Multiple sequence alignment - TraesCS3B01G470300
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G470300
chr3B
100.000
4938
0
0
1
4938
718293821
718288884
0.000000e+00
9119
1
TraesCS3B01G470300
chr3A
90.240
4826
263
91
1
4727
678504639
678499923
0.000000e+00
6111
2
TraesCS3B01G470300
chr3D
89.929
4786
248
95
94
4724
542386273
542381567
0.000000e+00
5952
3
TraesCS3B01G470300
chr3D
93.953
215
13
0
4724
4938
542381521
542381307
4.770000e-85
326
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G470300
chr3B
718288884
718293821
4937
True
9119
9119
100.000
1
4938
1
chr3B.!!$R1
4937
1
TraesCS3B01G470300
chr3A
678499923
678504639
4716
True
6111
6111
90.240
1
4727
1
chr3A.!!$R1
4726
2
TraesCS3B01G470300
chr3D
542381307
542386273
4966
True
3139
5952
91.941
94
4938
2
chr3D.!!$R1
4844
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
411
422
0.032017
AGGTACCACTGCCCTCCTAG
60.032
60.000
15.94
0.0
0.00
3.02
F
482
497
0.037419
GCTACCACCCCGTTAAACGA
60.037
55.000
0.00
0.0
46.05
3.85
F
805
857
0.100325
CGCACACAGCCAACAAAGAA
59.900
50.000
0.00
0.0
41.38
2.52
F
1166
1255
0.179070
GCTCTTCATCCGTTCCCCTC
60.179
60.000
0.00
0.0
0.00
4.30
F
1871
1991
0.109132
GCCAAGGTGCCGAAATTCAG
60.109
55.000
0.00
0.0
0.00
3.02
F
2276
2410
3.119316
CCCTAGAGCGCATAAGTATCCTG
60.119
52.174
11.47
0.0
0.00
3.86
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1323
1424
0.305313
GCAAGCAAACGAACCGTGTA
59.695
50.000
0.00
0.00
39.99
2.90
R
1383
1484
0.965439
CAAGCAAAAACGATGGGGGA
59.035
50.000
0.00
0.00
0.00
4.81
R
1706
1820
2.093983
GAGTAGTGCAAACGCGCG
59.906
61.111
30.96
30.96
44.77
6.86
R
3163
3298
1.529010
CACAAGGCCACCTGCAGAA
60.529
57.895
17.39
0.00
43.89
3.02
R
3289
3424
1.002069
TTCCATTCAGCACCATCCCT
58.998
50.000
0.00
0.00
0.00
4.20
R
4275
4412
0.179936
GCTCAGTTCTGGGGAGATGG
59.820
60.000
1.77
0.00
0.00
3.51
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
42
44
3.998672
GCAACGGGGTCGACCAGA
61.999
66.667
34.40
0.00
42.91
3.86
59
61
4.935578
ACCAGAAAGAATAAAGAAGGGGG
58.064
43.478
0.00
0.00
0.00
5.40
62
64
5.196695
CAGAAAGAATAAAGAAGGGGGAGG
58.803
45.833
0.00
0.00
0.00
4.30
63
65
4.230733
AGAAAGAATAAAGAAGGGGGAGGG
59.769
45.833
0.00
0.00
0.00
4.30
64
66
2.503824
AGAATAAAGAAGGGGGAGGGG
58.496
52.381
0.00
0.00
0.00
4.79
65
67
1.499438
GAATAAAGAAGGGGGAGGGGG
59.501
57.143
0.00
0.00
0.00
5.40
80
82
1.839894
GGGGGATGATGAGGGACAC
59.160
63.158
0.00
0.00
0.00
3.67
83
85
1.051812
GGGATGATGAGGGACACGAT
58.948
55.000
0.00
0.00
0.00
3.73
85
87
1.967066
GGATGATGAGGGACACGATCT
59.033
52.381
0.00
0.00
0.00
2.75
100
102
1.647213
CGATCTGTACCAAACACGACG
59.353
52.381
0.00
0.00
33.45
5.12
122
124
0.456628
GACCTCGGTAGACAAGCTCC
59.543
60.000
0.00
0.00
0.00
4.70
181
183
1.270274
GATGCATGCAACAGTTGTGGA
59.730
47.619
26.68
7.76
0.00
4.02
185
187
1.948834
CATGCAACAGTTGTGGAGTCA
59.051
47.619
14.88
3.54
0.00
3.41
189
191
2.917933
CAACAGTTGTGGAGTCAGGAA
58.082
47.619
4.99
0.00
0.00
3.36
196
198
4.770010
AGTTGTGGAGTCAGGAAAACAAAA
59.230
37.500
0.00
0.00
30.06
2.44
197
199
4.981806
TGTGGAGTCAGGAAAACAAAAG
57.018
40.909
0.00
0.00
0.00
2.27
217
219
2.584965
AGGATGGAGAAGAGAGGAGACA
59.415
50.000
0.00
0.00
0.00
3.41
218
220
3.207321
AGGATGGAGAAGAGAGGAGACAT
59.793
47.826
0.00
0.00
0.00
3.06
228
230
5.194473
AGAGAGGAGACATAGTGGTACAA
57.806
43.478
0.00
0.00
44.16
2.41
236
238
1.141053
CATAGTGGTACAAGAGGGGGC
59.859
57.143
0.00
0.00
44.16
5.80
255
264
5.437060
GGGGCACATAAGAGAAAGACAATA
58.563
41.667
0.00
0.00
0.00
1.90
262
271
6.543831
ACATAAGAGAAAGACAATATGGCACC
59.456
38.462
0.00
0.00
0.00
5.01
265
274
4.225942
AGAGAAAGACAATATGGCACCTCA
59.774
41.667
0.00
0.00
0.00
3.86
280
289
4.161001
GGCACCTCATGGATCTTGAAAATT
59.839
41.667
0.00
0.00
37.04
1.82
292
301
8.202811
TGGATCTTGAAAATTGACAAAATCACA
58.797
29.630
10.94
6.18
36.92
3.58
302
311
1.679153
ACAAAATCACAACGGACACCC
59.321
47.619
0.00
0.00
0.00
4.61
305
314
0.183971
AATCACAACGGACACCCCAA
59.816
50.000
0.00
0.00
34.14
4.12
308
317
1.161843
CACAACGGACACCCCAATAC
58.838
55.000
0.00
0.00
34.14
1.89
318
327
4.457466
GACACCCCAATACCGATGTAAAT
58.543
43.478
0.00
0.00
0.00
1.40
327
337
6.073222
CCAATACCGATGTAAATGTAGCCTTC
60.073
42.308
0.00
0.00
0.00
3.46
346
356
5.507985
GCCTTCCCATTGAAAGAATAATCCG
60.508
44.000
1.64
0.00
31.06
4.18
348
358
3.563808
TCCCATTGAAAGAATAATCCGCG
59.436
43.478
0.00
0.00
0.00
6.46
351
361
3.918258
TTGAAAGAATAATCCGCGTCG
57.082
42.857
4.92
0.00
0.00
5.12
378
388
2.421424
GCACCATGTGACTTTGATCTCC
59.579
50.000
0.00
0.00
35.23
3.71
384
394
4.743057
TGTGACTTTGATCTCCGATGAT
57.257
40.909
0.00
0.00
0.00
2.45
411
422
0.032017
AGGTACCACTGCCCTCCTAG
60.032
60.000
15.94
0.00
0.00
3.02
414
425
3.854669
CCACTGCCCTCCTAGCCG
61.855
72.222
0.00
0.00
0.00
5.52
416
427
1.756950
CACTGCCCTCCTAGCCGTA
60.757
63.158
0.00
0.00
0.00
4.02
439
454
3.159213
AGCATTGGTTGGTTCTCATCA
57.841
42.857
0.00
0.00
29.87
3.07
449
464
5.010012
GGTTGGTTCTCATCATGAAAACACT
59.990
40.000
6.19
0.00
0.00
3.55
467
482
5.993106
ACACTCTGTTTTTCTCAAGCTAC
57.007
39.130
0.00
0.00
0.00
3.58
471
486
4.134563
TCTGTTTTTCTCAAGCTACCACC
58.865
43.478
0.00
0.00
0.00
4.61
472
487
3.219281
TGTTTTTCTCAAGCTACCACCC
58.781
45.455
0.00
0.00
0.00
4.61
473
488
2.557056
GTTTTTCTCAAGCTACCACCCC
59.443
50.000
0.00
0.00
0.00
4.95
474
489
0.323629
TTTCTCAAGCTACCACCCCG
59.676
55.000
0.00
0.00
0.00
5.73
477
492
0.899720
CTCAAGCTACCACCCCGTTA
59.100
55.000
0.00
0.00
0.00
3.18
478
493
1.276989
CTCAAGCTACCACCCCGTTAA
59.723
52.381
0.00
0.00
0.00
2.01
479
494
1.698532
TCAAGCTACCACCCCGTTAAA
59.301
47.619
0.00
0.00
0.00
1.52
480
495
1.808343
CAAGCTACCACCCCGTTAAAC
59.192
52.381
0.00
0.00
0.00
2.01
482
497
0.037419
GCTACCACCCCGTTAAACGA
60.037
55.000
0.00
0.00
46.05
3.85
483
498
1.405933
GCTACCACCCCGTTAAACGAT
60.406
52.381
0.00
0.00
46.05
3.73
485
500
0.397564
ACCACCCCGTTAAACGATGT
59.602
50.000
0.00
0.00
46.05
3.06
486
501
1.622811
ACCACCCCGTTAAACGATGTA
59.377
47.619
0.00
0.00
46.05
2.29
487
502
2.001872
CCACCCCGTTAAACGATGTAC
58.998
52.381
0.00
0.00
46.05
2.90
489
504
3.065655
CACCCCGTTAAACGATGTACAA
58.934
45.455
0.00
0.00
46.05
2.41
496
511
5.390040
CCGTTAAACGATGTACAATCAGCAA
60.390
40.000
0.00
0.00
46.05
3.91
499
514
2.009774
ACGATGTACAATCAGCAAGGC
58.990
47.619
0.00
0.00
0.00
4.35
500
515
2.009051
CGATGTACAATCAGCAAGGCA
58.991
47.619
0.00
0.00
0.00
4.75
517
532
2.174060
GCAAATTAGCCTACGTGCAC
57.826
50.000
6.82
6.82
32.29
4.57
520
535
2.742053
CAAATTAGCCTACGTGCACACT
59.258
45.455
18.64
8.00
0.00
3.55
532
551
1.102154
TGCACACTTGTTGTCCTTGG
58.898
50.000
0.00
0.00
35.67
3.61
533
552
0.249031
GCACACTTGTTGTCCTTGGC
60.249
55.000
0.00
0.00
35.67
4.52
534
553
1.392589
CACACTTGTTGTCCTTGGCT
58.607
50.000
0.00
0.00
35.67
4.75
535
554
1.334869
CACACTTGTTGTCCTTGGCTC
59.665
52.381
0.00
0.00
35.67
4.70
536
555
0.954452
CACTTGTTGTCCTTGGCTCC
59.046
55.000
0.00
0.00
0.00
4.70
537
556
0.846693
ACTTGTTGTCCTTGGCTCCT
59.153
50.000
0.00
0.00
0.00
3.69
538
557
1.215423
ACTTGTTGTCCTTGGCTCCTT
59.785
47.619
0.00
0.00
0.00
3.36
539
558
1.610522
CTTGTTGTCCTTGGCTCCTTG
59.389
52.381
0.00
0.00
0.00
3.61
553
572
2.222819
GCTCCTTGCTACGTTTCATTCG
60.223
50.000
0.00
0.00
38.95
3.34
581
605
2.095466
CCGGAACACGCACACAATTATT
60.095
45.455
0.00
0.00
42.52
1.40
584
608
4.612712
CGGAACACGCACACAATTATTCTT
60.613
41.667
0.00
0.00
34.82
2.52
594
618
7.361371
CGCACACAATTATTCTTACTTAACCCA
60.361
37.037
0.00
0.00
0.00
4.51
613
637
4.404098
ACCGCACCCATCCCGTTC
62.404
66.667
0.00
0.00
0.00
3.95
656
688
1.153046
CAACCGGAACACCACCACT
60.153
57.895
9.46
0.00
0.00
4.00
657
689
1.153046
AACCGGAACACCACCACTG
60.153
57.895
9.46
0.00
0.00
3.66
658
690
2.978010
CCGGAACACCACCACTGC
60.978
66.667
0.00
0.00
0.00
4.40
663
695
0.882927
GAACACCACCACTGCGCTAA
60.883
55.000
9.73
0.00
0.00
3.09
667
699
0.682852
ACCACCACTGCGCTAAACTA
59.317
50.000
9.73
0.00
0.00
2.24
668
700
1.076332
CCACCACTGCGCTAAACTAC
58.924
55.000
9.73
0.00
0.00
2.73
679
728
3.733077
GCGCTAAACTACCACACGAGTAT
60.733
47.826
0.00
0.00
0.00
2.12
680
729
4.496341
GCGCTAAACTACCACACGAGTATA
60.496
45.833
0.00
0.00
0.00
1.47
681
730
4.966366
CGCTAAACTACCACACGAGTATAC
59.034
45.833
0.00
0.00
0.00
1.47
682
731
5.277047
GCTAAACTACCACACGAGTATACC
58.723
45.833
0.00
0.00
0.00
2.73
683
732
5.163622
GCTAAACTACCACACGAGTATACCA
60.164
44.000
0.00
0.00
0.00
3.25
684
733
4.978083
AACTACCACACGAGTATACCAG
57.022
45.455
0.00
0.00
0.00
4.00
685
734
3.285484
ACTACCACACGAGTATACCAGG
58.715
50.000
0.00
0.00
0.00
4.45
686
735
2.519771
ACCACACGAGTATACCAGGA
57.480
50.000
0.00
0.00
0.00
3.86
687
736
2.376109
ACCACACGAGTATACCAGGAG
58.624
52.381
0.00
0.00
0.00
3.69
688
737
1.681793
CCACACGAGTATACCAGGAGG
59.318
57.143
0.00
0.00
42.21
4.30
689
738
2.651455
CACACGAGTATACCAGGAGGA
58.349
52.381
0.00
0.00
38.69
3.71
690
739
2.619177
CACACGAGTATACCAGGAGGAG
59.381
54.545
0.00
0.00
38.69
3.69
691
740
2.508716
ACACGAGTATACCAGGAGGAGA
59.491
50.000
0.00
0.00
38.69
3.71
692
741
3.138653
ACACGAGTATACCAGGAGGAGAT
59.861
47.826
0.00
0.00
38.69
2.75
693
742
3.754323
CACGAGTATACCAGGAGGAGATC
59.246
52.174
0.00
0.00
38.69
2.75
798
850
4.539083
ACGGACGCACACAGCCAA
62.539
61.111
0.00
0.00
41.38
4.52
799
851
4.012895
CGGACGCACACAGCCAAC
62.013
66.667
0.00
0.00
41.38
3.77
800
852
2.899838
GGACGCACACAGCCAACA
60.900
61.111
0.00
0.00
41.38
3.33
801
853
2.477176
GGACGCACACAGCCAACAA
61.477
57.895
0.00
0.00
41.38
2.83
802
854
1.431440
GACGCACACAGCCAACAAA
59.569
52.632
0.00
0.00
41.38
2.83
803
855
0.592247
GACGCACACAGCCAACAAAG
60.592
55.000
0.00
0.00
41.38
2.77
804
856
1.029408
ACGCACACAGCCAACAAAGA
61.029
50.000
0.00
0.00
41.38
2.52
805
857
0.100325
CGCACACAGCCAACAAAGAA
59.900
50.000
0.00
0.00
41.38
2.52
1111
1199
3.603330
ATCCCCAGGCAAGTCCCCT
62.603
63.158
0.00
0.00
34.51
4.79
1125
1213
1.004436
TCCCCTAACCAATCCCCAAC
58.996
55.000
0.00
0.00
0.00
3.77
1145
1233
1.770518
CCCCCTAATCCCCTTCGCT
60.771
63.158
0.00
0.00
0.00
4.93
1147
1235
1.367840
CCCTAATCCCCTTCGCTCG
59.632
63.158
0.00
0.00
0.00
5.03
1148
1236
1.301009
CCTAATCCCCTTCGCTCGC
60.301
63.158
0.00
0.00
0.00
5.03
1151
1239
0.755698
TAATCCCCTTCGCTCGCTCT
60.756
55.000
0.00
0.00
0.00
4.09
1152
1240
1.617947
AATCCCCTTCGCTCGCTCTT
61.618
55.000
0.00
0.00
0.00
2.85
1154
1242
2.573869
CCCTTCGCTCGCTCTTCA
59.426
61.111
0.00
0.00
0.00
3.02
1156
1244
0.873743
CCCTTCGCTCGCTCTTCATC
60.874
60.000
0.00
0.00
0.00
2.92
1158
1246
1.205485
CTTCGCTCGCTCTTCATCCG
61.205
60.000
0.00
0.00
0.00
4.18
1159
1247
1.934220
TTCGCTCGCTCTTCATCCGT
61.934
55.000
0.00
0.00
0.00
4.69
1160
1248
1.517257
CGCTCGCTCTTCATCCGTT
60.517
57.895
0.00
0.00
0.00
4.44
1166
1255
0.179070
GCTCTTCATCCGTTCCCCTC
60.179
60.000
0.00
0.00
0.00
4.30
1173
1262
2.930777
ATCCGTTCCCCTCCTCTCCG
62.931
65.000
0.00
0.00
0.00
4.63
1201
1290
1.666234
GGATTCGCTCGGATCTGCC
60.666
63.158
10.05
0.00
0.00
4.85
1302
1403
2.323447
GCGGAAATTAGGTCGCGC
59.677
61.111
0.00
0.00
38.82
6.86
1307
1408
0.507358
GAAATTAGGTCGCGCGGATC
59.493
55.000
31.69
19.67
0.00
3.36
1310
1411
1.745320
ATTAGGTCGCGCGGATCCTT
61.745
55.000
32.78
20.64
31.41
3.36
1331
1432
4.973055
TGGCGCGCTTACACGGTT
62.973
61.111
32.29
0.00
0.00
4.44
1332
1433
4.143363
GGCGCGCTTACACGGTTC
62.143
66.667
32.29
5.91
0.00
3.62
1333
1434
4.479121
GCGCGCTTACACGGTTCG
62.479
66.667
26.67
0.00
0.00
3.95
1334
1435
3.101428
CGCGCTTACACGGTTCGT
61.101
61.111
5.56
0.00
42.36
3.85
1335
1436
2.651137
CGCGCTTACACGGTTCGTT
61.651
57.895
5.56
0.00
38.32
3.85
1336
1437
1.566077
GCGCTTACACGGTTCGTTT
59.434
52.632
0.00
0.00
38.32
3.60
1337
1438
0.720173
GCGCTTACACGGTTCGTTTG
60.720
55.000
0.00
0.00
38.32
2.93
1338
1439
0.720173
CGCTTACACGGTTCGTTTGC
60.720
55.000
0.00
0.00
38.32
3.68
1343
1444
1.657181
CACGGTTCGTTTGCTTGCC
60.657
57.895
0.00
0.00
38.32
4.52
1344
1445
2.050442
CGGTTCGTTTGCTTGCCC
60.050
61.111
0.00
0.00
0.00
5.36
1366
1467
2.672651
TGTCGCCGGACTCCGTTA
60.673
61.111
16.35
0.00
46.80
3.18
1380
1481
4.171103
GTTACGGCGGCTCCCCAT
62.171
66.667
13.24
0.00
0.00
4.00
1383
1484
2.487274
TTACGGCGGCTCCCCATTTT
62.487
55.000
13.24
0.00
0.00
1.82
1398
1499
3.333804
CCATTTTCCCCCATCGTTTTTG
58.666
45.455
0.00
0.00
0.00
2.44
1399
1500
2.535012
TTTTCCCCCATCGTTTTTGC
57.465
45.000
0.00
0.00
0.00
3.68
1400
1501
1.710816
TTTCCCCCATCGTTTTTGCT
58.289
45.000
0.00
0.00
0.00
3.91
1402
1503
0.965439
TCCCCCATCGTTTTTGCTTG
59.035
50.000
0.00
0.00
0.00
4.01
1404
1505
0.678950
CCCCATCGTTTTTGCTTGGT
59.321
50.000
0.00
0.00
0.00
3.67
1407
1508
1.526464
CCATCGTTTTTGCTTGGTTGC
59.474
47.619
0.00
0.00
0.00
4.17
1460
1562
4.980805
GGCGTGCGACACAGGGAA
62.981
66.667
9.95
0.00
33.40
3.97
1461
1563
3.712881
GCGTGCGACACAGGGAAC
61.713
66.667
9.95
0.00
33.40
3.62
1464
1575
4.980805
TGCGACACAGGGAACGGC
62.981
66.667
0.00
0.00
0.00
5.68
1493
1604
4.463879
CCGCACTGCTAGCCTGCT
62.464
66.667
24.41
0.00
0.00
4.24
1494
1605
2.889503
CGCACTGCTAGCCTGCTC
60.890
66.667
24.41
6.89
0.00
4.26
1495
1606
2.889503
GCACTGCTAGCCTGCTCG
60.890
66.667
21.58
3.87
0.00
5.03
1511
1622
1.405661
GCTCGTTCCCTCCTCGAAATT
60.406
52.381
0.00
0.00
33.32
1.82
1537
1648
7.971168
TGTTTGTTAATGCCACTATTTTATCCG
59.029
33.333
0.00
0.00
0.00
4.18
1636
1750
3.236137
GAACGAGGCGCGACGTAC
61.236
66.667
25.18
10.94
44.57
3.67
1656
1770
6.973474
ACGTACAGACTATTTTAGAGCATGTC
59.027
38.462
0.00
0.00
0.00
3.06
1658
1772
7.649705
CGTACAGACTATTTTAGAGCATGTCAT
59.350
37.037
0.00
0.00
0.00
3.06
1701
1815
9.347240
CATATCCTGATTAAGTTGACTTTGGAT
57.653
33.333
1.20
9.71
37.40
3.41
1706
1820
0.598065
AAGTTGACTTTGGATGCGCC
59.402
50.000
4.18
0.00
30.82
6.53
1768
1887
3.004862
ACGAACGGGAAATGGTGATTAC
58.995
45.455
0.00
0.00
0.00
1.89
1816
1935
2.956987
CTGCAAGCCTTGAACGGG
59.043
61.111
9.04
0.00
0.00
5.28
1841
1961
9.678941
GGATAGAAAAAGGAAACAAGTTTACTG
57.321
33.333
10.97
0.00
42.60
2.74
1850
1970
5.063564
GGAAACAAGTTTACTGGATCGCTAG
59.936
44.000
0.67
0.00
32.11
3.42
1871
1991
0.109132
GCCAAGGTGCCGAAATTCAG
60.109
55.000
0.00
0.00
0.00
3.02
1900
2033
3.385111
GGTGAACAACATACCCCACAAAA
59.615
43.478
0.00
0.00
0.00
2.44
2019
2152
6.385759
TGCTTACAGTTTGGGGATTATCTCTA
59.614
38.462
0.00
0.00
0.00
2.43
2091
2224
4.451435
GGTTTCCTGCGGATAAAGCTATAC
59.549
45.833
12.53
0.00
35.28
1.47
2108
2241
7.639162
AGCTATACTAAAATCAACGATTCCG
57.361
36.000
0.00
0.00
42.50
4.30
2123
2256
5.285798
CGATTCCGTTGGTTAAAAAGCTA
57.714
39.130
0.00
0.00
0.00
3.32
2276
2410
3.119316
CCCTAGAGCGCATAAGTATCCTG
60.119
52.174
11.47
0.00
0.00
3.86
2444
2579
7.164803
GCTTTATTTGATCAGGCTACCTCTAT
58.835
38.462
0.00
0.00
0.00
1.98
2655
2790
6.822667
TCAGAATTCTTCTATTGCTTTGCA
57.177
33.333
4.86
0.00
38.11
4.08
2758
2893
5.250543
TGATTATTGTGGAGAAAGGACTGGA
59.749
40.000
0.00
0.00
0.00
3.86
3205
3340
4.164030
TGCTTATTGGATCTTAGCCACAGA
59.836
41.667
0.00
0.00
34.56
3.41
3289
3424
2.028112
GGCATGGTCAAGAGTGTCAGTA
60.028
50.000
0.00
0.00
0.00
2.74
3367
3502
5.684626
GCGAAATGATGGAAATCATGAAGTC
59.315
40.000
0.00
0.00
40.81
3.01
3457
3592
4.583871
CTCTAAATTTCAGGTCACAGCCT
58.416
43.478
0.00
0.00
39.99
4.58
3619
3754
0.743097
GGAAGATCATGCTTGTGGGC
59.257
55.000
0.00
0.00
0.00
5.36
3631
3766
3.225798
GTGGGCCTGCTGTGCAAA
61.226
61.111
4.53
0.00
38.41
3.68
3793
3928
0.254178
TCATGCTCTCCTTGAAGGCC
59.746
55.000
6.30
0.00
34.61
5.19
3853
3988
1.376037
GGAGTGGCAGAAGGTTCCG
60.376
63.158
0.00
0.00
0.00
4.30
3911
4046
2.992273
GCATGTGGCACGGCATTCA
61.992
57.895
23.76
1.89
43.97
2.57
4061
4196
8.945481
AATTCATGTCAAAGTGATTGTTTTCA
57.055
26.923
0.00
0.00
40.11
2.69
4091
4226
0.039527
AAGCAATCGGACCGTTTTGC
60.040
50.000
31.69
31.69
42.37
3.68
4098
4233
1.202557
TCGGACCGTTTTGCTACTGTT
60.203
47.619
14.79
0.00
0.00
3.16
4111
4246
7.759489
TTTGCTACTGTTGGTTTTATCATCT
57.241
32.000
0.00
0.00
0.00
2.90
4213
4348
6.940739
AGAGCAGACATCTGTTACTGTATTT
58.059
36.000
10.50
0.00
45.45
1.40
4214
4349
7.038659
AGAGCAGACATCTGTTACTGTATTTC
58.961
38.462
10.50
0.00
45.45
2.17
4246
4383
2.031068
TGTTCCGTTGTTGTCATGTTCG
59.969
45.455
0.00
0.00
0.00
3.95
4283
4420
2.175715
ACTAAATCTTGGGCCATCTCCC
59.824
50.000
7.26
0.00
46.73
4.30
4383
4550
2.093306
TGCTTGTAGTGTAATGCGCT
57.907
45.000
9.73
0.00
41.45
5.92
4405
4572
4.968259
TGATACAGTAATATGGTGGTGCC
58.032
43.478
0.00
0.00
37.90
5.01
4480
4647
2.937149
CACCAAGATGAGATGCTGACAG
59.063
50.000
0.00
0.00
0.00
3.51
4481
4648
2.836372
ACCAAGATGAGATGCTGACAGA
59.164
45.455
6.65
0.00
0.00
3.41
4557
4724
1.037493
AACGCAGGTTCCTTTTTCCC
58.963
50.000
0.00
0.00
0.00
3.97
4592
4759
3.369921
CAGGAAAACTGCCAGGCC
58.630
61.111
9.64
0.00
40.97
5.19
4667
4852
3.608316
TGCAAGGCATATTTTTGGGTC
57.392
42.857
0.00
0.00
31.71
4.46
4673
4858
1.797348
GCATATTTTTGGGTCGCCACG
60.797
52.381
0.00
0.00
0.00
4.94
4685
4870
0.102481
TCGCCACGAAGATAAGGAGC
59.898
55.000
0.00
0.00
31.06
4.70
4687
4872
1.337071
CGCCACGAAGATAAGGAGCTA
59.663
52.381
0.00
0.00
0.00
3.32
4731
4962
4.600012
GTGCTATTCATACTTTGCACGT
57.400
40.909
0.00
0.00
40.67
4.49
4732
4963
4.969816
GTGCTATTCATACTTTGCACGTT
58.030
39.130
0.00
0.00
40.67
3.99
4738
4969
8.070171
GCTATTCATACTTTGCACGTTTCATAT
58.930
33.333
0.00
0.00
0.00
1.78
4741
4972
9.716507
ATTCATACTTTGCACGTTTCATATTAC
57.283
29.630
0.00
0.00
0.00
1.89
4763
4994
9.712305
ATTACGAAAGTTATATCATGGAGGAAG
57.288
33.333
0.00
0.00
46.40
3.46
4797
5028
0.324943
AGAAGGAACATCCACACCCG
59.675
55.000
0.00
0.00
39.61
5.28
4798
5029
0.036306
GAAGGAACATCCACACCCGT
59.964
55.000
0.00
0.00
39.61
5.28
4803
5034
2.159382
GAACATCCACACCCGTGAAAT
58.841
47.619
0.96
0.00
46.80
2.17
4831
5062
0.031585
CTTCGACACGACACCCTTGA
59.968
55.000
0.00
0.00
34.89
3.02
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
15
16
3.423154
CCCGTTGCGCTTGTCTCC
61.423
66.667
9.73
0.00
0.00
3.71
39
41
5.196695
CCTCCCCCTTCTTTATTCTTTCTG
58.803
45.833
0.00
0.00
0.00
3.02
42
44
3.272285
CCCCTCCCCCTTCTTTATTCTTT
59.728
47.826
0.00
0.00
0.00
2.52
62
64
1.839894
GTGTCCCTCATCATCCCCC
59.160
63.158
0.00
0.00
0.00
5.40
63
65
1.048724
TCGTGTCCCTCATCATCCCC
61.049
60.000
0.00
0.00
0.00
4.81
64
66
1.001406
GATCGTGTCCCTCATCATCCC
59.999
57.143
0.00
0.00
0.00
3.85
65
67
1.967066
AGATCGTGTCCCTCATCATCC
59.033
52.381
0.00
0.00
0.00
3.51
70
72
2.032620
GGTACAGATCGTGTCCCTCAT
58.967
52.381
0.00
0.00
40.94
2.90
71
73
1.272258
TGGTACAGATCGTGTCCCTCA
60.272
52.381
0.00
0.40
40.94
3.86
74
76
2.289195
TGTTTGGTACAGATCGTGTCCC
60.289
50.000
0.00
1.65
42.39
4.46
80
82
1.647213
CGTCGTGTTTGGTACAGATCG
59.353
52.381
0.00
0.00
42.39
3.69
83
85
2.293955
TCATCGTCGTGTTTGGTACAGA
59.706
45.455
0.00
0.00
42.39
3.41
85
87
2.396601
GTCATCGTCGTGTTTGGTACA
58.603
47.619
0.00
0.00
0.00
2.90
90
92
0.708370
CGAGGTCATCGTCGTGTTTG
59.292
55.000
0.00
0.00
46.62
2.93
91
93
3.102515
CGAGGTCATCGTCGTGTTT
57.897
52.632
0.00
0.00
46.62
2.83
100
102
1.751924
AGCTTGTCTACCGAGGTCATC
59.248
52.381
0.00
0.00
28.77
2.92
122
124
1.081376
GGCATCGATCCGACGGTAG
60.081
63.158
14.79
6.72
39.18
3.18
169
171
2.620251
TCCTGACTCCACAACTGTTG
57.380
50.000
18.44
18.44
0.00
3.33
171
173
3.279434
GTTTTCCTGACTCCACAACTGT
58.721
45.455
0.00
0.00
0.00
3.55
173
175
3.644966
TGTTTTCCTGACTCCACAACT
57.355
42.857
0.00
0.00
0.00
3.16
181
183
4.803452
TCCATCCTTTTGTTTTCCTGACT
58.197
39.130
0.00
0.00
0.00
3.41
185
187
5.705400
TCTTCTCCATCCTTTTGTTTTCCT
58.295
37.500
0.00
0.00
0.00
3.36
189
191
5.073691
TCCTCTCTTCTCCATCCTTTTGTTT
59.926
40.000
0.00
0.00
0.00
2.83
196
198
2.584965
TGTCTCCTCTCTTCTCCATCCT
59.415
50.000
0.00
0.00
0.00
3.24
197
199
3.025322
TGTCTCCTCTCTTCTCCATCC
57.975
52.381
0.00
0.00
0.00
3.51
217
219
1.274184
TGCCCCCTCTTGTACCACTAT
60.274
52.381
0.00
0.00
0.00
2.12
218
220
0.117541
TGCCCCCTCTTGTACCACTA
59.882
55.000
0.00
0.00
0.00
2.74
228
230
2.270434
TTCTCTTATGTGCCCCCTCT
57.730
50.000
0.00
0.00
0.00
3.69
236
238
7.412853
GTGCCATATTGTCTTTCTCTTATGTG
58.587
38.462
0.00
0.00
0.00
3.21
255
264
1.848388
TCAAGATCCATGAGGTGCCAT
59.152
47.619
0.00
0.00
35.89
4.40
262
271
8.821147
TTTTGTCAATTTTCAAGATCCATGAG
57.179
30.769
0.00
0.00
0.00
2.90
265
274
9.211485
GTGATTTTGTCAATTTTCAAGATCCAT
57.789
29.630
14.55
0.00
38.90
3.41
280
289
2.356382
GGTGTCCGTTGTGATTTTGTCA
59.644
45.455
0.00
0.00
0.00
3.58
292
301
1.193462
TCGGTATTGGGGTGTCCGTT
61.193
55.000
0.00
0.00
41.58
4.44
302
311
5.305585
AGGCTACATTTACATCGGTATTGG
58.694
41.667
0.00
0.00
0.00
3.16
305
314
5.512576
GGGAAGGCTACATTTACATCGGTAT
60.513
44.000
0.00
0.00
0.00
2.73
308
317
3.139077
GGGAAGGCTACATTTACATCGG
58.861
50.000
0.00
0.00
0.00
4.18
318
327
4.380843
TTCTTTCAATGGGAAGGCTACA
57.619
40.909
0.00
0.00
36.72
2.74
327
337
3.315191
ACGCGGATTATTCTTTCAATGGG
59.685
43.478
12.47
0.00
0.00
4.00
346
356
2.742372
ATGGTGCCTTGTCGACGC
60.742
61.111
11.62
9.03
0.00
5.19
348
358
0.602638
TCACATGGTGCCTTGTCGAC
60.603
55.000
9.11
9.11
32.98
4.20
351
361
1.609208
AAGTCACATGGTGCCTTGTC
58.391
50.000
6.76
0.00
30.41
3.18
378
388
1.541233
GGTACCTTCAGCCCATCATCG
60.541
57.143
4.06
0.00
0.00
3.84
384
394
2.066340
CAGTGGTACCTTCAGCCCA
58.934
57.895
14.36
0.00
0.00
5.36
411
422
0.109319
CCAACCAATGCTTGTACGGC
60.109
55.000
4.03
4.03
0.00
5.68
414
425
3.568007
TGAGAACCAACCAATGCTTGTAC
59.432
43.478
0.00
0.00
0.00
2.90
416
427
2.665165
TGAGAACCAACCAATGCTTGT
58.335
42.857
0.00
0.00
0.00
3.16
449
464
4.134563
GGTGGTAGCTTGAGAAAAACAGA
58.865
43.478
0.00
0.00
0.00
3.41
467
482
2.001872
GTACATCGTTTAACGGGGTGG
58.998
52.381
17.59
5.61
42.81
4.61
471
486
4.493545
GCTGATTGTACATCGTTTAACGGG
60.494
45.833
17.59
12.28
42.81
5.28
472
487
4.092237
TGCTGATTGTACATCGTTTAACGG
59.908
41.667
17.59
4.97
42.81
4.44
473
488
5.198116
TGCTGATTGTACATCGTTTAACG
57.802
39.130
11.60
11.60
44.19
3.18
474
489
6.021596
CCTTGCTGATTGTACATCGTTTAAC
58.978
40.000
0.00
0.00
0.00
2.01
477
492
3.119849
GCCTTGCTGATTGTACATCGTTT
60.120
43.478
0.00
0.00
0.00
3.60
478
493
2.420022
GCCTTGCTGATTGTACATCGTT
59.580
45.455
0.00
0.00
0.00
3.85
479
494
2.009774
GCCTTGCTGATTGTACATCGT
58.990
47.619
0.00
0.00
0.00
3.73
480
495
2.009051
TGCCTTGCTGATTGTACATCG
58.991
47.619
0.00
0.00
0.00
3.84
482
497
5.410355
AATTTGCCTTGCTGATTGTACAT
57.590
34.783
0.00
0.00
0.00
2.29
483
498
4.870123
AATTTGCCTTGCTGATTGTACA
57.130
36.364
0.00
0.00
0.00
2.90
485
500
4.997565
GCTAATTTGCCTTGCTGATTGTA
58.002
39.130
0.00
0.00
0.00
2.41
486
501
3.853475
GCTAATTTGCCTTGCTGATTGT
58.147
40.909
0.00
0.00
0.00
2.71
499
514
2.742053
AGTGTGCACGTAGGCTAATTTG
59.258
45.455
13.13
0.00
36.20
2.32
500
515
3.053831
AGTGTGCACGTAGGCTAATTT
57.946
42.857
13.13
0.00
36.20
1.82
517
532
0.954452
GGAGCCAAGGACAACAAGTG
59.046
55.000
0.00
0.00
0.00
3.16
520
535
1.691196
CAAGGAGCCAAGGACAACAA
58.309
50.000
0.00
0.00
0.00
2.83
532
551
2.222819
CGAATGAAACGTAGCAAGGAGC
60.223
50.000
0.00
0.00
46.19
4.70
533
552
2.222819
GCGAATGAAACGTAGCAAGGAG
60.223
50.000
0.00
0.00
0.00
3.69
534
553
1.730064
GCGAATGAAACGTAGCAAGGA
59.270
47.619
0.00
0.00
0.00
3.36
535
554
1.732259
AGCGAATGAAACGTAGCAAGG
59.268
47.619
0.00
0.00
0.00
3.61
536
555
2.222819
GGAGCGAATGAAACGTAGCAAG
60.223
50.000
0.00
0.00
0.00
4.01
537
556
1.730064
GGAGCGAATGAAACGTAGCAA
59.270
47.619
0.00
0.00
0.00
3.91
538
557
1.337354
TGGAGCGAATGAAACGTAGCA
60.337
47.619
0.00
0.00
0.00
3.49
539
558
1.355971
TGGAGCGAATGAAACGTAGC
58.644
50.000
0.00
0.00
0.00
3.58
581
605
1.693062
TGCGGTGTGGGTTAAGTAAGA
59.307
47.619
0.00
0.00
0.00
2.10
584
608
0.035176
GGTGCGGTGTGGGTTAAGTA
59.965
55.000
0.00
0.00
0.00
2.24
613
637
4.025401
GGGTTGCTTGTCGTGCCG
62.025
66.667
0.00
0.00
0.00
5.69
644
676
0.882927
TTAGCGCAGTGGTGGTGTTC
60.883
55.000
11.47
0.00
36.50
3.18
656
688
0.314618
TCGTGTGGTAGTTTAGCGCA
59.685
50.000
11.47
0.00
43.49
6.09
657
689
0.989890
CTCGTGTGGTAGTTTAGCGC
59.010
55.000
0.00
0.00
37.21
5.92
658
690
2.342910
ACTCGTGTGGTAGTTTAGCG
57.657
50.000
0.00
0.00
0.00
4.26
663
695
3.698040
CCTGGTATACTCGTGTGGTAGTT
59.302
47.826
2.25
0.00
0.00
2.24
667
699
2.376109
CTCCTGGTATACTCGTGTGGT
58.624
52.381
2.25
0.00
0.00
4.16
668
700
1.681793
CCTCCTGGTATACTCGTGTGG
59.318
57.143
2.25
0.00
0.00
4.17
683
732
1.977293
GCTTTGCGGGATCTCCTCCT
61.977
60.000
0.00
0.00
44.28
3.69
684
733
1.524849
GCTTTGCGGGATCTCCTCC
60.525
63.158
0.00
0.00
44.11
4.30
685
734
4.132999
GCTTTGCGGGATCTCCTC
57.867
61.111
0.00
0.00
35.95
3.71
733
785
2.158449
GCTGGATTATATGCTGTGCGTC
59.842
50.000
0.00
0.00
0.00
5.19
734
786
2.146342
GCTGGATTATATGCTGTGCGT
58.854
47.619
0.00
0.00
0.00
5.24
784
836
0.592247
CTTTGTTGGCTGTGTGCGTC
60.592
55.000
0.00
0.00
44.05
5.19
787
839
1.135141
TGTTCTTTGTTGGCTGTGTGC
60.135
47.619
0.00
0.00
41.94
4.57
790
842
3.229276
TGTTGTTCTTTGTTGGCTGTG
57.771
42.857
0.00
0.00
0.00
3.66
791
843
3.951775
TTGTTGTTCTTTGTTGGCTGT
57.048
38.095
0.00
0.00
0.00
4.40
792
844
4.493547
TCTTTGTTGTTCTTTGTTGGCTG
58.506
39.130
0.00
0.00
0.00
4.85
793
845
4.462483
TCTCTTTGTTGTTCTTTGTTGGCT
59.538
37.500
0.00
0.00
0.00
4.75
794
846
4.562789
GTCTCTTTGTTGTTCTTTGTTGGC
59.437
41.667
0.00
0.00
0.00
4.52
795
847
5.572896
GTGTCTCTTTGTTGTTCTTTGTTGG
59.427
40.000
0.00
0.00
0.00
3.77
796
848
6.088085
GTGTGTCTCTTTGTTGTTCTTTGTTG
59.912
38.462
0.00
0.00
0.00
3.33
797
849
6.149633
GTGTGTCTCTTTGTTGTTCTTTGTT
58.850
36.000
0.00
0.00
0.00
2.83
798
850
5.616866
CGTGTGTCTCTTTGTTGTTCTTTGT
60.617
40.000
0.00
0.00
0.00
2.83
799
851
4.788100
CGTGTGTCTCTTTGTTGTTCTTTG
59.212
41.667
0.00
0.00
0.00
2.77
800
852
4.671766
GCGTGTGTCTCTTTGTTGTTCTTT
60.672
41.667
0.00
0.00
0.00
2.52
801
853
3.181510
GCGTGTGTCTCTTTGTTGTTCTT
60.182
43.478
0.00
0.00
0.00
2.52
802
854
2.351726
GCGTGTGTCTCTTTGTTGTTCT
59.648
45.455
0.00
0.00
0.00
3.01
803
855
2.538939
GGCGTGTGTCTCTTTGTTGTTC
60.539
50.000
0.00
0.00
0.00
3.18
804
856
1.400494
GGCGTGTGTCTCTTTGTTGTT
59.600
47.619
0.00
0.00
0.00
2.83
805
857
1.014352
GGCGTGTGTCTCTTTGTTGT
58.986
50.000
0.00
0.00
0.00
3.32
865
917
0.167689
CTTTTCTCTCGCTGCCTTGC
59.832
55.000
0.00
0.00
0.00
4.01
866
918
0.167689
GCTTTTCTCTCGCTGCCTTG
59.832
55.000
0.00
0.00
0.00
3.61
943
1027
4.154347
GCCTCTGTGCCCCTCTCG
62.154
72.222
0.00
0.00
0.00
4.04
944
1028
4.154347
CGCCTCTGTGCCCCTCTC
62.154
72.222
0.00
0.00
0.00
3.20
1111
1199
2.097967
GGGGGTTGGGGATTGGTTA
58.902
57.895
0.00
0.00
0.00
2.85
1131
1219
0.319125
GAGCGAGCGAAGGGGATTAG
60.319
60.000
0.00
0.00
0.00
1.73
1133
1221
1.617947
AAGAGCGAGCGAAGGGGATT
61.618
55.000
0.00
0.00
0.00
3.01
1134
1222
2.022240
GAAGAGCGAGCGAAGGGGAT
62.022
60.000
0.00
0.00
0.00
3.85
1136
1224
2.202810
GAAGAGCGAGCGAAGGGG
60.203
66.667
0.00
0.00
0.00
4.79
1139
1227
1.205485
CGGATGAAGAGCGAGCGAAG
61.205
60.000
0.00
0.00
0.00
3.79
1140
1228
1.226688
CGGATGAAGAGCGAGCGAA
60.227
57.895
0.00
0.00
0.00
4.70
1143
1231
1.148759
GGAACGGATGAAGAGCGAGC
61.149
60.000
0.00
0.00
0.00
5.03
1145
1233
1.515954
GGGAACGGATGAAGAGCGA
59.484
57.895
0.00
0.00
0.00
4.93
1147
1235
0.179070
GAGGGGAACGGATGAAGAGC
60.179
60.000
0.00
0.00
0.00
4.09
1148
1236
0.466124
GGAGGGGAACGGATGAAGAG
59.534
60.000
0.00
0.00
0.00
2.85
1151
1239
0.042731
AGAGGAGGGGAACGGATGAA
59.957
55.000
0.00
0.00
0.00
2.57
1152
1240
0.397254
GAGAGGAGGGGAACGGATGA
60.397
60.000
0.00
0.00
0.00
2.92
1154
1242
1.075151
GGAGAGGAGGGGAACGGAT
60.075
63.158
0.00
0.00
0.00
4.18
1156
1244
3.148279
CGGAGAGGAGGGGAACGG
61.148
72.222
0.00
0.00
0.00
4.44
1158
1246
3.839432
CGCGGAGAGGAGGGGAAC
61.839
72.222
0.00
0.00
0.00
3.62
1278
1379
4.293626
CTAATTTCCGCGCCGCCG
62.294
66.667
2.28
0.00
37.57
6.46
1279
1380
3.949047
CCTAATTTCCGCGCCGCC
61.949
66.667
2.28
0.00
0.00
6.13
1280
1381
3.164390
GACCTAATTTCCGCGCCGC
62.164
63.158
0.00
0.00
0.00
6.53
1281
1382
2.867091
CGACCTAATTTCCGCGCCG
61.867
63.158
0.00
0.00
0.00
6.46
1323
1424
0.305313
GCAAGCAAACGAACCGTGTA
59.695
50.000
0.00
0.00
39.99
2.90
1325
1426
1.657181
GGCAAGCAAACGAACCGTG
60.657
57.895
0.00
0.00
39.99
4.94
1327
1428
2.050442
GGGCAAGCAAACGAACCG
60.050
61.111
0.00
0.00
0.00
4.44
1328
1429
2.050442
CGGGCAAGCAAACGAACC
60.050
61.111
0.00
0.00
0.00
3.62
1329
1430
2.729491
GCGGGCAAGCAAACGAAC
60.729
61.111
7.11
0.00
37.05
3.95
1330
1431
4.320928
CGCGGGCAAGCAAACGAA
62.321
61.111
0.00
0.00
36.85
3.85
1366
1467
4.360405
AAAATGGGGAGCCGCCGT
62.360
61.111
0.81
1.39
39.47
5.68
1376
1477
1.567357
AAACGATGGGGGAAAATGGG
58.433
50.000
0.00
0.00
0.00
4.00
1378
1479
2.741517
GCAAAAACGATGGGGGAAAATG
59.258
45.455
0.00
0.00
0.00
2.32
1380
1481
2.043227
AGCAAAAACGATGGGGGAAAA
58.957
42.857
0.00
0.00
0.00
2.29
1383
1484
0.965439
CAAGCAAAAACGATGGGGGA
59.035
50.000
0.00
0.00
0.00
4.81
1404
1505
2.360600
CCAAATCGACCGGGGCAA
60.361
61.111
6.32
0.00
0.00
4.52
1489
1600
1.595993
TTCGAGGAGGGAACGAGCAG
61.596
60.000
0.00
0.00
37.36
4.24
1492
1603
2.271800
CAATTTCGAGGAGGGAACGAG
58.728
52.381
0.00
0.00
37.36
4.18
1493
1604
1.621814
ACAATTTCGAGGAGGGAACGA
59.378
47.619
0.00
0.00
0.00
3.85
1494
1605
2.094762
ACAATTTCGAGGAGGGAACG
57.905
50.000
0.00
0.00
0.00
3.95
1495
1606
3.568430
ACAAACAATTTCGAGGAGGGAAC
59.432
43.478
0.00
0.00
0.00
3.62
1511
1622
7.971168
CGGATAAAATAGTGGCATTAACAAACA
59.029
33.333
0.00
0.00
0.00
2.83
1656
1770
2.842457
TGTTATAGGAGCAGCAGCATG
58.158
47.619
3.17
0.00
45.49
4.06
1658
1772
4.323028
GGATATGTTATAGGAGCAGCAGCA
60.323
45.833
3.17
0.00
45.49
4.41
1660
1774
5.186603
TCAGGATATGTTATAGGAGCAGCAG
59.813
44.000
0.00
0.00
0.00
4.24
1706
1820
2.093983
GAGTAGTGCAAACGCGCG
59.906
61.111
30.96
30.96
44.77
6.86
1768
1887
2.852431
GAACGAGGACGCCGTCAGAG
62.852
65.000
20.08
11.15
43.96
3.35
1816
1935
9.678941
CCAGTAAACTTGTTTCCTTTTTCTATC
57.321
33.333
1.72
0.00
0.00
2.08
1841
1961
2.663188
CCTTGGCGCTAGCGATCC
60.663
66.667
39.52
30.15
46.35
3.36
1871
1991
2.817844
GGTATGTTGTTCACCAGTTCCC
59.182
50.000
0.00
0.00
32.32
3.97
2053
2186
8.389586
CGCAGGAAACCAAGTAAATATTTTAC
57.610
34.615
5.91
3.30
0.00
2.01
2108
2241
9.203421
AGCAAATAACATAGCTTTTTAACCAAC
57.797
29.630
0.00
0.00
32.52
3.77
2123
2256
3.573538
TGGTGAGCACAAGCAAATAACAT
59.426
39.130
2.75
0.00
45.49
2.71
2414
2549
5.526506
AGCCTGATCAAATAAAGCAATCC
57.473
39.130
0.00
0.00
0.00
3.01
2444
2579
4.864633
TGTTACGTCACGTGGTAATAACA
58.135
39.130
14.62
19.76
41.39
2.41
2758
2893
7.287061
TGATCTTCAATAATTCCGGGTTGTAT
58.713
34.615
0.00
0.00
0.00
2.29
2765
2900
6.569226
GCTTCCATGATCTTCAATAATTCCGG
60.569
42.308
0.00
0.00
0.00
5.14
3163
3298
1.529010
CACAAGGCCACCTGCAGAA
60.529
57.895
17.39
0.00
43.89
3.02
3205
3340
6.067217
AGAGGGTTGCATATGTAGAAGTTT
57.933
37.500
4.29
0.00
0.00
2.66
3256
3391
1.222936
CCATGCCTGGACTGACCTC
59.777
63.158
0.97
0.00
46.37
3.85
3289
3424
1.002069
TTCCATTCAGCACCATCCCT
58.998
50.000
0.00
0.00
0.00
4.20
3367
3502
4.737279
CACATATTCTGCACTGAGTCGTAG
59.263
45.833
0.00
0.00
0.00
3.51
3405
3540
1.135575
GCTTGATGCTTGGAGGAAACG
60.136
52.381
0.00
0.00
38.95
3.60
3619
3754
1.226916
TGCGTTTTTGCACAGCAGG
60.227
52.632
0.00
0.00
40.61
4.85
3853
3988
2.413142
GCAAGGGAGCATGCAGTCC
61.413
63.158
21.98
18.56
42.12
3.85
4091
4226
5.580691
TCGCAGATGATAAAACCAACAGTAG
59.419
40.000
0.00
0.00
0.00
2.57
4098
4233
6.150976
ACAAATTCTCGCAGATGATAAAACCA
59.849
34.615
0.00
0.00
33.89
3.67
4111
4246
0.865111
CACCGACACAAATTCTCGCA
59.135
50.000
0.00
0.00
0.00
5.10
4164
4299
2.159517
GCCTTTTGATCGCAGTAACCTG
60.160
50.000
0.00
0.00
41.91
4.00
4213
4348
7.091443
ACAACAACGGAACAAATAAAAGTTGA
58.909
30.769
11.61
0.00
39.60
3.18
4214
4349
7.062371
TGACAACAACGGAACAAATAAAAGTTG
59.938
33.333
0.00
0.00
41.97
3.16
4275
4412
0.179936
GCTCAGTTCTGGGGAGATGG
59.820
60.000
1.77
0.00
0.00
3.51
4283
4420
6.909550
ATTATAGAGTAGGCTCAGTTCTGG
57.090
41.667
0.00
0.00
44.00
3.86
4373
4540
6.589907
CCATATTACTGTATCAGCGCATTACA
59.410
38.462
11.47
13.10
34.37
2.41
4383
4550
4.410555
TGGCACCACCATATTACTGTATCA
59.589
41.667
0.00
0.00
46.36
2.15
4405
4572
2.530460
TCCCCCTTCACCATGAATTG
57.470
50.000
0.00
0.00
35.59
2.32
4480
4647
6.858478
GGAAACTTTTCAAGTATTCAGCAGTC
59.142
38.462
4.18
0.00
41.91
3.51
4481
4648
6.513393
CGGAAACTTTTCAAGTATTCAGCAGT
60.513
38.462
4.18
0.00
41.91
4.40
4557
4724
2.031682
CCTGTCTCGGCAGTTGAAAAAG
60.032
50.000
0.00
0.00
34.84
2.27
4592
4759
2.487986
GGAGGGCTTGAGATATGGTTGG
60.488
54.545
0.00
0.00
0.00
3.77
4632
4817
3.860378
GCCTTGCAATTTCAAATGGACGA
60.860
43.478
0.00
0.00
0.00
4.20
4634
4819
3.401182
TGCCTTGCAATTTCAAATGGAC
58.599
40.909
0.00
0.00
34.76
4.02
4667
4852
0.103208
AGCTCCTTATCTTCGTGGCG
59.897
55.000
0.00
0.00
0.00
5.69
4673
4858
8.258708
TCTTGGTTTACTTAGCTCCTTATCTTC
58.741
37.037
0.00
0.00
0.00
2.87
4685
4870
8.037166
ACGGTACCTTTATCTTGGTTTACTTAG
58.963
37.037
10.90
0.00
37.74
2.18
4687
4872
6.652062
CACGGTACCTTTATCTTGGTTTACTT
59.348
38.462
10.90
0.00
37.74
2.24
4738
4969
8.701895
ACTTCCTCCATGATATAACTTTCGTAA
58.298
33.333
0.00
0.00
0.00
3.18
4741
4972
7.815068
CCTACTTCCTCCATGATATAACTTTCG
59.185
40.741
0.00
0.00
0.00
3.46
4798
5029
5.697178
TCGTGTCGAAGGTGAAATAATTTCA
59.303
36.000
0.00
0.00
39.02
2.69
4803
5034
3.737266
GTGTCGTGTCGAAGGTGAAATAA
59.263
43.478
0.00
0.00
37.72
1.40
4815
5046
1.990563
GTTATCAAGGGTGTCGTGTCG
59.009
52.381
0.00
0.00
0.00
4.35
4903
5134
4.479619
GTGTTTCTGCAATGATCCACTTC
58.520
43.478
0.00
0.00
0.00
3.01
4915
5146
3.334691
GCATGTACTAGGTGTTTCTGCA
58.665
45.455
0.00
0.00
0.00
4.41
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.