Multiple sequence alignment - TraesCS3B01G470200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G470200 chr3B 100.000 2541 0 0 1 2541 718286054 718288594 0.000000e+00 4693.0
1 TraesCS3B01G470200 chr3B 99.187 246 1 1 2296 2541 183472203 183471959 2.320000e-120 442.0
2 TraesCS3B01G470200 chr3B 77.778 153 27 7 1643 1794 717695808 717695954 1.250000e-13 87.9
3 TraesCS3B01G470200 chr3A 89.631 2305 140 40 1 2247 678497010 678499273 0.000000e+00 2841.0
4 TraesCS3B01G470200 chr3D 91.363 1563 79 25 763 2295 542379553 542381089 0.000000e+00 2087.0
5 TraesCS3B01G470200 chr3D 87.121 792 69 18 8 769 542317767 542318555 0.000000e+00 867.0
6 TraesCS3B01G470200 chr7B 96.341 246 9 0 2296 2541 658456937 658457182 3.040000e-109 405.0
7 TraesCS3B01G470200 chr4B 90.272 257 13 1 2297 2541 80977395 80977651 2.440000e-85 326.0
8 TraesCS3B01G470200 chr7D 87.938 257 19 1 2297 2541 538906694 538906438 2.470000e-75 292.0
9 TraesCS3B01G470200 chr2D 87.500 248 19 1 2306 2541 329159481 329159234 2.490000e-70 276.0
10 TraesCS3B01G470200 chr2D 84.496 129 8 1 2425 2541 329159481 329159609 1.600000e-22 117.0
11 TraesCS3B01G470200 chr5D 91.803 183 15 0 2297 2479 110872251 110872069 3.240000e-64 255.0
12 TraesCS3B01G470200 chr4D 86.667 195 11 11 2360 2541 404043441 404043249 4.290000e-48 202.0
13 TraesCS3B01G470200 chr1D 87.943 141 5 1 2413 2541 159871958 159871818 3.380000e-34 156.0
14 TraesCS3B01G470200 chr2B 78.689 244 27 11 2322 2541 391480199 391479957 3.410000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G470200 chr3B 718286054 718288594 2540 False 4693 4693 100.000 1 2541 1 chr3B.!!$F2 2540
1 TraesCS3B01G470200 chr3A 678497010 678499273 2263 False 2841 2841 89.631 1 2247 1 chr3A.!!$F1 2246
2 TraesCS3B01G470200 chr3D 542379553 542381089 1536 False 2087 2087 91.363 763 2295 1 chr3D.!!$F2 1532
3 TraesCS3B01G470200 chr3D 542317767 542318555 788 False 867 867 87.121 8 769 1 chr3D.!!$F1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 416 0.310854 GTTGGCAGAAACTGGAACCG 59.689 55.0 0.0 0.0 31.21 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2304 2366 0.03563 GCTCAGTCAAGGCACTGGAT 60.036 55.0 3.91 0.0 42.38 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 4.837896 CGCTTCTTTCTCTTTCCCTTTT 57.162 40.909 0.00 0.00 0.00 2.27
62 64 2.431057 GGATGACCTCTTGTATCCACGT 59.569 50.000 0.00 0.00 39.09 4.49
77 79 1.594293 ACGTGTCGTGCCCTCTTTG 60.594 57.895 0.00 0.00 39.18 2.77
121 133 0.464373 GGAGGATGCTGCGAATCCAA 60.464 55.000 18.06 0.00 45.24 3.53
143 155 1.658994 GGTTCAACACCGACAAGTGA 58.341 50.000 0.00 0.00 40.34 3.41
154 166 1.590238 CGACAAGTGATTCGATGCCTC 59.410 52.381 0.00 0.00 37.43 4.70
202 214 2.158871 AGGACAAACTAAGTTGCGACCA 60.159 45.455 0.00 0.00 31.29 4.02
294 309 1.379044 GGGGCTGTATGCTGCAACT 60.379 57.895 6.36 0.00 42.39 3.16
335 351 1.076485 GGCTGGGAGGATGTTGCAT 60.076 57.895 0.00 0.00 0.00 3.96
336 352 1.105759 GGCTGGGAGGATGTTGCATC 61.106 60.000 0.00 0.80 0.00 3.91
388 404 4.263209 TTGCAACCGCGTTGGCAG 62.263 61.111 5.66 0.00 42.99 4.85
400 416 0.310854 GTTGGCAGAAACTGGAACCG 59.689 55.000 0.00 0.00 31.21 4.44
402 418 1.896660 GGCAGAAACTGGAACCGCA 60.897 57.895 0.00 0.00 31.21 5.69
430 454 2.879462 GCTGGAACGCGACTACCG 60.879 66.667 15.93 7.87 42.21 4.02
442 466 1.735386 GACTACCGGAAGCTTTTCCC 58.265 55.000 9.46 0.00 37.84 3.97
443 467 1.002773 GACTACCGGAAGCTTTTCCCA 59.997 52.381 9.46 0.00 37.84 4.37
450 474 2.460669 GGAAGCTTTTCCCATGGTGAT 58.539 47.619 11.73 0.00 35.06 3.06
460 484 1.521457 CATGGTGATCACGACCCGG 60.521 63.158 19.33 0.00 31.84 5.73
478 502 3.803082 CGGGATGCTGCAACCGTG 61.803 66.667 29.37 18.71 41.34 4.94
490 514 1.722011 CAACCGTGGTGTCTGGATAC 58.278 55.000 0.00 0.00 0.00 2.24
524 548 1.447140 CCGTTGCGGCAACTAGCTA 60.447 57.895 34.78 4.22 41.62 3.32
565 589 1.497278 CTGCACCGACAACGAATGG 59.503 57.895 0.00 0.00 42.66 3.16
590 614 2.689785 CGCAAGGCCGATTTGCTGA 61.690 57.895 21.76 0.00 46.62 4.26
593 617 1.386533 CAAGGCCGATTTGCTGAGAT 58.613 50.000 0.00 0.00 0.00 2.75
627 651 4.966787 TGCAAAGGGGCGGACCAC 62.967 66.667 0.36 0.00 42.91 4.16
628 652 4.966787 GCAAAGGGGCGGACCACA 62.967 66.667 0.36 0.00 44.59 4.17
630 654 3.494254 AAAGGGGCGGACCACACA 61.494 61.111 0.36 0.00 44.59 3.72
635 659 2.672996 GGCGGACCACACAAGCAT 60.673 61.111 0.00 0.00 35.26 3.79
697 723 3.882670 AAGGGGGTGGTGGGAGGA 61.883 66.667 0.00 0.00 0.00 3.71
702 728 3.239253 GGTGGTGGGAGGACGTGT 61.239 66.667 0.00 0.00 0.00 4.49
724 750 4.794439 CGACGAGCCGACATGCCA 62.794 66.667 0.00 0.00 0.00 4.92
725 751 2.202932 GACGAGCCGACATGCCAT 60.203 61.111 0.00 0.00 0.00 4.40
727 753 3.274586 CGAGCCGACATGCCATGG 61.275 66.667 7.63 7.63 33.60 3.66
728 754 2.190313 GAGCCGACATGCCATGGA 59.810 61.111 18.40 0.31 33.60 3.41
753 782 1.450669 GAGCGAGGAGAGAGACGGT 60.451 63.158 0.00 0.00 39.07 4.83
758 787 1.757682 GAGGAGAGAGACGGTGATGT 58.242 55.000 0.00 0.00 0.00 3.06
766 795 2.158957 AGAGACGGTGATGTGTGTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
783 812 1.152546 GTGTGTGGGGGAAAAGGCT 60.153 57.895 0.00 0.00 0.00 4.58
835 864 6.939730 TCCAAATCAAACACATCTTACAGCTA 59.060 34.615 0.00 0.00 0.00 3.32
841 870 3.714144 ACACATCTTACAGCTAGGAGGT 58.286 45.455 0.00 0.00 0.00 3.85
854 883 2.114411 GAGGTGACCGGCCCAAAA 59.886 61.111 0.00 0.00 0.00 2.44
925 957 4.702081 AGACGTGCGCTGTCCGAC 62.702 66.667 23.55 14.06 40.02 4.79
950 983 1.179152 TTTCCGTGGATAGAGCGACA 58.821 50.000 0.00 0.00 0.00 4.35
951 984 0.738975 TTCCGTGGATAGAGCGACAG 59.261 55.000 0.00 0.00 0.00 3.51
1295 1330 3.897122 TCCACCGGCAAGGGCTTT 61.897 61.111 0.00 0.00 46.96 3.51
1298 1333 2.597510 ACCGGCAAGGGCTTTGTC 60.598 61.111 11.21 7.60 46.96 3.18
1323 1362 2.502492 CGCTCCCATGGATCGACCT 61.502 63.158 15.22 0.00 42.97 3.85
1326 1365 0.390860 CTCCCATGGATCGACCTGTC 59.609 60.000 15.22 0.00 39.86 3.51
1328 1367 1.050988 CCCATGGATCGACCTGTCCT 61.051 60.000 15.22 0.00 39.86 3.85
1330 1369 0.826715 CATGGATCGACCTGTCCTGT 59.173 55.000 4.50 0.00 39.86 4.00
1331 1370 2.031870 CATGGATCGACCTGTCCTGTA 58.968 52.381 4.50 0.00 39.86 2.74
1333 1372 1.822990 TGGATCGACCTGTCCTGTAAC 59.177 52.381 4.50 0.00 39.86 2.50
1334 1373 1.202268 GGATCGACCTGTCCTGTAACG 60.202 57.143 0.00 0.00 35.41 3.18
1335 1374 0.172803 ATCGACCTGTCCTGTAACGC 59.827 55.000 0.00 0.00 0.00 4.84
1336 1375 1.445582 CGACCTGTCCTGTAACGCC 60.446 63.158 0.00 0.00 0.00 5.68
1337 1376 1.874345 CGACCTGTCCTGTAACGCCT 61.874 60.000 0.00 0.00 0.00 5.52
1338 1377 0.108756 GACCTGTCCTGTAACGCCTC 60.109 60.000 0.00 0.00 0.00 4.70
1348 1387 2.340328 TAACGCCTCGCTCTGCTGA 61.340 57.895 0.00 0.00 0.00 4.26
1369 1408 1.982223 GCTAGATGCTCGCTATTGACG 59.018 52.381 0.00 0.00 38.95 4.35
1377 1416 2.580470 CGCTATTGACGGCGCTCTG 61.580 63.158 6.90 0.00 44.64 3.35
1378 1417 2.875786 GCTATTGACGGCGCTCTGC 61.876 63.158 6.90 0.02 45.38 4.26
1402 1441 2.602217 GCTTCGACGTGTTTTGCAGAAT 60.602 45.455 0.00 0.00 0.00 2.40
1489 1528 1.135333 GTCCTCTTCATCGTCAGGTCC 59.865 57.143 0.00 0.00 0.00 4.46
1498 1537 4.803426 GTCAGGTCCGGAGCGCAG 62.803 72.222 26.86 20.19 0.00 5.18
1534 1573 5.220662 CCATCGCACGAAATAATTGAAGACT 60.221 40.000 0.00 0.00 0.00 3.24
1569 1610 2.457366 ACAAAGTAAGCGGAGACCTG 57.543 50.000 0.00 0.00 0.00 4.00
1641 1682 9.732130 AAGATTCCTGGAGATTATAATTAGCAC 57.268 33.333 0.00 0.00 0.00 4.40
1704 1745 4.352600 GCTGTGAGCATATTCATATGGC 57.647 45.455 2.13 0.00 41.89 4.40
1766 1824 5.360714 ACCATTTTGTGTGTGAATTCAGACT 59.639 36.000 29.38 11.19 40.39 3.24
1784 1842 3.072184 AGACTGATGCTCAAAGTTCAGGT 59.928 43.478 4.06 0.00 39.89 4.00
1797 1855 2.152016 GTTCAGGTTCTAACACCCTGC 58.848 52.381 0.00 0.00 44.41 4.85
1802 1860 4.288626 TCAGGTTCTAACACCCTGCTAATT 59.711 41.667 0.00 0.00 44.41 1.40
1807 1865 6.826741 GGTTCTAACACCCTGCTAATTATTCA 59.173 38.462 0.00 0.00 0.00 2.57
1812 1870 9.561069 CTAACACCCTGCTAATTATTCAGTTAT 57.439 33.333 11.57 0.00 0.00 1.89
1813 1871 7.807977 ACACCCTGCTAATTATTCAGTTATG 57.192 36.000 11.57 9.46 0.00 1.90
1814 1872 6.772716 ACACCCTGCTAATTATTCAGTTATGG 59.227 38.462 11.57 8.86 0.00 2.74
1815 1873 6.998074 CACCCTGCTAATTATTCAGTTATGGA 59.002 38.462 11.57 0.00 0.00 3.41
1816 1874 7.173907 CACCCTGCTAATTATTCAGTTATGGAG 59.826 40.741 11.57 4.07 0.00 3.86
1841 1899 8.638873 AGTATGAATGTAATGTCCGTTCAGATA 58.361 33.333 0.00 0.00 40.19 1.98
1855 1913 7.435488 GTCCGTTCAGATATGTATATGCCATAC 59.565 40.741 0.00 0.00 0.00 2.39
1866 1924 2.664402 ATGCCATACATGAAGTCCCC 57.336 50.000 0.00 0.00 37.70 4.81
1916 1976 3.837213 AGACATGCAAATGGACGAAAG 57.163 42.857 0.00 0.00 0.00 2.62
1936 1996 6.861572 CGAAAGATGTGTCTTGTGTAGAGTTA 59.138 38.462 0.00 0.00 43.80 2.24
1941 2001 6.156748 TGTGTCTTGTGTAGAGTTATGTGT 57.843 37.500 0.00 0.00 32.23 3.72
1992 2052 4.951715 TCACCTGAATTCCTGATGGATTTG 59.048 41.667 2.27 0.00 42.81 2.32
2065 2125 6.547510 GGACATGAATACCTTTGATTTAGCCT 59.452 38.462 0.00 0.00 0.00 4.58
2072 2132 9.736023 GAATACCTTTGATTTAGCCTTGTATTG 57.264 33.333 0.00 0.00 0.00 1.90
2099 2159 6.519679 TGTACTTATGTGGTAGGTACACTG 57.480 41.667 6.20 0.00 45.46 3.66
2102 2162 5.331069 ACTTATGTGGTAGGTACACTGACT 58.669 41.667 0.00 0.00 39.52 3.41
2180 2241 1.568612 AAGCGTGACGGCATGAGTTG 61.569 55.000 16.58 0.00 32.63 3.16
2205 2266 0.670239 GTTTTGGGCCTGGCGATTTG 60.670 55.000 13.40 0.00 0.00 2.32
2252 2314 0.183014 AGAATCTGCCATGGGAGCTG 59.817 55.000 27.43 10.35 33.42 4.24
2260 2322 1.755179 CCATGGGAGCTGTTACTTGG 58.245 55.000 2.85 0.00 0.00 3.61
2286 2348 4.420522 AGAACCCACACAAAAATTGCAT 57.579 36.364 0.00 0.00 0.00 3.96
2287 2349 4.128643 AGAACCCACACAAAAATTGCATG 58.871 39.130 0.00 0.00 0.00 4.06
2288 2350 3.557228 ACCCACACAAAAATTGCATGT 57.443 38.095 0.00 0.00 0.00 3.21
2289 2351 3.465871 ACCCACACAAAAATTGCATGTC 58.534 40.909 0.00 0.00 0.00 3.06
2290 2352 2.807392 CCCACACAAAAATTGCATGTCC 59.193 45.455 0.00 0.00 0.00 4.02
2291 2353 3.464907 CCACACAAAAATTGCATGTCCA 58.535 40.909 0.00 0.00 0.00 4.02
2292 2354 3.495377 CCACACAAAAATTGCATGTCCAG 59.505 43.478 0.00 0.00 0.00 3.86
2293 2355 3.059461 CACACAAAAATTGCATGTCCAGC 60.059 43.478 0.00 0.00 0.00 4.85
2294 2356 3.132160 CACAAAAATTGCATGTCCAGCA 58.868 40.909 0.00 0.00 40.85 4.41
2295 2357 3.059461 CACAAAAATTGCATGTCCAGCAC 60.059 43.478 0.00 0.00 42.54 4.40
2296 2358 2.068837 AAAATTGCATGTCCAGCACG 57.931 45.000 0.00 0.00 42.54 5.34
2297 2359 0.244450 AAATTGCATGTCCAGCACGG 59.756 50.000 0.00 0.00 42.54 4.94
2298 2360 0.608856 AATTGCATGTCCAGCACGGA 60.609 50.000 0.00 0.00 42.54 4.69
2317 2379 3.272574 GATTGAGATCCAGTGCCTTGA 57.727 47.619 0.00 0.00 0.00 3.02
2318 2380 2.479566 TTGAGATCCAGTGCCTTGAC 57.520 50.000 0.00 0.00 0.00 3.18
2319 2381 1.649321 TGAGATCCAGTGCCTTGACT 58.351 50.000 0.00 0.00 0.00 3.41
2320 2382 1.277273 TGAGATCCAGTGCCTTGACTG 59.723 52.381 0.00 0.00 42.68 3.51
2321 2383 1.552337 GAGATCCAGTGCCTTGACTGA 59.448 52.381 3.59 0.00 45.39 3.41
2322 2384 1.554160 AGATCCAGTGCCTTGACTGAG 59.446 52.381 3.59 0.00 45.39 3.35
2323 2385 0.035630 ATCCAGTGCCTTGACTGAGC 60.036 55.000 3.59 0.00 45.39 4.26
2324 2386 1.673665 CCAGTGCCTTGACTGAGCC 60.674 63.158 3.59 0.00 45.39 4.70
2325 2387 1.071987 CAGTGCCTTGACTGAGCCA 59.928 57.895 0.00 0.00 45.39 4.75
2326 2388 0.535780 CAGTGCCTTGACTGAGCCAA 60.536 55.000 0.00 0.00 45.39 4.52
2327 2389 0.250640 AGTGCCTTGACTGAGCCAAG 60.251 55.000 1.17 1.17 40.37 3.61
2330 2392 4.806936 CTTGACTGAGCCAAGGCA 57.193 55.556 14.40 0.00 44.88 4.75
2331 2393 2.251600 CTTGACTGAGCCAAGGCAC 58.748 57.895 14.40 7.79 44.88 5.01
2332 2394 1.228245 TTGACTGAGCCAAGGCACC 60.228 57.895 14.40 5.25 44.88 5.01
2333 2395 1.993701 TTGACTGAGCCAAGGCACCA 61.994 55.000 14.40 9.64 44.88 4.17
2334 2396 1.673665 GACTGAGCCAAGGCACCAG 60.674 63.158 23.05 23.05 44.00 4.00
2335 2397 3.060615 CTGAGCCAAGGCACCAGC 61.061 66.667 14.40 0.00 44.88 4.85
2336 2398 3.855503 CTGAGCCAAGGCACCAGCA 62.856 63.158 14.40 2.61 44.61 4.41
2337 2399 2.598394 GAGCCAAGGCACCAGCAA 60.598 61.111 14.40 0.00 44.61 3.91
2338 2400 2.123338 AGCCAAGGCACCAGCAAA 60.123 55.556 14.40 0.00 44.61 3.68
2339 2401 1.534717 AGCCAAGGCACCAGCAAAT 60.535 52.632 14.40 0.00 44.61 2.32
2340 2402 0.251742 AGCCAAGGCACCAGCAAATA 60.252 50.000 14.40 0.00 44.61 1.40
2341 2403 0.174162 GCCAAGGCACCAGCAAATAG 59.826 55.000 6.14 0.00 44.61 1.73
2342 2404 1.549203 CCAAGGCACCAGCAAATAGT 58.451 50.000 0.00 0.00 44.61 2.12
2343 2405 1.203052 CCAAGGCACCAGCAAATAGTG 59.797 52.381 0.00 0.00 44.61 2.74
2344 2406 1.888512 CAAGGCACCAGCAAATAGTGT 59.111 47.619 0.00 0.00 44.61 3.55
2345 2407 1.826385 AGGCACCAGCAAATAGTGTC 58.174 50.000 0.00 0.00 44.61 3.67
2346 2408 0.447801 GGCACCAGCAAATAGTGTCG 59.552 55.000 0.00 0.00 44.61 4.35
2347 2409 1.156736 GCACCAGCAAATAGTGTCGT 58.843 50.000 0.00 0.00 41.58 4.34
2348 2410 1.135972 GCACCAGCAAATAGTGTCGTG 60.136 52.381 0.00 0.00 41.58 4.35
2349 2411 1.135972 CACCAGCAAATAGTGTCGTGC 60.136 52.381 0.00 0.00 37.26 5.34
2350 2412 0.447801 CCAGCAAATAGTGTCGTGCC 59.552 55.000 0.00 0.00 37.73 5.01
2351 2413 1.442769 CAGCAAATAGTGTCGTGCCT 58.557 50.000 0.00 0.00 37.73 4.75
2352 2414 1.806542 CAGCAAATAGTGTCGTGCCTT 59.193 47.619 0.00 0.00 37.73 4.35
2353 2415 1.806542 AGCAAATAGTGTCGTGCCTTG 59.193 47.619 0.00 0.00 37.73 3.61
2354 2416 1.729149 GCAAATAGTGTCGTGCCTTGC 60.729 52.381 0.00 0.00 0.00 4.01
2355 2417 1.135689 CAAATAGTGTCGTGCCTTGCC 60.136 52.381 0.00 0.00 0.00 4.52
2356 2418 0.676782 AATAGTGTCGTGCCTTGCCC 60.677 55.000 0.00 0.00 0.00 5.36
2357 2419 2.536997 ATAGTGTCGTGCCTTGCCCC 62.537 60.000 0.00 0.00 0.00 5.80
2372 2434 4.637771 CCCCCATTTCTGTCCGTC 57.362 61.111 0.00 0.00 0.00 4.79
2373 2435 1.449601 CCCCCATTTCTGTCCGTCG 60.450 63.158 0.00 0.00 0.00 5.12
2374 2436 1.449601 CCCCATTTCTGTCCGTCGG 60.450 63.158 4.39 4.39 0.00 4.79
2375 2437 1.594833 CCCATTTCTGTCCGTCGGA 59.405 57.895 10.71 10.71 0.00 4.55
2376 2438 0.178068 CCCATTTCTGTCCGTCGGAT 59.822 55.000 18.75 0.00 32.73 4.18
2377 2439 1.571919 CCATTTCTGTCCGTCGGATC 58.428 55.000 18.75 11.69 32.73 3.36
2378 2440 1.134818 CCATTTCTGTCCGTCGGATCA 60.135 52.381 18.75 15.54 32.73 2.92
2379 2441 2.616960 CATTTCTGTCCGTCGGATCAA 58.383 47.619 18.75 7.78 32.73 2.57
2380 2442 2.363788 TTTCTGTCCGTCGGATCAAG 57.636 50.000 18.75 15.15 32.73 3.02
2381 2443 1.541379 TTCTGTCCGTCGGATCAAGA 58.459 50.000 18.75 17.14 32.73 3.02
2382 2444 1.541379 TCTGTCCGTCGGATCAAGAA 58.459 50.000 18.75 3.76 32.73 2.52
2383 2445 2.100197 TCTGTCCGTCGGATCAAGAAT 58.900 47.619 18.75 0.00 32.73 2.40
2384 2446 2.099263 TCTGTCCGTCGGATCAAGAATC 59.901 50.000 18.75 2.06 32.73 2.52
2385 2447 1.202256 TGTCCGTCGGATCAAGAATCG 60.202 52.381 18.75 0.00 34.99 3.34
2386 2448 1.065102 GTCCGTCGGATCAAGAATCGA 59.935 52.381 18.75 0.00 34.99 3.59
2387 2449 1.954382 TCCGTCGGATCAAGAATCGAT 59.046 47.619 10.71 0.00 34.99 3.59
2388 2450 2.054363 CCGTCGGATCAAGAATCGATG 58.946 52.381 4.91 0.00 34.99 3.84
2389 2451 2.054363 CGTCGGATCAAGAATCGATGG 58.946 52.381 0.00 0.00 34.99 3.51
2390 2452 2.543861 CGTCGGATCAAGAATCGATGGT 60.544 50.000 0.00 0.00 34.99 3.55
2391 2453 3.053455 GTCGGATCAAGAATCGATGGTC 58.947 50.000 0.00 0.00 34.99 4.02
2392 2454 2.054363 CGGATCAAGAATCGATGGTCG 58.946 52.381 0.00 0.00 42.10 4.79
2393 2455 2.408050 GGATCAAGAATCGATGGTCGG 58.592 52.381 0.00 0.00 40.88 4.79
2394 2456 2.035961 GGATCAAGAATCGATGGTCGGA 59.964 50.000 0.00 0.00 40.88 4.55
2395 2457 3.306364 GGATCAAGAATCGATGGTCGGAT 60.306 47.826 0.00 3.07 40.88 4.18
2396 2458 3.097877 TCAAGAATCGATGGTCGGATG 57.902 47.619 0.00 0.00 40.88 3.51
2397 2459 2.693074 TCAAGAATCGATGGTCGGATGA 59.307 45.455 0.00 0.00 40.88 2.92
2398 2460 3.132111 TCAAGAATCGATGGTCGGATGAA 59.868 43.478 0.00 0.00 40.88 2.57
2399 2461 3.099267 AGAATCGATGGTCGGATGAAC 57.901 47.619 0.00 0.00 40.88 3.18
2406 2468 2.849294 TGGTCGGATGAACATGAACA 57.151 45.000 0.00 0.00 36.73 3.18
2407 2469 2.698803 TGGTCGGATGAACATGAACAG 58.301 47.619 0.00 0.00 36.73 3.16
2408 2470 2.009774 GGTCGGATGAACATGAACAGG 58.990 52.381 0.00 0.00 0.00 4.00
2409 2471 2.009774 GTCGGATGAACATGAACAGGG 58.990 52.381 0.00 0.00 0.00 4.45
2410 2472 1.065491 TCGGATGAACATGAACAGGGG 60.065 52.381 0.00 0.00 0.00 4.79
2411 2473 1.340017 CGGATGAACATGAACAGGGGT 60.340 52.381 0.00 0.00 0.00 4.95
2412 2474 2.093181 CGGATGAACATGAACAGGGGTA 60.093 50.000 0.00 0.00 0.00 3.69
2413 2475 3.279434 GGATGAACATGAACAGGGGTAC 58.721 50.000 0.00 0.00 0.00 3.34
2414 2476 3.054361 GGATGAACATGAACAGGGGTACT 60.054 47.826 0.00 0.00 0.00 2.73
2423 2485 3.300032 CAGGGGTACTGCTACAGGA 57.700 57.895 0.00 0.00 40.97 3.86
2424 2486 1.568504 CAGGGGTACTGCTACAGGAA 58.431 55.000 0.00 0.00 40.97 3.36
2425 2487 1.207329 CAGGGGTACTGCTACAGGAAC 59.793 57.143 0.00 0.00 40.97 3.62
2429 2491 3.180891 GGTACTGCTACAGGAACCATC 57.819 52.381 13.47 0.00 39.68 3.51
2430 2492 2.158943 GGTACTGCTACAGGAACCATCC 60.159 54.545 13.47 0.00 46.98 3.51
2442 2504 4.222124 GGAACCATCCACAGTACAATCT 57.778 45.455 0.00 0.00 45.79 2.40
2443 2505 3.941483 GGAACCATCCACAGTACAATCTG 59.059 47.826 0.00 0.00 45.79 2.90
2444 2506 2.991250 ACCATCCACAGTACAATCTGC 58.009 47.619 0.00 0.00 38.84 4.26
2445 2507 2.573462 ACCATCCACAGTACAATCTGCT 59.427 45.455 0.00 0.00 38.84 4.24
2446 2508 3.774766 ACCATCCACAGTACAATCTGCTA 59.225 43.478 0.00 0.00 38.84 3.49
2447 2509 4.122776 CCATCCACAGTACAATCTGCTAC 58.877 47.826 0.00 0.00 38.84 3.58
2448 2510 4.383010 CCATCCACAGTACAATCTGCTACA 60.383 45.833 0.00 0.00 38.84 2.74
2449 2511 4.456280 TCCACAGTACAATCTGCTACAG 57.544 45.455 0.00 0.00 38.84 2.74
2450 2512 4.086457 TCCACAGTACAATCTGCTACAGA 58.914 43.478 0.00 0.00 44.99 3.41
2451 2513 4.158579 TCCACAGTACAATCTGCTACAGAG 59.841 45.833 3.42 0.00 44.08 3.35
2452 2514 4.081972 CCACAGTACAATCTGCTACAGAGT 60.082 45.833 3.42 0.00 44.08 3.24
2453 2515 5.473931 CACAGTACAATCTGCTACAGAGTT 58.526 41.667 3.42 0.00 44.08 3.01
2454 2516 5.574830 CACAGTACAATCTGCTACAGAGTTC 59.425 44.000 3.42 0.00 44.08 3.01
2455 2517 5.478679 ACAGTACAATCTGCTACAGAGTTCT 59.521 40.000 3.42 0.00 44.08 3.01
2456 2518 6.015010 ACAGTACAATCTGCTACAGAGTTCTT 60.015 38.462 3.42 0.00 44.08 2.52
2457 2519 6.870965 CAGTACAATCTGCTACAGAGTTCTTT 59.129 38.462 3.42 0.00 44.08 2.52
2458 2520 7.062839 CAGTACAATCTGCTACAGAGTTCTTTC 59.937 40.741 3.42 0.00 44.08 2.62
2459 2521 5.858381 ACAATCTGCTACAGAGTTCTTTCA 58.142 37.500 3.42 0.00 44.08 2.69
2460 2522 5.698545 ACAATCTGCTACAGAGTTCTTTCAC 59.301 40.000 3.42 0.00 44.08 3.18
2461 2523 4.937201 TCTGCTACAGAGTTCTTTCACA 57.063 40.909 0.00 0.00 35.39 3.58
2462 2524 4.876125 TCTGCTACAGAGTTCTTTCACAG 58.124 43.478 0.00 0.00 35.39 3.66
2463 2525 4.584743 TCTGCTACAGAGTTCTTTCACAGA 59.415 41.667 0.00 0.00 35.39 3.41
2464 2526 5.244851 TCTGCTACAGAGTTCTTTCACAGAT 59.755 40.000 0.00 0.00 35.39 2.90
2465 2527 5.473931 TGCTACAGAGTTCTTTCACAGATC 58.526 41.667 0.00 0.00 0.00 2.75
2466 2528 4.560819 GCTACAGAGTTCTTTCACAGATCG 59.439 45.833 0.00 0.00 0.00 3.69
2467 2529 3.919216 ACAGAGTTCTTTCACAGATCGG 58.081 45.455 0.00 0.00 0.00 4.18
2468 2530 3.322254 ACAGAGTTCTTTCACAGATCGGT 59.678 43.478 0.00 0.00 0.00 4.69
2469 2531 3.677121 CAGAGTTCTTTCACAGATCGGTG 59.323 47.826 18.65 18.65 40.16 4.94
2470 2532 2.413453 GAGTTCTTTCACAGATCGGTGC 59.587 50.000 19.74 6.09 38.66 5.01
2471 2533 2.037772 AGTTCTTTCACAGATCGGTGCT 59.962 45.455 19.74 8.17 38.66 4.40
2472 2534 3.258372 AGTTCTTTCACAGATCGGTGCTA 59.742 43.478 19.74 8.51 38.66 3.49
2473 2535 3.232213 TCTTTCACAGATCGGTGCTAC 57.768 47.619 19.74 0.00 38.66 3.58
2474 2536 2.560981 TCTTTCACAGATCGGTGCTACA 59.439 45.455 19.74 1.26 38.66 2.74
2475 2537 2.654749 TTCACAGATCGGTGCTACAG 57.345 50.000 19.74 0.00 38.66 2.74
2476 2538 1.545841 TCACAGATCGGTGCTACAGT 58.454 50.000 19.74 0.00 38.66 3.55
2477 2539 2.718563 TCACAGATCGGTGCTACAGTA 58.281 47.619 19.74 0.00 38.66 2.74
2478 2540 2.422479 TCACAGATCGGTGCTACAGTAC 59.578 50.000 19.74 0.00 38.66 2.73
2479 2541 2.163613 CACAGATCGGTGCTACAGTACA 59.836 50.000 13.11 0.00 32.02 2.90
2480 2542 3.024547 ACAGATCGGTGCTACAGTACAT 58.975 45.455 0.00 0.00 32.02 2.29
2481 2543 4.036380 CACAGATCGGTGCTACAGTACATA 59.964 45.833 13.11 0.00 32.02 2.29
2482 2544 4.643334 ACAGATCGGTGCTACAGTACATAA 59.357 41.667 0.00 0.00 32.02 1.90
2483 2545 5.302059 ACAGATCGGTGCTACAGTACATAAT 59.698 40.000 0.00 0.00 32.02 1.28
2484 2546 5.859114 CAGATCGGTGCTACAGTACATAATC 59.141 44.000 0.00 0.43 32.02 1.75
2485 2547 5.770663 AGATCGGTGCTACAGTACATAATCT 59.229 40.000 0.00 2.40 32.02 2.40
2486 2548 6.940867 AGATCGGTGCTACAGTACATAATCTA 59.059 38.462 0.00 0.00 29.94 1.98
2487 2549 6.309712 TCGGTGCTACAGTACATAATCTAC 57.690 41.667 0.00 0.00 32.02 2.59
2488 2550 5.049886 TCGGTGCTACAGTACATAATCTACG 60.050 44.000 0.00 0.00 32.02 3.51
2489 2551 5.458891 GGTGCTACAGTACATAATCTACGG 58.541 45.833 0.00 0.00 32.02 4.02
2490 2552 5.009410 GGTGCTACAGTACATAATCTACGGT 59.991 44.000 0.00 0.00 32.02 4.83
2491 2553 5.913514 GTGCTACAGTACATAATCTACGGTG 59.086 44.000 0.00 0.00 0.00 4.94
2492 2554 4.916249 GCTACAGTACATAATCTACGGTGC 59.084 45.833 0.00 0.00 0.00 5.01
2493 2555 3.961182 ACAGTACATAATCTACGGTGCG 58.039 45.455 0.00 0.00 0.00 5.34
2494 2556 3.379372 ACAGTACATAATCTACGGTGCGT 59.621 43.478 0.00 0.00 44.35 5.24
2495 2557 3.729217 CAGTACATAATCTACGGTGCGTG 59.271 47.826 0.00 0.00 41.39 5.34
2496 2558 3.628942 AGTACATAATCTACGGTGCGTGA 59.371 43.478 0.00 0.00 41.39 4.35
2497 2559 3.728076 ACATAATCTACGGTGCGTGAT 57.272 42.857 0.00 0.00 41.39 3.06
2498 2560 3.639538 ACATAATCTACGGTGCGTGATC 58.360 45.455 0.00 0.00 41.39 2.92
2499 2561 3.318275 ACATAATCTACGGTGCGTGATCT 59.682 43.478 0.00 0.00 41.39 2.75
2500 2562 2.961526 AATCTACGGTGCGTGATCTT 57.038 45.000 0.00 0.00 41.39 2.40
2501 2563 2.209838 ATCTACGGTGCGTGATCTTG 57.790 50.000 0.00 0.00 41.39 3.02
2502 2564 0.885879 TCTACGGTGCGTGATCTTGT 59.114 50.000 0.00 0.00 41.39 3.16
2503 2565 1.135489 TCTACGGTGCGTGATCTTGTC 60.135 52.381 0.00 0.00 41.39 3.18
2504 2566 0.885879 TACGGTGCGTGATCTTGTCT 59.114 50.000 0.00 0.00 41.39 3.41
2505 2567 0.667487 ACGGTGCGTGATCTTGTCTG 60.667 55.000 0.00 0.00 39.18 3.51
2506 2568 0.667487 CGGTGCGTGATCTTGTCTGT 60.667 55.000 0.00 0.00 0.00 3.41
2507 2569 1.071605 GGTGCGTGATCTTGTCTGTC 58.928 55.000 0.00 0.00 0.00 3.51
2508 2570 1.071605 GTGCGTGATCTTGTCTGTCC 58.928 55.000 0.00 0.00 0.00 4.02
2509 2571 0.678950 TGCGTGATCTTGTCTGTCCA 59.321 50.000 0.00 0.00 0.00 4.02
2510 2572 1.276138 TGCGTGATCTTGTCTGTCCAT 59.724 47.619 0.00 0.00 0.00 3.41
2511 2573 2.289631 TGCGTGATCTTGTCTGTCCATT 60.290 45.455 0.00 0.00 0.00 3.16
2512 2574 2.744202 GCGTGATCTTGTCTGTCCATTT 59.256 45.455 0.00 0.00 0.00 2.32
2513 2575 3.181516 GCGTGATCTTGTCTGTCCATTTC 60.182 47.826 0.00 0.00 0.00 2.17
2514 2576 3.372206 CGTGATCTTGTCTGTCCATTTCC 59.628 47.826 0.00 0.00 0.00 3.13
2515 2577 4.326826 GTGATCTTGTCTGTCCATTTCCA 58.673 43.478 0.00 0.00 0.00 3.53
2516 2578 4.761739 GTGATCTTGTCTGTCCATTTCCAA 59.238 41.667 0.00 0.00 0.00 3.53
2517 2579 5.416952 GTGATCTTGTCTGTCCATTTCCAAT 59.583 40.000 0.00 0.00 0.00 3.16
2518 2580 5.649395 TGATCTTGTCTGTCCATTTCCAATC 59.351 40.000 0.00 0.00 0.00 2.67
2519 2581 4.335416 TCTTGTCTGTCCATTTCCAATCC 58.665 43.478 0.00 0.00 0.00 3.01
2520 2582 3.805066 TGTCTGTCCATTTCCAATCCA 57.195 42.857 0.00 0.00 0.00 3.41
2521 2583 4.111255 TGTCTGTCCATTTCCAATCCAA 57.889 40.909 0.00 0.00 0.00 3.53
2522 2584 3.826157 TGTCTGTCCATTTCCAATCCAAC 59.174 43.478 0.00 0.00 0.00 3.77
2523 2585 3.081061 TCTGTCCATTTCCAATCCAACG 58.919 45.455 0.00 0.00 0.00 4.10
2524 2586 2.164219 CTGTCCATTTCCAATCCAACGG 59.836 50.000 0.00 0.00 0.00 4.44
2525 2587 1.135112 GTCCATTTCCAATCCAACGGC 60.135 52.381 0.00 0.00 0.00 5.68
2526 2588 0.175531 CCATTTCCAATCCAACGGCC 59.824 55.000 0.00 0.00 0.00 6.13
2527 2589 0.894141 CATTTCCAATCCAACGGCCA 59.106 50.000 2.24 0.00 0.00 5.36
2528 2590 1.274728 CATTTCCAATCCAACGGCCAA 59.725 47.619 2.24 0.00 0.00 4.52
2529 2591 0.965439 TTTCCAATCCAACGGCCAAG 59.035 50.000 2.24 0.00 0.00 3.61
2530 2592 0.178975 TTCCAATCCAACGGCCAAGT 60.179 50.000 2.24 0.00 0.00 3.16
2531 2593 0.608035 TCCAATCCAACGGCCAAGTC 60.608 55.000 2.24 0.00 0.00 3.01
2532 2594 0.893270 CCAATCCAACGGCCAAGTCA 60.893 55.000 2.24 0.00 0.00 3.41
2533 2595 0.523072 CAATCCAACGGCCAAGTCAG 59.477 55.000 2.24 0.00 0.00 3.51
2534 2596 1.244019 AATCCAACGGCCAAGTCAGC 61.244 55.000 2.24 0.00 0.00 4.26
2535 2597 2.410322 ATCCAACGGCCAAGTCAGCA 62.410 55.000 2.24 0.00 0.00 4.41
2536 2598 2.192861 CCAACGGCCAAGTCAGCAA 61.193 57.895 2.24 0.00 0.00 3.91
2537 2599 1.283793 CAACGGCCAAGTCAGCAAG 59.716 57.895 2.24 0.00 0.00 4.01
2538 2600 1.898574 AACGGCCAAGTCAGCAAGG 60.899 57.895 2.24 0.00 0.00 3.61
2539 2601 3.741476 CGGCCAAGTCAGCAAGGC 61.741 66.667 2.24 0.00 46.28 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 23 0.323629 ATGGCCGTCGAAGAGGAAAA 59.676 50.000 0.00 0.00 46.48 2.29
89 91 4.528039 CCTCCCATGGCCGCCATT 62.528 66.667 22.88 5.35 42.23 3.16
110 122 2.099141 TGAACCTCTTGGATTCGCAG 57.901 50.000 0.00 0.00 37.04 5.18
178 190 2.132762 CGCAACTTAGTTTGTCCTCGT 58.867 47.619 0.00 0.00 0.00 4.18
181 193 2.158871 TGGTCGCAACTTAGTTTGTCCT 60.159 45.455 0.00 0.00 0.00 3.85
270 285 4.530857 GCATACAGCCCCGTCGCT 62.531 66.667 0.00 0.00 40.65 4.93
388 404 1.880027 AGTGATTGCGGTTCCAGTTTC 59.120 47.619 0.00 0.00 0.00 2.78
400 416 2.286294 CGTTCCAGCATCTAGTGATTGC 59.714 50.000 0.00 0.00 0.00 3.56
402 418 2.555199 GCGTTCCAGCATCTAGTGATT 58.445 47.619 0.00 0.00 37.05 2.57
442 466 1.521457 CCGGGTCGTGATCACCATG 60.521 63.158 20.03 6.58 35.35 3.66
443 467 2.900273 CCGGGTCGTGATCACCAT 59.100 61.111 20.03 0.00 35.35 3.55
477 501 1.906574 GGTTCCAGTATCCAGACACCA 59.093 52.381 0.00 0.00 0.00 4.17
478 502 1.134788 CGGTTCCAGTATCCAGACACC 60.135 57.143 0.00 0.00 0.00 4.16
520 544 2.806856 CGTAGCCGTCGTCGTAGCT 61.807 63.158 10.10 10.10 37.98 3.32
549 573 1.206578 CACCATTCGTTGTCGGTGC 59.793 57.895 0.00 0.00 42.24 5.01
580 604 1.009078 TTGCCGATCTCAGCAAATCG 58.991 50.000 11.00 0.00 45.51 3.34
590 614 0.517316 GCAAAACGAGTTGCCGATCT 59.483 50.000 14.29 0.00 46.69 2.75
599 623 0.385390 CCCTTTGCAGCAAAACGAGT 59.615 50.000 20.95 0.00 32.75 4.18
666 690 2.176546 CCTTGCAACATCGTGGCG 59.823 61.111 0.00 0.00 34.77 5.69
719 745 1.668419 GCTCGTAGTTTCCATGGCAT 58.332 50.000 6.96 0.00 0.00 4.40
720 746 0.739462 CGCTCGTAGTTTCCATGGCA 60.739 55.000 6.96 0.00 0.00 4.92
723 749 1.134367 TCCTCGCTCGTAGTTTCCATG 59.866 52.381 0.00 0.00 0.00 3.66
724 750 1.405821 CTCCTCGCTCGTAGTTTCCAT 59.594 52.381 0.00 0.00 0.00 3.41
725 751 0.809385 CTCCTCGCTCGTAGTTTCCA 59.191 55.000 0.00 0.00 0.00 3.53
727 753 2.008329 TCTCTCCTCGCTCGTAGTTTC 58.992 52.381 0.00 0.00 0.00 2.78
728 754 2.011222 CTCTCTCCTCGCTCGTAGTTT 58.989 52.381 0.00 0.00 0.00 2.66
753 782 1.747924 CCCACACACAAACACACATCA 59.252 47.619 0.00 0.00 0.00 3.07
758 787 0.039764 TTCCCCCACACACAAACACA 59.960 50.000 0.00 0.00 0.00 3.72
766 795 0.404040 CTAGCCTTTTCCCCCACACA 59.596 55.000 0.00 0.00 0.00 3.72
783 812 3.351450 CCGTCGGATCGGCATCTA 58.649 61.111 4.91 0.00 43.96 1.98
835 864 4.974438 TTGGGCCGGTCACCTCCT 62.974 66.667 9.07 0.00 0.00 3.69
841 870 2.203422 CCAGTTTTGGGCCGGTCA 60.203 61.111 9.07 1.16 41.05 4.02
1163 1198 1.080434 GCACCTCACGGACAGAGAC 60.080 63.158 0.00 0.00 35.09 3.36
1295 1330 1.379443 ATGGGAGCGTACCTCGACA 60.379 57.895 5.59 7.26 41.71 4.35
1298 1333 1.464376 ATCCATGGGAGCGTACCTCG 61.464 60.000 13.02 0.00 41.71 4.63
1323 1362 2.209064 GAGCGAGGCGTTACAGGACA 62.209 60.000 0.00 0.00 0.00 4.02
1326 1365 1.517257 CAGAGCGAGGCGTTACAGG 60.517 63.158 0.00 0.00 0.00 4.00
1328 1367 2.126071 GCAGAGCGAGGCGTTACA 60.126 61.111 0.00 0.00 0.00 2.41
1330 1369 2.181777 CAGCAGAGCGAGGCGTTA 59.818 61.111 0.00 0.00 34.54 3.18
1331 1370 3.639541 CTCAGCAGAGCGAGGCGTT 62.640 63.158 0.00 0.00 34.61 4.84
1354 1393 4.033894 GCCGTCAATAGCGAGCAT 57.966 55.556 0.00 0.00 0.00 3.79
1377 1416 2.888998 AAAACACGTCGAAGCGGGC 61.889 57.895 0.00 0.00 39.15 6.13
1378 1417 1.083015 CAAAACACGTCGAAGCGGG 60.083 57.895 0.00 0.00 41.68 6.13
1379 1418 1.721133 GCAAAACACGTCGAAGCGG 60.721 57.895 0.00 0.00 35.98 5.52
1380 1419 0.986874 CTGCAAAACACGTCGAAGCG 60.987 55.000 0.00 0.00 37.94 4.68
1381 1420 0.303493 TCTGCAAAACACGTCGAAGC 59.697 50.000 0.00 0.00 0.00 3.86
1382 1421 2.730183 TTCTGCAAAACACGTCGAAG 57.270 45.000 0.00 0.00 0.00 3.79
1383 1422 3.684103 AATTCTGCAAAACACGTCGAA 57.316 38.095 0.00 0.00 0.00 3.71
1384 1423 3.613563 GAAATTCTGCAAAACACGTCGA 58.386 40.909 0.00 0.00 0.00 4.20
1385 1424 2.397154 CGAAATTCTGCAAAACACGTCG 59.603 45.455 0.00 0.00 0.00 5.12
1392 1431 1.601663 CCACGCCGAAATTCTGCAAAA 60.602 47.619 9.87 0.00 0.00 2.44
1489 1528 2.249535 CCATCAATCCTGCGCTCCG 61.250 63.158 9.73 0.00 0.00 4.63
1546 1587 4.567159 CAGGTCTCCGCTTACTTTGTATTC 59.433 45.833 0.00 0.00 0.00 1.75
1569 1610 1.397315 GCACGCTCGTTCTTCAGAAAC 60.397 52.381 0.00 0.00 35.58 2.78
1641 1682 9.247126 CATCAGATCATTTACAGTCAGAAGTAG 57.753 37.037 0.00 0.00 0.00 2.57
1704 1745 7.306983 GCTCACTTGAATTTGAACCAGAATTTG 60.307 37.037 0.00 0.00 0.00 2.32
1748 1798 4.023792 GCATCAGTCTGAATTCACACACAA 60.024 41.667 15.12 1.91 0.00 3.33
1784 1842 7.630082 ACTGAATAATTAGCAGGGTGTTAGAA 58.370 34.615 17.49 0.00 34.05 2.10
1807 1865 7.872993 CGGACATTACATTCATACTCCATAACT 59.127 37.037 0.00 0.00 0.00 2.24
1812 1870 5.607939 ACGGACATTACATTCATACTCCA 57.392 39.130 0.00 0.00 0.00 3.86
1813 1871 6.046593 TGAACGGACATTACATTCATACTCC 58.953 40.000 0.00 0.00 0.00 3.85
1814 1872 6.978659 TCTGAACGGACATTACATTCATACTC 59.021 38.462 0.00 0.00 0.00 2.59
1815 1873 6.873997 TCTGAACGGACATTACATTCATACT 58.126 36.000 0.00 0.00 0.00 2.12
1816 1874 7.715265 ATCTGAACGGACATTACATTCATAC 57.285 36.000 0.00 0.00 0.00 2.39
1825 1883 7.979537 GGCATATACATATCTGAACGGACATTA 59.020 37.037 0.00 0.00 0.00 1.90
1841 1899 6.418101 GGGACTTCATGTATGGCATATACAT 58.582 40.000 10.92 15.97 43.67 2.29
1877 1935 9.520204 GCATGTCTTACTTTTATATGTGCAATT 57.480 29.630 0.00 0.00 0.00 2.32
1897 1957 3.829886 TCTTTCGTCCATTTGCATGTC 57.170 42.857 0.00 0.00 0.00 3.06
1916 1976 6.868864 ACACATAACTCTACACAAGACACATC 59.131 38.462 0.00 0.00 0.00 3.06
1936 1996 2.158726 ACCAACGTTTACCCAGACACAT 60.159 45.455 0.00 0.00 0.00 3.21
1941 2001 0.838608 ACCACCAACGTTTACCCAGA 59.161 50.000 0.00 0.00 0.00 3.86
1992 2052 1.133790 GCAATCATCTGGGTGCAGAAC 59.866 52.381 0.00 0.00 36.97 3.01
2072 2132 9.075678 AGTGTACCTACCACATAAGTACATATC 57.924 37.037 4.78 0.00 40.94 1.63
2080 2140 5.185249 ACAGTCAGTGTACCTACCACATAAG 59.815 44.000 0.00 0.00 37.75 1.73
2081 2141 5.081728 ACAGTCAGTGTACCTACCACATAA 58.918 41.667 0.00 0.00 37.75 1.90
2082 2142 4.669700 ACAGTCAGTGTACCTACCACATA 58.330 43.478 0.00 0.00 37.75 2.29
2083 2143 3.507411 ACAGTCAGTGTACCTACCACAT 58.493 45.455 0.00 0.00 37.75 3.21
2099 2159 5.530519 TTCAATCGCAAGTTCATACAGTC 57.469 39.130 0.00 0.00 39.48 3.51
2102 2162 5.414144 TCCATTTCAATCGCAAGTTCATACA 59.586 36.000 0.00 0.00 39.48 2.29
2148 2208 2.954318 GTCACGCTTCCAGTATACCCTA 59.046 50.000 0.00 0.00 0.00 3.53
2180 2241 1.069596 CCAGGCCCAAAACTTGCAC 59.930 57.895 0.00 0.00 0.00 4.57
2205 2266 2.125350 CTCAACTCCGAGGCAGGC 60.125 66.667 0.00 0.00 0.00 4.85
2230 2291 1.680207 GCTCCCATGGCAGATTCTTTC 59.320 52.381 6.94 0.00 0.00 2.62
2260 2322 6.092807 TGCAATTTTTGTGTGGGTTCTTAAAC 59.907 34.615 0.00 0.00 34.46 2.01
2280 2342 1.002257 TCCGTGCTGGACATGCAAT 60.002 52.632 0.00 0.00 43.74 3.56
2289 2351 2.997899 GGATCTCAATCCGTGCTGG 58.002 57.895 0.00 0.00 42.16 4.85
2297 2359 2.941720 GTCAAGGCACTGGATCTCAATC 59.058 50.000 0.00 0.00 42.38 2.67
2298 2360 2.575279 AGTCAAGGCACTGGATCTCAAT 59.425 45.455 0.00 0.00 42.38 2.57
2299 2361 1.980765 AGTCAAGGCACTGGATCTCAA 59.019 47.619 0.00 0.00 42.38 3.02
2300 2362 1.277273 CAGTCAAGGCACTGGATCTCA 59.723 52.381 0.00 0.00 42.38 3.27
2301 2363 1.552337 TCAGTCAAGGCACTGGATCTC 59.448 52.381 3.91 0.00 42.38 2.75
2302 2364 1.554160 CTCAGTCAAGGCACTGGATCT 59.446 52.381 3.91 0.00 42.38 2.75
2303 2365 2.011046 GCTCAGTCAAGGCACTGGATC 61.011 57.143 3.91 0.00 42.38 3.36
2304 2366 0.035630 GCTCAGTCAAGGCACTGGAT 60.036 55.000 3.91 0.00 42.38 3.41
2305 2367 1.372683 GCTCAGTCAAGGCACTGGA 59.627 57.895 3.91 0.00 43.59 3.86
2306 2368 1.673665 GGCTCAGTCAAGGCACTGG 60.674 63.158 3.91 0.00 43.59 4.00
2307 2369 1.071987 TGGCTCAGTCAAGGCACTG 59.928 57.895 0.00 0.00 45.83 3.66
2308 2370 3.567308 TGGCTCAGTCAAGGCACT 58.433 55.556 0.00 0.00 45.83 4.40
2313 2375 1.239968 GGTGCCTTGGCTCAGTCAAG 61.240 60.000 12.45 12.45 43.90 3.02
2314 2376 1.228245 GGTGCCTTGGCTCAGTCAA 60.228 57.895 13.18 0.00 0.00 3.18
2315 2377 2.401699 CTGGTGCCTTGGCTCAGTCA 62.402 60.000 19.36 8.36 0.00 3.41
2316 2378 1.673665 CTGGTGCCTTGGCTCAGTC 60.674 63.158 19.36 5.08 0.00 3.51
2317 2379 2.433446 CTGGTGCCTTGGCTCAGT 59.567 61.111 19.36 0.00 0.00 3.41
2318 2380 3.060615 GCTGGTGCCTTGGCTCAG 61.061 66.667 21.62 21.62 0.00 3.35
2319 2381 2.925416 TTTGCTGGTGCCTTGGCTCA 62.925 55.000 13.18 9.98 38.71 4.26
2320 2382 1.538687 ATTTGCTGGTGCCTTGGCTC 61.539 55.000 13.18 9.10 38.71 4.70
2321 2383 0.251742 TATTTGCTGGTGCCTTGGCT 60.252 50.000 13.18 0.00 38.71 4.75
2322 2384 0.174162 CTATTTGCTGGTGCCTTGGC 59.826 55.000 4.43 4.43 38.71 4.52
2323 2385 1.203052 CACTATTTGCTGGTGCCTTGG 59.797 52.381 0.00 0.00 38.71 3.61
2324 2386 1.888512 ACACTATTTGCTGGTGCCTTG 59.111 47.619 0.00 0.00 39.83 3.61
2325 2387 2.162681 GACACTATTTGCTGGTGCCTT 58.837 47.619 0.00 0.00 39.83 4.35
2326 2388 1.826385 GACACTATTTGCTGGTGCCT 58.174 50.000 0.00 0.00 39.83 4.75
2327 2389 0.447801 CGACACTATTTGCTGGTGCC 59.552 55.000 0.00 0.00 39.83 5.01
2328 2390 1.135972 CACGACACTATTTGCTGGTGC 60.136 52.381 0.00 0.00 39.83 5.01
2329 2391 1.135972 GCACGACACTATTTGCTGGTG 60.136 52.381 0.00 0.00 41.81 4.17
2330 2392 1.156736 GCACGACACTATTTGCTGGT 58.843 50.000 0.00 0.00 32.00 4.00
2331 2393 0.447801 GGCACGACACTATTTGCTGG 59.552 55.000 0.00 0.00 35.24 4.85
2332 2394 1.442769 AGGCACGACACTATTTGCTG 58.557 50.000 0.00 0.00 35.24 4.41
2333 2395 1.806542 CAAGGCACGACACTATTTGCT 59.193 47.619 0.00 0.00 35.24 3.91
2334 2396 1.729149 GCAAGGCACGACACTATTTGC 60.729 52.381 0.00 0.00 33.64 3.68
2335 2397 1.135689 GGCAAGGCACGACACTATTTG 60.136 52.381 0.00 0.00 0.00 2.32
2336 2398 1.165270 GGCAAGGCACGACACTATTT 58.835 50.000 0.00 0.00 0.00 1.40
2337 2399 0.676782 GGGCAAGGCACGACACTATT 60.677 55.000 0.00 0.00 0.00 1.73
2338 2400 1.078426 GGGCAAGGCACGACACTAT 60.078 57.895 0.00 0.00 0.00 2.12
2339 2401 2.345991 GGGCAAGGCACGACACTA 59.654 61.111 0.00 0.00 0.00 2.74
2340 2402 4.643387 GGGGCAAGGCACGACACT 62.643 66.667 0.00 0.00 29.41 3.55
2355 2417 1.449601 CGACGGACAGAAATGGGGG 60.450 63.158 0.00 0.00 0.00 5.40
2356 2418 1.449601 CCGACGGACAGAAATGGGG 60.450 63.158 8.64 0.00 0.00 4.96
2357 2419 0.178068 ATCCGACGGACAGAAATGGG 59.822 55.000 21.02 0.00 32.98 4.00
2358 2420 1.134818 TGATCCGACGGACAGAAATGG 60.135 52.381 21.02 0.00 32.98 3.16
2359 2421 2.293677 TGATCCGACGGACAGAAATG 57.706 50.000 21.02 0.00 32.98 2.32
2360 2422 2.496070 TCTTGATCCGACGGACAGAAAT 59.504 45.455 21.02 0.93 32.98 2.17
2361 2423 1.890489 TCTTGATCCGACGGACAGAAA 59.110 47.619 21.02 10.15 32.98 2.52
2362 2424 1.541379 TCTTGATCCGACGGACAGAA 58.459 50.000 21.02 11.02 32.98 3.02
2363 2425 1.541379 TTCTTGATCCGACGGACAGA 58.459 50.000 21.02 17.42 32.98 3.41
2364 2426 2.464865 GATTCTTGATCCGACGGACAG 58.535 52.381 21.02 15.34 32.98 3.51
2365 2427 1.202256 CGATTCTTGATCCGACGGACA 60.202 52.381 21.02 16.17 32.98 4.02
2366 2428 1.065102 TCGATTCTTGATCCGACGGAC 59.935 52.381 21.02 13.67 32.98 4.79
2367 2429 1.385528 TCGATTCTTGATCCGACGGA 58.614 50.000 20.85 20.85 35.55 4.69
2368 2430 2.054363 CATCGATTCTTGATCCGACGG 58.946 52.381 7.84 7.84 0.00 4.79
2369 2431 2.054363 CCATCGATTCTTGATCCGACG 58.946 52.381 0.00 0.00 0.00 5.12
2370 2432 3.053455 GACCATCGATTCTTGATCCGAC 58.947 50.000 0.00 0.00 0.00 4.79
2371 2433 2.287608 CGACCATCGATTCTTGATCCGA 60.288 50.000 0.00 0.00 43.74 4.55
2372 2434 2.054363 CGACCATCGATTCTTGATCCG 58.946 52.381 0.00 0.00 43.74 4.18
2373 2435 2.035961 TCCGACCATCGATTCTTGATCC 59.964 50.000 0.00 0.00 43.74 3.36
2374 2436 3.371102 TCCGACCATCGATTCTTGATC 57.629 47.619 0.00 0.00 43.74 2.92
2375 2437 3.321968 TCATCCGACCATCGATTCTTGAT 59.678 43.478 0.00 0.00 43.74 2.57
2376 2438 2.693074 TCATCCGACCATCGATTCTTGA 59.307 45.455 0.00 0.00 43.74 3.02
2377 2439 3.097877 TCATCCGACCATCGATTCTTG 57.902 47.619 0.00 0.00 43.74 3.02
2378 2440 3.118775 TGTTCATCCGACCATCGATTCTT 60.119 43.478 0.00 0.00 43.74 2.52
2379 2441 2.430694 TGTTCATCCGACCATCGATTCT 59.569 45.455 0.00 0.00 43.74 2.40
2380 2442 2.821546 TGTTCATCCGACCATCGATTC 58.178 47.619 0.00 0.00 43.74 2.52
2381 2443 2.979814 TGTTCATCCGACCATCGATT 57.020 45.000 0.00 0.00 43.74 3.34
2382 2444 2.365293 TCATGTTCATCCGACCATCGAT 59.635 45.455 0.00 0.00 43.74 3.59
2383 2445 1.754226 TCATGTTCATCCGACCATCGA 59.246 47.619 0.00 0.00 43.74 3.59
2384 2446 2.223537 TCATGTTCATCCGACCATCG 57.776 50.000 0.00 0.00 40.07 3.84
2385 2447 3.270027 TGTTCATGTTCATCCGACCATC 58.730 45.455 0.00 0.00 0.00 3.51
2386 2448 3.273434 CTGTTCATGTTCATCCGACCAT 58.727 45.455 0.00 0.00 0.00 3.55
2387 2449 2.615240 CCTGTTCATGTTCATCCGACCA 60.615 50.000 0.00 0.00 0.00 4.02
2388 2450 2.009774 CCTGTTCATGTTCATCCGACC 58.990 52.381 0.00 0.00 0.00 4.79
2389 2451 2.009774 CCCTGTTCATGTTCATCCGAC 58.990 52.381 0.00 0.00 0.00 4.79
2390 2452 1.065491 CCCCTGTTCATGTTCATCCGA 60.065 52.381 0.00 0.00 0.00 4.55
2391 2453 1.340017 ACCCCTGTTCATGTTCATCCG 60.340 52.381 0.00 0.00 0.00 4.18
2392 2454 2.514458 ACCCCTGTTCATGTTCATCC 57.486 50.000 0.00 0.00 0.00 3.51
2393 2455 3.941483 CAGTACCCCTGTTCATGTTCATC 59.059 47.826 0.00 0.00 36.37 2.92
2394 2456 3.873801 GCAGTACCCCTGTTCATGTTCAT 60.874 47.826 0.00 0.00 43.55 2.57
2395 2457 2.552155 GCAGTACCCCTGTTCATGTTCA 60.552 50.000 0.00 0.00 43.55 3.18
2396 2458 2.084546 GCAGTACCCCTGTTCATGTTC 58.915 52.381 0.00 0.00 43.55 3.18
2397 2459 1.705186 AGCAGTACCCCTGTTCATGTT 59.295 47.619 0.00 0.00 43.55 2.71
2398 2460 1.362224 AGCAGTACCCCTGTTCATGT 58.638 50.000 0.00 0.00 43.55 3.21
2399 2461 2.236146 TGTAGCAGTACCCCTGTTCATG 59.764 50.000 0.00 0.00 43.55 3.07
2400 2462 2.501723 CTGTAGCAGTACCCCTGTTCAT 59.498 50.000 0.00 0.00 43.55 2.57
2401 2463 1.899814 CTGTAGCAGTACCCCTGTTCA 59.100 52.381 0.00 0.00 43.55 3.18
2402 2464 1.207329 CCTGTAGCAGTACCCCTGTTC 59.793 57.143 0.00 0.00 43.55 3.18
2403 2465 1.203262 TCCTGTAGCAGTACCCCTGTT 60.203 52.381 0.00 0.00 43.55 3.16
2404 2466 0.412244 TCCTGTAGCAGTACCCCTGT 59.588 55.000 0.00 0.00 43.55 4.00
2405 2467 1.207329 GTTCCTGTAGCAGTACCCCTG 59.793 57.143 0.00 0.00 44.53 4.45
2406 2468 1.569653 GTTCCTGTAGCAGTACCCCT 58.430 55.000 0.00 0.00 0.00 4.79
2407 2469 0.540454 GGTTCCTGTAGCAGTACCCC 59.460 60.000 0.00 0.00 32.03 4.95
2408 2470 1.272807 TGGTTCCTGTAGCAGTACCC 58.727 55.000 12.16 3.20 35.08 3.69
2409 2471 2.158943 GGATGGTTCCTGTAGCAGTACC 60.159 54.545 9.38 9.38 39.14 3.34
2410 2472 2.500098 TGGATGGTTCCTGTAGCAGTAC 59.500 50.000 0.00 0.00 43.07 2.73
2411 2473 2.500098 GTGGATGGTTCCTGTAGCAGTA 59.500 50.000 0.00 0.00 43.07 2.74
2412 2474 1.279271 GTGGATGGTTCCTGTAGCAGT 59.721 52.381 0.00 0.00 43.07 4.40
2413 2475 1.278985 TGTGGATGGTTCCTGTAGCAG 59.721 52.381 0.00 0.00 43.07 4.24
2414 2476 1.278985 CTGTGGATGGTTCCTGTAGCA 59.721 52.381 0.00 0.00 43.07 3.49
2415 2477 1.279271 ACTGTGGATGGTTCCTGTAGC 59.721 52.381 0.00 0.00 43.07 3.58
2416 2478 3.513912 TGTACTGTGGATGGTTCCTGTAG 59.486 47.826 0.00 0.00 43.07 2.74
2417 2479 3.512496 TGTACTGTGGATGGTTCCTGTA 58.488 45.455 0.00 0.00 43.07 2.74
2418 2480 2.334977 TGTACTGTGGATGGTTCCTGT 58.665 47.619 0.00 0.00 43.07 4.00
2419 2481 3.417069 TTGTACTGTGGATGGTTCCTG 57.583 47.619 0.00 0.00 43.07 3.86
2420 2482 3.846588 AGATTGTACTGTGGATGGTTCCT 59.153 43.478 0.00 0.00 43.07 3.36
2421 2483 3.941483 CAGATTGTACTGTGGATGGTTCC 59.059 47.826 0.00 0.00 42.94 3.62
2422 2484 3.375299 GCAGATTGTACTGTGGATGGTTC 59.625 47.826 0.00 0.00 39.73 3.62
2423 2485 3.009473 AGCAGATTGTACTGTGGATGGTT 59.991 43.478 0.00 0.00 39.73 3.67
2424 2486 2.573462 AGCAGATTGTACTGTGGATGGT 59.427 45.455 0.00 0.00 39.73 3.55
2425 2487 3.272574 AGCAGATTGTACTGTGGATGG 57.727 47.619 0.00 0.00 39.73 3.51
2426 2488 4.758688 TGTAGCAGATTGTACTGTGGATG 58.241 43.478 0.00 0.00 39.73 3.51
2427 2489 4.711846 TCTGTAGCAGATTGTACTGTGGAT 59.288 41.667 0.00 0.00 35.39 3.41
2428 2490 4.086457 TCTGTAGCAGATTGTACTGTGGA 58.914 43.478 0.00 0.00 35.39 4.02
2429 2491 4.081972 ACTCTGTAGCAGATTGTACTGTGG 60.082 45.833 0.00 0.00 39.92 4.17
2430 2492 5.065704 ACTCTGTAGCAGATTGTACTGTG 57.934 43.478 0.00 0.00 39.92 3.66
2431 2493 5.478679 AGAACTCTGTAGCAGATTGTACTGT 59.521 40.000 0.00 0.00 39.92 3.55
2432 2494 5.960113 AGAACTCTGTAGCAGATTGTACTG 58.040 41.667 0.00 0.00 39.92 2.74
2433 2495 6.597832 AAGAACTCTGTAGCAGATTGTACT 57.402 37.500 0.00 0.00 39.92 2.73
2434 2496 6.868864 TGAAAGAACTCTGTAGCAGATTGTAC 59.131 38.462 0.00 0.00 39.92 2.90
2435 2497 6.868864 GTGAAAGAACTCTGTAGCAGATTGTA 59.131 38.462 0.00 0.00 39.92 2.41
2436 2498 5.698545 GTGAAAGAACTCTGTAGCAGATTGT 59.301 40.000 0.00 0.00 39.92 2.71
2437 2499 5.698089 TGTGAAAGAACTCTGTAGCAGATTG 59.302 40.000 0.00 0.00 39.92 2.67
2438 2500 5.858381 TGTGAAAGAACTCTGTAGCAGATT 58.142 37.500 0.00 0.00 39.92 2.40
2439 2501 5.244851 TCTGTGAAAGAACTCTGTAGCAGAT 59.755 40.000 0.00 0.00 34.11 2.90
2440 2502 4.584743 TCTGTGAAAGAACTCTGTAGCAGA 59.415 41.667 0.00 0.00 33.72 4.26
2441 2503 4.876125 TCTGTGAAAGAACTCTGTAGCAG 58.124 43.478 0.00 0.00 29.54 4.24
2442 2504 4.937201 TCTGTGAAAGAACTCTGTAGCA 57.063 40.909 0.00 0.00 29.54 3.49
2443 2505 4.560819 CGATCTGTGAAAGAACTCTGTAGC 59.439 45.833 0.00 0.00 38.79 3.58
2444 2506 5.098893 CCGATCTGTGAAAGAACTCTGTAG 58.901 45.833 0.00 0.00 38.79 2.74
2445 2507 4.523173 ACCGATCTGTGAAAGAACTCTGTA 59.477 41.667 0.00 0.00 38.79 2.74
2446 2508 3.322254 ACCGATCTGTGAAAGAACTCTGT 59.678 43.478 0.00 0.00 38.79 3.41
2447 2509 3.677121 CACCGATCTGTGAAAGAACTCTG 59.323 47.826 11.51 0.00 38.79 3.35
2448 2510 3.862642 GCACCGATCTGTGAAAGAACTCT 60.863 47.826 20.09 0.00 38.79 3.24
2449 2511 2.413453 GCACCGATCTGTGAAAGAACTC 59.587 50.000 20.09 0.00 38.79 3.01
2450 2512 2.037772 AGCACCGATCTGTGAAAGAACT 59.962 45.455 20.09 4.52 38.79 3.01
2451 2513 2.417719 AGCACCGATCTGTGAAAGAAC 58.582 47.619 20.09 2.33 38.79 3.01
2452 2514 2.839486 AGCACCGATCTGTGAAAGAA 57.161 45.000 20.09 0.00 38.79 2.52
2453 2515 2.560981 TGTAGCACCGATCTGTGAAAGA 59.439 45.455 20.09 3.68 38.55 2.52
2454 2516 2.926200 CTGTAGCACCGATCTGTGAAAG 59.074 50.000 20.09 7.71 38.55 2.62
2455 2517 2.299013 ACTGTAGCACCGATCTGTGAAA 59.701 45.455 20.09 4.88 38.55 2.69
2456 2518 1.893137 ACTGTAGCACCGATCTGTGAA 59.107 47.619 20.09 5.22 38.55 3.18
2457 2519 1.545841 ACTGTAGCACCGATCTGTGA 58.454 50.000 20.09 0.00 38.55 3.58
2458 2520 2.163613 TGTACTGTAGCACCGATCTGTG 59.836 50.000 12.50 12.50 39.29 3.66
2459 2521 2.443416 TGTACTGTAGCACCGATCTGT 58.557 47.619 0.00 0.00 0.00 3.41
2460 2522 3.717400 ATGTACTGTAGCACCGATCTG 57.283 47.619 0.00 0.00 0.00 2.90
2461 2523 5.770663 AGATTATGTACTGTAGCACCGATCT 59.229 40.000 0.00 0.00 0.00 2.75
2462 2524 6.015027 AGATTATGTACTGTAGCACCGATC 57.985 41.667 0.00 0.00 0.00 3.69
2463 2525 6.348295 CGTAGATTATGTACTGTAGCACCGAT 60.348 42.308 0.00 0.00 0.00 4.18
2464 2526 5.049886 CGTAGATTATGTACTGTAGCACCGA 60.050 44.000 0.00 0.00 0.00 4.69
2465 2527 5.145059 CGTAGATTATGTACTGTAGCACCG 58.855 45.833 0.00 0.00 0.00 4.94
2466 2528 5.009410 ACCGTAGATTATGTACTGTAGCACC 59.991 44.000 0.00 0.00 0.00 5.01
2467 2529 5.913514 CACCGTAGATTATGTACTGTAGCAC 59.086 44.000 0.00 0.00 0.00 4.40
2468 2530 5.506815 GCACCGTAGATTATGTACTGTAGCA 60.507 44.000 0.00 0.00 0.00 3.49
2469 2531 4.916249 GCACCGTAGATTATGTACTGTAGC 59.084 45.833 0.00 1.36 0.00 3.58
2470 2532 5.145059 CGCACCGTAGATTATGTACTGTAG 58.855 45.833 0.00 0.00 0.00 2.74
2471 2533 4.576053 ACGCACCGTAGATTATGTACTGTA 59.424 41.667 0.00 0.00 38.73 2.74
2472 2534 3.379372 ACGCACCGTAGATTATGTACTGT 59.621 43.478 0.00 0.00 38.73 3.55
2473 2535 3.729217 CACGCACCGTAGATTATGTACTG 59.271 47.826 0.00 0.00 38.32 2.74
2474 2536 3.628942 TCACGCACCGTAGATTATGTACT 59.371 43.478 0.00 0.00 38.32 2.73
2475 2537 3.956233 TCACGCACCGTAGATTATGTAC 58.044 45.455 0.00 0.00 38.32 2.90
2476 2538 4.517832 AGATCACGCACCGTAGATTATGTA 59.482 41.667 0.00 0.00 38.32 2.29
2477 2539 3.318275 AGATCACGCACCGTAGATTATGT 59.682 43.478 0.00 0.00 38.32 2.29
2478 2540 3.902150 AGATCACGCACCGTAGATTATG 58.098 45.455 0.00 0.00 38.32 1.90
2479 2541 4.202121 ACAAGATCACGCACCGTAGATTAT 60.202 41.667 0.00 0.00 38.32 1.28
2480 2542 3.129813 ACAAGATCACGCACCGTAGATTA 59.870 43.478 0.00 0.00 38.32 1.75
2481 2543 2.094182 ACAAGATCACGCACCGTAGATT 60.094 45.455 0.00 0.00 38.32 2.40
2482 2544 1.476891 ACAAGATCACGCACCGTAGAT 59.523 47.619 0.00 0.00 38.32 1.98
2483 2545 0.885879 ACAAGATCACGCACCGTAGA 59.114 50.000 0.00 0.00 38.32 2.59
2484 2546 1.135373 AGACAAGATCACGCACCGTAG 60.135 52.381 0.00 0.00 38.32 3.51
2485 2547 0.885879 AGACAAGATCACGCACCGTA 59.114 50.000 0.00 0.00 38.32 4.02
2486 2548 0.667487 CAGACAAGATCACGCACCGT 60.667 55.000 0.00 0.00 42.36 4.83
2487 2549 0.667487 ACAGACAAGATCACGCACCG 60.667 55.000 0.00 0.00 0.00 4.94
2488 2550 1.071605 GACAGACAAGATCACGCACC 58.928 55.000 0.00 0.00 0.00 5.01
2489 2551 1.071605 GGACAGACAAGATCACGCAC 58.928 55.000 0.00 0.00 0.00 5.34
2490 2552 0.678950 TGGACAGACAAGATCACGCA 59.321 50.000 0.00 0.00 0.00 5.24
2491 2553 2.015736 ATGGACAGACAAGATCACGC 57.984 50.000 0.00 0.00 0.00 5.34
2492 2554 3.372206 GGAAATGGACAGACAAGATCACG 59.628 47.826 0.00 0.00 0.00 4.35
2493 2555 4.326826 TGGAAATGGACAGACAAGATCAC 58.673 43.478 0.00 0.00 0.00 3.06
2494 2556 4.639078 TGGAAATGGACAGACAAGATCA 57.361 40.909 0.00 0.00 0.00 2.92
2495 2557 5.067023 GGATTGGAAATGGACAGACAAGATC 59.933 44.000 0.00 0.00 0.00 2.75
2496 2558 4.952335 GGATTGGAAATGGACAGACAAGAT 59.048 41.667 0.00 0.00 0.00 2.40
2497 2559 4.202556 TGGATTGGAAATGGACAGACAAGA 60.203 41.667 0.00 0.00 0.00 3.02
2498 2560 4.081406 TGGATTGGAAATGGACAGACAAG 58.919 43.478 0.00 0.00 0.00 3.16
2499 2561 4.111255 TGGATTGGAAATGGACAGACAA 57.889 40.909 0.00 0.00 0.00 3.18
2500 2562 3.805066 TGGATTGGAAATGGACAGACA 57.195 42.857 0.00 0.00 0.00 3.41
2501 2563 3.119849 CGTTGGATTGGAAATGGACAGAC 60.120 47.826 0.00 0.00 0.00 3.51
2502 2564 3.081061 CGTTGGATTGGAAATGGACAGA 58.919 45.455 0.00 0.00 0.00 3.41
2503 2565 2.164219 CCGTTGGATTGGAAATGGACAG 59.836 50.000 0.00 0.00 34.87 3.51
2504 2566 2.166829 CCGTTGGATTGGAAATGGACA 58.833 47.619 0.00 0.00 34.87 4.02
2505 2567 1.135112 GCCGTTGGATTGGAAATGGAC 60.135 52.381 0.00 0.00 34.87 4.02
2506 2568 1.181786 GCCGTTGGATTGGAAATGGA 58.818 50.000 0.00 0.00 34.87 3.41
2507 2569 0.175531 GGCCGTTGGATTGGAAATGG 59.824 55.000 0.00 0.00 35.84 3.16
2508 2570 0.894141 TGGCCGTTGGATTGGAAATG 59.106 50.000 0.00 0.00 0.00 2.32
2509 2571 1.550072 CTTGGCCGTTGGATTGGAAAT 59.450 47.619 0.00 0.00 0.00 2.17
2510 2572 0.965439 CTTGGCCGTTGGATTGGAAA 59.035 50.000 0.00 0.00 0.00 3.13
2511 2573 0.178975 ACTTGGCCGTTGGATTGGAA 60.179 50.000 0.00 0.00 0.00 3.53
2512 2574 0.608035 GACTTGGCCGTTGGATTGGA 60.608 55.000 0.00 0.00 0.00 3.53
2513 2575 0.893270 TGACTTGGCCGTTGGATTGG 60.893 55.000 0.00 0.00 0.00 3.16
2514 2576 0.523072 CTGACTTGGCCGTTGGATTG 59.477 55.000 0.00 0.00 0.00 2.67
2515 2577 1.244019 GCTGACTTGGCCGTTGGATT 61.244 55.000 0.00 0.00 0.00 3.01
2516 2578 1.675641 GCTGACTTGGCCGTTGGAT 60.676 57.895 0.00 0.00 0.00 3.41
2517 2579 2.281484 GCTGACTTGGCCGTTGGA 60.281 61.111 0.00 0.00 0.00 3.53
2518 2580 2.133742 CTTGCTGACTTGGCCGTTGG 62.134 60.000 0.00 0.00 0.00 3.77
2519 2581 1.283793 CTTGCTGACTTGGCCGTTG 59.716 57.895 0.00 0.00 0.00 4.10
2520 2582 1.898574 CCTTGCTGACTTGGCCGTT 60.899 57.895 0.00 0.00 0.00 4.44
2521 2583 2.281761 CCTTGCTGACTTGGCCGT 60.282 61.111 0.00 0.00 0.00 5.68
2522 2584 3.741476 GCCTTGCTGACTTGGCCG 61.741 66.667 0.00 0.00 39.49 6.13
2523 2585 2.598394 TGCCTTGCTGACTTGGCC 60.598 61.111 0.00 0.00 44.32 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.