Multiple sequence alignment - TraesCS3B01G469400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G469400 chr3B 100.000 3099 0 0 1 3099 716297487 716294389 0.000000e+00 5723.0
1 TraesCS3B01G469400 chr3B 86.199 855 88 8 1035 1888 716241787 716240962 0.000000e+00 898.0
2 TraesCS3B01G469400 chr3B 93.204 412 28 0 1 412 774461262 774461673 9.500000e-170 606.0
3 TraesCS3B01G469400 chr3B 76.296 270 36 9 1931 2196 716157733 716157488 5.430000e-23 119.0
4 TraesCS3B01G469400 chr3B 82.353 102 15 3 567 665 716243643 716243542 5.510000e-13 86.1
5 TraesCS3B01G469400 chr3D 95.116 1904 38 12 420 2303 540153977 540152109 0.000000e+00 2950.0
6 TraesCS3B01G469400 chr3D 90.496 705 56 4 1151 1854 540127695 540127001 0.000000e+00 920.0
7 TraesCS3B01G469400 chr3D 93.046 417 22 5 2688 3098 540151831 540151416 1.230000e-168 603.0
8 TraesCS3B01G469400 chr3D 88.406 414 46 2 1 413 366432373 366432785 5.970000e-137 497.0
9 TraesCS3B01G469400 chr3D 89.928 278 17 5 2357 2626 540152106 540151832 6.360000e-92 348.0
10 TraesCS3B01G469400 chr3D 83.744 203 21 10 2728 2930 540125674 540125484 6.830000e-42 182.0
11 TraesCS3B01G469400 chr3D 75.532 282 33 22 546 799 540128710 540128437 4.230000e-19 106.0
12 TraesCS3B01G469400 chr3D 88.312 77 4 2 3012 3088 540111653 540111582 1.530000e-13 87.9
13 TraesCS3B01G469400 chr3A 90.338 1480 62 20 722 2150 675154682 675153233 0.000000e+00 1866.0
14 TraesCS3B01G469400 chr3A 89.637 579 38 7 2510 3085 675152414 675151855 0.000000e+00 717.0
15 TraesCS3B01G469400 chr3A 88.278 418 46 3 1 417 640451309 640451724 5.970000e-137 497.0
16 TraesCS3B01G469400 chr3A 91.813 342 23 3 2179 2519 675153244 675152907 3.620000e-129 472.0
17 TraesCS3B01G469400 chr3A 87.705 244 17 5 420 656 675154930 675154693 3.940000e-69 272.0
18 TraesCS3B01G469400 chr2A 83.084 869 89 26 1159 1985 643007844 643008696 0.000000e+00 737.0
19 TraesCS3B01G469400 chr2A 81.352 858 97 36 1159 1985 643016370 643017195 9.370000e-180 640.0
20 TraesCS3B01G469400 chr2A 90.821 414 37 1 1 413 27510699 27511112 1.260000e-153 553.0
21 TraesCS3B01G469400 chr2A 92.683 41 3 0 2983 3023 68246192 68246232 3.340000e-05 60.2
22 TraesCS3B01G469400 chr2B 85.915 710 67 17 1159 1841 584873711 584874414 0.000000e+00 726.0
23 TraesCS3B01G469400 chr2B 80.294 883 110 36 1150 2002 584893602 584894450 2.640000e-170 608.0
24 TraesCS3B01G469400 chr2B 97.826 138 3 0 2341 2478 793321460 793321597 3.990000e-59 239.0
25 TraesCS3B01G469400 chr2B 78.740 127 22 4 2908 3031 142749585 142749709 2.560000e-11 80.5
26 TraesCS3B01G469400 chr2D 82.271 863 92 33 1159 1985 498276212 498277049 0.000000e+00 689.0
27 TraesCS3B01G469400 chr2D 81.452 868 97 33 1159 2002 498282278 498283105 0.000000e+00 652.0
28 TraesCS3B01G469400 chr2D 80.283 847 118 25 1159 1991 498265307 498266118 7.400000e-166 593.0
29 TraesCS3B01G469400 chr2D 100.000 28 0 0 2239 2266 498317807 498317834 6.000000e-03 52.8
30 TraesCS3B01G469400 chr5B 96.368 413 15 0 1 413 106806445 106806857 0.000000e+00 680.0
31 TraesCS3B01G469400 chr5B 78.261 115 21 3 2916 3029 440182153 440182264 1.540000e-08 71.3
32 TraesCS3B01G469400 chr4A 94.431 413 22 1 1 413 655670534 655670123 4.360000e-178 634.0
33 TraesCS3B01G469400 chr4B 91.924 421 32 2 1 419 189416544 189416964 3.440000e-164 588.0
34 TraesCS3B01G469400 chr4B 82.301 113 12 6 2908 3018 610571528 610571422 1.180000e-14 91.6
35 TraesCS3B01G469400 chr5A 89.855 414 40 2 1 413 618269462 618269874 5.880000e-147 531.0
36 TraesCS3B01G469400 chr5D 88.136 413 48 1 1 413 24779981 24780392 9.990000e-135 490.0
37 TraesCS3B01G469400 chr1D 78.808 151 22 7 2881 3030 95870077 95870218 3.290000e-15 93.5
38 TraesCS3B01G469400 chr6A 78.102 137 24 4 2883 3018 409086294 409086425 7.120000e-12 82.4
39 TraesCS3B01G469400 chr7D 84.483 58 5 3 2962 3017 94796690 94796745 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G469400 chr3B 716294389 716297487 3098 True 5723.000000 5723 100.000000 1 3099 1 chr3B.!!$R2 3098
1 TraesCS3B01G469400 chr3B 716240962 716243643 2681 True 492.050000 898 84.276000 567 1888 2 chr3B.!!$R3 1321
2 TraesCS3B01G469400 chr3D 540151416 540153977 2561 True 1300.333333 2950 92.696667 420 3098 3 chr3D.!!$R3 2678
3 TraesCS3B01G469400 chr3D 540125484 540128710 3226 True 402.666667 920 83.257333 546 2930 3 chr3D.!!$R2 2384
4 TraesCS3B01G469400 chr3A 675151855 675154930 3075 True 831.750000 1866 89.873250 420 3085 4 chr3A.!!$R1 2665
5 TraesCS3B01G469400 chr2A 643007844 643008696 852 False 737.000000 737 83.084000 1159 1985 1 chr2A.!!$F3 826
6 TraesCS3B01G469400 chr2A 643016370 643017195 825 False 640.000000 640 81.352000 1159 1985 1 chr2A.!!$F4 826
7 TraesCS3B01G469400 chr2B 584873711 584874414 703 False 726.000000 726 85.915000 1159 1841 1 chr2B.!!$F2 682
8 TraesCS3B01G469400 chr2B 584893602 584894450 848 False 608.000000 608 80.294000 1150 2002 1 chr2B.!!$F3 852
9 TraesCS3B01G469400 chr2D 498276212 498277049 837 False 689.000000 689 82.271000 1159 1985 1 chr2D.!!$F2 826
10 TraesCS3B01G469400 chr2D 498282278 498283105 827 False 652.000000 652 81.452000 1159 2002 1 chr2D.!!$F3 843
11 TraesCS3B01G469400 chr2D 498265307 498266118 811 False 593.000000 593 80.283000 1159 1991 1 chr2D.!!$F1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.032678 CCTCAGCTTCGCGGATGTAT 59.967 55.0 6.13 0.0 31.76 2.29 F
1002 2521 0.040157 CACCGTTTCACCACTGCATG 60.040 55.0 0.00 0.0 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 4049 0.598562 GTCAGAGACAGCCAGAACGA 59.401 55.0 0.0 0.0 32.09 3.85 R
2460 5052 0.099082 GTAGAACTCGACGGAGCAGG 59.901 60.0 0.0 0.0 44.48 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.624697 TTAAATATCAGCAAATGTGAAGTTGTC 57.375 29.630 0.00 0.00 0.00 3.18
43 44 3.607422 TCAGCAAATGTGAAGTTGTCG 57.393 42.857 0.00 0.00 0.00 4.35
44 45 3.202097 TCAGCAAATGTGAAGTTGTCGA 58.798 40.909 0.00 0.00 0.00 4.20
45 46 3.248363 TCAGCAAATGTGAAGTTGTCGAG 59.752 43.478 0.00 0.00 0.00 4.04
46 47 3.002656 CAGCAAATGTGAAGTTGTCGAGT 59.997 43.478 0.00 0.00 0.00 4.18
47 48 3.002656 AGCAAATGTGAAGTTGTCGAGTG 59.997 43.478 0.00 0.00 0.00 3.51
48 49 3.849645 GCAAATGTGAAGTTGTCGAGTGG 60.850 47.826 0.00 0.00 0.00 4.00
49 50 2.910688 ATGTGAAGTTGTCGAGTGGT 57.089 45.000 0.00 0.00 0.00 4.16
50 51 2.684001 TGTGAAGTTGTCGAGTGGTT 57.316 45.000 0.00 0.00 0.00 3.67
51 52 3.804786 TGTGAAGTTGTCGAGTGGTTA 57.195 42.857 0.00 0.00 0.00 2.85
52 53 3.713288 TGTGAAGTTGTCGAGTGGTTAG 58.287 45.455 0.00 0.00 0.00 2.34
53 54 2.475487 GTGAAGTTGTCGAGTGGTTAGC 59.525 50.000 0.00 0.00 0.00 3.09
54 55 2.067013 GAAGTTGTCGAGTGGTTAGCC 58.933 52.381 0.00 0.00 0.00 3.93
55 56 0.038526 AGTTGTCGAGTGGTTAGCCG 60.039 55.000 0.00 0.00 37.67 5.52
56 57 1.373748 TTGTCGAGTGGTTAGCCGC 60.374 57.895 0.01 0.01 45.35 6.53
69 70 4.824166 GCCGCATGCGCTTGAGTG 62.824 66.667 34.00 19.23 38.24 3.51
70 71 4.170062 CCGCATGCGCTTGAGTGG 62.170 66.667 34.00 18.46 38.24 4.00
71 72 3.425713 CGCATGCGCTTGAGTGGT 61.426 61.111 29.09 0.00 35.30 4.16
72 73 2.100031 CGCATGCGCTTGAGTGGTA 61.100 57.895 29.09 0.00 35.30 3.25
73 74 1.425428 GCATGCGCTTGAGTGGTAC 59.575 57.895 25.77 3.47 34.30 3.34
74 75 1.709760 CATGCGCTTGAGTGGTACG 59.290 57.895 17.78 0.00 0.00 3.67
75 76 1.014044 CATGCGCTTGAGTGGTACGT 61.014 55.000 17.78 0.00 0.00 3.57
76 77 0.736325 ATGCGCTTGAGTGGTACGTC 60.736 55.000 9.73 0.00 0.00 4.34
77 78 2.434134 GCGCTTGAGTGGTACGTCG 61.434 63.158 0.00 0.00 0.00 5.12
78 79 1.081641 CGCTTGAGTGGTACGTCGT 60.082 57.895 2.21 2.21 0.00 4.34
79 80 0.662374 CGCTTGAGTGGTACGTCGTT 60.662 55.000 1.78 0.00 0.00 3.85
80 81 0.782384 GCTTGAGTGGTACGTCGTTG 59.218 55.000 1.78 0.00 0.00 4.10
81 82 1.415374 CTTGAGTGGTACGTCGTTGG 58.585 55.000 1.78 0.00 0.00 3.77
82 83 0.746063 TTGAGTGGTACGTCGTTGGT 59.254 50.000 1.78 0.00 0.00 3.67
83 84 0.746063 TGAGTGGTACGTCGTTGGTT 59.254 50.000 1.78 0.00 0.00 3.67
84 85 1.269206 TGAGTGGTACGTCGTTGGTTC 60.269 52.381 1.78 0.00 0.00 3.62
85 86 0.318107 AGTGGTACGTCGTTGGTTCG 60.318 55.000 1.78 0.00 0.00 3.95
86 87 0.317770 GTGGTACGTCGTTGGTTCGA 60.318 55.000 1.78 0.00 37.51 3.71
87 88 0.597568 TGGTACGTCGTTGGTTCGAT 59.402 50.000 1.78 0.00 41.78 3.59
88 89 1.262882 GGTACGTCGTTGGTTCGATC 58.737 55.000 1.78 0.00 41.78 3.69
89 90 1.262882 GTACGTCGTTGGTTCGATCC 58.737 55.000 1.78 5.52 41.78 3.36
90 91 0.880441 TACGTCGTTGGTTCGATCCA 59.120 50.000 11.25 11.25 41.78 3.41
91 92 0.388134 ACGTCGTTGGTTCGATCCAG 60.388 55.000 14.62 5.50 41.78 3.86
92 93 1.683790 CGTCGTTGGTTCGATCCAGC 61.684 60.000 16.90 16.90 41.78 4.85
93 94 0.669318 GTCGTTGGTTCGATCCAGCA 60.669 55.000 23.78 11.83 41.78 4.41
94 95 0.669318 TCGTTGGTTCGATCCAGCAC 60.669 55.000 23.78 15.70 38.35 4.40
95 96 0.948623 CGTTGGTTCGATCCAGCACA 60.949 55.000 23.78 5.53 38.35 4.57
96 97 0.517316 GTTGGTTCGATCCAGCACAC 59.483 55.000 20.67 10.89 38.33 3.82
97 98 0.605319 TTGGTTCGATCCAGCACACC 60.605 55.000 14.62 3.59 38.80 4.16
98 99 1.003839 GGTTCGATCCAGCACACCA 60.004 57.895 7.68 0.00 0.00 4.17
99 100 1.021390 GGTTCGATCCAGCACACCAG 61.021 60.000 7.68 0.00 0.00 4.00
100 101 0.320771 GTTCGATCCAGCACACCAGT 60.321 55.000 0.00 0.00 0.00 4.00
101 102 0.396435 TTCGATCCAGCACACCAGTT 59.604 50.000 0.00 0.00 0.00 3.16
102 103 0.396435 TCGATCCAGCACACCAGTTT 59.604 50.000 0.00 0.00 0.00 2.66
103 104 1.202758 TCGATCCAGCACACCAGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
104 105 2.037902 TCGATCCAGCACACCAGTTTTA 59.962 45.455 0.00 0.00 0.00 1.52
105 106 2.811431 CGATCCAGCACACCAGTTTTAA 59.189 45.455 0.00 0.00 0.00 1.52
106 107 3.440173 CGATCCAGCACACCAGTTTTAAT 59.560 43.478 0.00 0.00 0.00 1.40
107 108 4.082787 CGATCCAGCACACCAGTTTTAATT 60.083 41.667 0.00 0.00 0.00 1.40
108 109 5.564651 CGATCCAGCACACCAGTTTTAATTT 60.565 40.000 0.00 0.00 0.00 1.82
109 110 4.942852 TCCAGCACACCAGTTTTAATTTG 58.057 39.130 0.00 0.00 0.00 2.32
110 111 3.494251 CCAGCACACCAGTTTTAATTTGC 59.506 43.478 0.00 0.00 0.00 3.68
111 112 4.118410 CAGCACACCAGTTTTAATTTGCA 58.882 39.130 0.00 0.00 0.00 4.08
112 113 4.751098 CAGCACACCAGTTTTAATTTGCAT 59.249 37.500 0.00 0.00 0.00 3.96
113 114 4.990426 AGCACACCAGTTTTAATTTGCATC 59.010 37.500 0.00 0.00 0.00 3.91
114 115 4.990426 GCACACCAGTTTTAATTTGCATCT 59.010 37.500 0.00 0.00 0.00 2.90
115 116 5.466393 GCACACCAGTTTTAATTTGCATCTT 59.534 36.000 0.00 0.00 0.00 2.40
116 117 6.644592 GCACACCAGTTTTAATTTGCATCTTA 59.355 34.615 0.00 0.00 0.00 2.10
117 118 7.331687 GCACACCAGTTTTAATTTGCATCTTAT 59.668 33.333 0.00 0.00 0.00 1.73
118 119 9.853555 CACACCAGTTTTAATTTGCATCTTATA 57.146 29.630 0.00 0.00 0.00 0.98
163 164 8.459521 TTTTATAATTTGTCAGTTTCGCCATG 57.540 30.769 0.00 0.00 0.00 3.66
164 165 5.895636 ATAATTTGTCAGTTTCGCCATGA 57.104 34.783 0.00 0.00 0.00 3.07
165 166 4.789012 AATTTGTCAGTTTCGCCATGAT 57.211 36.364 0.00 0.00 0.00 2.45
166 167 3.557577 TTTGTCAGTTTCGCCATGATG 57.442 42.857 0.00 0.00 0.00 3.07
167 168 1.452110 TGTCAGTTTCGCCATGATGG 58.548 50.000 7.21 7.21 41.55 3.51
182 183 6.713762 CCATGATGGCCTTATTGTAAGAAA 57.286 37.500 3.32 0.00 0.00 2.52
183 184 7.111247 CCATGATGGCCTTATTGTAAGAAAA 57.889 36.000 3.32 0.00 0.00 2.29
184 185 7.729116 CCATGATGGCCTTATTGTAAGAAAAT 58.271 34.615 3.32 0.00 0.00 1.82
185 186 8.859090 CCATGATGGCCTTATTGTAAGAAAATA 58.141 33.333 3.32 0.00 0.00 1.40
191 192 8.700973 TGGCCTTATTGTAAGAAAATAATTCCC 58.299 33.333 3.32 0.00 31.03 3.97
192 193 7.865889 GGCCTTATTGTAAGAAAATAATTCCCG 59.134 37.037 0.00 0.00 31.03 5.14
193 194 8.626526 GCCTTATTGTAAGAAAATAATTCCCGA 58.373 33.333 0.00 0.00 31.03 5.14
196 197 9.689501 TTATTGTAAGAAAATAATTCCCGAGGT 57.310 29.630 0.00 0.00 0.00 3.85
197 198 8.589701 ATTGTAAGAAAATAATTCCCGAGGTT 57.410 30.769 0.00 0.00 0.00 3.50
198 199 8.411991 TTGTAAGAAAATAATTCCCGAGGTTT 57.588 30.769 0.00 0.00 0.00 3.27
199 200 8.047413 TGTAAGAAAATAATTCCCGAGGTTTC 57.953 34.615 0.00 0.00 0.00 2.78
200 201 6.525578 AAGAAAATAATTCCCGAGGTTTCC 57.474 37.500 0.00 0.00 0.00 3.13
201 202 4.954202 AGAAAATAATTCCCGAGGTTTCCC 59.046 41.667 0.00 0.00 0.00 3.97
202 203 3.308035 AATAATTCCCGAGGTTTCCCC 57.692 47.619 0.00 0.00 0.00 4.81
203 204 1.671293 TAATTCCCGAGGTTTCCCCA 58.329 50.000 0.00 0.00 34.66 4.96
204 205 0.039180 AATTCCCGAGGTTTCCCCAC 59.961 55.000 0.00 0.00 34.66 4.61
205 206 1.137594 ATTCCCGAGGTTTCCCCACA 61.138 55.000 0.00 0.00 34.66 4.17
206 207 1.354168 TTCCCGAGGTTTCCCCACAA 61.354 55.000 0.00 0.00 34.66 3.33
207 208 1.151908 CCCGAGGTTTCCCCACAAA 59.848 57.895 0.00 0.00 34.66 2.83
208 209 0.468400 CCCGAGGTTTCCCCACAAAA 60.468 55.000 0.00 0.00 34.66 2.44
209 210 1.404843 CCGAGGTTTCCCCACAAAAA 58.595 50.000 0.00 0.00 34.66 1.94
224 225 3.392066 AAAAATAGGCCACACCCCC 57.608 52.632 5.01 0.00 40.58 5.40
225 226 0.790339 AAAAATAGGCCACACCCCCT 59.210 50.000 5.01 0.00 40.58 4.79
226 227 0.790339 AAAATAGGCCACACCCCCTT 59.210 50.000 5.01 0.00 40.58 3.95
227 228 0.041090 AAATAGGCCACACCCCCTTG 59.959 55.000 5.01 0.00 40.58 3.61
228 229 1.146544 AATAGGCCACACCCCCTTGT 61.147 55.000 5.01 0.00 40.58 3.16
229 230 1.571773 ATAGGCCACACCCCCTTGTC 61.572 60.000 5.01 0.00 40.58 3.18
230 231 2.993038 TAGGCCACACCCCCTTGTCA 62.993 60.000 5.01 0.00 40.58 3.58
231 232 2.197324 GCCACACCCCCTTGTCAA 59.803 61.111 0.00 0.00 0.00 3.18
232 233 1.228862 GCCACACCCCCTTGTCAAT 60.229 57.895 0.00 0.00 0.00 2.57
233 234 1.535204 GCCACACCCCCTTGTCAATG 61.535 60.000 0.00 0.00 0.00 2.82
234 235 0.112218 CCACACCCCCTTGTCAATGA 59.888 55.000 0.00 0.00 0.00 2.57
235 236 1.247567 CACACCCCCTTGTCAATGAC 58.752 55.000 6.41 6.41 0.00 3.06
236 237 0.850100 ACACCCCCTTGTCAATGACA 59.150 50.000 12.63 12.63 41.09 3.58
237 238 1.202927 ACACCCCCTTGTCAATGACAG 60.203 52.381 16.10 10.35 43.69 3.51
238 239 0.251341 ACCCCCTTGTCAATGACAGC 60.251 55.000 16.10 0.00 43.69 4.40
239 240 1.308069 CCCCCTTGTCAATGACAGCG 61.308 60.000 16.10 11.22 43.69 5.18
240 241 1.308069 CCCCTTGTCAATGACAGCGG 61.308 60.000 16.10 18.50 43.69 5.52
241 242 0.321564 CCCTTGTCAATGACAGCGGA 60.322 55.000 25.41 9.58 43.69 5.54
242 243 0.798776 CCTTGTCAATGACAGCGGAC 59.201 55.000 21.61 0.00 43.69 4.79
243 244 0.798776 CTTGTCAATGACAGCGGACC 59.201 55.000 16.10 0.00 43.69 4.46
244 245 0.396435 TTGTCAATGACAGCGGACCT 59.604 50.000 16.10 0.00 43.69 3.85
245 246 0.037326 TGTCAATGACAGCGGACCTC 60.037 55.000 12.63 0.00 37.67 3.85
246 247 0.037326 GTCAATGACAGCGGACCTCA 60.037 55.000 8.74 0.00 32.09 3.86
247 248 0.904649 TCAATGACAGCGGACCTCAT 59.095 50.000 0.00 0.00 0.00 2.90
248 249 1.012086 CAATGACAGCGGACCTCATG 58.988 55.000 0.00 0.00 0.00 3.07
249 250 0.107508 AATGACAGCGGACCTCATGG 60.108 55.000 0.00 0.00 39.83 3.66
250 251 2.512515 GACAGCGGACCTCATGGC 60.513 66.667 0.00 0.00 36.63 4.40
251 252 3.315142 GACAGCGGACCTCATGGCA 62.315 63.158 0.00 0.00 36.63 4.92
252 253 2.191375 CAGCGGACCTCATGGCAT 59.809 61.111 0.00 0.00 36.63 4.40
253 254 2.184830 CAGCGGACCTCATGGCATG 61.185 63.158 21.42 21.42 36.63 4.06
254 255 3.589881 GCGGACCTCATGGCATGC 61.590 66.667 22.56 9.90 36.63 4.06
255 256 2.191375 CGGACCTCATGGCATGCT 59.809 61.111 22.56 7.20 36.63 3.79
256 257 2.184830 CGGACCTCATGGCATGCTG 61.185 63.158 22.56 16.90 36.63 4.41
257 258 1.826921 GGACCTCATGGCATGCTGG 60.827 63.158 26.52 26.52 36.63 4.85
258 259 2.441532 ACCTCATGGCATGCTGGC 60.442 61.111 27.44 0.95 44.03 4.85
279 280 3.452786 CCTCCTCAGCTTCGCGGA 61.453 66.667 6.13 0.00 0.00 5.54
280 281 2.790791 CCTCCTCAGCTTCGCGGAT 61.791 63.158 6.13 0.00 31.76 4.18
281 282 1.591059 CTCCTCAGCTTCGCGGATG 60.591 63.158 6.13 0.00 31.76 3.51
282 283 2.185350 CCTCAGCTTCGCGGATGT 59.815 61.111 6.13 0.00 31.76 3.06
283 284 1.035385 TCCTCAGCTTCGCGGATGTA 61.035 55.000 6.13 0.00 31.76 2.29
284 285 0.032678 CCTCAGCTTCGCGGATGTAT 59.967 55.000 6.13 0.00 31.76 2.29
285 286 1.269723 CCTCAGCTTCGCGGATGTATA 59.730 52.381 6.13 0.00 31.76 1.47
286 287 2.320367 CTCAGCTTCGCGGATGTATAC 58.680 52.381 6.13 0.00 31.76 1.47
287 288 1.679153 TCAGCTTCGCGGATGTATACA 59.321 47.619 8.27 8.27 0.00 2.29
288 289 2.100087 TCAGCTTCGCGGATGTATACAA 59.900 45.455 10.14 0.00 0.00 2.41
289 290 2.863740 CAGCTTCGCGGATGTATACAAA 59.136 45.455 10.14 0.00 0.00 2.83
290 291 2.864343 AGCTTCGCGGATGTATACAAAC 59.136 45.455 10.14 7.22 0.00 2.93
291 292 2.347292 GCTTCGCGGATGTATACAAACG 60.347 50.000 21.32 21.32 33.95 3.60
292 293 2.565210 TCGCGGATGTATACAAACGT 57.435 45.000 24.23 5.60 33.56 3.99
293 294 2.453080 TCGCGGATGTATACAAACGTC 58.547 47.619 24.23 17.99 35.11 4.34
294 295 2.159407 TCGCGGATGTATACAAACGTCA 60.159 45.455 24.23 13.88 37.16 4.35
295 296 2.792674 CGCGGATGTATACAAACGTCAT 59.207 45.455 24.23 3.99 37.16 3.06
296 297 3.244345 CGCGGATGTATACAAACGTCATT 59.756 43.478 24.23 3.35 37.16 2.57
297 298 4.260051 CGCGGATGTATACAAACGTCATTT 60.260 41.667 24.23 2.72 37.16 2.32
310 311 4.789095 ACGTCATTTGAACCGTATATGC 57.211 40.909 0.00 0.00 0.00 3.14
311 312 4.185394 ACGTCATTTGAACCGTATATGCA 58.815 39.130 0.00 0.00 0.00 3.96
312 313 4.033587 ACGTCATTTGAACCGTATATGCAC 59.966 41.667 0.00 0.00 0.00 4.57
313 314 4.514506 GTCATTTGAACCGTATATGCACG 58.485 43.478 0.00 0.00 41.59 5.34
314 315 4.033587 GTCATTTGAACCGTATATGCACGT 59.966 41.667 0.00 0.00 40.31 4.49
315 316 4.632251 TCATTTGAACCGTATATGCACGTT 59.368 37.500 0.00 0.00 40.31 3.99
316 317 4.587211 TTTGAACCGTATATGCACGTTC 57.413 40.909 11.52 11.52 40.31 3.95
317 318 3.233684 TGAACCGTATATGCACGTTCA 57.766 42.857 15.16 15.16 40.31 3.18
318 319 3.787785 TGAACCGTATATGCACGTTCAT 58.212 40.909 15.16 5.87 40.31 2.57
319 320 4.934515 TGAACCGTATATGCACGTTCATA 58.065 39.130 10.31 10.31 40.31 2.15
320 321 4.741185 TGAACCGTATATGCACGTTCATAC 59.259 41.667 10.12 0.73 40.31 2.39
321 322 3.645884 ACCGTATATGCACGTTCATACC 58.354 45.455 10.12 3.76 40.31 2.73
322 323 3.068448 ACCGTATATGCACGTTCATACCA 59.932 43.478 10.12 0.00 40.31 3.25
323 324 4.052608 CCGTATATGCACGTTCATACCAA 58.947 43.478 10.12 0.00 40.31 3.67
324 325 4.149922 CCGTATATGCACGTTCATACCAAG 59.850 45.833 10.12 4.30 40.31 3.61
325 326 4.743151 CGTATATGCACGTTCATACCAAGT 59.257 41.667 10.12 0.00 37.16 3.16
326 327 5.233476 CGTATATGCACGTTCATACCAAGTT 59.767 40.000 10.12 0.00 37.16 2.66
327 328 6.418523 CGTATATGCACGTTCATACCAAGTTA 59.581 38.462 10.12 0.00 37.16 2.24
328 329 7.043258 CGTATATGCACGTTCATACCAAGTTAA 60.043 37.037 10.12 0.00 37.16 2.01
329 330 7.801716 ATATGCACGTTCATACCAAGTTAAT 57.198 32.000 10.12 0.00 32.36 1.40
330 331 5.289917 TGCACGTTCATACCAAGTTAATG 57.710 39.130 0.00 0.00 0.00 1.90
331 332 4.998033 TGCACGTTCATACCAAGTTAATGA 59.002 37.500 0.00 0.00 0.00 2.57
332 333 5.470437 TGCACGTTCATACCAAGTTAATGAA 59.530 36.000 0.00 4.27 37.30 2.57
339 340 7.681939 TCATACCAAGTTAATGAACCAGTTC 57.318 36.000 3.52 3.52 39.91 3.01
352 353 6.154203 TGAACCAGTTCAATGTATTTTGCA 57.846 33.333 10.71 0.00 45.56 4.08
353 354 6.577103 TGAACCAGTTCAATGTATTTTGCAA 58.423 32.000 10.71 0.00 45.56 4.08
354 355 6.700960 TGAACCAGTTCAATGTATTTTGCAAG 59.299 34.615 10.71 0.00 45.56 4.01
355 356 6.160576 ACCAGTTCAATGTATTTTGCAAGT 57.839 33.333 0.00 0.00 0.00 3.16
356 357 6.581712 ACCAGTTCAATGTATTTTGCAAGTT 58.418 32.000 0.00 0.00 0.00 2.66
357 358 6.701400 ACCAGTTCAATGTATTTTGCAAGTTC 59.299 34.615 0.00 0.00 0.00 3.01
358 359 6.700960 CCAGTTCAATGTATTTTGCAAGTTCA 59.299 34.615 0.00 0.00 0.00 3.18
359 360 7.095940 CCAGTTCAATGTATTTTGCAAGTTCAG 60.096 37.037 0.00 0.00 0.00 3.02
360 361 6.925165 AGTTCAATGTATTTTGCAAGTTCAGG 59.075 34.615 0.00 0.00 0.00 3.86
361 362 5.229423 TCAATGTATTTTGCAAGTTCAGGC 58.771 37.500 0.00 0.00 0.00 4.85
362 363 4.870123 ATGTATTTTGCAAGTTCAGGCA 57.130 36.364 0.00 0.00 38.46 4.75
363 364 3.976169 TGTATTTTGCAAGTTCAGGCAC 58.024 40.909 0.00 0.00 40.23 5.01
364 365 3.636300 TGTATTTTGCAAGTTCAGGCACT 59.364 39.130 0.00 0.00 40.23 4.40
365 366 4.824537 TGTATTTTGCAAGTTCAGGCACTA 59.175 37.500 0.00 0.00 40.23 2.74
366 367 4.935352 ATTTTGCAAGTTCAGGCACTAA 57.065 36.364 0.00 0.00 40.23 2.24
367 368 4.727507 TTTTGCAAGTTCAGGCACTAAA 57.272 36.364 0.00 0.00 40.23 1.85
368 369 3.988379 TTGCAAGTTCAGGCACTAAAG 57.012 42.857 0.00 0.00 40.23 1.85
369 370 2.930950 TGCAAGTTCAGGCACTAAAGT 58.069 42.857 0.00 0.00 36.02 2.66
381 382 3.770263 CACTAAAGTGCACATCCATGG 57.230 47.619 21.04 4.97 39.39 3.66
382 383 2.094675 ACTAAAGTGCACATCCATGGC 58.905 47.619 21.04 0.00 0.00 4.40
383 384 2.093890 CTAAAGTGCACATCCATGGCA 58.906 47.619 21.04 0.00 33.62 4.92
384 385 1.340088 AAAGTGCACATCCATGGCAA 58.660 45.000 21.04 0.00 36.33 4.52
385 386 0.892755 AAGTGCACATCCATGGCAAG 59.107 50.000 21.04 1.25 36.33 4.01
386 387 0.251474 AGTGCACATCCATGGCAAGT 60.251 50.000 21.04 1.97 36.33 3.16
387 388 0.604578 GTGCACATCCATGGCAAGTT 59.395 50.000 13.17 0.00 36.33 2.66
388 389 0.889994 TGCACATCCATGGCAAGTTC 59.110 50.000 6.96 0.26 33.29 3.01
389 390 0.889994 GCACATCCATGGCAAGTTCA 59.110 50.000 6.96 0.00 0.00 3.18
390 391 1.273048 GCACATCCATGGCAAGTTCAA 59.727 47.619 6.96 0.00 0.00 2.69
391 392 2.673043 GCACATCCATGGCAAGTTCAAG 60.673 50.000 6.96 0.00 0.00 3.02
392 393 1.547372 ACATCCATGGCAAGTTCAAGC 59.453 47.619 6.96 0.00 0.00 4.01
393 394 1.546923 CATCCATGGCAAGTTCAAGCA 59.453 47.619 6.96 0.00 0.00 3.91
394 395 1.927487 TCCATGGCAAGTTCAAGCAT 58.073 45.000 6.96 0.00 0.00 3.79
395 396 1.820519 TCCATGGCAAGTTCAAGCATC 59.179 47.619 6.96 0.00 0.00 3.91
396 397 1.546923 CCATGGCAAGTTCAAGCATCA 59.453 47.619 0.00 0.00 0.00 3.07
397 398 2.602878 CATGGCAAGTTCAAGCATCAC 58.397 47.619 0.00 0.00 0.00 3.06
398 399 1.985473 TGGCAAGTTCAAGCATCACT 58.015 45.000 0.00 0.00 0.00 3.41
399 400 1.610038 TGGCAAGTTCAAGCATCACTG 59.390 47.619 0.00 0.00 0.00 3.66
400 401 1.068055 GGCAAGTTCAAGCATCACTGG 60.068 52.381 0.00 0.00 0.00 4.00
401 402 1.610522 GCAAGTTCAAGCATCACTGGT 59.389 47.619 0.00 0.00 33.62 4.00
402 403 2.606308 GCAAGTTCAAGCATCACTGGTG 60.606 50.000 0.00 0.00 32.27 4.17
403 404 2.620115 CAAGTTCAAGCATCACTGGTGT 59.380 45.455 0.53 0.00 32.27 4.16
404 405 3.769739 AGTTCAAGCATCACTGGTGTA 57.230 42.857 0.53 0.00 32.27 2.90
405 406 4.292186 AGTTCAAGCATCACTGGTGTAT 57.708 40.909 0.53 0.00 32.27 2.29
406 407 4.655963 AGTTCAAGCATCACTGGTGTATT 58.344 39.130 0.53 0.00 32.27 1.89
407 408 5.072741 AGTTCAAGCATCACTGGTGTATTT 58.927 37.500 0.53 0.00 32.27 1.40
408 409 6.237901 AGTTCAAGCATCACTGGTGTATTTA 58.762 36.000 0.53 0.00 32.27 1.40
409 410 6.149474 AGTTCAAGCATCACTGGTGTATTTAC 59.851 38.462 0.53 0.00 32.27 2.01
410 411 4.941263 TCAAGCATCACTGGTGTATTTACC 59.059 41.667 0.53 0.00 41.24 2.85
411 412 4.844349 AGCATCACTGGTGTATTTACCT 57.156 40.909 0.53 0.00 41.43 3.08
412 413 4.770795 AGCATCACTGGTGTATTTACCTC 58.229 43.478 0.53 0.00 41.43 3.85
413 414 3.877508 GCATCACTGGTGTATTTACCTCC 59.122 47.826 0.53 0.00 41.43 4.30
414 415 4.625324 GCATCACTGGTGTATTTACCTCCA 60.625 45.833 0.53 0.00 41.43 3.86
415 416 5.684704 CATCACTGGTGTATTTACCTCCAT 58.315 41.667 0.53 0.00 41.43 3.41
416 417 5.353394 TCACTGGTGTATTTACCTCCATC 57.647 43.478 0.53 0.00 41.43 3.51
417 418 5.030147 TCACTGGTGTATTTACCTCCATCT 58.970 41.667 0.53 0.00 41.43 2.90
418 419 6.199376 TCACTGGTGTATTTACCTCCATCTA 58.801 40.000 0.53 0.00 41.43 1.98
476 478 7.970061 TCATTTACAGTATATTATCCGCCGTAC 59.030 37.037 0.00 0.00 0.00 3.67
641 652 2.416972 CGAGGTAGGCAGGAACAGTAAC 60.417 54.545 0.00 0.00 0.00 2.50
824 2324 1.369321 CCGATCTTAGCTCAGGGCC 59.631 63.158 0.00 0.00 43.05 5.80
825 2325 1.006805 CGATCTTAGCTCAGGGCCG 60.007 63.158 0.00 0.00 43.05 6.13
826 2326 1.456196 CGATCTTAGCTCAGGGCCGA 61.456 60.000 0.00 0.00 43.05 5.54
827 2327 0.972883 GATCTTAGCTCAGGGCCGAT 59.027 55.000 0.00 0.00 43.05 4.18
869 2373 2.954611 GGCAACGAAGGAAGCCAC 59.045 61.111 0.00 0.00 46.26 5.01
870 2374 2.556287 GCAACGAAGGAAGCCACG 59.444 61.111 0.00 0.00 0.00 4.94
871 2375 2.556287 CAACGAAGGAAGCCACGC 59.444 61.111 0.00 0.00 0.00 5.34
872 2376 2.110213 AACGAAGGAAGCCACGCA 59.890 55.556 0.00 0.00 0.00 5.24
873 2377 1.961277 AACGAAGGAAGCCACGCAG 60.961 57.895 0.00 0.00 0.00 5.18
1000 2519 1.821759 CCACCGTTTCACCACTGCA 60.822 57.895 0.00 0.00 0.00 4.41
1001 2520 1.172180 CCACCGTTTCACCACTGCAT 61.172 55.000 0.00 0.00 0.00 3.96
1002 2521 0.040157 CACCGTTTCACCACTGCATG 60.040 55.000 0.00 0.00 0.00 4.06
1019 2567 2.056906 ATGCCCCTAGAATCGCCCAC 62.057 60.000 0.00 0.00 0.00 4.61
1020 2568 2.444256 GCCCCTAGAATCGCCCACT 61.444 63.158 0.00 0.00 0.00 4.00
1021 2569 1.749033 CCCCTAGAATCGCCCACTC 59.251 63.158 0.00 0.00 0.00 3.51
1022 2570 1.048724 CCCCTAGAATCGCCCACTCA 61.049 60.000 0.00 0.00 0.00 3.41
1023 2571 0.105039 CCCTAGAATCGCCCACTCAC 59.895 60.000 0.00 0.00 0.00 3.51
1024 2572 0.824109 CCTAGAATCGCCCACTCACA 59.176 55.000 0.00 0.00 0.00 3.58
1376 3487 3.479269 CGACGCCGGCAGAAAGAC 61.479 66.667 28.98 8.99 0.00 3.01
1425 3536 2.125106 GCGGGCTTCCTGAACGAT 60.125 61.111 0.00 0.00 29.82 3.73
1797 3933 1.002087 CTCGGTTCCAACTGCTACCTT 59.998 52.381 0.00 0.00 35.25 3.50
1863 4022 1.403323 CGTGAGTAGCTCAGCTGATCA 59.597 52.381 18.63 14.77 41.46 2.92
1888 4047 3.066760 GGCCGGTAAATTTCTTGAGGATG 59.933 47.826 1.90 0.00 0.00 3.51
1889 4048 3.945285 GCCGGTAAATTTCTTGAGGATGA 59.055 43.478 1.90 0.00 0.00 2.92
1890 4049 4.580580 GCCGGTAAATTTCTTGAGGATGAT 59.419 41.667 1.90 0.00 0.00 2.45
1891 4050 5.278022 GCCGGTAAATTTCTTGAGGATGATC 60.278 44.000 1.90 0.00 0.00 2.92
2174 4562 1.342796 GAGAAGTTCCGCGGACGAAC 61.343 60.000 31.19 23.98 43.93 3.95
2181 4569 4.351938 CGCGGACGAACACCCTGA 62.352 66.667 0.00 0.00 43.93 3.86
2229 4617 5.509332 GGCTAGGGTAGTGTTATGCTCTTAC 60.509 48.000 0.00 0.00 0.00 2.34
2272 4660 3.931907 TTGGATGCTTGGTAGTGCTAT 57.068 42.857 0.00 0.00 0.00 2.97
2314 4702 6.294955 CGATCTCCCACTAATCTTCATCATGA 60.295 42.308 0.00 0.00 0.00 3.07
2323 4711 8.127327 CACTAATCTTCATCATGATTGTGGAAC 58.873 37.037 5.16 0.00 35.01 3.62
2352 4740 1.079875 TCGCGCGGTCTTATGGAAAC 61.080 55.000 31.69 0.00 0.00 2.78
2355 4743 1.734163 CGCGGTCTTATGGAAACCTT 58.266 50.000 0.00 0.00 0.00 3.50
2460 5052 3.134081 TCCTCCATAATTCTGTTCCCGTC 59.866 47.826 0.00 0.00 0.00 4.79
2495 5090 2.301346 TCTACTCGATCAGCATGCAGA 58.699 47.619 21.98 18.74 34.76 4.26
2500 5095 2.207590 TCGATCAGCATGCAGATGTTC 58.792 47.619 27.93 14.86 34.56 3.18
2514 5610 7.765695 TGCAGATGTTCCTTTCTAGAAAAAT 57.234 32.000 18.25 7.75 0.00 1.82
2550 5649 2.222007 TGCTTGCATGCGTTCTTTTT 57.778 40.000 18.54 0.00 35.36 1.94
2608 5976 4.220163 TGCAATCAGAAAATATGTGCCACA 59.780 37.500 0.00 0.00 0.00 4.17
2630 5998 3.210857 GGCACTCAGCGTGTCTTTA 57.789 52.632 0.00 0.00 44.79 1.85
2636 6004 5.334569 GGCACTCAGCGTGTCTTTATTTTTA 60.335 40.000 0.00 0.00 44.79 1.52
2637 6005 6.314784 GCACTCAGCGTGTCTTTATTTTTAT 58.685 36.000 0.00 0.00 45.57 1.40
2638 6006 6.801862 GCACTCAGCGTGTCTTTATTTTTATT 59.198 34.615 0.00 0.00 45.57 1.40
2639 6007 7.326063 GCACTCAGCGTGTCTTTATTTTTATTT 59.674 33.333 0.00 0.00 45.57 1.40
2640 6008 9.180678 CACTCAGCGTGTCTTTATTTTTATTTT 57.819 29.630 0.00 0.00 38.84 1.82
2641 6009 9.744468 ACTCAGCGTGTCTTTATTTTTATTTTT 57.256 25.926 0.00 0.00 0.00 1.94
2735 6203 1.626321 TGTGTGGGTCCATCGTGTAAT 59.374 47.619 0.00 0.00 0.00 1.89
2761 6235 5.250313 ACCAATTCAAATGCTAAAATGGGGA 59.750 36.000 0.00 0.00 0.00 4.81
2888 6362 9.086336 GAGAAATACTCTCTTCTTCATTCACAG 57.914 37.037 0.00 0.00 46.32 3.66
2896 6370 9.695526 CTCTCTTCTTCATTCACAGATATAAGG 57.304 37.037 0.00 0.00 0.00 2.69
2906 6380 9.823647 CATTCACAGATATAAGGTGTTCTAACT 57.176 33.333 0.00 0.00 34.27 2.24
3035 6509 4.021894 GTGAATAGAGGCGGTATCTCACAT 60.022 45.833 13.23 0.00 33.92 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.962373 CGACAACTTCACATTTGCTGATATTTA 59.038 33.333 0.00 0.00 0.00 1.40
18 19 6.803320 CGACAACTTCACATTTGCTGATATTT 59.197 34.615 0.00 0.00 0.00 1.40
19 20 6.149308 TCGACAACTTCACATTTGCTGATATT 59.851 34.615 0.00 0.00 0.00 1.28
20 21 5.643348 TCGACAACTTCACATTTGCTGATAT 59.357 36.000 0.00 0.00 0.00 1.63
21 22 4.994217 TCGACAACTTCACATTTGCTGATA 59.006 37.500 0.00 0.00 0.00 2.15
22 23 3.814842 TCGACAACTTCACATTTGCTGAT 59.185 39.130 0.00 0.00 0.00 2.90
23 24 3.202097 TCGACAACTTCACATTTGCTGA 58.798 40.909 0.00 0.00 0.00 4.26
24 25 3.002656 ACTCGACAACTTCACATTTGCTG 59.997 43.478 0.00 0.00 0.00 4.41
25 26 3.002656 CACTCGACAACTTCACATTTGCT 59.997 43.478 0.00 0.00 0.00 3.91
26 27 3.291585 CACTCGACAACTTCACATTTGC 58.708 45.455 0.00 0.00 0.00 3.68
27 28 3.312421 ACCACTCGACAACTTCACATTTG 59.688 43.478 0.00 0.00 0.00 2.32
28 29 3.541632 ACCACTCGACAACTTCACATTT 58.458 40.909 0.00 0.00 0.00 2.32
29 30 3.194005 ACCACTCGACAACTTCACATT 57.806 42.857 0.00 0.00 0.00 2.71
30 31 2.910688 ACCACTCGACAACTTCACAT 57.089 45.000 0.00 0.00 0.00 3.21
31 32 2.684001 AACCACTCGACAACTTCACA 57.316 45.000 0.00 0.00 0.00 3.58
32 33 2.475487 GCTAACCACTCGACAACTTCAC 59.525 50.000 0.00 0.00 0.00 3.18
33 34 2.547218 GGCTAACCACTCGACAACTTCA 60.547 50.000 0.00 0.00 35.26 3.02
34 35 2.067013 GGCTAACCACTCGACAACTTC 58.933 52.381 0.00 0.00 35.26 3.01
35 36 1.604693 CGGCTAACCACTCGACAACTT 60.605 52.381 0.00 0.00 34.57 2.66
36 37 0.038526 CGGCTAACCACTCGACAACT 60.039 55.000 0.00 0.00 34.57 3.16
37 38 1.623973 GCGGCTAACCACTCGACAAC 61.624 60.000 0.00 0.00 34.57 3.32
38 39 1.373748 GCGGCTAACCACTCGACAA 60.374 57.895 0.00 0.00 34.57 3.18
39 40 1.884075 ATGCGGCTAACCACTCGACA 61.884 55.000 0.00 0.00 34.57 4.35
40 41 1.153628 ATGCGGCTAACCACTCGAC 60.154 57.895 0.00 0.00 34.57 4.20
41 42 1.153647 CATGCGGCTAACCACTCGA 60.154 57.895 0.00 0.00 34.57 4.04
42 43 2.813179 GCATGCGGCTAACCACTCG 61.813 63.158 0.00 0.00 40.25 4.18
43 44 2.813179 CGCATGCGGCTAACCACTC 61.813 63.158 31.99 0.00 41.67 3.51
44 45 2.819595 CGCATGCGGCTAACCACT 60.820 61.111 31.99 0.00 41.67 4.00
45 46 4.536687 GCGCATGCGGCTAACCAC 62.537 66.667 38.22 17.45 41.67 4.16
55 56 1.425428 GTACCACTCAAGCGCATGC 59.575 57.895 11.47 7.91 43.24 4.06
56 57 1.014044 ACGTACCACTCAAGCGCATG 61.014 55.000 11.47 8.69 0.00 4.06
57 58 0.736325 GACGTACCACTCAAGCGCAT 60.736 55.000 11.47 0.00 0.00 4.73
58 59 1.372499 GACGTACCACTCAAGCGCA 60.372 57.895 11.47 0.00 0.00 6.09
59 60 2.434134 CGACGTACCACTCAAGCGC 61.434 63.158 0.00 0.00 0.00 5.92
60 61 0.662374 AACGACGTACCACTCAAGCG 60.662 55.000 0.00 0.00 0.00 4.68
61 62 0.782384 CAACGACGTACCACTCAAGC 59.218 55.000 0.00 0.00 0.00 4.01
62 63 1.269413 ACCAACGACGTACCACTCAAG 60.269 52.381 0.00 0.00 0.00 3.02
63 64 0.746063 ACCAACGACGTACCACTCAA 59.254 50.000 0.00 0.00 0.00 3.02
64 65 0.746063 AACCAACGACGTACCACTCA 59.254 50.000 0.00 0.00 0.00 3.41
65 66 1.412387 GAACCAACGACGTACCACTC 58.588 55.000 0.00 0.00 0.00 3.51
66 67 0.318107 CGAACCAACGACGTACCACT 60.318 55.000 0.00 0.00 35.09 4.00
67 68 0.317770 TCGAACCAACGACGTACCAC 60.318 55.000 0.00 0.00 37.37 4.16
68 69 0.597568 ATCGAACCAACGACGTACCA 59.402 50.000 0.00 0.00 44.84 3.25
69 70 1.262882 GATCGAACCAACGACGTACC 58.737 55.000 0.00 0.00 44.84 3.34
70 71 1.262882 GGATCGAACCAACGACGTAC 58.737 55.000 6.88 0.00 44.84 3.67
71 72 0.880441 TGGATCGAACCAACGACGTA 59.120 50.000 12.63 0.00 44.84 3.57
72 73 0.388134 CTGGATCGAACCAACGACGT 60.388 55.000 15.90 0.00 44.84 4.34
73 74 1.683790 GCTGGATCGAACCAACGACG 61.684 60.000 15.90 4.79 44.84 5.12
74 75 0.669318 TGCTGGATCGAACCAACGAC 60.669 55.000 15.90 6.35 44.84 4.34
75 76 0.669318 GTGCTGGATCGAACCAACGA 60.669 55.000 15.90 0.00 46.04 3.85
76 77 0.948623 TGTGCTGGATCGAACCAACG 60.949 55.000 15.90 6.25 39.59 4.10
77 78 0.517316 GTGTGCTGGATCGAACCAAC 59.483 55.000 15.90 11.89 39.59 3.77
78 79 0.605319 GGTGTGCTGGATCGAACCAA 60.605 55.000 15.90 0.00 39.59 3.67
79 80 1.003839 GGTGTGCTGGATCGAACCA 60.004 57.895 14.34 14.34 38.33 3.67
80 81 1.003839 TGGTGTGCTGGATCGAACC 60.004 57.895 4.46 4.46 0.00 3.62
81 82 0.320771 ACTGGTGTGCTGGATCGAAC 60.321 55.000 0.00 0.00 0.00 3.95
82 83 0.396435 AACTGGTGTGCTGGATCGAA 59.604 50.000 0.00 0.00 0.00 3.71
83 84 0.396435 AAACTGGTGTGCTGGATCGA 59.604 50.000 0.00 0.00 0.00 3.59
84 85 1.238439 AAAACTGGTGTGCTGGATCG 58.762 50.000 0.00 0.00 0.00 3.69
85 86 5.391312 AATTAAAACTGGTGTGCTGGATC 57.609 39.130 0.00 0.00 0.00 3.36
86 87 5.540911 CAAATTAAAACTGGTGTGCTGGAT 58.459 37.500 0.00 0.00 0.00 3.41
87 88 4.739137 GCAAATTAAAACTGGTGTGCTGGA 60.739 41.667 0.00 0.00 0.00 3.86
88 89 3.494251 GCAAATTAAAACTGGTGTGCTGG 59.506 43.478 0.00 0.00 0.00 4.85
89 90 4.118410 TGCAAATTAAAACTGGTGTGCTG 58.882 39.130 0.00 0.00 0.00 4.41
90 91 4.399004 TGCAAATTAAAACTGGTGTGCT 57.601 36.364 0.00 0.00 0.00 4.40
91 92 4.990426 AGATGCAAATTAAAACTGGTGTGC 59.010 37.500 0.00 0.00 0.00 4.57
92 93 8.761575 ATAAGATGCAAATTAAAACTGGTGTG 57.238 30.769 0.00 0.00 0.00 3.82
137 138 9.086336 CATGGCGAAACTGACAAATTATAAAAT 57.914 29.630 0.00 0.00 0.00 1.82
138 139 8.300286 TCATGGCGAAACTGACAAATTATAAAA 58.700 29.630 0.00 0.00 0.00 1.52
139 140 7.821652 TCATGGCGAAACTGACAAATTATAAA 58.178 30.769 0.00 0.00 0.00 1.40
140 141 7.384439 TCATGGCGAAACTGACAAATTATAA 57.616 32.000 0.00 0.00 0.00 0.98
141 142 6.993786 TCATGGCGAAACTGACAAATTATA 57.006 33.333 0.00 0.00 0.00 0.98
142 143 5.895636 TCATGGCGAAACTGACAAATTAT 57.104 34.783 0.00 0.00 0.00 1.28
143 144 5.392919 CCATCATGGCGAAACTGACAAATTA 60.393 40.000 0.00 0.00 0.00 1.40
144 145 4.487948 CATCATGGCGAAACTGACAAATT 58.512 39.130 0.00 0.00 0.00 1.82
145 146 3.119388 CCATCATGGCGAAACTGACAAAT 60.119 43.478 0.00 0.00 0.00 2.32
146 147 2.228582 CCATCATGGCGAAACTGACAAA 59.771 45.455 0.00 0.00 0.00 2.83
147 148 1.811965 CCATCATGGCGAAACTGACAA 59.188 47.619 0.00 0.00 0.00 3.18
148 149 1.452110 CCATCATGGCGAAACTGACA 58.548 50.000 0.00 0.00 0.00 3.58
159 160 6.713762 TTTCTTACAATAAGGCCATCATGG 57.286 37.500 5.01 0.00 41.55 3.66
165 166 8.700973 GGGAATTATTTTCTTACAATAAGGCCA 58.299 33.333 5.01 0.00 31.23 5.36
166 167 7.865889 CGGGAATTATTTTCTTACAATAAGGCC 59.134 37.037 0.00 0.00 31.23 5.19
167 168 8.626526 TCGGGAATTATTTTCTTACAATAAGGC 58.373 33.333 0.00 0.00 31.23 4.35
170 171 9.689501 ACCTCGGGAATTATTTTCTTACAATAA 57.310 29.630 0.00 0.00 32.05 1.40
171 172 9.689501 AACCTCGGGAATTATTTTCTTACAATA 57.310 29.630 0.00 0.00 0.00 1.90
172 173 8.589701 AACCTCGGGAATTATTTTCTTACAAT 57.410 30.769 0.00 0.00 0.00 2.71
173 174 8.411991 AAACCTCGGGAATTATTTTCTTACAA 57.588 30.769 0.00 0.00 0.00 2.41
174 175 7.121611 GGAAACCTCGGGAATTATTTTCTTACA 59.878 37.037 0.00 0.00 0.00 2.41
175 176 7.478322 GGAAACCTCGGGAATTATTTTCTTAC 58.522 38.462 0.00 0.00 0.00 2.34
176 177 7.634671 GGAAACCTCGGGAATTATTTTCTTA 57.365 36.000 0.00 0.00 0.00 2.10
177 178 6.525578 GGAAACCTCGGGAATTATTTTCTT 57.474 37.500 0.00 0.00 0.00 2.52
206 207 0.790339 AGGGGGTGTGGCCTATTTTT 59.210 50.000 3.32 0.00 37.43 1.94
207 208 0.790339 AAGGGGGTGTGGCCTATTTT 59.210 50.000 3.32 0.00 37.43 1.82
208 209 0.041090 CAAGGGGGTGTGGCCTATTT 59.959 55.000 3.32 0.00 37.43 1.40
209 210 1.146544 ACAAGGGGGTGTGGCCTATT 61.147 55.000 3.32 0.00 37.43 1.73
210 211 1.543896 ACAAGGGGGTGTGGCCTAT 60.544 57.895 3.32 0.00 37.43 2.57
211 212 2.121689 ACAAGGGGGTGTGGCCTA 60.122 61.111 3.32 0.00 37.43 3.93
212 213 3.580319 GACAAGGGGGTGTGGCCT 61.580 66.667 3.32 0.00 37.43 5.19
213 214 2.730129 ATTGACAAGGGGGTGTGGCC 62.730 60.000 0.00 0.00 0.00 5.36
214 215 1.228862 ATTGACAAGGGGGTGTGGC 60.229 57.895 0.00 0.00 0.00 5.01
215 216 0.112218 TCATTGACAAGGGGGTGTGG 59.888 55.000 0.00 0.00 0.00 4.17
216 217 1.247567 GTCATTGACAAGGGGGTGTG 58.752 55.000 11.93 0.00 32.09 3.82
217 218 0.850100 TGTCATTGACAAGGGGGTGT 59.150 50.000 16.95 0.00 39.78 4.16
218 219 1.538047 CTGTCATTGACAAGGGGGTG 58.462 55.000 19.44 3.59 42.26 4.61
219 220 0.251341 GCTGTCATTGACAAGGGGGT 60.251 55.000 19.44 0.00 42.26 4.95
220 221 1.308069 CGCTGTCATTGACAAGGGGG 61.308 60.000 19.44 12.64 42.26 5.40
221 222 1.308069 CCGCTGTCATTGACAAGGGG 61.308 60.000 24.09 24.09 42.26 4.79
222 223 0.321564 TCCGCTGTCATTGACAAGGG 60.322 55.000 27.10 24.39 42.26 3.95
223 224 0.798776 GTCCGCTGTCATTGACAAGG 59.201 55.000 24.24 24.24 42.26 3.61
224 225 0.798776 GGTCCGCTGTCATTGACAAG 59.201 55.000 19.44 15.51 42.26 3.16
225 226 0.396435 AGGTCCGCTGTCATTGACAA 59.604 50.000 19.44 3.04 42.26 3.18
226 227 0.037326 GAGGTCCGCTGTCATTGACA 60.037 55.000 18.08 18.08 40.50 3.58
227 228 0.037326 TGAGGTCCGCTGTCATTGAC 60.037 55.000 9.93 9.93 0.00 3.18
228 229 0.904649 ATGAGGTCCGCTGTCATTGA 59.095 50.000 0.00 0.00 0.00 2.57
229 230 1.012086 CATGAGGTCCGCTGTCATTG 58.988 55.000 0.00 0.00 0.00 2.82
230 231 0.107508 CCATGAGGTCCGCTGTCATT 60.108 55.000 0.00 0.00 0.00 2.57
231 232 1.524002 CCATGAGGTCCGCTGTCAT 59.476 57.895 0.00 0.00 0.00 3.06
232 233 2.981302 CCATGAGGTCCGCTGTCA 59.019 61.111 0.00 0.00 0.00 3.58
233 234 2.512515 GCCATGAGGTCCGCTGTC 60.513 66.667 0.00 0.00 37.19 3.51
234 235 2.673200 ATGCCATGAGGTCCGCTGT 61.673 57.895 0.00 0.00 37.19 4.40
235 236 2.184830 CATGCCATGAGGTCCGCTG 61.185 63.158 0.00 0.00 37.19 5.18
236 237 2.191375 CATGCCATGAGGTCCGCT 59.809 61.111 0.00 0.00 37.19 5.52
237 238 3.589881 GCATGCCATGAGGTCCGC 61.590 66.667 9.33 0.00 37.19 5.54
238 239 2.184830 CAGCATGCCATGAGGTCCG 61.185 63.158 15.66 0.00 37.19 4.79
239 240 1.826921 CCAGCATGCCATGAGGTCC 60.827 63.158 15.66 0.00 37.19 4.46
240 241 2.487532 GCCAGCATGCCATGAGGTC 61.488 63.158 15.66 2.65 37.19 3.85
241 242 2.441532 GCCAGCATGCCATGAGGT 60.442 61.111 15.66 0.00 37.19 3.85
242 243 3.592814 CGCCAGCATGCCATGAGG 61.593 66.667 15.66 10.39 38.23 3.86
243 244 4.266070 GCGCCAGCATGCCATGAG 62.266 66.667 15.66 6.07 44.35 2.90
271 272 2.855963 ACGTTTGTATACATCCGCGAAG 59.144 45.455 8.23 0.00 0.00 3.79
272 273 2.853594 GACGTTTGTATACATCCGCGAA 59.146 45.455 8.23 0.00 0.00 4.70
273 274 2.159407 TGACGTTTGTATACATCCGCGA 60.159 45.455 8.23 0.00 0.00 5.87
274 275 2.186891 TGACGTTTGTATACATCCGCG 58.813 47.619 18.99 16.14 0.00 6.46
275 276 4.789095 AATGACGTTTGTATACATCCGC 57.211 40.909 18.99 13.97 0.00 5.54
276 277 6.339194 TCAAATGACGTTTGTATACATCCG 57.661 37.500 17.54 18.00 45.87 4.18
277 278 6.964934 GGTTCAAATGACGTTTGTATACATCC 59.035 38.462 17.54 0.00 45.87 3.51
278 279 6.681178 CGGTTCAAATGACGTTTGTATACATC 59.319 38.462 17.54 1.76 45.87 3.06
279 280 6.148150 ACGGTTCAAATGACGTTTGTATACAT 59.852 34.615 17.54 0.00 45.87 2.29
280 281 5.466058 ACGGTTCAAATGACGTTTGTATACA 59.534 36.000 17.54 0.08 45.87 2.29
281 282 5.919196 ACGGTTCAAATGACGTTTGTATAC 58.081 37.500 17.54 13.84 45.87 1.47
282 283 7.830940 ATACGGTTCAAATGACGTTTGTATA 57.169 32.000 17.54 6.91 45.87 1.47
283 284 6.730960 ATACGGTTCAAATGACGTTTGTAT 57.269 33.333 17.54 7.07 45.87 2.29
284 285 7.674472 GCATATACGGTTCAAATGACGTTTGTA 60.674 37.037 17.54 7.56 45.87 2.41
285 286 6.539324 CATATACGGTTCAAATGACGTTTGT 58.461 36.000 17.54 3.37 45.87 2.83
286 287 5.451023 GCATATACGGTTCAAATGACGTTTG 59.549 40.000 13.05 13.05 46.86 2.93
287 288 5.122554 TGCATATACGGTTCAAATGACGTTT 59.877 36.000 4.70 1.05 40.38 3.60
288 289 4.632251 TGCATATACGGTTCAAATGACGTT 59.368 37.500 4.70 0.00 40.38 3.99
289 290 4.033587 GTGCATATACGGTTCAAATGACGT 59.966 41.667 0.00 0.00 42.71 4.34
290 291 4.514506 GTGCATATACGGTTCAAATGACG 58.485 43.478 0.00 0.00 0.00 4.35
291 292 4.514506 CGTGCATATACGGTTCAAATGAC 58.485 43.478 0.00 0.00 40.22 3.06
292 293 4.632251 AACGTGCATATACGGTTCAAATGA 59.368 37.500 3.27 0.00 42.06 2.57
293 294 4.904116 AACGTGCATATACGGTTCAAATG 58.096 39.130 3.27 0.00 42.06 2.32
294 295 4.632251 TGAACGTGCATATACGGTTCAAAT 59.368 37.500 0.00 0.00 45.22 2.32
295 296 3.995048 TGAACGTGCATATACGGTTCAAA 59.005 39.130 0.00 0.00 45.22 2.69
296 297 3.586892 TGAACGTGCATATACGGTTCAA 58.413 40.909 0.00 0.00 45.22 2.69
297 298 3.233684 TGAACGTGCATATACGGTTCA 57.766 42.857 0.00 7.81 45.22 3.18
298 299 4.149396 GGTATGAACGTGCATATACGGTTC 59.851 45.833 19.19 4.68 45.22 3.62
299 300 4.053295 GGTATGAACGTGCATATACGGTT 58.947 43.478 19.19 0.00 45.22 4.44
303 304 6.598753 AACTTGGTATGAACGTGCATATAC 57.401 37.500 19.19 15.08 33.67 1.47
304 305 8.769891 CATTAACTTGGTATGAACGTGCATATA 58.230 33.333 19.19 9.13 33.67 0.86
305 306 7.497579 TCATTAACTTGGTATGAACGTGCATAT 59.502 33.333 19.19 5.02 33.67 1.78
306 307 6.819146 TCATTAACTTGGTATGAACGTGCATA 59.181 34.615 12.46 12.46 0.00 3.14
307 308 5.645929 TCATTAACTTGGTATGAACGTGCAT 59.354 36.000 14.84 14.84 0.00 3.96
308 309 4.998033 TCATTAACTTGGTATGAACGTGCA 59.002 37.500 0.00 0.00 0.00 4.57
309 310 5.539582 TCATTAACTTGGTATGAACGTGC 57.460 39.130 0.00 0.00 0.00 5.34
314 315 7.721842 TGAACTGGTTCATTAACTTGGTATGAA 59.278 33.333 11.53 0.00 43.90 2.57
315 316 7.227873 TGAACTGGTTCATTAACTTGGTATGA 58.772 34.615 11.53 0.00 43.90 2.15
316 317 7.447374 TGAACTGGTTCATTAACTTGGTATG 57.553 36.000 11.53 0.00 43.90 2.39
329 330 6.154203 TGCAAAATACATTGAACTGGTTCA 57.846 33.333 11.53 11.53 46.72 3.18
330 331 6.701400 ACTTGCAAAATACATTGAACTGGTTC 59.299 34.615 0.00 6.53 39.91 3.62
331 332 6.581712 ACTTGCAAAATACATTGAACTGGTT 58.418 32.000 0.00 0.00 31.84 3.67
332 333 6.160576 ACTTGCAAAATACATTGAACTGGT 57.839 33.333 0.00 0.00 31.84 4.00
333 334 6.700960 TGAACTTGCAAAATACATTGAACTGG 59.299 34.615 0.00 0.00 31.84 4.00
334 335 7.095940 CCTGAACTTGCAAAATACATTGAACTG 60.096 37.037 0.00 0.00 31.84 3.16
335 336 6.925165 CCTGAACTTGCAAAATACATTGAACT 59.075 34.615 0.00 0.00 31.84 3.01
336 337 6.346838 GCCTGAACTTGCAAAATACATTGAAC 60.347 38.462 0.00 0.00 31.84 3.18
337 338 5.695816 GCCTGAACTTGCAAAATACATTGAA 59.304 36.000 0.00 0.00 31.84 2.69
338 339 5.221402 TGCCTGAACTTGCAAAATACATTGA 60.221 36.000 0.00 0.00 33.87 2.57
339 340 4.989797 TGCCTGAACTTGCAAAATACATTG 59.010 37.500 0.00 0.00 33.87 2.82
340 341 4.990426 GTGCCTGAACTTGCAAAATACATT 59.010 37.500 0.00 0.00 39.57 2.71
341 342 4.281688 AGTGCCTGAACTTGCAAAATACAT 59.718 37.500 0.00 0.00 39.57 2.29
342 343 3.636300 AGTGCCTGAACTTGCAAAATACA 59.364 39.130 0.00 0.00 39.57 2.29
343 344 4.243007 AGTGCCTGAACTTGCAAAATAC 57.757 40.909 0.00 0.00 39.57 1.89
344 345 6.040391 ACTTTAGTGCCTGAACTTGCAAAATA 59.960 34.615 0.00 0.00 39.57 1.40
345 346 4.935352 TTAGTGCCTGAACTTGCAAAAT 57.065 36.364 0.00 0.00 39.57 1.82
346 347 4.159506 ACTTTAGTGCCTGAACTTGCAAAA 59.840 37.500 0.00 0.00 39.57 2.44
347 348 3.699038 ACTTTAGTGCCTGAACTTGCAAA 59.301 39.130 0.00 0.00 39.57 3.68
348 349 3.066621 CACTTTAGTGCCTGAACTTGCAA 59.933 43.478 0.00 0.00 39.57 4.08
349 350 2.618241 CACTTTAGTGCCTGAACTTGCA 59.382 45.455 0.00 0.00 39.39 4.08
350 351 3.273919 CACTTTAGTGCCTGAACTTGC 57.726 47.619 0.00 0.00 39.39 4.01
362 363 2.094675 GCCATGGATGTGCACTTTAGT 58.905 47.619 18.40 0.00 0.00 2.24
363 364 2.093890 TGCCATGGATGTGCACTTTAG 58.906 47.619 18.40 3.17 31.96 1.85
364 365 2.212812 TGCCATGGATGTGCACTTTA 57.787 45.000 18.40 5.79 31.96 1.85
365 366 1.274167 CTTGCCATGGATGTGCACTTT 59.726 47.619 18.40 5.40 35.02 2.66
366 367 0.892755 CTTGCCATGGATGTGCACTT 59.107 50.000 18.40 12.28 35.02 3.16
367 368 0.251474 ACTTGCCATGGATGTGCACT 60.251 50.000 18.40 3.19 35.02 4.40
368 369 0.604578 AACTTGCCATGGATGTGCAC 59.395 50.000 18.40 10.75 35.02 4.57
369 370 0.889994 GAACTTGCCATGGATGTGCA 59.110 50.000 18.40 2.03 34.00 4.57
370 371 0.889994 TGAACTTGCCATGGATGTGC 59.110 50.000 18.40 9.51 0.00 4.57
371 372 2.673043 GCTTGAACTTGCCATGGATGTG 60.673 50.000 18.40 4.37 0.00 3.21
372 373 1.547372 GCTTGAACTTGCCATGGATGT 59.453 47.619 18.40 7.44 0.00 3.06
373 374 1.546923 TGCTTGAACTTGCCATGGATG 59.453 47.619 18.40 6.73 0.00 3.51
374 375 1.927487 TGCTTGAACTTGCCATGGAT 58.073 45.000 18.40 0.00 0.00 3.41
375 376 1.820519 GATGCTTGAACTTGCCATGGA 59.179 47.619 18.40 0.00 0.00 3.41
376 377 1.546923 TGATGCTTGAACTTGCCATGG 59.453 47.619 7.63 7.63 0.00 3.66
377 378 2.230508 AGTGATGCTTGAACTTGCCATG 59.769 45.455 0.00 0.00 0.00 3.66
378 379 2.230508 CAGTGATGCTTGAACTTGCCAT 59.769 45.455 0.00 0.00 0.00 4.40
379 380 1.610038 CAGTGATGCTTGAACTTGCCA 59.390 47.619 0.00 0.00 0.00 4.92
380 381 1.068055 CCAGTGATGCTTGAACTTGCC 60.068 52.381 0.00 0.00 0.00 4.52
381 382 1.610522 ACCAGTGATGCTTGAACTTGC 59.389 47.619 0.00 0.00 0.00 4.01
382 383 2.620115 ACACCAGTGATGCTTGAACTTG 59.380 45.455 4.48 0.00 0.00 3.16
383 384 2.936202 ACACCAGTGATGCTTGAACTT 58.064 42.857 4.48 0.00 0.00 2.66
384 385 2.645838 ACACCAGTGATGCTTGAACT 57.354 45.000 4.48 0.00 0.00 3.01
385 386 5.376854 AAATACACCAGTGATGCTTGAAC 57.623 39.130 4.48 0.00 0.00 3.18
386 387 5.414454 GGTAAATACACCAGTGATGCTTGAA 59.586 40.000 4.48 0.00 38.55 2.69
387 388 4.941263 GGTAAATACACCAGTGATGCTTGA 59.059 41.667 4.48 0.00 38.55 3.02
388 389 4.943705 AGGTAAATACACCAGTGATGCTTG 59.056 41.667 4.48 0.00 41.40 4.01
389 390 5.179452 AGGTAAATACACCAGTGATGCTT 57.821 39.130 4.48 0.00 41.40 3.91
390 391 4.384208 GGAGGTAAATACACCAGTGATGCT 60.384 45.833 4.48 0.00 41.40 3.79
391 392 3.877508 GGAGGTAAATACACCAGTGATGC 59.122 47.826 4.48 0.00 41.40 3.91
392 393 5.097742 TGGAGGTAAATACACCAGTGATG 57.902 43.478 4.48 0.00 41.40 3.07
393 394 5.667626 AGATGGAGGTAAATACACCAGTGAT 59.332 40.000 4.48 0.00 41.40 3.06
394 395 5.030147 AGATGGAGGTAAATACACCAGTGA 58.970 41.667 4.48 0.00 41.40 3.41
395 396 5.359194 AGATGGAGGTAAATACACCAGTG 57.641 43.478 11.98 0.00 41.40 3.66
396 397 6.203072 ACTAGATGGAGGTAAATACACCAGT 58.797 40.000 0.00 6.79 41.40 4.00
397 398 6.732896 ACTAGATGGAGGTAAATACACCAG 57.267 41.667 0.00 4.42 41.40 4.00
398 399 6.670464 TCAACTAGATGGAGGTAAATACACCA 59.330 38.462 0.00 9.82 41.40 4.17
399 400 7.120923 TCAACTAGATGGAGGTAAATACACC 57.879 40.000 0.00 0.00 39.02 4.16
414 415 9.606631 CTAGTTTAAAGGAAGCATCAACTAGAT 57.393 33.333 15.63 0.00 42.29 1.98
415 416 8.812972 TCTAGTTTAAAGGAAGCATCAACTAGA 58.187 33.333 17.81 17.81 44.40 2.43
416 417 9.606631 ATCTAGTTTAAAGGAAGCATCAACTAG 57.393 33.333 14.98 14.98 41.59 2.57
417 418 9.383519 CATCTAGTTTAAAGGAAGCATCAACTA 57.616 33.333 0.00 0.00 0.00 2.24
418 419 8.103305 TCATCTAGTTTAAAGGAAGCATCAACT 58.897 33.333 0.00 0.00 0.00 3.16
961 2476 0.989212 AGGAGGAGCCGAGGAGAGTA 60.989 60.000 0.00 0.00 43.43 2.59
987 2506 1.290009 GGGCATGCAGTGGTGAAAC 59.710 57.895 21.36 0.00 0.00 2.78
988 2507 1.907807 GGGGCATGCAGTGGTGAAA 60.908 57.895 21.36 0.00 0.00 2.69
1000 2519 1.770110 TGGGCGATTCTAGGGGCAT 60.770 57.895 0.00 0.00 0.00 4.40
1001 2520 2.366301 TGGGCGATTCTAGGGGCA 60.366 61.111 0.00 0.00 0.00 5.36
1002 2521 2.111251 GTGGGCGATTCTAGGGGC 59.889 66.667 0.00 0.00 0.00 5.80
1019 2567 1.357258 GAGCGCCATGTGAGTGTGAG 61.357 60.000 2.29 0.00 0.00 3.51
1020 2568 1.374631 GAGCGCCATGTGAGTGTGA 60.375 57.895 2.29 0.00 0.00 3.58
1021 2569 1.357258 GAGAGCGCCATGTGAGTGTG 61.357 60.000 2.29 0.00 0.00 3.82
1022 2570 1.079543 GAGAGCGCCATGTGAGTGT 60.080 57.895 2.29 0.00 0.00 3.55
1023 2571 1.812922 GGAGAGCGCCATGTGAGTG 60.813 63.158 2.29 0.00 0.00 3.51
1024 2572 2.581354 GGAGAGCGCCATGTGAGT 59.419 61.111 2.29 0.00 0.00 3.41
1425 3536 1.002134 GTAGCCCAGAAAGCAGCCA 60.002 57.895 0.00 0.00 0.00 4.75
1888 4047 1.474478 TCAGAGACAGCCAGAACGATC 59.526 52.381 0.00 0.00 0.00 3.69
1889 4048 1.203523 GTCAGAGACAGCCAGAACGAT 59.796 52.381 0.00 0.00 32.09 3.73
1890 4049 0.598562 GTCAGAGACAGCCAGAACGA 59.401 55.000 0.00 0.00 32.09 3.85
1891 4050 0.600557 AGTCAGAGACAGCCAGAACG 59.399 55.000 0.00 0.00 34.60 3.95
2026 4406 2.446848 CCCCATCCTCATGCCGACT 61.447 63.158 0.00 0.00 0.00 4.18
2181 4569 2.106566 CTAGTCATGTGCTCCTGACCT 58.893 52.381 17.15 9.62 42.18 3.85
2229 4617 8.074370 CCAAATGCATACAACAGAATAGATCAG 58.926 37.037 0.00 0.00 0.00 2.90
2272 4660 0.601057 TCGATCACGGAACAGAGCAA 59.399 50.000 0.00 0.00 40.21 3.91
2314 4702 2.987355 AAACGGCCGGGTTCCACAAT 62.987 55.000 31.76 0.00 0.00 2.71
2460 5052 0.099082 GTAGAACTCGACGGAGCAGG 59.901 60.000 0.00 0.00 44.48 4.85
2640 6008 2.992543 GCATGCCAATTACTCGCAAAAA 59.007 40.909 6.36 0.00 35.85 1.94
2641 6009 2.029560 TGCATGCCAATTACTCGCAAAA 60.030 40.909 16.68 0.00 35.85 2.44
2642 6010 1.543358 TGCATGCCAATTACTCGCAAA 59.457 42.857 16.68 0.00 35.85 3.68
2643 6011 1.172175 TGCATGCCAATTACTCGCAA 58.828 45.000 16.68 0.00 35.85 4.85
2644 6012 1.135431 GTTGCATGCCAATTACTCGCA 60.135 47.619 16.68 0.00 35.55 5.10
2645 6013 1.548986 GTTGCATGCCAATTACTCGC 58.451 50.000 16.68 0.00 35.55 5.03
2646 6014 1.130373 ACGTTGCATGCCAATTACTCG 59.870 47.619 16.68 10.80 35.55 4.18
2647 6015 2.095263 ACACGTTGCATGCCAATTACTC 60.095 45.455 16.68 0.00 35.55 2.59
2648 6016 1.885887 ACACGTTGCATGCCAATTACT 59.114 42.857 16.68 0.00 35.55 2.24
2704 6075 1.344438 GACCCACACATCAGACTGACA 59.656 52.381 7.47 0.00 0.00 3.58
2735 6203 7.038017 TCCCCATTTTAGCATTTGAATTGGTTA 60.038 33.333 0.00 0.00 0.00 2.85
2761 6235 4.335315 CGCACACATAAGTTTACCATGGAT 59.665 41.667 21.47 5.32 0.00 3.41
2873 6347 8.762645 ACACCTTATATCTGTGAATGAAGAAGA 58.237 33.333 6.28 0.00 34.18 2.87
2921 6395 9.532697 CACTTAAACGTGTTTATGTATACAACC 57.467 33.333 18.07 0.00 39.70 3.77
3017 6491 2.945456 ACATGTGAGATACCGCCTCTA 58.055 47.619 0.00 0.00 0.00 2.43
3023 6497 4.583489 ACCTTAGGTACATGTGAGATACCG 59.417 45.833 9.11 0.00 42.75 4.02
3035 6509 7.222872 TCCGTTTAATTTGAACCTTAGGTACA 58.777 34.615 3.55 0.00 33.12 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.