-151 544
8 TraesCS3B01G470400 chr3A 92.086 139 9 2 3629 3765 679506964 679507102 1.150000e-45 195
9 TraesCS3B01G470400 chr3A 92.086 139 9 2 3467 3605 679507126 679507262 1.150000e-45 195
10 TraesCS3B01G470400 chr3A 93.182 88 6 0 926 1013 657119519 657119606 3.290000e-26 130
11 TraesCS3B01G470400 chr3D 88.328 1585 120 29 346 1901 542821770 542823318 0.000000e+00 1842
12 TraesCS3B01G470400 chr3D 90.881 987 66 13 2501 3468 542823755 542824736 0.000000e+00 1303
13 TraesCS3B01G470400 chr3D 91.803 610 33 9 3467 4062 542824772 542825378 0.000000e+00 833
14 TraesCS3B01G470400 chr3D 90.845 142 12 1 3625 3765 542824768 542824909 5.360000e-44 189
15 TraesCS3B01G470400 chr3D 90.647 139 10 3 3467 3605 542824933 542825068 8.970000e-42 182
16 TraesCS3B01G470400 chr7B 92.974 1224 72 6 346 1569 598608553 598609762 0.000000e+00 1772
17 TraesCS3B01G470400 chr7B 92.747 1227 72 7 346 1569 598640796 598642008 0.000000e+00 1757
18 TraesCS3B01G470400 chr7B 91.849 822 46 7 346 1167 644928494 644929294 0.000000e+00 1127
19 TraesCS3B01G470400 chr7B 94.037 654 27 4 346 990 643745215 643745865 0.000000e+00 981
20 TraesCS3B01G470400 chr7B 91.343 670 33 9 1323 1990 598930815 598931461 0.000000e+00 893
21 TraesCS3B01G470400 chr7B 91.071 672 35 9 1321 1990 643752636 643753284 0.000000e+00 885
22 TraesCS3B01G470400 chr7B 95.707 396 16 1 2022 2417 598649862 598650256 1.590000e-178 636
23 TraesCS3B01G470400 chr7B 95.202 396 18 1 2022 2417 598617636 598618030 3.450000e-175 625
24 TraesCS3B01G470400 chr7B 94.192 396 22 1 2022 2417 598931541 598931935 1.620000e-168 603
25 TraesCS3B01G470400 chr7B 94.192 396 21 2 2022 2417 644945970 644946363 1.620000e-168 603
26 TraesCS3B01G470400 chr7B 92.272 427 21 2 346 766 598923467 598923887 2.700000e-166 595
27 TraesCS3B01G470400 chr7B 92.677 396 28 1 2022 2417 643753364 643753758 1.640000e-158 569
28 TraesCS3B01G470400 chr7B 95.335 343 16 0 6 348 592741498 592741156 2.760000e-151 545
29 TraesCS3B01G470400 chr7B 94.828 348 18 0 978 1325 598925025 598925372 9.930000e-151 544
30 TraesCS3B01G470400 chr7B 93.391 348 22 1 978 1325 643746852 643747198 7.790000e-142 514
31 TraesCS3B01G470400 chr7B 95.899 317 12 1 1253 1569 644938411 644938726 2.800000e-141 512
32 TraesCS3B01G470400 chr7B 89.044 429 22 9 1561 1987 598617160 598617565 3.620000e-140 508
33 TraesCS3B01G470400 chr7B 88.578 429 24 9 1561 1987 598649386 598649791 7.840000e-137 497
34 TraesCS3B01G470400 chr7B 86.574 432 33 9 1561 1990 644945483 644945891 1.720000e-123 453
35 TraesCS3B01G470400 chr7B 91.566 166 7 2 827 989 598923887 598924048 5.280000e-54 222
36 TraesCS3B01G470400 chr1A 84.759 643 52 16 346 974 497962089 497961479 1.620000e-168 603
37 TraesCS3B01G470400 chr1D 86.871 556 43 10 346 887 402721656 402721117 2.700000e-166 595
38 TraesCS3B01G470400 chr2D 96.275 349 12 1 1 348 591541044 591540696 4.550000e-159 571
39 TraesCS3B01G470400 chr4B 95.954 346 14 0 1 346 14570921 14570576 2.740000e-156 562
40 TraesCS3B01G470400 chr4B 95.575 339 15 0 7 345 80008070 80007732 9.930000e-151 544
41 TraesCS3B01G470400 chr2A 95.362 345 16 0 1 345 570149046 570148702 2.130000e-152 549
42 TraesCS3B01G470400 chr5A 95.349 344 16 0 1 344 585421928 585421585 7.680000e-152 547
43 TraesCS3B01G470400 chr5B 93.820 356 21 1 1 355 599326721 599327076 5.980000e-148 534


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G470400 chr3B 718685777 718689838 4061 False 2634.000000 7502 95.204000 1 4062 3 chr3B.!!$F1 4061
1 TraesCS3B01G470400 chr3A 679503728 679507561 3833 False 1597.500000 3759 93.730250 346 4062 4 chr3A.!!$F2 3716
2 TraesCS3B01G470400 chr3A 657119002 657119606 604 False 337.000000 544 89.370000 346 1013 2 chr3A.!!$F1 667
3 TraesCS3B01G470400 chr3D 542821770 542825378 3608 False 869.800000 1842 90.500800 346 4062 5 chr3D.!!$F1 3716
4 TraesCS3B01G470400 chr7B 598608553 598609762 1209 False 1772.000000 1772 92.974000 346 1569 1 chr7B.!!$F1 1223
5 TraesCS3B01G470400 chr7B 598640796 598642008 1212 False 1757.000000 1757 92.747000 346 1569 1 chr7B.!!$F2 1223
6 TraesCS3B01G470400 chr7B 644928494 644929294 800 False 1127.000000 1127 91.849000 346 1167 1 chr7B.!!$F3 821
7 TraesCS3B01G470400 chr7B 598930815 598931935 1120 False 748.000000 893 92.767500 1323 2417 2 chr7B.!!$F8 1094
8 TraesCS3B01G470400 chr7B 643745215 643747198 1983 False 747.500000 981 93.714000 346 1325 2 chr7B.!!$F9 979
9 TraesCS3B01G470400 chr7B 643752636 643753758 1122 False 727.000000 885 91.874000 1321 2417 2 chr7B.!!$F10 1096
10 TraesCS3B01G470400 chr7B 598617160 598618030 870 False 566.500000 625 92.123000 1561 2417 2 chr7B.!!$F5 856
11 TraesCS3B01G470400 chr7B 598649386 598650256 870 False 566.500000 636 92.142500 1561 2417 2 chr7B.!!$F6 856
12 TraesCS3B01G470400 chr7B 644945483 644946363 880 False 528.000000 603 90.383000 1561 2417 2 chr7B.!!$F11 856
13 TraesCS3B01G470400 chr7B 598923467 598925372 1905 False 453.666667 595 92.888667 346 1325 3 chr7B.!!$F7 979
14 TraesCS3B01G470400 chr1A 497961479 497962089 610 True 603.000000 603 84.759000 346 974 1 chr1A.!!$R1 628
15 TraesCS3B01G470400 chr1D 402721117 402721656 539 True 595.000000 595 86.871000 346 887 1 chr1D.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.036022 TGTGGGTTGATGCGACATCA 59.964 50.000 15.52 15.52 0.00 3.07 F
317 318 0.108186 TGCGACATCATGTGGGACTC 60.108 55.000 0.00 0.00 0.00 3.36 F
319 320 0.179073 CGACATCATGTGGGACTCCC 60.179 60.000 7.25 7.25 45.71 4.30 F
356 357 0.318441 CAGCCTGACGTCCAAGAGAA 59.682 55.000 14.12 0.00 0.00 2.87 F
503 516 1.200020 CTTGACTTGGCGGTTCCATTC 59.800 52.381 0.00 0.00 46.04 2.67 F
1091 2157 2.747855 GCCTTCAAGGGCCTGTCG 60.748 66.667 6.92 0.00 45.92 4.35 F
1937 3126 2.865119 TGATCATGTTGTGAGTGGCT 57.135 45.000 0.00 0.00 40.92 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 3218 0.183492 AAAGTGTCCCAGCTTGAGCA 59.817 50.000 5.70 0.0 45.16 4.26 R
2378 3640 1.521580 TTGCACGCTGAATGATCACA 58.478 45.000 0.00 0.0 0.00 3.58 R
2400 3662 5.367302 CACAAAAGTTGGGATGGAAATTGT 58.633 37.500 0.00 0.0 35.62 2.71 R
2409 3671 6.016555 AGGTAAATAGCACAAAAGTTGGGAT 58.983 36.000 0.00 0.0 35.62 3.85 R
2523 3833 1.465777 ACGTTTGGTTGCGGCTTATAC 59.534 47.619 0.00 0.0 0.00 1.47 R
2664 3975 5.110814 TGTCCGGTCCATATTTCTCAAAT 57.889 39.130 0.00 0.0 34.90 2.32 R
3739 5105 2.368548 GACACAAAAGAGGGGCCAAAAT 59.631 45.455 4.39 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.763172 CTTGTTGTAGCCTCTAGTCTTATTG 57.237 40.000 0.00 0.00 0.00 1.90
25 26 5.661458 TGTTGTAGCCTCTAGTCTTATTGC 58.339 41.667 0.00 0.00 0.00 3.56
26 27 5.186992 TGTTGTAGCCTCTAGTCTTATTGCA 59.813 40.000 0.00 0.00 0.00 4.08
27 28 5.932619 TGTAGCCTCTAGTCTTATTGCAA 57.067 39.130 0.00 0.00 0.00 4.08
28 29 6.485830 TGTAGCCTCTAGTCTTATTGCAAT 57.514 37.500 17.56 17.56 0.00 3.56
29 30 6.889198 TGTAGCCTCTAGTCTTATTGCAATT 58.111 36.000 18.75 1.02 0.00 2.32
30 31 6.763135 TGTAGCCTCTAGTCTTATTGCAATTG 59.237 38.462 18.75 11.19 0.00 2.32
31 32 5.994250 AGCCTCTAGTCTTATTGCAATTGA 58.006 37.500 18.75 13.36 0.00 2.57
32 33 6.599445 AGCCTCTAGTCTTATTGCAATTGAT 58.401 36.000 18.75 9.00 0.00 2.57
33 34 7.059156 AGCCTCTAGTCTTATTGCAATTGATT 58.941 34.615 18.75 14.62 0.00 2.57
34 35 7.559170 AGCCTCTAGTCTTATTGCAATTGATTT 59.441 33.333 18.75 10.97 0.00 2.17
35 36 8.193438 GCCTCTAGTCTTATTGCAATTGATTTT 58.807 33.333 18.75 8.90 0.00 1.82
36 37 9.512435 CCTCTAGTCTTATTGCAATTGATTTTG 57.488 33.333 18.75 9.79 0.00 2.44
41 42 9.768662 AGTCTTATTGCAATTGATTTTGTCTTT 57.231 25.926 18.75 0.00 0.00 2.52
47 48 9.768662 ATTGCAATTGATTTTGTCTTTAGTCTT 57.231 25.926 10.34 0.00 0.00 3.01
48 49 8.578308 TGCAATTGATTTTGTCTTTAGTCTTG 57.422 30.769 10.34 0.00 0.00 3.02
49 50 7.169645 TGCAATTGATTTTGTCTTTAGTCTTGC 59.830 33.333 10.34 0.00 34.79 4.01
50 51 7.383300 GCAATTGATTTTGTCTTTAGTCTTGCT 59.617 33.333 10.34 0.00 32.31 3.91
51 52 8.697067 CAATTGATTTTGTCTTTAGTCTTGCTG 58.303 33.333 0.00 0.00 0.00 4.41
52 53 5.762045 TGATTTTGTCTTTAGTCTTGCTGC 58.238 37.500 0.00 0.00 0.00 5.25
53 54 5.299028 TGATTTTGTCTTTAGTCTTGCTGCA 59.701 36.000 0.00 0.00 0.00 4.41
54 55 5.574891 TTTTGTCTTTAGTCTTGCTGCAA 57.425 34.783 15.16 15.16 0.00 4.08
55 56 5.574891 TTTGTCTTTAGTCTTGCTGCAAA 57.425 34.783 16.74 4.96 0.00 3.68
56 57 5.772825 TTGTCTTTAGTCTTGCTGCAAAT 57.227 34.783 16.74 7.94 0.00 2.32
57 58 6.875948 TTGTCTTTAGTCTTGCTGCAAATA 57.124 33.333 16.74 6.98 0.00 1.40
58 59 6.875948 TGTCTTTAGTCTTGCTGCAAATAA 57.124 33.333 16.74 12.21 0.00 1.40
59 60 7.270757 TGTCTTTAGTCTTGCTGCAAATAAA 57.729 32.000 16.74 17.70 0.00 1.40
60 61 7.362662 TGTCTTTAGTCTTGCTGCAAATAAAG 58.637 34.615 27.64 27.64 32.02 1.85
61 62 6.803807 GTCTTTAGTCTTGCTGCAAATAAAGG 59.196 38.462 29.81 20.80 31.87 3.11
62 63 6.714810 TCTTTAGTCTTGCTGCAAATAAAGGA 59.285 34.615 29.81 21.83 31.87 3.36
63 64 7.394359 TCTTTAGTCTTGCTGCAAATAAAGGAT 59.606 33.333 29.81 13.39 31.87 3.24
64 65 5.320549 AGTCTTGCTGCAAATAAAGGATG 57.679 39.130 16.74 1.46 0.00 3.51
65 66 4.159135 AGTCTTGCTGCAAATAAAGGATGG 59.841 41.667 16.74 0.72 0.00 3.51
66 67 2.965572 TGCTGCAAATAAAGGATGGC 57.034 45.000 0.00 0.00 0.00 4.40
67 68 2.177734 TGCTGCAAATAAAGGATGGCA 58.822 42.857 0.00 0.00 0.00 4.92
68 69 2.166870 TGCTGCAAATAAAGGATGGCAG 59.833 45.455 0.00 7.05 44.15 4.85
69 70 2.482490 GCTGCAAATAAAGGATGGCAGG 60.482 50.000 12.65 0.00 42.72 4.85
70 71 2.762327 CTGCAAATAAAGGATGGCAGGT 59.238 45.455 0.00 0.00 40.54 4.00
71 72 3.172339 TGCAAATAAAGGATGGCAGGTT 58.828 40.909 0.00 0.00 0.00 3.50
72 73 3.055963 TGCAAATAAAGGATGGCAGGTTG 60.056 43.478 0.00 0.00 0.00 3.77
73 74 3.055891 GCAAATAAAGGATGGCAGGTTGT 60.056 43.478 0.00 0.00 0.00 3.32
74 75 4.159506 GCAAATAAAGGATGGCAGGTTGTA 59.840 41.667 0.00 0.00 0.00 2.41
75 76 5.163416 GCAAATAAAGGATGGCAGGTTGTAT 60.163 40.000 0.00 0.00 0.00 2.29
76 77 6.630188 GCAAATAAAGGATGGCAGGTTGTATT 60.630 38.462 0.00 0.00 0.00 1.89
77 78 7.417342 GCAAATAAAGGATGGCAGGTTGTATTA 60.417 37.037 0.00 0.00 0.00 0.98
78 79 8.474025 CAAATAAAGGATGGCAGGTTGTATTAA 58.526 33.333 0.00 0.00 0.00 1.40
79 80 8.782137 AATAAAGGATGGCAGGTTGTATTAAT 57.218 30.769 0.00 0.00 0.00 1.40
80 81 6.469782 AAAGGATGGCAGGTTGTATTAATG 57.530 37.500 0.00 0.00 0.00 1.90
81 82 3.891366 AGGATGGCAGGTTGTATTAATGC 59.109 43.478 0.00 0.00 36.16 3.56
82 83 3.636300 GGATGGCAGGTTGTATTAATGCA 59.364 43.478 1.68 1.68 38.63 3.96
83 84 4.099266 GGATGGCAGGTTGTATTAATGCAA 59.901 41.667 14.12 14.12 38.63 4.08
84 85 5.221501 GGATGGCAGGTTGTATTAATGCAAT 60.222 40.000 19.86 3.60 38.63 3.56
85 86 5.674052 TGGCAGGTTGTATTAATGCAATT 57.326 34.783 19.86 10.34 41.28 2.32
86 87 6.047511 TGGCAGGTTGTATTAATGCAATTT 57.952 33.333 19.86 10.04 37.87 1.82
87 88 7.175347 TGGCAGGTTGTATTAATGCAATTTA 57.825 32.000 19.86 0.00 37.87 1.40
88 89 7.790027 TGGCAGGTTGTATTAATGCAATTTAT 58.210 30.769 19.86 6.10 37.87 1.40
89 90 7.925483 TGGCAGGTTGTATTAATGCAATTTATC 59.075 33.333 19.86 8.36 37.87 1.75
90 91 8.143835 GGCAGGTTGTATTAATGCAATTTATCT 58.856 33.333 19.86 10.93 37.87 1.98
91 92 9.533253 GCAGGTTGTATTAATGCAATTTATCTT 57.467 29.630 19.86 3.11 37.87 2.40
112 113 8.743085 ATCTTGCATTCAGATTATGTACTTGT 57.257 30.769 0.00 0.00 0.00 3.16
113 114 8.565896 TCTTGCATTCAGATTATGTACTTGTT 57.434 30.769 0.00 0.00 0.00 2.83
114 115 8.453320 TCTTGCATTCAGATTATGTACTTGTTG 58.547 33.333 0.00 0.00 0.00 3.33
115 116 7.686438 TGCATTCAGATTATGTACTTGTTGT 57.314 32.000 0.00 0.00 0.00 3.32
116 117 8.785329 TGCATTCAGATTATGTACTTGTTGTA 57.215 30.769 0.00 0.00 0.00 2.41
117 118 9.394767 TGCATTCAGATTATGTACTTGTTGTAT 57.605 29.630 0.00 0.00 33.23 2.29
118 119 9.869844 GCATTCAGATTATGTACTTGTTGTATC 57.130 33.333 0.00 0.00 33.23 2.24
121 122 9.599866 TTCAGATTATGTACTTGTTGTATCCTG 57.400 33.333 0.00 0.00 33.23 3.86
122 123 8.977412 TCAGATTATGTACTTGTTGTATCCTGA 58.023 33.333 0.00 0.00 33.23 3.86
123 124 9.035607 CAGATTATGTACTTGTTGTATCCTGAC 57.964 37.037 0.00 0.00 33.23 3.51
124 125 8.758829 AGATTATGTACTTGTTGTATCCTGACA 58.241 33.333 0.00 0.00 33.23 3.58
125 126 8.948631 ATTATGTACTTGTTGTATCCTGACAG 57.051 34.615 0.00 0.00 33.23 3.51
126 127 5.147330 TGTACTTGTTGTATCCTGACAGG 57.853 43.478 15.99 15.99 36.46 4.00
127 128 4.591498 TGTACTTGTTGTATCCTGACAGGT 59.409 41.667 21.06 11.03 37.38 4.00
128 129 4.706842 ACTTGTTGTATCCTGACAGGTT 57.293 40.909 21.06 15.32 36.53 3.50
129 130 4.389374 ACTTGTTGTATCCTGACAGGTTG 58.611 43.478 21.06 2.26 36.53 3.77
130 131 4.141482 ACTTGTTGTATCCTGACAGGTTGT 60.141 41.667 21.06 10.98 36.53 3.32
131 132 5.071250 ACTTGTTGTATCCTGACAGGTTGTA 59.929 40.000 21.06 10.05 36.53 2.41
132 133 5.147330 TGTTGTATCCTGACAGGTTGTAG 57.853 43.478 21.06 0.00 36.53 2.74
133 134 4.591498 TGTTGTATCCTGACAGGTTGTAGT 59.409 41.667 21.06 4.79 36.53 2.73
134 135 5.169295 GTTGTATCCTGACAGGTTGTAGTC 58.831 45.833 21.06 6.93 36.53 2.59
135 136 4.673968 TGTATCCTGACAGGTTGTAGTCT 58.326 43.478 21.06 0.73 36.53 3.24
136 137 5.084519 TGTATCCTGACAGGTTGTAGTCTT 58.915 41.667 21.06 0.00 36.53 3.01
137 138 6.250711 TGTATCCTGACAGGTTGTAGTCTTA 58.749 40.000 21.06 0.00 36.53 2.10
138 139 6.722590 TGTATCCTGACAGGTTGTAGTCTTAA 59.277 38.462 21.06 0.00 36.53 1.85
139 140 6.875972 ATCCTGACAGGTTGTAGTCTTAAT 57.124 37.500 21.06 0.00 36.53 1.40
140 141 7.973048 ATCCTGACAGGTTGTAGTCTTAATA 57.027 36.000 21.06 0.00 36.53 0.98
141 142 7.166691 TCCTGACAGGTTGTAGTCTTAATAC 57.833 40.000 21.06 0.00 36.53 1.89
142 143 6.722590 TCCTGACAGGTTGTAGTCTTAATACA 59.277 38.462 21.06 0.00 36.53 2.29
143 144 7.399191 TCCTGACAGGTTGTAGTCTTAATACAT 59.601 37.037 21.06 0.00 36.53 2.29
144 145 7.492669 CCTGACAGGTTGTAGTCTTAATACATG 59.507 40.741 13.84 0.00 35.81 3.21
145 146 7.327975 TGACAGGTTGTAGTCTTAATACATGG 58.672 38.462 0.00 0.00 35.81 3.66
146 147 7.179516 TGACAGGTTGTAGTCTTAATACATGGA 59.820 37.037 0.00 0.00 35.81 3.41
147 148 7.556844 ACAGGTTGTAGTCTTAATACATGGAG 58.443 38.462 0.00 0.00 33.36 3.86
148 149 7.399191 ACAGGTTGTAGTCTTAATACATGGAGA 59.601 37.037 0.00 0.00 33.36 3.71
149 150 7.923344 CAGGTTGTAGTCTTAATACATGGAGAG 59.077 40.741 0.00 0.00 33.36 3.20
150 151 7.620094 AGGTTGTAGTCTTAATACATGGAGAGT 59.380 37.037 0.00 0.00 33.36 3.24
151 152 8.910944 GGTTGTAGTCTTAATACATGGAGAGTA 58.089 37.037 0.00 0.00 33.36 2.59
166 167 9.823647 ACATGGAGAGTAAATAGTATGAACTTG 57.176 33.333 0.00 0.00 37.15 3.16
167 168 8.768955 CATGGAGAGTAAATAGTATGAACTTGC 58.231 37.037 0.53 0.00 37.15 4.01
168 169 8.079211 TGGAGAGTAAATAGTATGAACTTGCT 57.921 34.615 0.53 0.00 37.15 3.91
169 170 7.981789 TGGAGAGTAAATAGTATGAACTTGCTG 59.018 37.037 0.53 0.00 37.15 4.41
170 171 7.982354 GGAGAGTAAATAGTATGAACTTGCTGT 59.018 37.037 0.53 0.00 37.15 4.40
172 173 9.804758 AGAGTAAATAGTATGAACTTGCTGTAC 57.195 33.333 0.53 0.00 37.15 2.90
173 174 8.943909 AGTAAATAGTATGAACTTGCTGTACC 57.056 34.615 0.00 0.00 37.15 3.34
174 175 7.985752 AGTAAATAGTATGAACTTGCTGTACCC 59.014 37.037 0.00 0.00 37.15 3.69
175 176 6.561519 AATAGTATGAACTTGCTGTACCCT 57.438 37.500 0.00 0.00 37.15 4.34
176 177 4.207891 AGTATGAACTTGCTGTACCCTG 57.792 45.455 0.00 0.00 29.00 4.45
177 178 3.838317 AGTATGAACTTGCTGTACCCTGA 59.162 43.478 0.00 0.00 29.00 3.86
178 179 2.543777 TGAACTTGCTGTACCCTGAC 57.456 50.000 0.00 0.00 0.00 3.51
179 180 1.765904 TGAACTTGCTGTACCCTGACA 59.234 47.619 0.00 0.00 0.00 3.58
180 181 2.371841 TGAACTTGCTGTACCCTGACAT 59.628 45.455 0.00 0.00 0.00 3.06
181 182 2.479566 ACTTGCTGTACCCTGACATG 57.520 50.000 0.00 0.00 0.00 3.21
182 183 1.699634 ACTTGCTGTACCCTGACATGT 59.300 47.619 0.00 0.00 0.00 3.21
183 184 2.903784 ACTTGCTGTACCCTGACATGTA 59.096 45.455 0.00 0.00 0.00 2.29
184 185 3.262420 CTTGCTGTACCCTGACATGTAC 58.738 50.000 0.00 7.96 38.22 2.90
185 186 2.536066 TGCTGTACCCTGACATGTACT 58.464 47.619 0.00 0.00 38.48 2.73
186 187 2.903784 TGCTGTACCCTGACATGTACTT 59.096 45.455 0.00 0.00 38.48 2.24
187 188 3.326588 TGCTGTACCCTGACATGTACTTT 59.673 43.478 0.00 0.00 38.48 2.66
188 189 4.202419 TGCTGTACCCTGACATGTACTTTT 60.202 41.667 0.00 0.00 38.48 2.27
189 190 4.760204 GCTGTACCCTGACATGTACTTTTT 59.240 41.667 0.00 0.00 38.48 1.94
190 191 5.334879 GCTGTACCCTGACATGTACTTTTTG 60.335 44.000 0.00 0.00 38.48 2.44
191 192 5.686753 TGTACCCTGACATGTACTTTTTGT 58.313 37.500 0.00 0.00 38.48 2.83
192 193 6.828788 TGTACCCTGACATGTACTTTTTGTA 58.171 36.000 0.00 0.00 38.48 2.41
193 194 7.455058 TGTACCCTGACATGTACTTTTTGTAT 58.545 34.615 0.00 0.00 38.48 2.29
194 195 7.940137 TGTACCCTGACATGTACTTTTTGTATT 59.060 33.333 0.00 0.00 38.48 1.89
195 196 7.833285 ACCCTGACATGTACTTTTTGTATTT 57.167 32.000 0.00 0.00 33.23 1.40
196 197 8.245195 ACCCTGACATGTACTTTTTGTATTTT 57.755 30.769 0.00 0.00 33.23 1.82
197 198 8.700973 ACCCTGACATGTACTTTTTGTATTTTT 58.299 29.630 0.00 0.00 33.23 1.94
221 222 9.806203 TTTAATTCTTGCATTCAGATTATGTGG 57.194 29.630 0.00 0.00 0.00 4.17
222 223 5.840243 TTCTTGCATTCAGATTATGTGGG 57.160 39.130 0.00 0.00 0.00 4.61
223 224 4.858850 TCTTGCATTCAGATTATGTGGGT 58.141 39.130 0.00 0.00 0.00 4.51
224 225 6.000246 TCTTGCATTCAGATTATGTGGGTA 58.000 37.500 0.00 0.00 0.00 3.69
225 226 6.604171 TCTTGCATTCAGATTATGTGGGTAT 58.396 36.000 0.00 0.00 0.00 2.73
226 227 7.744733 TCTTGCATTCAGATTATGTGGGTATA 58.255 34.615 0.00 0.00 0.00 1.47
227 228 8.385491 TCTTGCATTCAGATTATGTGGGTATAT 58.615 33.333 0.00 0.00 0.00 0.86
228 229 7.926674 TGCATTCAGATTATGTGGGTATATG 57.073 36.000 0.00 0.00 0.00 1.78
229 230 6.885918 TGCATTCAGATTATGTGGGTATATGG 59.114 38.462 0.00 0.00 0.00 2.74
230 231 6.183360 GCATTCAGATTATGTGGGTATATGGC 60.183 42.308 0.00 0.00 0.00 4.40
231 232 6.446909 TTCAGATTATGTGGGTATATGGCA 57.553 37.500 0.00 0.00 0.00 4.92
232 233 6.446909 TCAGATTATGTGGGTATATGGCAA 57.553 37.500 0.00 0.00 0.00 4.52
233 234 6.237901 TCAGATTATGTGGGTATATGGCAAC 58.762 40.000 0.00 0.00 0.00 4.17
234 235 5.415701 CAGATTATGTGGGTATATGGCAACC 59.584 44.000 0.00 0.00 34.85 3.77
235 236 2.270352 ATGTGGGTATATGGCAACCG 57.730 50.000 0.00 0.00 36.57 4.44
236 237 0.181587 TGTGGGTATATGGCAACCGG 59.818 55.000 0.00 0.00 36.57 5.28
237 238 1.149627 TGGGTATATGGCAACCGGC 59.850 57.895 0.00 0.00 43.74 6.13
246 247 2.270850 GCAACCGGCATAGTCCCA 59.729 61.111 0.00 0.00 43.97 4.37
247 248 1.377987 GCAACCGGCATAGTCCCAA 60.378 57.895 0.00 0.00 43.97 4.12
248 249 0.751643 GCAACCGGCATAGTCCCAAT 60.752 55.000 0.00 0.00 43.97 3.16
249 250 1.762708 CAACCGGCATAGTCCCAATT 58.237 50.000 0.00 0.00 0.00 2.32
250 251 2.925724 CAACCGGCATAGTCCCAATTA 58.074 47.619 0.00 0.00 0.00 1.40
251 252 3.486383 CAACCGGCATAGTCCCAATTAT 58.514 45.455 0.00 0.00 0.00 1.28
252 253 3.876309 ACCGGCATAGTCCCAATTATT 57.124 42.857 0.00 0.00 0.00 1.40
253 254 4.178956 ACCGGCATAGTCCCAATTATTT 57.821 40.909 0.00 0.00 0.00 1.40
254 255 4.542697 ACCGGCATAGTCCCAATTATTTT 58.457 39.130 0.00 0.00 0.00 1.82
255 256 4.959839 ACCGGCATAGTCCCAATTATTTTT 59.040 37.500 0.00 0.00 0.00 1.94
279 280 2.567862 TGGACATCCCACTTAATCCCA 58.432 47.619 0.00 0.00 40.82 4.37
280 281 2.241176 TGGACATCCCACTTAATCCCAC 59.759 50.000 0.00 0.00 40.82 4.61
281 282 2.241176 GGACATCCCACTTAATCCCACA 59.759 50.000 0.00 0.00 34.14 4.17
282 283 3.117512 GGACATCCCACTTAATCCCACAT 60.118 47.826 0.00 0.00 34.14 3.21
283 284 4.104102 GGACATCCCACTTAATCCCACATA 59.896 45.833 0.00 0.00 34.14 2.29
284 285 5.398581 GGACATCCCACTTAATCCCACATAA 60.399 44.000 0.00 0.00 34.14 1.90
285 286 6.279813 ACATCCCACTTAATCCCACATAAT 57.720 37.500 0.00 0.00 0.00 1.28
286 287 6.682537 ACATCCCACTTAATCCCACATAATT 58.317 36.000 0.00 0.00 0.00 1.40
287 288 7.821566 ACATCCCACTTAATCCCACATAATTA 58.178 34.615 0.00 0.00 0.00 1.40
288 289 8.456124 ACATCCCACTTAATCCCACATAATTAT 58.544 33.333 0.00 0.00 0.00 1.28
289 290 8.742777 CATCCCACTTAATCCCACATAATTATG 58.257 37.037 21.42 21.42 39.55 1.90
301 302 5.437289 ACATAATTATGTGGGTTGATGCG 57.563 39.130 26.51 0.39 44.66 4.73
302 303 5.129634 ACATAATTATGTGGGTTGATGCGA 58.870 37.500 26.51 0.00 44.66 5.10
303 304 5.008613 ACATAATTATGTGGGTTGATGCGAC 59.991 40.000 26.51 0.00 44.66 5.19
304 305 2.481289 TTATGTGGGTTGATGCGACA 57.519 45.000 0.00 0.00 0.00 4.35
305 306 2.708216 TATGTGGGTTGATGCGACAT 57.292 45.000 0.00 0.00 0.00 3.06
306 307 1.382522 ATGTGGGTTGATGCGACATC 58.617 50.000 11.42 11.42 0.00 3.06
307 308 0.036022 TGTGGGTTGATGCGACATCA 59.964 50.000 15.52 15.52 0.00 3.07
308 309 1.339920 TGTGGGTTGATGCGACATCAT 60.340 47.619 18.73 0.00 0.00 2.45
309 310 1.064505 GTGGGTTGATGCGACATCATG 59.935 52.381 18.73 0.00 0.00 3.07
310 311 1.339920 TGGGTTGATGCGACATCATGT 60.340 47.619 18.73 0.00 0.00 3.21
311 312 1.064505 GGGTTGATGCGACATCATGTG 59.935 52.381 18.73 0.00 0.00 3.21
312 313 1.064505 GGTTGATGCGACATCATGTGG 59.935 52.381 18.73 0.00 0.00 4.17
313 314 1.064505 GTTGATGCGACATCATGTGGG 59.935 52.381 18.73 0.00 0.00 4.61
314 315 0.540923 TGATGCGACATCATGTGGGA 59.459 50.000 15.52 0.00 30.49 4.37
315 316 0.940126 GATGCGACATCATGTGGGAC 59.060 55.000 0.00 0.00 28.46 4.46
316 317 0.543277 ATGCGACATCATGTGGGACT 59.457 50.000 0.00 0.00 28.46 3.85
317 318 0.108186 TGCGACATCATGTGGGACTC 60.108 55.000 0.00 0.00 0.00 3.36
318 319 0.811616 GCGACATCATGTGGGACTCC 60.812 60.000 0.00 0.00 0.00 3.85
319 320 0.179073 CGACATCATGTGGGACTCCC 60.179 60.000 7.25 7.25 45.71 4.30
328 329 3.148279 GGGACTCCCGCGTCTCAT 61.148 66.667 4.92 0.00 34.50 2.90
329 330 2.413765 GGACTCCCGCGTCTCATC 59.586 66.667 4.92 0.00 34.38 2.92
330 331 2.413765 GACTCCCGCGTCTCATCC 59.586 66.667 4.92 0.00 0.00 3.51
331 332 3.140225 GACTCCCGCGTCTCATCCC 62.140 68.421 4.92 0.00 0.00 3.85
332 333 3.147595 CTCCCGCGTCTCATCCCA 61.148 66.667 4.92 0.00 0.00 4.37
333 334 3.432051 CTCCCGCGTCTCATCCCAC 62.432 68.421 4.92 0.00 0.00 4.61
334 335 3.461773 CCCGCGTCTCATCCCACT 61.462 66.667 4.92 0.00 0.00 4.00
335 336 2.579201 CCGCGTCTCATCCCACTT 59.421 61.111 4.92 0.00 0.00 3.16
336 337 1.811266 CCGCGTCTCATCCCACTTG 60.811 63.158 4.92 0.00 0.00 3.16
337 338 2.456119 CGCGTCTCATCCCACTTGC 61.456 63.158 0.00 0.00 0.00 4.01
338 339 1.375908 GCGTCTCATCCCACTTGCA 60.376 57.895 0.00 0.00 0.00 4.08
339 340 1.364626 GCGTCTCATCCCACTTGCAG 61.365 60.000 0.00 0.00 0.00 4.41
340 341 1.364626 CGTCTCATCCCACTTGCAGC 61.365 60.000 0.00 0.00 0.00 5.25
341 342 1.028868 GTCTCATCCCACTTGCAGCC 61.029 60.000 0.00 0.00 0.00 4.85
342 343 1.203441 TCTCATCCCACTTGCAGCCT 61.203 55.000 0.00 0.00 0.00 4.58
343 344 1.001764 TCATCCCACTTGCAGCCTG 60.002 57.895 0.00 0.00 0.00 4.85
344 345 1.001764 CATCCCACTTGCAGCCTGA 60.002 57.895 0.00 0.00 0.00 3.86
356 357 0.318441 CAGCCTGACGTCCAAGAGAA 59.682 55.000 14.12 0.00 0.00 2.87
372 373 4.008074 AGAGAATTTCTTTGAGTCGGCA 57.992 40.909 0.00 0.00 29.61 5.69
423 424 3.303135 TTCTCTGGCGTCGGCTGT 61.303 61.111 20.29 0.00 39.81 4.40
503 516 1.200020 CTTGACTTGGCGGTTCCATTC 59.800 52.381 0.00 0.00 46.04 2.67
668 712 2.835431 CAGGGATCGAGAGGCGGT 60.835 66.667 0.00 0.00 41.33 5.68
1043 2109 3.044305 GCTGCTGCGTTTCTCCGT 61.044 61.111 0.00 0.00 0.00 4.69
1091 2157 2.747855 GCCTTCAAGGGCCTGTCG 60.748 66.667 6.92 0.00 45.92 4.35
1604 2681 5.249420 GGAATGACAGGGATTAGATTAGGC 58.751 45.833 0.00 0.00 0.00 3.93
1799 2898 3.969553 ACTAGCACCTGTGATCTGTAGA 58.030 45.455 0.51 0.00 0.00 2.59
1937 3126 2.865119 TGATCATGTTGTGAGTGGCT 57.135 45.000 0.00 0.00 40.92 4.75
1969 3159 7.328277 TCATTCGTTTAGATAAAACCATGGG 57.672 36.000 18.09 0.00 43.90 4.00
2003 3211 9.686683 ATGTTGTAAAGAGACTTTAATGGCTAT 57.313 29.630 0.00 0.00 0.00 2.97
2010 3218 5.908247 AGAGACTTTAATGGCTATTCCCTCT 59.092 40.000 0.00 3.08 0.00 3.69
2400 3662 3.688673 TGTGATCATTCAGCGTGCAAATA 59.311 39.130 0.00 0.00 30.85 1.40
2409 3671 3.254411 TCAGCGTGCAAATACAATTTCCA 59.746 39.130 0.00 0.00 0.00 3.53
2664 3975 5.384336 TCCTTGATTGATGGACTTGTCAAA 58.616 37.500 3.08 0.00 37.82 2.69
2734 4047 2.642311 TGGATCTAGTTGGGTTTCAGCA 59.358 45.455 0.00 0.00 0.00 4.41
2742 4055 2.492088 GTTGGGTTTCAGCAGAATACCC 59.508 50.000 23.36 23.36 45.44 3.69
2964 4277 3.868077 CAGACTGCTGATAGGTTTACTGC 59.132 47.826 0.00 0.00 45.17 4.40
3197 4512 6.252233 TGAATCCAAACAATCATTACTGGGA 58.748 36.000 0.00 0.00 0.00 4.37
3316 4631 0.956633 AGTTGGTGCATGCAAGACAG 59.043 50.000 24.58 0.00 0.00 3.51
3454 4783 6.759497 AAAGGCAAAAATAGTAGTAGCAGG 57.241 37.500 0.00 0.00 0.00 4.85
3590 4956 6.042777 GCATTTCTTTAGTATTTTGGCCTCC 58.957 40.000 3.32 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.256757 GCAATAAGACTAGAGGCTACAACAAG 59.743 42.308 0.00 0.00 0.00 3.16
1 2 6.106673 GCAATAAGACTAGAGGCTACAACAA 58.893 40.000 0.00 0.00 0.00 2.83
2 3 5.186992 TGCAATAAGACTAGAGGCTACAACA 59.813 40.000 0.00 0.00 0.00 3.33
3 4 5.661458 TGCAATAAGACTAGAGGCTACAAC 58.339 41.667 0.00 0.00 0.00 3.32
4 5 5.932619 TGCAATAAGACTAGAGGCTACAA 57.067 39.130 0.00 0.00 0.00 2.41
5 6 5.932619 TTGCAATAAGACTAGAGGCTACA 57.067 39.130 0.00 0.00 0.00 2.74
6 7 6.986817 TCAATTGCAATAAGACTAGAGGCTAC 59.013 38.462 13.39 0.00 0.00 3.58
7 8 7.124573 TCAATTGCAATAAGACTAGAGGCTA 57.875 36.000 13.39 0.00 0.00 3.93
8 9 5.994250 TCAATTGCAATAAGACTAGAGGCT 58.006 37.500 13.39 0.00 0.00 4.58
9 10 6.874288 ATCAATTGCAATAAGACTAGAGGC 57.126 37.500 13.39 0.00 0.00 4.70
10 11 9.512435 CAAAATCAATTGCAATAAGACTAGAGG 57.488 33.333 13.39 0.29 0.00 3.69
15 16 9.768662 AAAGACAAAATCAATTGCAATAAGACT 57.231 25.926 13.39 0.94 33.52 3.24
21 22 9.768662 AAGACTAAAGACAAAATCAATTGCAAT 57.231 25.926 5.99 5.99 33.52 3.56
22 23 9.033481 CAAGACTAAAGACAAAATCAATTGCAA 57.967 29.630 0.00 0.00 33.52 4.08
23 24 7.169645 GCAAGACTAAAGACAAAATCAATTGCA 59.830 33.333 0.00 0.00 37.37 4.08
24 25 7.383300 AGCAAGACTAAAGACAAAATCAATTGC 59.617 33.333 0.00 0.00 37.61 3.56
25 26 8.697067 CAGCAAGACTAAAGACAAAATCAATTG 58.303 33.333 0.00 0.00 36.37 2.32
26 27 7.383300 GCAGCAAGACTAAAGACAAAATCAATT 59.617 33.333 0.00 0.00 0.00 2.32
27 28 6.865205 GCAGCAAGACTAAAGACAAAATCAAT 59.135 34.615 0.00 0.00 0.00 2.57
28 29 6.183360 TGCAGCAAGACTAAAGACAAAATCAA 60.183 34.615 0.00 0.00 0.00 2.57
29 30 5.299028 TGCAGCAAGACTAAAGACAAAATCA 59.701 36.000 0.00 0.00 0.00 2.57
30 31 5.762045 TGCAGCAAGACTAAAGACAAAATC 58.238 37.500 0.00 0.00 0.00 2.17
31 32 5.772825 TGCAGCAAGACTAAAGACAAAAT 57.227 34.783 0.00 0.00 0.00 1.82
32 33 5.574891 TTGCAGCAAGACTAAAGACAAAA 57.425 34.783 2.83 0.00 0.00 2.44
33 34 5.574891 TTTGCAGCAAGACTAAAGACAAA 57.425 34.783 8.12 0.00 0.00 2.83
34 35 5.772825 ATTTGCAGCAAGACTAAAGACAA 57.227 34.783 8.12 0.00 0.00 3.18
35 36 6.875948 TTATTTGCAGCAAGACTAAAGACA 57.124 33.333 8.12 0.00 0.00 3.41
36 37 6.803807 CCTTTATTTGCAGCAAGACTAAAGAC 59.196 38.462 27.94 0.00 31.34 3.01
37 38 6.714810 TCCTTTATTTGCAGCAAGACTAAAGA 59.285 34.615 27.94 19.07 31.34 2.52
38 39 6.913170 TCCTTTATTTGCAGCAAGACTAAAG 58.087 36.000 23.88 23.88 30.56 1.85
39 40 6.892658 TCCTTTATTTGCAGCAAGACTAAA 57.107 33.333 8.12 12.12 0.00 1.85
40 41 6.127647 CCATCCTTTATTTGCAGCAAGACTAA 60.128 38.462 8.12 5.51 0.00 2.24
41 42 5.357878 CCATCCTTTATTTGCAGCAAGACTA 59.642 40.000 8.12 0.00 0.00 2.59
42 43 4.159135 CCATCCTTTATTTGCAGCAAGACT 59.841 41.667 8.12 0.23 0.00 3.24
43 44 4.427312 CCATCCTTTATTTGCAGCAAGAC 58.573 43.478 8.12 0.00 0.00 3.01
44 45 3.119029 GCCATCCTTTATTTGCAGCAAGA 60.119 43.478 8.12 1.29 0.00 3.02
45 46 3.192466 GCCATCCTTTATTTGCAGCAAG 58.808 45.455 8.12 0.00 0.00 4.01
46 47 2.566279 TGCCATCCTTTATTTGCAGCAA 59.434 40.909 2.83 2.83 0.00 3.91
47 48 2.166870 CTGCCATCCTTTATTTGCAGCA 59.833 45.455 0.00 0.00 39.63 4.41
48 49 2.482490 CCTGCCATCCTTTATTTGCAGC 60.482 50.000 0.00 0.00 43.59 5.25
49 50 2.762327 ACCTGCCATCCTTTATTTGCAG 59.238 45.455 0.00 0.00 44.32 4.41
50 51 2.818921 ACCTGCCATCCTTTATTTGCA 58.181 42.857 0.00 0.00 0.00 4.08
51 52 3.055891 ACAACCTGCCATCCTTTATTTGC 60.056 43.478 0.00 0.00 0.00 3.68
52 53 4.806640 ACAACCTGCCATCCTTTATTTG 57.193 40.909 0.00 0.00 0.00 2.32
53 54 8.602472 TTAATACAACCTGCCATCCTTTATTT 57.398 30.769 0.00 0.00 0.00 1.40
54 55 8.641541 CATTAATACAACCTGCCATCCTTTATT 58.358 33.333 0.00 0.00 0.00 1.40
55 56 7.255942 GCATTAATACAACCTGCCATCCTTTAT 60.256 37.037 0.00 0.00 0.00 1.40
56 57 6.040391 GCATTAATACAACCTGCCATCCTTTA 59.960 38.462 0.00 0.00 0.00 1.85
57 58 5.163416 GCATTAATACAACCTGCCATCCTTT 60.163 40.000 0.00 0.00 0.00 3.11
58 59 4.342092 GCATTAATACAACCTGCCATCCTT 59.658 41.667 0.00 0.00 0.00 3.36
59 60 3.891366 GCATTAATACAACCTGCCATCCT 59.109 43.478 0.00 0.00 0.00 3.24
60 61 3.636300 TGCATTAATACAACCTGCCATCC 59.364 43.478 0.00 0.00 31.89 3.51
61 62 4.916983 TGCATTAATACAACCTGCCATC 57.083 40.909 0.00 0.00 31.89 3.51
62 63 5.874897 ATTGCATTAATACAACCTGCCAT 57.125 34.783 3.18 0.00 31.89 4.40
63 64 5.674052 AATTGCATTAATACAACCTGCCA 57.326 34.783 3.18 0.00 31.89 4.92
64 65 8.143835 AGATAAATTGCATTAATACAACCTGCC 58.856 33.333 3.18 0.00 31.89 4.85
65 66 9.533253 AAGATAAATTGCATTAATACAACCTGC 57.467 29.630 3.18 0.00 0.00 4.85
86 87 9.836864 ACAAGTACATAATCTGAATGCAAGATA 57.163 29.630 0.00 0.00 0.00 1.98
87 88 8.743085 ACAAGTACATAATCTGAATGCAAGAT 57.257 30.769 0.00 0.00 0.00 2.40
88 89 8.453320 CAACAAGTACATAATCTGAATGCAAGA 58.547 33.333 0.00 0.00 0.00 3.02
89 90 8.239314 ACAACAAGTACATAATCTGAATGCAAG 58.761 33.333 0.00 0.00 0.00 4.01
90 91 8.109705 ACAACAAGTACATAATCTGAATGCAA 57.890 30.769 0.00 0.00 0.00 4.08
91 92 7.686438 ACAACAAGTACATAATCTGAATGCA 57.314 32.000 0.00 0.00 0.00 3.96
92 93 9.869844 GATACAACAAGTACATAATCTGAATGC 57.130 33.333 0.00 0.00 35.05 3.56
95 96 9.599866 CAGGATACAACAAGTACATAATCTGAA 57.400 33.333 0.00 0.00 35.05 3.02
96 97 8.977412 TCAGGATACAACAAGTACATAATCTGA 58.023 33.333 0.00 0.00 35.05 3.27
97 98 9.035607 GTCAGGATACAACAAGTACATAATCTG 57.964 37.037 0.00 0.00 35.05 2.90
98 99 8.758829 TGTCAGGATACAACAAGTACATAATCT 58.241 33.333 0.00 0.00 35.05 2.40
99 100 8.942338 TGTCAGGATACAACAAGTACATAATC 57.058 34.615 0.00 0.00 35.05 1.75
100 101 7.987458 CCTGTCAGGATACAACAAGTACATAAT 59.013 37.037 14.26 0.00 37.67 1.28
101 102 7.038587 ACCTGTCAGGATACAACAAGTACATAA 60.039 37.037 26.18 0.00 37.67 1.90
102 103 6.439375 ACCTGTCAGGATACAACAAGTACATA 59.561 38.462 26.18 0.00 37.67 2.29
103 104 5.248477 ACCTGTCAGGATACAACAAGTACAT 59.752 40.000 26.18 0.00 37.67 2.29
104 105 4.591498 ACCTGTCAGGATACAACAAGTACA 59.409 41.667 26.18 0.00 37.67 2.90
105 106 5.148651 ACCTGTCAGGATACAACAAGTAC 57.851 43.478 26.18 0.00 37.67 2.73
106 107 5.071250 ACAACCTGTCAGGATACAACAAGTA 59.929 40.000 26.18 0.00 37.67 2.24
107 108 4.141482 ACAACCTGTCAGGATACAACAAGT 60.141 41.667 26.18 3.14 37.67 3.16
108 109 4.389374 ACAACCTGTCAGGATACAACAAG 58.611 43.478 26.18 2.49 37.67 3.16
109 110 4.431416 ACAACCTGTCAGGATACAACAA 57.569 40.909 26.18 0.00 37.67 2.83
110 111 4.591498 ACTACAACCTGTCAGGATACAACA 59.409 41.667 26.18 2.95 37.67 3.33
111 112 5.047235 AGACTACAACCTGTCAGGATACAAC 60.047 44.000 26.18 10.41 37.67 3.32
112 113 5.084519 AGACTACAACCTGTCAGGATACAA 58.915 41.667 26.18 5.80 37.67 2.41
113 114 4.673968 AGACTACAACCTGTCAGGATACA 58.326 43.478 26.18 6.83 37.67 2.29
114 115 5.662674 AAGACTACAACCTGTCAGGATAC 57.337 43.478 26.18 8.88 37.67 2.24
115 116 7.973048 ATTAAGACTACAACCTGTCAGGATA 57.027 36.000 26.18 12.83 37.67 2.59
116 117 6.875972 ATTAAGACTACAACCTGTCAGGAT 57.124 37.500 26.18 11.31 37.67 3.24
117 118 6.722590 TGTATTAAGACTACAACCTGTCAGGA 59.277 38.462 26.18 1.55 37.67 3.86
118 119 6.931838 TGTATTAAGACTACAACCTGTCAGG 58.068 40.000 17.88 17.88 42.49 3.86
119 120 7.492669 CCATGTATTAAGACTACAACCTGTCAG 59.507 40.741 1.39 0.00 35.81 3.51
120 121 7.179516 TCCATGTATTAAGACTACAACCTGTCA 59.820 37.037 1.39 0.00 35.81 3.58
121 122 7.553334 TCCATGTATTAAGACTACAACCTGTC 58.447 38.462 1.39 0.00 33.12 3.51
122 123 7.399191 TCTCCATGTATTAAGACTACAACCTGT 59.601 37.037 1.39 0.00 33.12 4.00
123 124 7.782049 TCTCCATGTATTAAGACTACAACCTG 58.218 38.462 1.39 0.00 33.12 4.00
124 125 7.620094 ACTCTCCATGTATTAAGACTACAACCT 59.380 37.037 1.39 0.00 33.12 3.50
125 126 7.783042 ACTCTCCATGTATTAAGACTACAACC 58.217 38.462 1.39 0.00 33.12 3.77
140 141 9.823647 CAAGTTCATACTATTTACTCTCCATGT 57.176 33.333 0.00 0.00 33.17 3.21
141 142 8.768955 GCAAGTTCATACTATTTACTCTCCATG 58.231 37.037 0.00 0.00 33.17 3.66
142 143 8.709308 AGCAAGTTCATACTATTTACTCTCCAT 58.291 33.333 0.00 0.00 33.17 3.41
143 144 7.981789 CAGCAAGTTCATACTATTTACTCTCCA 59.018 37.037 0.00 0.00 33.17 3.86
144 145 7.982354 ACAGCAAGTTCATACTATTTACTCTCC 59.018 37.037 0.00 0.00 33.17 3.71
145 146 8.934507 ACAGCAAGTTCATACTATTTACTCTC 57.065 34.615 0.00 0.00 33.17 3.20
146 147 9.804758 GTACAGCAAGTTCATACTATTTACTCT 57.195 33.333 0.00 0.00 33.17 3.24
147 148 9.032420 GGTACAGCAAGTTCATACTATTTACTC 57.968 37.037 0.00 0.00 33.17 2.59
148 149 7.985752 GGGTACAGCAAGTTCATACTATTTACT 59.014 37.037 0.00 0.00 33.17 2.24
149 150 7.985752 AGGGTACAGCAAGTTCATACTATTTAC 59.014 37.037 0.00 0.00 33.17 2.01
150 151 7.985184 CAGGGTACAGCAAGTTCATACTATTTA 59.015 37.037 0.00 0.00 33.17 1.40
151 152 6.823689 CAGGGTACAGCAAGTTCATACTATTT 59.176 38.462 0.00 0.00 33.17 1.40
152 153 6.156256 TCAGGGTACAGCAAGTTCATACTATT 59.844 38.462 0.00 0.00 33.17 1.73
153 154 5.661312 TCAGGGTACAGCAAGTTCATACTAT 59.339 40.000 0.00 0.00 33.17 2.12
154 155 5.020795 TCAGGGTACAGCAAGTTCATACTA 58.979 41.667 0.00 0.00 33.17 1.82
155 156 3.838317 TCAGGGTACAGCAAGTTCATACT 59.162 43.478 0.00 0.00 35.68 2.12
156 157 3.933332 GTCAGGGTACAGCAAGTTCATAC 59.067 47.826 0.00 0.00 0.00 2.39
157 158 3.580895 TGTCAGGGTACAGCAAGTTCATA 59.419 43.478 0.00 0.00 0.00 2.15
158 159 2.371841 TGTCAGGGTACAGCAAGTTCAT 59.628 45.455 0.00 0.00 0.00 2.57
159 160 1.765904 TGTCAGGGTACAGCAAGTTCA 59.234 47.619 0.00 0.00 0.00 3.18
160 161 2.543777 TGTCAGGGTACAGCAAGTTC 57.456 50.000 0.00 0.00 0.00 3.01
161 162 2.106511 ACATGTCAGGGTACAGCAAGTT 59.893 45.455 0.00 0.00 31.70 2.66
162 163 1.699634 ACATGTCAGGGTACAGCAAGT 59.300 47.619 0.00 0.00 31.70 3.16
163 164 2.479566 ACATGTCAGGGTACAGCAAG 57.520 50.000 0.00 0.00 31.70 4.01
164 165 2.903784 AGTACATGTCAGGGTACAGCAA 59.096 45.455 0.00 0.00 41.74 3.91
165 166 2.536066 AGTACATGTCAGGGTACAGCA 58.464 47.619 0.00 0.00 41.74 4.41
166 167 3.611766 AAGTACATGTCAGGGTACAGC 57.388 47.619 0.00 0.00 41.74 4.40
167 168 5.763204 ACAAAAAGTACATGTCAGGGTACAG 59.237 40.000 0.00 6.48 41.74 2.74
168 169 5.686753 ACAAAAAGTACATGTCAGGGTACA 58.313 37.500 0.00 0.00 41.74 2.90
169 170 7.916914 ATACAAAAAGTACATGTCAGGGTAC 57.083 36.000 0.00 8.75 40.06 3.34
170 171 8.927675 AAATACAAAAAGTACATGTCAGGGTA 57.072 30.769 0.00 0.00 35.05 3.69
171 172 7.833285 AAATACAAAAAGTACATGTCAGGGT 57.167 32.000 0.00 0.00 35.05 4.34
195 196 9.806203 CCACATAATCTGAATGCAAGAATTAAA 57.194 29.630 0.00 0.00 0.00 1.52
196 197 8.415553 CCCACATAATCTGAATGCAAGAATTAA 58.584 33.333 0.00 0.00 0.00 1.40
197 198 7.560991 ACCCACATAATCTGAATGCAAGAATTA 59.439 33.333 0.00 0.00 0.00 1.40
198 199 6.381994 ACCCACATAATCTGAATGCAAGAATT 59.618 34.615 0.00 0.00 0.00 2.17
199 200 5.895534 ACCCACATAATCTGAATGCAAGAAT 59.104 36.000 0.00 0.00 0.00 2.40
200 201 5.263599 ACCCACATAATCTGAATGCAAGAA 58.736 37.500 0.00 0.00 0.00 2.52
201 202 4.858850 ACCCACATAATCTGAATGCAAGA 58.141 39.130 0.00 0.00 0.00 3.02
202 203 6.889301 ATACCCACATAATCTGAATGCAAG 57.111 37.500 0.00 0.00 0.00 4.01
203 204 7.394077 CCATATACCCACATAATCTGAATGCAA 59.606 37.037 0.00 0.00 0.00 4.08
204 205 6.885918 CCATATACCCACATAATCTGAATGCA 59.114 38.462 0.00 0.00 0.00 3.96
205 206 6.183360 GCCATATACCCACATAATCTGAATGC 60.183 42.308 0.00 0.00 0.00 3.56
206 207 6.885918 TGCCATATACCCACATAATCTGAATG 59.114 38.462 0.00 0.00 0.00 2.67
207 208 7.031415 TGCCATATACCCACATAATCTGAAT 57.969 36.000 0.00 0.00 0.00 2.57
208 209 6.446909 TGCCATATACCCACATAATCTGAA 57.553 37.500 0.00 0.00 0.00 3.02
209 210 6.237901 GTTGCCATATACCCACATAATCTGA 58.762 40.000 0.00 0.00 0.00 3.27
210 211 5.415701 GGTTGCCATATACCCACATAATCTG 59.584 44.000 0.00 0.00 0.00 2.90
211 212 5.570320 GGTTGCCATATACCCACATAATCT 58.430 41.667 0.00 0.00 0.00 2.40
212 213 4.394920 CGGTTGCCATATACCCACATAATC 59.605 45.833 0.00 0.00 0.00 1.75
213 214 4.331968 CGGTTGCCATATACCCACATAAT 58.668 43.478 0.00 0.00 0.00 1.28
214 215 3.497048 CCGGTTGCCATATACCCACATAA 60.497 47.826 0.00 0.00 0.00 1.90
215 216 2.039216 CCGGTTGCCATATACCCACATA 59.961 50.000 0.00 0.00 0.00 2.29
216 217 1.202879 CCGGTTGCCATATACCCACAT 60.203 52.381 0.00 0.00 0.00 3.21
217 218 0.181587 CCGGTTGCCATATACCCACA 59.818 55.000 0.00 0.00 0.00 4.17
218 219 1.170290 GCCGGTTGCCATATACCCAC 61.170 60.000 1.90 0.00 0.00 4.61
219 220 1.149627 GCCGGTTGCCATATACCCA 59.850 57.895 1.90 0.00 0.00 4.51
220 221 0.251165 ATGCCGGTTGCCATATACCC 60.251 55.000 1.90 0.00 40.16 3.69
221 222 2.290071 ACTATGCCGGTTGCCATATACC 60.290 50.000 1.90 0.00 40.16 2.73
222 223 3.000727 GACTATGCCGGTTGCCATATAC 58.999 50.000 1.90 0.00 40.16 1.47
223 224 2.027561 GGACTATGCCGGTTGCCATATA 60.028 50.000 1.90 0.00 40.16 0.86
224 225 1.271379 GGACTATGCCGGTTGCCATAT 60.271 52.381 1.90 0.00 40.16 1.78
225 226 0.107831 GGACTATGCCGGTTGCCATA 59.892 55.000 1.90 0.98 40.16 2.74
226 227 1.152963 GGACTATGCCGGTTGCCAT 60.153 57.895 1.90 0.00 40.16 4.40
227 228 2.270850 GGACTATGCCGGTTGCCA 59.729 61.111 1.90 0.00 40.16 4.92
228 229 2.516225 GGGACTATGCCGGTTGCC 60.516 66.667 1.90 0.00 40.16 4.52
229 230 0.751643 ATTGGGACTATGCCGGTTGC 60.752 55.000 1.90 0.00 41.77 4.17
230 231 1.762708 AATTGGGACTATGCCGGTTG 58.237 50.000 1.90 0.00 0.00 3.77
231 232 3.876309 ATAATTGGGACTATGCCGGTT 57.124 42.857 1.90 0.00 0.00 4.44
232 233 3.876309 AATAATTGGGACTATGCCGGT 57.124 42.857 1.90 0.00 0.00 5.28
233 234 5.529581 AAAAATAATTGGGACTATGCCGG 57.470 39.130 0.00 0.00 0.00 6.13
259 260 2.241176 GTGGGATTAAGTGGGATGTCCA 59.759 50.000 0.86 0.00 44.79 4.02
260 261 2.241176 TGTGGGATTAAGTGGGATGTCC 59.759 50.000 0.00 0.00 0.00 4.02
261 262 3.644966 TGTGGGATTAAGTGGGATGTC 57.355 47.619 0.00 0.00 0.00 3.06
262 263 5.725551 TTATGTGGGATTAAGTGGGATGT 57.274 39.130 0.00 0.00 0.00 3.06
263 264 8.742777 CATAATTATGTGGGATTAAGTGGGATG 58.257 37.037 16.03 0.00 0.00 3.51
264 265 8.456124 ACATAATTATGTGGGATTAAGTGGGAT 58.544 33.333 26.51 0.00 44.66 3.85
265 266 7.821566 ACATAATTATGTGGGATTAAGTGGGA 58.178 34.615 26.51 0.00 44.66 4.37
280 281 5.008514 TGTCGCATCAACCCACATAATTATG 59.991 40.000 21.42 21.42 39.55 1.90
281 282 5.129634 TGTCGCATCAACCCACATAATTAT 58.870 37.500 0.00 0.00 0.00 1.28
282 283 4.518249 TGTCGCATCAACCCACATAATTA 58.482 39.130 0.00 0.00 0.00 1.40
283 284 3.351740 TGTCGCATCAACCCACATAATT 58.648 40.909 0.00 0.00 0.00 1.40
284 285 2.997980 TGTCGCATCAACCCACATAAT 58.002 42.857 0.00 0.00 0.00 1.28
285 286 2.481289 TGTCGCATCAACCCACATAA 57.519 45.000 0.00 0.00 0.00 1.90
286 287 2.093235 TGATGTCGCATCAACCCACATA 60.093 45.455 16.67 0.00 0.00 2.29
287 288 1.339920 TGATGTCGCATCAACCCACAT 60.340 47.619 16.67 0.81 0.00 3.21
288 289 0.036022 TGATGTCGCATCAACCCACA 59.964 50.000 16.67 0.00 0.00 4.17
289 290 1.064505 CATGATGTCGCATCAACCCAC 59.935 52.381 20.89 0.00 0.00 4.61
290 291 1.339920 ACATGATGTCGCATCAACCCA 60.340 47.619 20.89 4.34 0.00 4.51
291 292 1.064505 CACATGATGTCGCATCAACCC 59.935 52.381 20.89 0.00 0.00 4.11
292 293 1.064505 CCACATGATGTCGCATCAACC 59.935 52.381 20.89 0.00 0.00 3.77
293 294 1.064505 CCCACATGATGTCGCATCAAC 59.935 52.381 20.89 0.00 0.00 3.18
294 295 1.065564 TCCCACATGATGTCGCATCAA 60.066 47.619 20.89 9.31 0.00 2.57
295 296 0.540923 TCCCACATGATGTCGCATCA 59.459 50.000 19.82 19.82 0.00 3.07
296 297 0.940126 GTCCCACATGATGTCGCATC 59.060 55.000 0.00 11.42 0.00 3.91
297 298 0.543277 AGTCCCACATGATGTCGCAT 59.457 50.000 0.00 0.00 0.00 4.73
298 299 0.108186 GAGTCCCACATGATGTCGCA 60.108 55.000 0.00 0.00 0.00 5.10
299 300 0.811616 GGAGTCCCACATGATGTCGC 60.812 60.000 0.00 0.00 0.00 5.19
300 301 0.179073 GGGAGTCCCACATGATGTCG 60.179 60.000 24.35 0.00 44.65 4.35
301 302 0.179073 CGGGAGTCCCACATGATGTC 60.179 60.000 28.08 0.00 45.83 3.06
302 303 1.907739 CGGGAGTCCCACATGATGT 59.092 57.895 28.08 0.00 45.83 3.06
303 304 1.524621 GCGGGAGTCCCACATGATG 60.525 63.158 28.08 10.69 45.83 3.07
304 305 2.911143 GCGGGAGTCCCACATGAT 59.089 61.111 28.08 0.00 45.83 2.45
305 306 3.770040 CGCGGGAGTCCCACATGA 61.770 66.667 28.08 0.00 45.83 3.07
306 307 4.082523 ACGCGGGAGTCCCACATG 62.083 66.667 28.08 15.56 45.83 3.21
307 308 3.771160 GACGCGGGAGTCCCACAT 61.771 66.667 28.08 6.79 45.83 3.21
308 309 4.988716 AGACGCGGGAGTCCCACA 62.989 66.667 28.08 0.00 45.83 4.17
309 310 4.131088 GAGACGCGGGAGTCCCAC 62.131 72.222 28.08 17.85 45.83 4.61
310 311 3.957435 ATGAGACGCGGGAGTCCCA 62.957 63.158 28.08 6.82 45.83 4.37
311 312 3.140225 GATGAGACGCGGGAGTCCC 62.140 68.421 19.37 19.37 41.83 4.46
312 313 2.413765 GATGAGACGCGGGAGTCC 59.586 66.667 12.47 0.00 41.83 3.85
313 314 2.413765 GGATGAGACGCGGGAGTC 59.586 66.667 12.47 0.00 41.23 3.36
314 315 3.148279 GGGATGAGACGCGGGAGT 61.148 66.667 12.47 0.00 0.00 3.85
315 316 3.147595 TGGGATGAGACGCGGGAG 61.148 66.667 12.47 0.00 0.00 4.30
316 317 3.458163 GTGGGATGAGACGCGGGA 61.458 66.667 12.47 0.00 0.00 5.14
317 318 3.019003 AAGTGGGATGAGACGCGGG 62.019 63.158 12.47 0.00 0.00 6.13
318 319 1.811266 CAAGTGGGATGAGACGCGG 60.811 63.158 12.47 0.00 0.00 6.46
319 320 2.456119 GCAAGTGGGATGAGACGCG 61.456 63.158 3.53 3.53 0.00 6.01
320 321 1.364626 CTGCAAGTGGGATGAGACGC 61.365 60.000 0.00 0.00 0.00 5.19
321 322 1.364626 GCTGCAAGTGGGATGAGACG 61.365 60.000 0.00 0.00 35.30 4.18
322 323 1.028868 GGCTGCAAGTGGGATGAGAC 61.029 60.000 0.50 0.00 35.30 3.36
323 324 1.203441 AGGCTGCAAGTGGGATGAGA 61.203 55.000 0.50 0.00 35.30 3.27
324 325 1.030488 CAGGCTGCAAGTGGGATGAG 61.030 60.000 0.00 0.00 35.30 2.90
325 326 1.001764 CAGGCTGCAAGTGGGATGA 60.002 57.895 0.00 0.00 35.30 2.92
326 327 1.001764 TCAGGCTGCAAGTGGGATG 60.002 57.895 10.34 0.00 35.30 3.51
327 328 1.001641 GTCAGGCTGCAAGTGGGAT 60.002 57.895 10.34 0.00 35.30 3.85
328 329 2.431683 GTCAGGCTGCAAGTGGGA 59.568 61.111 10.34 0.00 35.30 4.37
329 330 3.052082 CGTCAGGCTGCAAGTGGG 61.052 66.667 10.34 0.00 35.30 4.61
330 331 2.281070 ACGTCAGGCTGCAAGTGG 60.281 61.111 10.34 0.00 35.30 4.00
331 332 2.320587 GGACGTCAGGCTGCAAGTG 61.321 63.158 18.91 0.00 35.30 3.16
332 333 2.031163 GGACGTCAGGCTGCAAGT 59.969 61.111 18.91 9.30 35.30 3.16
333 334 1.572085 CTTGGACGTCAGGCTGCAAG 61.572 60.000 18.91 15.50 0.00 4.01
334 335 1.597854 CTTGGACGTCAGGCTGCAA 60.598 57.895 18.91 9.95 0.00 4.08
335 336 2.031012 CTTGGACGTCAGGCTGCA 59.969 61.111 18.91 1.46 0.00 4.41
336 337 1.739562 CTCTTGGACGTCAGGCTGC 60.740 63.158 18.91 4.16 0.00 5.25
337 338 0.318441 TTCTCTTGGACGTCAGGCTG 59.682 55.000 18.91 8.58 0.00 4.85
338 339 1.270907 ATTCTCTTGGACGTCAGGCT 58.729 50.000 18.91 0.00 0.00 4.58
339 340 2.100605 AATTCTCTTGGACGTCAGGC 57.899 50.000 18.91 0.00 0.00 4.85
340 341 3.931578 AGAAATTCTCTTGGACGTCAGG 58.068 45.455 18.91 6.60 0.00 3.86
341 342 5.466728 TCAAAGAAATTCTCTTGGACGTCAG 59.533 40.000 18.91 7.26 44.00 3.51
342 343 5.364778 TCAAAGAAATTCTCTTGGACGTCA 58.635 37.500 18.91 0.27 44.00 4.35
343 344 5.467063 ACTCAAAGAAATTCTCTTGGACGTC 59.533 40.000 7.13 7.13 44.00 4.34
344 345 5.368989 ACTCAAAGAAATTCTCTTGGACGT 58.631 37.500 13.69 0.00 44.00 4.34
356 357 4.440839 GGAATTGCCGACTCAAAGAAAT 57.559 40.909 0.00 0.00 0.00 2.17
372 373 5.009811 CGTCTCCTAGGATAGAAACGGAATT 59.990 44.000 13.12 0.00 42.77 2.17
389 390 1.803366 GAACACCACCGACGTCTCCT 61.803 60.000 14.70 0.00 0.00 3.69
459 460 2.022240 GCCTCCCGAATTCGAGCTCT 62.022 60.000 28.76 0.00 43.02 4.09
1043 2109 0.882484 TGAACGCCATTTCTGTCGCA 60.882 50.000 0.00 0.00 0.00 5.10
1091 2157 3.894947 GAGGAGGAGGACGCGAGC 61.895 72.222 15.93 3.71 0.00 5.03
1604 2681 0.521867 CAACGCCGATGACAAGCATG 60.522 55.000 0.00 0.00 37.34 4.06
1676 2753 4.807304 GGTTCGTACTTTTGTCTGACAGAA 59.193 41.667 6.76 11.72 0.00 3.02
1799 2898 5.939883 TGCAAAATGATTAGCAGACTAGTGT 59.060 36.000 0.00 0.00 32.48 3.55
1808 2907 4.637483 GCTACCTGCAAAATGATTAGCA 57.363 40.909 5.34 5.34 42.31 3.49
1902 3090 4.987408 TGATCATTGCCAATTACCACAG 57.013 40.909 0.00 0.00 0.00 3.66
1969 3159 5.491982 AGTCTCTTTACAACATGGTCATCC 58.508 41.667 0.00 0.00 0.00 3.51
2003 3211 1.681666 CCAGCTTGAGCAGAGGGAA 59.318 57.895 5.70 0.00 45.16 3.97
2010 3218 0.183492 AAAGTGTCCCAGCTTGAGCA 59.817 50.000 5.70 0.00 45.16 4.26
2378 3640 1.521580 TTGCACGCTGAATGATCACA 58.478 45.000 0.00 0.00 0.00 3.58
2400 3662 5.367302 CACAAAAGTTGGGATGGAAATTGT 58.633 37.500 0.00 0.00 35.62 2.71
2409 3671 6.016555 AGGTAAATAGCACAAAAGTTGGGAT 58.983 36.000 0.00 0.00 35.62 3.85
2523 3833 1.465777 ACGTTTGGTTGCGGCTTATAC 59.534 47.619 0.00 0.00 0.00 1.47
2664 3975 5.110814 TGTCCGGTCCATATTTCTCAAAT 57.889 39.130 0.00 0.00 34.90 2.32
2734 4047 8.928448 ACAGCATATTCATATATCGGGTATTCT 58.072 33.333 0.00 0.00 0.00 2.40
3197 4512 3.260884 ACGACCTGAACCAGATAACACAT 59.739 43.478 0.00 0.00 32.44 3.21
3316 4631 2.961062 ACATAAATGCAGGGAATCTGGC 59.039 45.455 0.00 0.00 43.54 4.85
3454 4783 7.932335 TCTCTAATACTTAGCAGAACTAGTGC 58.068 38.462 0.00 0.00 41.54 4.40
3590 4956 3.012518 CTGCCCTATGAGACACAAAAGG 58.987 50.000 0.00 0.00 36.25 3.11
3739 5105 2.368548 GACACAAAAGAGGGGCCAAAAT 59.631 45.455 4.39 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.