Multiple sequence alignment - TraesCS3B01G468900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G468900 chr3B 100.000 4983 0 0 1 4983 714619387 714624369 0.000000e+00 9202.0
1 TraesCS3B01G468900 chr3B 87.000 700 38 14 1 647 657696253 657696952 0.000000e+00 739.0
2 TraesCS3B01G468900 chr3B 87.338 616 39 15 1 580 13989717 13990329 0.000000e+00 669.0
3 TraesCS3B01G468900 chr3B 100.000 334 0 0 5292 5625 714624678 714625011 8.010000e-173 617.0
4 TraesCS3B01G468900 chr3B 85.821 268 27 8 3447 3710 700376611 700376351 2.000000e-69 274.0
5 TraesCS3B01G468900 chr3D 92.675 2785 143 21 2231 4983 539119274 539122029 0.000000e+00 3956.0
6 TraesCS3B01G468900 chr3D 95.706 1048 42 3 712 1757 539117757 539118803 0.000000e+00 1683.0
7 TraesCS3B01G468900 chr3D 82.156 269 35 9 3441 3703 607320706 607320967 9.490000e-53 219.0
8 TraesCS3B01G468900 chr3D 80.546 293 46 6 1880 2165 539118989 539119277 1.230000e-51 215.0
9 TraesCS3B01G468900 chr3D 91.275 149 13 0 5474 5622 539122553 539122701 2.660000e-48 204.0
10 TraesCS3B01G468900 chr3D 85.165 182 17 6 2593 2772 365520858 365521031 1.610000e-40 178.0
11 TraesCS3B01G468900 chr3D 88.462 78 9 0 4032 4109 539121116 539121193 1.670000e-15 95.3
12 TraesCS3B01G468900 chr3D 93.548 62 4 0 4097 4158 539121085 539121146 6.000000e-15 93.5
13 TraesCS3B01G468900 chr3A 91.591 1427 86 10 2760 4158 674400613 674402033 0.000000e+00 1940.0
14 TraesCS3B01G468900 chr3A 90.372 1423 103 17 760 2165 674398850 674400255 0.000000e+00 1838.0
15 TraesCS3B01G468900 chr3A 90.051 975 68 13 4032 4983 674401955 674402923 0.000000e+00 1236.0
16 TraesCS3B01G468900 chr3A 87.623 509 29 13 1 479 623885476 623884972 1.370000e-155 560.0
17 TraesCS3B01G468900 chr3A 92.308 364 27 1 2231 2594 674400252 674400614 3.000000e-142 516.0
18 TraesCS3B01G468900 chr3A 86.471 170 15 2 2593 2761 600923240 600923078 4.480000e-41 180.0
19 TraesCS3B01G468900 chr3A 89.474 76 8 0 4035 4110 674402006 674402081 4.640000e-16 97.1
20 TraesCS3B01G468900 chr3A 88.732 71 8 0 587 657 623876127 623876057 2.790000e-13 87.9
21 TraesCS3B01G468900 chr3A 92.188 64 2 2 4095 4158 674401925 674401985 2.790000e-13 87.9
22 TraesCS3B01G468900 chr1D 86.570 618 44 12 1 583 77346950 77346337 0.000000e+00 645.0
23 TraesCS3B01G468900 chr1D 85.632 174 16 3 2596 2767 435277142 435276976 2.080000e-39 174.0
24 TraesCS3B01G468900 chr1D 93.443 61 4 0 600 660 61374231 61374171 2.160000e-14 91.6
25 TraesCS3B01G468900 chr1D 87.838 74 9 0 584 657 77346313 77346240 2.790000e-13 87.9
26 TraesCS3B01G468900 chr1B 90.180 499 25 5 1 476 50151491 50151988 3.700000e-176 628.0
27 TraesCS3B01G468900 chr6B 85.669 635 38 14 1 584 420670657 420670025 2.230000e-173 619.0
28 TraesCS3B01G468900 chr6B 97.872 47 1 0 587 633 420670002 420669956 1.300000e-11 82.4
29 TraesCS3B01G468900 chr7D 84.628 605 47 22 1 576 631326334 631325747 1.370000e-155 560.0
30 TraesCS3B01G468900 chr7D 81.754 285 35 13 3441 3713 622226701 622226980 7.330000e-54 222.0
31 TraesCS3B01G468900 chr4B 86.465 495 37 12 1 466 553948913 553949406 3.000000e-142 516.0
32 TraesCS3B01G468900 chr4B 81.041 269 37 10 3445 3707 3697438 3697178 9.560000e-48 202.0
33 TraesCS3B01G468900 chr4B 84.348 115 10 3 1 112 167402073 167401964 7.710000e-19 106.0
34 TraesCS3B01G468900 chr4A 83.607 549 60 11 59 581 514916613 514917157 6.550000e-134 488.0
35 TraesCS3B01G468900 chr5D 83.740 492 39 18 1 471 400782880 400783351 1.450000e-115 427.0
36 TraesCS3B01G468900 chr5D 89.706 68 7 0 584 651 400783470 400783537 2.790000e-13 87.9
37 TraesCS3B01G468900 chr5B 82.909 275 30 15 3441 3707 697376420 697376685 1.220000e-56 231.0
38 TraesCS3B01G468900 chr5B 89.474 171 17 1 2592 2761 566976351 566976181 1.230000e-51 215.0
39 TraesCS3B01G468900 chr1A 82.772 267 32 10 3444 3703 541655680 541655421 5.670000e-55 226.0
40 TraesCS3B01G468900 chr1A 87.059 170 14 2 2593 2761 564367240 564367402 9.620000e-43 185.0
41 TraesCS3B01G468900 chr6A 81.752 274 35 13 3444 3712 24092561 24092298 1.230000e-51 215.0
42 TraesCS3B01G468900 chr6A 83.889 180 24 2 2589 2768 574612010 574611836 3.490000e-37 167.0
43 TraesCS3B01G468900 chr6A 94.366 71 4 0 584 654 572259466 572259536 5.960000e-20 110.0
44 TraesCS3B01G468900 chr6A 88.732 71 8 0 584 654 569588959 569589029 2.790000e-13 87.9
45 TraesCS3B01G468900 chr4D 87.209 172 15 2 2590 2761 64390635 64390471 7.440000e-44 189.0
46 TraesCS3B01G468900 chr2D 85.393 178 17 4 2584 2761 617215180 617215348 5.790000e-40 176.0
47 TraesCS3B01G468900 chr6D 84.971 173 22 2 2593 2761 371530206 371530034 7.490000e-39 172.0
48 TraesCS3B01G468900 chr6D 89.610 77 8 0 584 660 431923947 431924023 1.290000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G468900 chr3B 714619387 714625011 5624 False 4909.500000 9202 100.000000 1 5625 2 chr3B.!!$F3 5624
1 TraesCS3B01G468900 chr3B 657696253 657696952 699 False 739.000000 739 87.000000 1 647 1 chr3B.!!$F2 646
2 TraesCS3B01G468900 chr3B 13989717 13990329 612 False 669.000000 669 87.338000 1 580 1 chr3B.!!$F1 579
3 TraesCS3B01G468900 chr3D 539117757 539122701 4944 False 1041.133333 3956 90.368667 712 5622 6 chr3D.!!$F3 4910
4 TraesCS3B01G468900 chr3A 674398850 674402923 4073 False 952.500000 1940 90.997333 760 4983 6 chr3A.!!$F1 4223
5 TraesCS3B01G468900 chr3A 623884972 623885476 504 True 560.000000 560 87.623000 1 479 1 chr3A.!!$R3 478
6 TraesCS3B01G468900 chr1D 77346240 77346950 710 True 366.450000 645 87.204000 1 657 2 chr1D.!!$R3 656
7 TraesCS3B01G468900 chr6B 420669956 420670657 701 True 350.700000 619 91.770500 1 633 2 chr6B.!!$R1 632
8 TraesCS3B01G468900 chr7D 631325747 631326334 587 True 560.000000 560 84.628000 1 576 1 chr7D.!!$R1 575
9 TraesCS3B01G468900 chr4A 514916613 514917157 544 False 488.000000 488 83.607000 59 581 1 chr4A.!!$F1 522
10 TraesCS3B01G468900 chr5D 400782880 400783537 657 False 257.450000 427 86.723000 1 651 2 chr5D.!!$F1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 753 0.569349 GCCGACTAAACGCGTACATC 59.431 55.000 14.46 7.44 0.00 3.06 F
1527 1624 0.903454 ACGACGGGGAGGACAAGAAT 60.903 55.000 0.00 0.00 0.00 2.40 F
1923 2111 1.065199 TGGTGCTGATGAGGTCCATTC 60.065 52.381 0.00 0.00 35.17 2.67 F
3366 3571 0.036164 ACGCCTGATTTGCACTGGTA 59.964 50.000 0.00 0.00 0.00 3.25 F
4314 4605 0.036010 CAGATCTCAAACCACCGGCT 60.036 55.000 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2345 2540 0.098728 CGCCATCCTTTACCGCAAAG 59.901 55.0 1.79 1.79 42.90 2.77 R
2640 2835 2.290641 CCCATTTTGCTCCGTATGTAGC 59.709 50.0 0.00 0.00 39.25 3.58 R
3461 3685 2.791383 TTTCGGTTGGTGCTGAAATG 57.209 45.0 0.00 0.00 38.41 2.32 R
4407 4701 0.109226 GTTCGACGGCTTCTGCTACT 60.109 55.0 0.00 0.00 39.59 2.57 R
5445 5901 0.034767 ATGATGACCCACACCTGCAG 60.035 55.0 6.78 6.78 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 105 2.101917 GCCTGGCATGCATGTTTAGAAT 59.898 45.455 26.79 0.00 0.00 2.40
104 106 3.713288 CCTGGCATGCATGTTTAGAATG 58.287 45.455 26.79 9.36 0.00 2.67
105 107 3.131577 CCTGGCATGCATGTTTAGAATGT 59.868 43.478 26.79 0.00 0.00 2.71
106 108 4.382254 CCTGGCATGCATGTTTAGAATGTT 60.382 41.667 26.79 0.00 0.00 2.71
108 110 4.220163 TGGCATGCATGTTTAGAATGTTCA 59.780 37.500 26.79 0.00 0.00 3.18
109 111 4.802039 GGCATGCATGTTTAGAATGTTCAG 59.198 41.667 26.79 0.00 0.00 3.02
181 205 4.105754 TGTTGACAATGGGGTAATGTGA 57.894 40.909 0.00 0.00 0.00 3.58
253 289 8.615878 AAGTGTGTTTATAGATGCAGTACAAA 57.384 30.769 0.00 0.00 0.00 2.83
330 368 2.090775 TGGTATGGCTCTGATCACCCTA 60.091 50.000 0.00 0.00 0.00 3.53
408 446 2.111972 TGTACAGGAGGAGGAAGAAGGT 59.888 50.000 0.00 0.00 0.00 3.50
411 449 1.219393 GGAGGAGGAAGAAGGTGCG 59.781 63.158 0.00 0.00 0.00 5.34
480 518 3.961414 GGCGTGGGAGGGGTTGAA 61.961 66.667 0.00 0.00 0.00 2.69
535 607 2.026636 CACGTGGGGATCCCTTTTTCTA 60.027 50.000 30.08 5.71 45.70 2.10
550 622 2.818751 TTCTATTTGGGATTGGGCGT 57.181 45.000 0.00 0.00 0.00 5.68
558 630 2.406616 GGATTGGGCGTTGCATCGT 61.407 57.895 17.75 0.00 0.00 3.73
559 631 1.506262 GATTGGGCGTTGCATCGTT 59.494 52.632 17.75 0.00 0.00 3.85
629 724 1.728069 GCTCGATCGCACTAGTGGA 59.272 57.895 23.95 18.44 0.00 4.02
654 749 2.202466 CCGCCGACTAAACGCGTA 60.202 61.111 14.46 0.00 33.69 4.42
657 752 1.135699 CGCCGACTAAACGCGTACAT 61.136 55.000 14.46 4.53 0.00 2.29
658 753 0.569349 GCCGACTAAACGCGTACATC 59.431 55.000 14.46 7.44 0.00 3.06
659 754 1.796617 GCCGACTAAACGCGTACATCT 60.797 52.381 14.46 0.00 0.00 2.90
660 755 2.523015 CCGACTAAACGCGTACATCTT 58.477 47.619 14.46 5.04 0.00 2.40
661 756 3.683989 CCGACTAAACGCGTACATCTTA 58.316 45.455 14.46 6.13 0.00 2.10
662 757 3.479949 CCGACTAAACGCGTACATCTTAC 59.520 47.826 14.46 0.00 0.00 2.34
663 758 4.337763 CGACTAAACGCGTACATCTTACT 58.662 43.478 14.46 0.00 0.00 2.24
664 759 5.492854 CGACTAAACGCGTACATCTTACTA 58.507 41.667 14.46 0.00 0.00 1.82
665 760 6.132056 CGACTAAACGCGTACATCTTACTAT 58.868 40.000 14.46 0.00 0.00 2.12
666 761 7.283633 CGACTAAACGCGTACATCTTACTATA 58.716 38.462 14.46 0.00 0.00 1.31
667 762 7.473718 CGACTAAACGCGTACATCTTACTATAG 59.526 40.741 14.46 0.00 0.00 1.31
668 763 8.370493 ACTAAACGCGTACATCTTACTATAGA 57.630 34.615 14.46 0.00 0.00 1.98
669 764 8.494347 ACTAAACGCGTACATCTTACTATAGAG 58.506 37.037 14.46 0.00 0.00 2.43
670 765 5.280328 ACGCGTACATCTTACTATAGAGC 57.720 43.478 11.67 0.00 0.00 4.09
671 766 4.753610 ACGCGTACATCTTACTATAGAGCA 59.246 41.667 11.67 0.00 0.00 4.26
672 767 5.411977 ACGCGTACATCTTACTATAGAGCAT 59.588 40.000 11.67 0.00 0.00 3.79
673 768 5.734963 CGCGTACATCTTACTATAGAGCATG 59.265 44.000 6.78 5.62 0.00 4.06
674 769 5.513495 GCGTACATCTTACTATAGAGCATGC 59.487 44.000 10.51 10.51 0.00 4.06
675 770 6.612306 CGTACATCTTACTATAGAGCATGCA 58.388 40.000 21.98 0.00 0.00 3.96
676 771 7.254137 CGTACATCTTACTATAGAGCATGCAT 58.746 38.462 21.98 10.70 0.00 3.96
677 772 7.219726 CGTACATCTTACTATAGAGCATGCATG 59.780 40.741 22.70 22.70 0.00 4.06
722 817 8.286191 ACAGATATTAGATATGTCATGCTCGA 57.714 34.615 0.00 0.00 0.00 4.04
727 822 4.250116 AGATATGTCATGCTCGAGGTTC 57.750 45.455 15.58 0.00 0.00 3.62
731 826 2.176045 TGTCATGCTCGAGGTTCCTAA 58.824 47.619 15.58 0.00 0.00 2.69
732 827 2.166459 TGTCATGCTCGAGGTTCCTAAG 59.834 50.000 15.58 0.00 0.00 2.18
740 836 5.187186 TGCTCGAGGTTCCTAAGAAATAACT 59.813 40.000 15.58 0.00 32.58 2.24
786 882 9.690434 GAAATGACAAACAAGATCGTATTCTAC 57.310 33.333 0.00 0.00 0.00 2.59
861 957 2.994995 TCCTCATCCACGTGGCGT 60.995 61.111 30.25 17.67 42.36 5.68
909 1006 2.143419 CCCCTTCCTCATCTCCCCG 61.143 68.421 0.00 0.00 0.00 5.73
1242 1339 1.770324 CTTTGCCCTCCCAGACCTT 59.230 57.895 0.00 0.00 0.00 3.50
1499 1596 1.073199 CCAAGAAGAAGGCGGTGGT 59.927 57.895 0.00 0.00 0.00 4.16
1527 1624 0.903454 ACGACGGGGAGGACAAGAAT 60.903 55.000 0.00 0.00 0.00 2.40
1722 1819 4.508124 GGAATAGTGCCGTCTTATGTTCTG 59.492 45.833 0.00 0.00 0.00 3.02
1797 1894 6.287525 CAATGAACTTGTTGGTTGGGTAAAT 58.712 36.000 0.00 0.00 0.00 1.40
1815 1912 8.451908 GGGTAAATTCCCATATGTATATGCTC 57.548 38.462 1.24 0.00 46.30 4.26
1816 1913 8.052748 GGGTAAATTCCCATATGTATATGCTCA 58.947 37.037 1.24 0.00 46.30 4.26
1817 1914 9.113838 GGTAAATTCCCATATGTATATGCTCAG 57.886 37.037 1.24 0.00 38.99 3.35
1818 1915 9.672673 GTAAATTCCCATATGTATATGCTCAGT 57.327 33.333 1.24 0.00 38.99 3.41
1819 1916 8.571461 AAATTCCCATATGTATATGCTCAGTG 57.429 34.615 1.24 0.00 38.99 3.66
1820 1917 6.933514 TTCCCATATGTATATGCTCAGTGA 57.066 37.500 1.24 0.00 38.99 3.41
1835 1932 4.798924 GCTCAGTGATGTATCCCTGATGTC 60.799 50.000 7.36 0.00 39.85 3.06
1837 1934 3.389002 CAGTGATGTATCCCTGATGTCCA 59.611 47.826 0.00 0.00 34.74 4.02
1838 1935 4.041321 CAGTGATGTATCCCTGATGTCCAT 59.959 45.833 0.00 0.00 34.74 3.41
1873 1971 6.480524 TGACTTCTGGAAAATATGTTGTCG 57.519 37.500 0.00 0.00 0.00 4.35
1889 2077 4.025229 TGTTGTCGACACTTAGAACATTGC 60.025 41.667 19.90 0.00 32.00 3.56
1890 2078 3.064207 TGTCGACACTTAGAACATTGCC 58.936 45.455 15.76 0.00 0.00 4.52
1894 2082 5.350365 GTCGACACTTAGAACATTGCCAATA 59.650 40.000 11.55 0.00 0.00 1.90
1901 2089 9.113838 CACTTAGAACATTGCCAATACTTCTAT 57.886 33.333 13.53 2.94 0.00 1.98
1909 2097 5.567037 TGCCAATACTTCTATATGGTGCT 57.433 39.130 0.00 0.00 0.00 4.40
1915 2103 7.548427 CCAATACTTCTATATGGTGCTGATGAG 59.452 40.741 0.00 0.00 0.00 2.90
1919 2107 3.834813 TCTATATGGTGCTGATGAGGTCC 59.165 47.826 0.00 0.00 0.00 4.46
1923 2111 1.065199 TGGTGCTGATGAGGTCCATTC 60.065 52.381 0.00 0.00 35.17 2.67
1930 2118 4.445448 GCTGATGAGGTCCATTCTGGTAAT 60.445 45.833 0.00 0.00 39.03 1.89
1931 2119 5.221722 GCTGATGAGGTCCATTCTGGTAATA 60.222 44.000 0.00 0.00 39.03 0.98
1932 2120 6.688922 GCTGATGAGGTCCATTCTGGTAATAA 60.689 42.308 0.00 0.00 39.03 1.40
1933 2121 7.206789 TGATGAGGTCCATTCTGGTAATAAA 57.793 36.000 0.00 0.00 39.03 1.40
1988 2177 2.435805 TGTCACCAGAGAAAAGCTGACT 59.564 45.455 0.00 0.00 35.39 3.41
1992 2181 4.070716 CACCAGAGAAAAGCTGACTGATT 58.929 43.478 0.00 0.00 35.39 2.57
1997 2186 6.141462 CAGAGAAAAGCTGACTGATTGTTTC 58.859 40.000 0.00 0.00 35.39 2.78
1998 2187 5.824624 AGAGAAAAGCTGACTGATTGTTTCA 59.175 36.000 0.00 0.00 0.00 2.69
2010 2199 8.423349 TGACTGATTGTTTCAATCTTGGAAAAT 58.577 29.630 18.81 0.00 36.14 1.82
2011 2200 8.822652 ACTGATTGTTTCAATCTTGGAAAATC 57.177 30.769 18.81 9.53 36.14 2.17
2069 2258 4.642885 TCACTTTTCCCTTTTGATCAACGT 59.357 37.500 7.89 0.00 0.00 3.99
2071 2260 5.458779 CACTTTTCCCTTTTGATCAACGTTC 59.541 40.000 7.89 0.00 0.00 3.95
2083 2272 4.158209 TGATCAACGTTCTATGGTTCCGTA 59.842 41.667 0.00 0.00 0.00 4.02
2103 2292 4.094442 CGTAAAAAGGGAGGCACATACTTC 59.906 45.833 0.00 0.00 0.00 3.01
2105 2294 3.806949 AAAGGGAGGCACATACTTCAA 57.193 42.857 0.00 0.00 0.00 2.69
2106 2295 3.806949 AAGGGAGGCACATACTTCAAA 57.193 42.857 0.00 0.00 0.00 2.69
2107 2296 3.806949 AGGGAGGCACATACTTCAAAA 57.193 42.857 0.00 0.00 0.00 2.44
2113 2304 6.368791 GGGAGGCACATACTTCAAAAATTTTC 59.631 38.462 3.41 0.00 0.00 2.29
2115 2306 7.329471 GGAGGCACATACTTCAAAAATTTTCTC 59.671 37.037 3.41 1.93 0.00 2.87
2142 2333 6.515272 TTCAGGAGGAAGCAAATTATTGTC 57.485 37.500 0.00 0.00 38.85 3.18
2145 2336 6.095860 TCAGGAGGAAGCAAATTATTGTCATG 59.904 38.462 0.00 0.00 38.85 3.07
2150 2345 9.455847 GAGGAAGCAAATTATTGTCATGTTATC 57.544 33.333 0.00 0.00 38.85 1.75
2152 2347 7.379529 GGAAGCAAATTATTGTCATGTTATCGG 59.620 37.037 0.00 0.00 38.85 4.18
2162 2357 4.634004 TGTCATGTTATCGGAATTGTCCAC 59.366 41.667 0.00 0.00 45.26 4.02
2163 2358 4.634004 GTCATGTTATCGGAATTGTCCACA 59.366 41.667 0.00 0.00 45.26 4.17
2164 2359 5.296780 GTCATGTTATCGGAATTGTCCACAT 59.703 40.000 0.00 0.00 45.26 3.21
2165 2360 5.885352 TCATGTTATCGGAATTGTCCACATT 59.115 36.000 0.00 0.00 45.26 2.71
2166 2361 6.376864 TCATGTTATCGGAATTGTCCACATTT 59.623 34.615 0.00 0.00 45.26 2.32
2167 2362 6.189677 TGTTATCGGAATTGTCCACATTTC 57.810 37.500 5.98 5.98 45.26 2.17
2168 2363 5.943416 TGTTATCGGAATTGTCCACATTTCT 59.057 36.000 11.98 0.00 45.26 2.52
2169 2364 4.970662 ATCGGAATTGTCCACATTTCTG 57.029 40.909 13.54 13.54 45.26 3.02
2170 2365 4.014569 TCGGAATTGTCCACATTTCTGA 57.985 40.909 16.59 16.59 45.26 3.27
2171 2366 4.588899 TCGGAATTGTCCACATTTCTGAT 58.411 39.130 16.59 0.00 45.26 2.90
2172 2367 4.635765 TCGGAATTGTCCACATTTCTGATC 59.364 41.667 16.59 0.00 45.26 2.92
2173 2368 4.395854 CGGAATTGTCCACATTTCTGATCA 59.604 41.667 14.18 0.00 45.26 2.92
2174 2369 5.066893 CGGAATTGTCCACATTTCTGATCAT 59.933 40.000 14.18 0.00 45.26 2.45
2175 2370 6.270815 GGAATTGTCCACATTTCTGATCATG 58.729 40.000 11.98 0.00 44.26 3.07
2176 2371 6.127535 GGAATTGTCCACATTTCTGATCATGT 60.128 38.462 11.98 0.00 44.26 3.21
2177 2372 6.845758 ATTGTCCACATTTCTGATCATGTT 57.154 33.333 0.00 0.00 30.90 2.71
2178 2373 6.653526 TTGTCCACATTTCTGATCATGTTT 57.346 33.333 0.00 0.00 30.90 2.83
2179 2374 6.016213 TGTCCACATTTCTGATCATGTTTG 57.984 37.500 0.00 0.00 30.90 2.93
2180 2375 5.769162 TGTCCACATTTCTGATCATGTTTGA 59.231 36.000 0.00 0.00 30.90 2.69
2181 2376 6.434965 TGTCCACATTTCTGATCATGTTTGAT 59.565 34.615 0.00 0.00 45.39 2.57
2182 2377 6.750501 GTCCACATTTCTGATCATGTTTGATG 59.249 38.462 0.00 0.00 42.73 3.07
2183 2378 6.434965 TCCACATTTCTGATCATGTTTGATGT 59.565 34.615 0.00 0.00 42.73 3.06
2184 2379 7.611079 TCCACATTTCTGATCATGTTTGATGTA 59.389 33.333 0.00 0.00 42.73 2.29
2185 2380 7.699391 CCACATTTCTGATCATGTTTGATGTAC 59.301 37.037 0.00 0.00 42.73 2.90
2186 2381 7.427318 CACATTTCTGATCATGTTTGATGTACG 59.573 37.037 0.00 0.00 42.73 3.67
2187 2382 7.334171 ACATTTCTGATCATGTTTGATGTACGA 59.666 33.333 0.00 0.00 42.73 3.43
2188 2383 7.665561 TTTCTGATCATGTTTGATGTACGAA 57.334 32.000 0.00 0.00 42.73 3.85
2189 2384 7.665561 TTCTGATCATGTTTGATGTACGAAA 57.334 32.000 0.00 0.00 42.73 3.46
2190 2385 7.060600 TCTGATCATGTTTGATGTACGAAAC 57.939 36.000 0.00 7.62 42.73 2.78
2191 2386 6.873605 TCTGATCATGTTTGATGTACGAAACT 59.126 34.615 0.00 0.00 42.73 2.66
2192 2387 6.830736 TGATCATGTTTGATGTACGAAACTG 58.169 36.000 13.16 9.99 42.73 3.16
2193 2388 5.605564 TCATGTTTGATGTACGAAACTGG 57.394 39.130 13.16 7.67 33.92 4.00
2194 2389 3.889196 TGTTTGATGTACGAAACTGGC 57.111 42.857 13.16 0.00 33.92 4.85
2195 2390 3.206964 TGTTTGATGTACGAAACTGGCA 58.793 40.909 13.16 0.00 33.92 4.92
2196 2391 3.628032 TGTTTGATGTACGAAACTGGCAA 59.372 39.130 13.16 0.00 33.92 4.52
2197 2392 4.096532 TGTTTGATGTACGAAACTGGCAAA 59.903 37.500 13.16 0.00 33.92 3.68
2198 2393 4.481930 TTGATGTACGAAACTGGCAAAG 57.518 40.909 0.00 0.00 0.00 2.77
2199 2394 3.734463 TGATGTACGAAACTGGCAAAGA 58.266 40.909 0.00 0.00 0.00 2.52
2200 2395 4.130857 TGATGTACGAAACTGGCAAAGAA 58.869 39.130 0.00 0.00 0.00 2.52
2201 2396 4.759693 TGATGTACGAAACTGGCAAAGAAT 59.240 37.500 0.00 0.00 0.00 2.40
2202 2397 5.935206 TGATGTACGAAACTGGCAAAGAATA 59.065 36.000 0.00 0.00 0.00 1.75
2203 2398 6.428465 TGATGTACGAAACTGGCAAAGAATAA 59.572 34.615 0.00 0.00 0.00 1.40
2204 2399 6.811253 TGTACGAAACTGGCAAAGAATAAT 57.189 33.333 0.00 0.00 0.00 1.28
2205 2400 7.209471 TGTACGAAACTGGCAAAGAATAATT 57.791 32.000 0.00 0.00 0.00 1.40
2206 2401 7.081349 TGTACGAAACTGGCAAAGAATAATTG 58.919 34.615 0.00 0.00 0.00 2.32
2207 2402 6.325919 ACGAAACTGGCAAAGAATAATTGA 57.674 33.333 0.00 0.00 0.00 2.57
2208 2403 6.149633 ACGAAACTGGCAAAGAATAATTGAC 58.850 36.000 0.00 0.00 36.31 3.18
2209 2404 6.016276 ACGAAACTGGCAAAGAATAATTGACT 60.016 34.615 0.00 0.00 36.72 3.41
2210 2405 6.863126 CGAAACTGGCAAAGAATAATTGACTT 59.137 34.615 0.00 0.00 36.72 3.01
2211 2406 7.148918 CGAAACTGGCAAAGAATAATTGACTTG 60.149 37.037 0.00 0.00 36.72 3.16
2212 2407 6.655078 ACTGGCAAAGAATAATTGACTTGT 57.345 33.333 0.00 0.00 36.72 3.16
2213 2408 6.681777 ACTGGCAAAGAATAATTGACTTGTC 58.318 36.000 0.00 0.00 36.72 3.18
2214 2409 6.265196 ACTGGCAAAGAATAATTGACTTGTCA 59.735 34.615 0.00 0.00 36.72 3.58
2215 2410 7.039504 ACTGGCAAAGAATAATTGACTTGTCAT 60.040 33.333 4.18 0.00 36.72 3.06
2216 2411 7.315142 TGGCAAAGAATAATTGACTTGTCATC 58.685 34.615 4.18 0.00 36.72 2.92
2217 2412 6.753744 GGCAAAGAATAATTGACTTGTCATCC 59.246 38.462 4.18 0.00 32.88 3.51
2218 2413 7.363268 GGCAAAGAATAATTGACTTGTCATCCT 60.363 37.037 4.18 0.00 32.88 3.24
2219 2414 7.699812 GCAAAGAATAATTGACTTGTCATCCTC 59.300 37.037 4.18 0.00 0.00 3.71
2220 2415 7.872113 AAGAATAATTGACTTGTCATCCTCC 57.128 36.000 4.18 0.00 0.00 4.30
2221 2416 6.962182 AGAATAATTGACTTGTCATCCTCCA 58.038 36.000 4.18 0.00 0.00 3.86
2222 2417 7.580910 AGAATAATTGACTTGTCATCCTCCAT 58.419 34.615 4.18 0.00 0.00 3.41
2223 2418 7.718753 AGAATAATTGACTTGTCATCCTCCATC 59.281 37.037 4.18 0.00 0.00 3.51
2224 2419 4.849813 ATTGACTTGTCATCCTCCATCA 57.150 40.909 4.18 0.00 0.00 3.07
2225 2420 4.849813 TTGACTTGTCATCCTCCATCAT 57.150 40.909 4.18 0.00 0.00 2.45
2226 2421 4.146745 TGACTTGTCATCCTCCATCATG 57.853 45.455 0.00 0.00 0.00 3.07
2227 2422 3.776417 TGACTTGTCATCCTCCATCATGA 59.224 43.478 0.00 0.00 0.00 3.07
2228 2423 4.141779 TGACTTGTCATCCTCCATCATGAG 60.142 45.833 0.09 0.00 29.46 2.90
2229 2424 3.779183 ACTTGTCATCCTCCATCATGAGT 59.221 43.478 0.09 0.00 29.46 3.41
2230 2425 4.964897 ACTTGTCATCCTCCATCATGAGTA 59.035 41.667 0.09 0.00 29.46 2.59
2271 2466 5.640357 TGTCCCTATGAACATTTACGTGAAC 59.360 40.000 0.00 0.00 0.00 3.18
2275 2470 7.228906 TCCCTATGAACATTTACGTGAACAAAA 59.771 33.333 0.00 0.00 0.00 2.44
2300 2495 2.586648 ACAGGTTTGATGGGAACTCC 57.413 50.000 0.00 0.00 0.00 3.85
2303 2498 1.279271 AGGTTTGATGGGAACTCCGAG 59.721 52.381 0.00 0.00 38.76 4.63
2345 2540 2.944129 TCCAATGGCTATAAAGGTGCC 58.056 47.619 0.00 0.00 46.26 5.01
2477 2672 2.862541 TGTCACCATTTGCTAGTGCTT 58.137 42.857 0.00 0.00 40.48 3.91
2579 2774 9.567848 TGAGTTCAACTTGACTTTTATTTTGTC 57.432 29.630 0.00 0.00 0.00 3.18
2588 2783 8.696410 TTGACTTTTATTTTGTCAACCTTCAC 57.304 30.769 0.00 0.00 43.15 3.18
2590 2785 8.527810 TGACTTTTATTTTGTCAACCTTCACTT 58.472 29.630 0.00 0.00 37.71 3.16
2591 2786 8.926715 ACTTTTATTTTGTCAACCTTCACTTC 57.073 30.769 0.00 0.00 0.00 3.01
2600 2795 3.833070 TCAACCTTCACTTCTACTCCCTC 59.167 47.826 0.00 0.00 0.00 4.30
2601 2796 3.544698 ACCTTCACTTCTACTCCCTCA 57.455 47.619 0.00 0.00 0.00 3.86
2667 2862 1.818674 ACGGAGCAAAATGGGTGAATC 59.181 47.619 0.00 0.00 0.00 2.52
2673 2868 4.666512 AGCAAAATGGGTGAATCTACACT 58.333 39.130 0.00 0.00 40.22 3.55
2674 2869 4.702131 AGCAAAATGGGTGAATCTACACTC 59.298 41.667 0.00 0.00 41.16 3.51
2675 2870 4.702131 GCAAAATGGGTGAATCTACACTCT 59.298 41.667 0.00 0.00 41.33 3.24
2676 2871 5.880332 GCAAAATGGGTGAATCTACACTCTA 59.120 40.000 0.00 0.00 41.33 2.43
2677 2872 6.374333 GCAAAATGGGTGAATCTACACTCTAA 59.626 38.462 0.00 0.00 41.33 2.10
2678 2873 7.094377 GCAAAATGGGTGAATCTACACTCTAAA 60.094 37.037 0.00 0.00 41.33 1.85
2679 2874 8.960591 CAAAATGGGTGAATCTACACTCTAAAT 58.039 33.333 0.00 0.00 41.33 1.40
2680 2875 9.533831 AAAATGGGTGAATCTACACTCTAAATT 57.466 29.630 0.00 0.00 41.33 1.82
2681 2876 8.738645 AATGGGTGAATCTACACTCTAAATTC 57.261 34.615 0.00 0.00 41.33 2.17
2725 2920 7.509141 TCCGTATGTAGTCCGTATTGAAATA 57.491 36.000 0.00 0.00 0.00 1.40
2727 2922 8.579006 TCCGTATGTAGTCCGTATTGAAATATT 58.421 33.333 0.00 0.00 0.00 1.28
2846 3041 0.392193 CAGTCCTGAGTGTGATGCCC 60.392 60.000 0.00 0.00 0.00 5.36
2946 3141 7.497909 CCTACACAGAGGTTTCTAAAACTTGAA 59.502 37.037 0.00 0.00 35.74 2.69
2948 3143 6.183360 ACACAGAGGTTTCTAAAACTTGAAGC 60.183 38.462 0.00 0.00 35.74 3.86
2981 3176 7.830099 ATTTTGAGGAGTTGAATCAGTTTCT 57.170 32.000 0.00 0.00 35.23 2.52
3078 3273 2.035421 CTTGTGGCAAGCAAGCTCA 58.965 52.632 5.09 0.00 37.18 4.26
3080 3275 0.599558 TTGTGGCAAGCAAGCTCATC 59.400 50.000 0.00 0.00 34.17 2.92
3132 3337 3.069778 GGGCTTTGGAGACCGACT 58.930 61.111 0.00 0.00 42.50 4.18
3144 3349 3.586892 GAGACCGACTACCTTTTCCTTG 58.413 50.000 0.00 0.00 0.00 3.61
3366 3571 0.036164 ACGCCTGATTTGCACTGGTA 59.964 50.000 0.00 0.00 0.00 3.25
3391 3596 8.511604 ACAAATTTTCATGTCCTCATAGTAGG 57.488 34.615 0.00 0.00 38.06 3.18
3461 3685 6.131389 GCATTGCAATTTCAGTTTCAGAAAC 58.869 36.000 17.11 17.11 37.76 2.78
3541 3765 7.260603 CCAAAGGGCTGAAATATTAACTTGAG 58.739 38.462 0.00 0.00 0.00 3.02
3777 4001 5.368145 ACATGTTCAAGTCTTCTAACTGCA 58.632 37.500 0.00 0.00 0.00 4.41
3856 4080 4.080919 CACTCTGAATATCCCCTTGTGACA 60.081 45.833 0.00 0.00 0.00 3.58
3860 4084 3.199946 TGAATATCCCCTTGTGACACCTC 59.800 47.826 2.45 0.00 0.00 3.85
3895 4119 6.804534 TGAGTAAACTTGCATTGTTTTTCG 57.195 33.333 18.90 0.00 38.41 3.46
3925 4152 1.079888 CGGGGAAACTTGCATTGGC 60.080 57.895 0.00 0.00 41.68 4.52
3934 4161 5.876460 GGAAACTTGCATTGGCTTTCATATT 59.124 36.000 0.00 0.00 41.91 1.28
3935 4162 6.183360 GGAAACTTGCATTGGCTTTCATATTG 60.183 38.462 0.00 0.00 41.91 1.90
4037 4266 0.322008 GCTAAGAGCCAACCAGCAGT 60.322 55.000 0.00 0.00 34.48 4.40
4051 4328 2.401766 GCAGTAGCAACAGCGGCAT 61.402 57.895 1.45 0.00 41.58 4.40
4145 4422 1.301677 GCACCAGTAGCAGAACCAGC 61.302 60.000 0.00 0.00 0.00 4.85
4173 4450 0.887836 CTGCAGAAGCCAGCACAGAA 60.888 55.000 8.42 0.00 41.13 3.02
4229 4506 4.925054 CCTGTCACCATTTGCAAATGTAAG 59.075 41.667 37.23 28.20 43.24 2.34
4232 4509 4.386652 GTCACCATTTGCAAATGTAAGCAG 59.613 41.667 37.23 27.08 43.24 4.24
4314 4605 0.036010 CAGATCTCAAACCACCGGCT 60.036 55.000 0.00 0.00 0.00 5.52
4337 4628 1.763770 CTTCCCCACCAGCTTCAGT 59.236 57.895 0.00 0.00 0.00 3.41
4359 4650 1.271217 GGTAAAACCGAGGTGAAGGCT 60.271 52.381 0.00 0.00 0.00 4.58
4361 4655 0.472471 AAAACCGAGGTGAAGGCTGA 59.528 50.000 0.00 0.00 0.00 4.26
4370 4664 0.671781 GTGAAGGCTGATGTCGCAGT 60.672 55.000 0.00 0.00 38.17 4.40
4372 4666 1.281899 GAAGGCTGATGTCGCAGTAC 58.718 55.000 0.00 0.00 38.17 2.73
4374 4668 0.972983 AGGCTGATGTCGCAGTACCT 60.973 55.000 0.00 0.00 38.17 3.08
4378 4672 2.263077 CTGATGTCGCAGTACCTGAAC 58.737 52.381 0.00 0.00 32.44 3.18
4383 4677 2.345991 GCAGTACCTGAACCGCCA 59.654 61.111 0.00 0.00 32.44 5.69
4401 4695 2.163818 CAGCGGTGGAAGTTAACTCA 57.836 50.000 8.95 0.28 0.00 3.41
4407 4701 2.486548 GGTGGAAGTTAACTCAGCACCA 60.487 50.000 17.13 14.21 0.00 4.17
4426 4720 0.109226 AGTAGCAGAAGCCGTCGAAC 60.109 55.000 0.00 0.00 43.56 3.95
4443 4737 0.035152 AACAATCATCGCCTCCTGCA 60.035 50.000 0.00 0.00 41.33 4.41
4494 4788 4.418392 ACGTAAGCTTATACTGTTCCGTG 58.582 43.478 9.88 0.00 45.62 4.94
4513 4807 4.033358 CCGTGACTTCAATATGCTTCACTC 59.967 45.833 0.00 0.00 32.84 3.51
4514 4808 4.867047 CGTGACTTCAATATGCTTCACTCT 59.133 41.667 0.00 0.00 32.84 3.24
4521 4819 7.661437 ACTTCAATATGCTTCACTCTACAAACA 59.339 33.333 0.00 0.00 0.00 2.83
4524 4822 6.727824 ATATGCTTCACTCTACAAACACAC 57.272 37.500 0.00 0.00 0.00 3.82
4533 4831 7.276658 TCACTCTACAAACACACCTGAAATAA 58.723 34.615 0.00 0.00 0.00 1.40
4549 4847 4.863689 TGAAATAAAAACGCCATGCTCATG 59.136 37.500 2.97 2.97 38.51 3.07
4570 4868 8.046294 TCATGGTTATACTTATTTTTGCGTGT 57.954 30.769 0.00 0.00 0.00 4.49
4618 4916 2.994995 TCTCCTTCGCCTTCGCCA 60.995 61.111 0.00 0.00 35.26 5.69
4731 5029 1.226603 GGCACCACGCTAGAGTACG 60.227 63.158 0.00 0.00 41.91 3.67
4788 5086 5.013861 TCGATTCGTTTTGCTCTTGTAAC 57.986 39.130 5.89 0.00 0.00 2.50
4810 5108 4.894114 ACTGTGGAACTACTAGAAGTGTGT 59.106 41.667 0.00 0.00 38.04 3.72
4825 5123 2.691526 AGTGTGTGTTTACGAGTCTGGA 59.308 45.455 0.00 0.00 0.00 3.86
4829 5127 4.171754 GTGTGTTTACGAGTCTGGATACC 58.828 47.826 0.00 0.00 0.00 2.73
4846 5145 5.003804 GGATACCACTTGACATGTTTCACT 58.996 41.667 0.00 0.00 0.00 3.41
4848 5147 6.016276 GGATACCACTTGACATGTTTCACTTT 60.016 38.462 0.00 0.00 0.00 2.66
4870 5169 5.959618 TCTCGTGTATGAAGAAACTGAGA 57.040 39.130 0.00 0.00 0.00 3.27
4902 5201 1.526887 CCAGTTGTGAAGCGTACTGTG 59.473 52.381 0.00 0.00 37.01 3.66
4914 5214 2.916111 CGTACTGTGTTGTTGCAATCC 58.084 47.619 0.59 0.00 0.00 3.01
4921 5221 4.437239 TGTGTTGTTGCAATCCGATTTTT 58.563 34.783 0.59 0.00 0.00 1.94
4922 5222 4.505922 TGTGTTGTTGCAATCCGATTTTTC 59.494 37.500 0.59 0.00 0.00 2.29
4925 5225 5.461737 TGTTGTTGCAATCCGATTTTTCTTC 59.538 36.000 0.59 0.00 0.00 2.87
4932 5232 5.644644 CAATCCGATTTTTCTTCTTCTGGG 58.355 41.667 0.00 0.00 0.00 4.45
5316 5772 2.525629 TTCCCCGTCAGAGGTGCA 60.526 61.111 0.00 0.00 0.00 4.57
5343 5799 1.199789 CACCCATTTGTGACACCGATG 59.800 52.381 2.45 7.15 38.55 3.84
5357 5813 3.195698 GATGAAGGTGGCGGCGAC 61.196 66.667 12.98 9.31 0.00 5.19
5381 5837 3.210528 GCAGCCTGCATGGAGAGC 61.211 66.667 16.85 16.53 44.26 4.09
5382 5838 2.271173 CAGCCTGCATGGAGAGCA 59.729 61.111 22.75 2.93 40.19 4.26
5383 5839 1.152943 CAGCCTGCATGGAGAGCAT 60.153 57.895 22.75 10.34 41.82 3.79
5384 5840 0.108019 CAGCCTGCATGGAGAGCATA 59.892 55.000 22.75 0.00 41.82 3.14
5385 5841 0.397187 AGCCTGCATGGAGAGCATAG 59.603 55.000 22.75 6.12 41.82 2.23
5386 5842 0.605860 GCCTGCATGGAGAGCATAGG 60.606 60.000 16.85 0.00 41.82 2.57
5387 5843 0.605860 CCTGCATGGAGAGCATAGGC 60.606 60.000 16.85 0.00 41.82 3.93
5388 5844 0.108019 CTGCATGGAGAGCATAGGCA 59.892 55.000 8.85 0.00 44.61 4.75
5389 5845 0.547553 TGCATGGAGAGCATAGGCAA 59.452 50.000 0.67 0.00 44.61 4.52
5390 5846 0.950116 GCATGGAGAGCATAGGCAAC 59.050 55.000 0.67 0.00 44.61 4.17
5391 5847 4.078380 TGCATGGAGAGCATAGGCAACT 62.078 50.000 0.67 0.00 44.18 3.16
5412 5868 4.244463 GCGGCGGCCCCATAGTTA 62.244 66.667 14.55 0.00 0.00 2.24
5413 5869 2.030562 CGGCGGCCCCATAGTTAG 59.969 66.667 14.55 0.00 0.00 2.34
5414 5870 2.281553 GGCGGCCCCATAGTTAGC 60.282 66.667 8.12 0.00 0.00 3.09
5415 5871 2.508928 GCGGCCCCATAGTTAGCA 59.491 61.111 0.00 0.00 0.00 3.49
5416 5872 1.153046 GCGGCCCCATAGTTAGCAA 60.153 57.895 0.00 0.00 0.00 3.91
5417 5873 0.750182 GCGGCCCCATAGTTAGCAAA 60.750 55.000 0.00 0.00 0.00 3.68
5418 5874 1.308998 CGGCCCCATAGTTAGCAAAG 58.691 55.000 0.00 0.00 0.00 2.77
5419 5875 1.408266 CGGCCCCATAGTTAGCAAAGT 60.408 52.381 0.00 0.00 0.00 2.66
5420 5876 2.298610 GGCCCCATAGTTAGCAAAGTC 58.701 52.381 0.00 0.00 0.00 3.01
5421 5877 1.940613 GCCCCATAGTTAGCAAAGTCG 59.059 52.381 0.00 0.00 0.00 4.18
5422 5878 2.679930 GCCCCATAGTTAGCAAAGTCGT 60.680 50.000 0.00 0.00 0.00 4.34
5423 5879 2.936498 CCCCATAGTTAGCAAAGTCGTG 59.064 50.000 0.00 0.00 0.00 4.35
5424 5880 2.936498 CCCATAGTTAGCAAAGTCGTGG 59.064 50.000 0.00 0.00 0.00 4.94
5425 5881 2.351726 CCATAGTTAGCAAAGTCGTGGC 59.648 50.000 0.00 0.00 0.00 5.01
5426 5882 1.705256 TAGTTAGCAAAGTCGTGGCG 58.295 50.000 0.00 0.00 0.00 5.69
5427 5883 1.154469 GTTAGCAAAGTCGTGGCGC 60.154 57.895 0.00 0.00 0.00 6.53
5428 5884 2.322081 TTAGCAAAGTCGTGGCGCC 61.322 57.895 22.73 22.73 0.00 6.53
5429 5885 2.725203 TTAGCAAAGTCGTGGCGCCT 62.725 55.000 29.70 2.88 0.00 5.52
5430 5886 4.389576 GCAAAGTCGTGGCGCCTG 62.390 66.667 29.70 20.31 0.00 4.85
5431 5887 3.726517 CAAAGTCGTGGCGCCTGG 61.727 66.667 29.70 19.30 0.00 4.45
5460 5916 4.269523 GCCTGCAGGTGTGGGTCA 62.270 66.667 32.81 0.00 37.57 4.02
5461 5917 2.759114 CCTGCAGGTGTGGGTCAT 59.241 61.111 25.53 0.00 0.00 3.06
5462 5918 1.377725 CCTGCAGGTGTGGGTCATC 60.378 63.158 25.53 0.00 0.00 2.92
5463 5919 1.376086 CTGCAGGTGTGGGTCATCA 59.624 57.895 5.57 0.00 0.00 3.07
5464 5920 0.034767 CTGCAGGTGTGGGTCATCAT 60.035 55.000 5.57 0.00 0.00 2.45
5465 5921 0.035152 TGCAGGTGTGGGTCATCATC 60.035 55.000 0.00 0.00 0.00 2.92
5466 5922 0.749454 GCAGGTGTGGGTCATCATCC 60.749 60.000 0.00 0.00 0.00 3.51
5467 5923 0.914644 CAGGTGTGGGTCATCATCCT 59.085 55.000 0.00 0.00 0.00 3.24
5468 5924 1.134280 CAGGTGTGGGTCATCATCCTC 60.134 57.143 0.00 0.00 0.00 3.71
5469 5925 0.911769 GGTGTGGGTCATCATCCTCA 59.088 55.000 0.00 0.00 0.00 3.86
5470 5926 1.134280 GGTGTGGGTCATCATCCTCAG 60.134 57.143 0.00 0.00 0.00 3.35
5471 5927 0.543277 TGTGGGTCATCATCCTCAGC 59.457 55.000 0.00 0.00 0.00 4.26
5472 5928 0.179034 GTGGGTCATCATCCTCAGCC 60.179 60.000 0.00 0.00 0.00 4.85
5473 5929 1.070445 GGGTCATCATCCTCAGCCG 59.930 63.158 0.00 0.00 0.00 5.52
5474 5930 1.596477 GGTCATCATCCTCAGCCGC 60.596 63.158 0.00 0.00 0.00 6.53
5475 5931 1.953138 GTCATCATCCTCAGCCGCG 60.953 63.158 0.00 0.00 0.00 6.46
5476 5932 2.664185 CATCATCCTCAGCCGCGG 60.664 66.667 24.05 24.05 0.00 6.46
5477 5933 4.615815 ATCATCCTCAGCCGCGGC 62.616 66.667 42.34 42.34 42.33 6.53
5494 5950 4.598894 CGAGGATCCAGCGGCCTG 62.599 72.222 15.82 0.00 38.85 4.85
5495 5951 4.925861 GAGGATCCAGCGGCCTGC 62.926 72.222 15.82 11.02 46.98 4.85
5592 6048 1.541310 GGTGTGGGTCATCGTCCTCA 61.541 60.000 0.00 0.00 0.00 3.86
5597 6053 2.711922 GGTCATCGTCCTCAGCCGT 61.712 63.158 0.00 0.00 0.00 5.68
5622 6078 1.401552 ACGGCGAATCAATGGTGAATG 59.598 47.619 16.62 0.00 37.30 2.67
5623 6079 1.843992 GGCGAATCAATGGTGAATGC 58.156 50.000 0.00 0.00 37.30 3.56
5624 6080 1.469917 GCGAATCAATGGTGAATGCG 58.530 50.000 0.00 0.00 37.30 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.872113 TTTTTGGCCAACTAAAACATGATTT 57.128 28.000 20.35 2.25 30.68 2.17
103 105 4.066646 TGGTTTGAGATCGAACTGAACA 57.933 40.909 15.66 2.33 39.59 3.18
104 106 4.452455 ACATGGTTTGAGATCGAACTGAAC 59.548 41.667 0.00 5.09 39.59 3.18
105 107 4.452114 CACATGGTTTGAGATCGAACTGAA 59.548 41.667 0.00 0.00 39.59 3.02
106 108 3.996363 CACATGGTTTGAGATCGAACTGA 59.004 43.478 0.00 0.00 39.59 3.41
108 110 4.008074 ACACATGGTTTGAGATCGAACT 57.992 40.909 11.73 0.00 39.59 3.01
109 111 4.749245 AACACATGGTTTGAGATCGAAC 57.251 40.909 0.00 4.61 35.82 3.95
231 267 8.511321 CCTTTTTGTACTGCATCTATAAACACA 58.489 33.333 0.00 0.00 0.00 3.72
253 289 1.988846 CCTCTTCAGTTCTCCCCCTTT 59.011 52.381 0.00 0.00 0.00 3.11
330 368 6.267471 TGCTTCAACAAATTGATCTAAAGGGT 59.733 34.615 0.00 0.00 44.36 4.34
408 446 0.404040 AAAGAAGGGGATCCAACGCA 59.596 50.000 15.23 0.00 34.83 5.24
411 449 2.084546 CACGAAAGAAGGGGATCCAAC 58.915 52.381 15.23 5.77 34.83 3.77
466 504 1.149854 ACGTTTCAACCCCTCCCAC 59.850 57.895 0.00 0.00 0.00 4.61
476 514 2.494530 GCTTGCCCCCACGTTTCAA 61.495 57.895 0.00 0.00 0.00 2.69
479 517 4.572571 TCGCTTGCCCCCACGTTT 62.573 61.111 0.00 0.00 0.00 3.60
535 607 1.190833 TGCAACGCCCAATCCCAAAT 61.191 50.000 0.00 0.00 0.00 2.32
550 622 2.351253 CCATCAAACCGAAACGATGCAA 60.351 45.455 0.00 0.00 35.08 4.08
558 630 0.250553 AGGCGACCATCAAACCGAAA 60.251 50.000 0.00 0.00 0.00 3.46
559 631 0.953471 CAGGCGACCATCAAACCGAA 60.953 55.000 0.00 0.00 0.00 4.30
642 737 8.491152 TCTATAGTAAGATGTACGCGTTTAGTC 58.509 37.037 20.78 11.23 0.00 2.59
647 742 5.237996 TGCTCTATAGTAAGATGTACGCGTT 59.762 40.000 20.78 0.00 0.00 4.84
695 790 9.662545 CGAGCATGACATATCTAATATCTGTAG 57.337 37.037 0.00 0.00 0.00 2.74
696 791 9.396022 TCGAGCATGACATATCTAATATCTGTA 57.604 33.333 0.00 0.00 0.00 2.74
697 792 8.286191 TCGAGCATGACATATCTAATATCTGT 57.714 34.615 0.00 0.00 0.00 3.41
698 793 7.861872 CCTCGAGCATGACATATCTAATATCTG 59.138 40.741 6.99 0.00 0.00 2.90
699 794 7.559533 ACCTCGAGCATGACATATCTAATATCT 59.440 37.037 6.99 0.00 0.00 1.98
700 795 7.711846 ACCTCGAGCATGACATATCTAATATC 58.288 38.462 6.99 0.00 0.00 1.63
701 796 7.652524 ACCTCGAGCATGACATATCTAATAT 57.347 36.000 6.99 0.00 0.00 1.28
702 797 7.363007 GGAACCTCGAGCATGACATATCTAATA 60.363 40.741 6.99 0.00 0.00 0.98
703 798 5.991933 ACCTCGAGCATGACATATCTAAT 57.008 39.130 6.99 0.00 0.00 1.73
704 799 5.279006 GGAACCTCGAGCATGACATATCTAA 60.279 44.000 6.99 0.00 0.00 2.10
705 800 4.218635 GGAACCTCGAGCATGACATATCTA 59.781 45.833 6.99 0.00 0.00 1.98
706 801 3.006323 GGAACCTCGAGCATGACATATCT 59.994 47.826 6.99 0.00 0.00 1.98
707 802 3.006323 AGGAACCTCGAGCATGACATATC 59.994 47.826 6.99 0.00 0.00 1.63
708 803 2.968574 AGGAACCTCGAGCATGACATAT 59.031 45.455 6.99 0.00 0.00 1.78
709 804 2.388735 AGGAACCTCGAGCATGACATA 58.611 47.619 6.99 0.00 0.00 2.29
710 805 1.198713 AGGAACCTCGAGCATGACAT 58.801 50.000 6.99 0.00 0.00 3.06
758 854 9.003658 AGAATACGATCTTGTTTGTCATTTCTT 57.996 29.630 0.00 0.00 0.00 2.52
786 882 1.712350 CGTGGACTCGTTGTTAGTTCG 59.288 52.381 0.00 0.00 0.00 3.95
792 888 2.589798 TTTCTCGTGGACTCGTTGTT 57.410 45.000 0.00 0.00 0.00 2.83
795 891 2.035449 TGTGATTTCTCGTGGACTCGTT 59.965 45.455 0.00 0.00 0.00 3.85
861 957 3.661648 GGGCAGCCAAAGGGAGGA 61.662 66.667 15.19 0.00 35.59 3.71
1155 1252 2.442272 TAGGAGAGTGGAGCGGCC 60.442 66.667 0.00 0.00 37.10 6.13
1224 1321 0.610232 CAAGGTCTGGGAGGGCAAAG 60.610 60.000 0.00 0.00 0.00 2.77
1227 1324 2.935481 CCAAGGTCTGGGAGGGCA 60.935 66.667 0.00 0.00 42.17 5.36
1228 1325 4.432741 GCCAAGGTCTGGGAGGGC 62.433 72.222 0.00 0.00 46.54 5.19
1473 1570 0.543749 CCTTCTTCTTGGCCTCCGAT 59.456 55.000 3.32 0.00 0.00 4.18
1527 1624 4.223320 CGCAAGCTTCTTTAAGAAACCA 57.777 40.909 8.82 0.00 33.19 3.67
1686 1783 4.202223 GGCACTATTCCCAGTTCGATTCTA 60.202 45.833 0.00 0.00 0.00 2.10
1776 1873 5.163395 GGAATTTACCCAACCAACAAGTTCA 60.163 40.000 0.00 0.00 0.00 3.18
1797 1894 6.933514 TCACTGAGCATATACATATGGGAA 57.066 37.500 7.80 0.00 40.31 3.97
1801 1898 9.473640 GGATACATCACTGAGCATATACATATG 57.526 37.037 0.00 0.00 42.30 1.78
1802 1899 8.646004 GGGATACATCACTGAGCATATACATAT 58.354 37.037 0.00 0.00 39.74 1.78
1803 1900 7.841222 AGGGATACATCACTGAGCATATACATA 59.159 37.037 0.00 0.00 39.55 2.29
1804 1901 6.671340 AGGGATACATCACTGAGCATATACAT 59.329 38.462 0.00 0.00 39.55 2.29
1805 1902 6.019108 AGGGATACATCACTGAGCATATACA 58.981 40.000 0.00 0.00 39.55 2.29
1816 1913 3.657610 TGGACATCAGGGATACATCACT 58.342 45.455 0.00 0.00 42.40 3.41
1817 1914 4.573900 GATGGACATCAGGGATACATCAC 58.426 47.826 7.40 0.00 37.74 3.06
1818 1915 3.259123 CGATGGACATCAGGGATACATCA 59.741 47.826 12.33 0.00 37.69 3.07
1819 1916 3.854666 CGATGGACATCAGGGATACATC 58.145 50.000 12.33 0.00 37.69 3.06
1820 1917 2.027745 GCGATGGACATCAGGGATACAT 60.028 50.000 12.33 0.00 37.69 2.29
1835 1932 0.463295 AGTCAATGAGCAGGCGATGG 60.463 55.000 0.00 0.00 0.00 3.51
1837 1934 1.209019 AGAAGTCAATGAGCAGGCGAT 59.791 47.619 0.00 0.00 0.00 4.58
1838 1935 0.610174 AGAAGTCAATGAGCAGGCGA 59.390 50.000 0.00 0.00 0.00 5.54
1873 1971 6.743575 AGTATTGGCAATGTTCTAAGTGTC 57.256 37.500 22.57 0.00 0.00 3.67
1889 2077 7.389232 TCATCAGCACCATATAGAAGTATTGG 58.611 38.462 0.00 0.00 0.00 3.16
1890 2078 7.548427 CCTCATCAGCACCATATAGAAGTATTG 59.452 40.741 0.00 0.00 0.00 1.90
1894 2082 4.904251 ACCTCATCAGCACCATATAGAAGT 59.096 41.667 0.00 0.00 0.00 3.01
1901 2089 1.878211 TGGACCTCATCAGCACCATA 58.122 50.000 0.00 0.00 0.00 2.74
1959 2147 5.703130 GCTTTTCTCTGGTGACATAAACTCT 59.297 40.000 0.00 0.00 41.51 3.24
1965 2153 4.890158 TCAGCTTTTCTCTGGTGACATA 57.110 40.909 0.00 0.00 41.51 2.29
1972 2160 4.070716 ACAATCAGTCAGCTTTTCTCTGG 58.929 43.478 0.00 0.00 32.63 3.86
1973 2161 5.686159 AACAATCAGTCAGCTTTTCTCTG 57.314 39.130 0.00 0.00 0.00 3.35
2031 2220 6.647895 GGGAAAAGTGAGTTACGATTGTCTAA 59.352 38.462 0.00 0.00 0.00 2.10
2036 2225 5.941948 AAGGGAAAAGTGAGTTACGATTG 57.058 39.130 0.00 0.00 0.00 2.67
2040 2229 5.744666 TCAAAAGGGAAAAGTGAGTTACG 57.255 39.130 0.00 0.00 0.00 3.18
2069 2258 5.493809 CTCCCTTTTTACGGAACCATAGAA 58.506 41.667 0.00 0.00 0.00 2.10
2071 2260 4.196971 CCTCCCTTTTTACGGAACCATAG 58.803 47.826 0.00 0.00 0.00 2.23
2083 2272 4.112634 TGAAGTATGTGCCTCCCTTTTT 57.887 40.909 0.00 0.00 0.00 1.94
2130 2321 8.801715 ATTCCGATAACATGACAATAATTTGC 57.198 30.769 0.00 0.00 36.22 3.68
2136 2327 7.011950 GTGGACAATTCCGATAACATGACAATA 59.988 37.037 0.00 0.00 46.37 1.90
2142 2333 5.756195 ATGTGGACAATTCCGATAACATG 57.244 39.130 0.00 0.00 46.37 3.21
2145 2336 6.093495 TCAGAAATGTGGACAATTCCGATAAC 59.907 38.462 4.32 0.00 46.37 1.89
2150 2345 4.395854 TGATCAGAAATGTGGACAATTCCG 59.604 41.667 4.32 0.00 46.37 4.30
2152 2347 6.860080 ACATGATCAGAAATGTGGACAATTC 58.140 36.000 0.00 0.09 35.71 2.17
2162 2357 7.687445 TCGTACATCAAACATGATCAGAAATG 58.313 34.615 0.00 0.00 0.00 2.32
2163 2358 7.848223 TCGTACATCAAACATGATCAGAAAT 57.152 32.000 0.00 0.00 0.00 2.17
2164 2359 7.665561 TTCGTACATCAAACATGATCAGAAA 57.334 32.000 0.00 0.00 0.00 2.52
2165 2360 7.387673 AGTTTCGTACATCAAACATGATCAGAA 59.612 33.333 0.00 0.00 35.33 3.02
2166 2361 6.873605 AGTTTCGTACATCAAACATGATCAGA 59.126 34.615 0.00 0.00 35.33 3.27
2167 2362 6.957635 CAGTTTCGTACATCAAACATGATCAG 59.042 38.462 0.00 0.00 35.33 2.90
2168 2363 6.128309 CCAGTTTCGTACATCAAACATGATCA 60.128 38.462 0.00 0.00 35.33 2.92
2169 2364 6.250819 CCAGTTTCGTACATCAAACATGATC 58.749 40.000 0.00 0.00 35.33 2.92
2170 2365 5.391950 GCCAGTTTCGTACATCAAACATGAT 60.392 40.000 0.00 0.00 35.33 2.45
2171 2366 4.083537 GCCAGTTTCGTACATCAAACATGA 60.084 41.667 0.00 0.00 35.33 3.07
2172 2367 4.158384 GCCAGTTTCGTACATCAAACATG 58.842 43.478 12.27 0.00 35.33 3.21
2173 2368 3.818210 TGCCAGTTTCGTACATCAAACAT 59.182 39.130 12.27 0.00 35.33 2.71
2174 2369 3.206964 TGCCAGTTTCGTACATCAAACA 58.793 40.909 12.27 0.00 35.33 2.83
2175 2370 3.889196 TGCCAGTTTCGTACATCAAAC 57.111 42.857 0.00 0.00 33.42 2.93
2176 2371 4.576873 TCTTTGCCAGTTTCGTACATCAAA 59.423 37.500 0.00 0.00 0.00 2.69
2177 2372 4.130857 TCTTTGCCAGTTTCGTACATCAA 58.869 39.130 0.00 0.00 0.00 2.57
2178 2373 3.734463 TCTTTGCCAGTTTCGTACATCA 58.266 40.909 0.00 0.00 0.00 3.07
2179 2374 4.742438 TTCTTTGCCAGTTTCGTACATC 57.258 40.909 0.00 0.00 0.00 3.06
2180 2375 6.811253 TTATTCTTTGCCAGTTTCGTACAT 57.189 33.333 0.00 0.00 0.00 2.29
2181 2376 6.811253 ATTATTCTTTGCCAGTTTCGTACA 57.189 33.333 0.00 0.00 0.00 2.90
2182 2377 7.270579 GTCAATTATTCTTTGCCAGTTTCGTAC 59.729 37.037 0.00 0.00 0.00 3.67
2183 2378 7.174253 AGTCAATTATTCTTTGCCAGTTTCGTA 59.826 33.333 0.00 0.00 0.00 3.43
2184 2379 6.016276 AGTCAATTATTCTTTGCCAGTTTCGT 60.016 34.615 0.00 0.00 0.00 3.85
2185 2380 6.381801 AGTCAATTATTCTTTGCCAGTTTCG 58.618 36.000 0.00 0.00 0.00 3.46
2186 2381 7.653311 ACAAGTCAATTATTCTTTGCCAGTTTC 59.347 33.333 0.00 0.00 0.00 2.78
2187 2382 7.500141 ACAAGTCAATTATTCTTTGCCAGTTT 58.500 30.769 0.00 0.00 0.00 2.66
2188 2383 7.054491 ACAAGTCAATTATTCTTTGCCAGTT 57.946 32.000 0.00 0.00 0.00 3.16
2189 2384 6.265196 TGACAAGTCAATTATTCTTTGCCAGT 59.735 34.615 0.00 0.00 36.53 4.00
2190 2385 6.680810 TGACAAGTCAATTATTCTTTGCCAG 58.319 36.000 0.00 0.00 36.53 4.85
2191 2386 6.647334 TGACAAGTCAATTATTCTTTGCCA 57.353 33.333 0.00 0.00 36.53 4.92
2192 2387 6.753744 GGATGACAAGTCAATTATTCTTTGCC 59.246 38.462 7.02 0.00 43.58 4.52
2193 2388 7.542025 AGGATGACAAGTCAATTATTCTTTGC 58.458 34.615 7.02 0.00 43.58 3.68
2194 2389 8.186821 GGAGGATGACAAGTCAATTATTCTTTG 58.813 37.037 7.02 0.00 43.58 2.77
2195 2390 7.890127 TGGAGGATGACAAGTCAATTATTCTTT 59.110 33.333 7.02 0.00 43.58 2.52
2196 2391 7.405292 TGGAGGATGACAAGTCAATTATTCTT 58.595 34.615 7.02 0.00 43.58 2.52
2197 2392 6.962182 TGGAGGATGACAAGTCAATTATTCT 58.038 36.000 7.02 0.00 43.58 2.40
2198 2393 7.500227 TGATGGAGGATGACAAGTCAATTATTC 59.500 37.037 7.02 0.00 43.58 1.75
2199 2394 7.348815 TGATGGAGGATGACAAGTCAATTATT 58.651 34.615 7.02 0.00 43.58 1.40
2200 2395 6.903516 TGATGGAGGATGACAAGTCAATTAT 58.096 36.000 7.02 0.00 43.58 1.28
2201 2396 6.312141 TGATGGAGGATGACAAGTCAATTA 57.688 37.500 7.02 0.00 43.58 1.40
2202 2397 5.183530 TGATGGAGGATGACAAGTCAATT 57.816 39.130 7.02 0.00 43.58 2.32
2203 2398 4.849813 TGATGGAGGATGACAAGTCAAT 57.150 40.909 7.02 0.00 43.58 2.57
2204 2399 4.225717 TCATGATGGAGGATGACAAGTCAA 59.774 41.667 7.02 0.00 43.58 3.18
2205 2400 3.776417 TCATGATGGAGGATGACAAGTCA 59.224 43.478 5.24 5.24 44.59 3.41
2206 2401 4.141756 ACTCATGATGGAGGATGACAAGTC 60.142 45.833 0.00 0.00 39.27 3.01
2207 2402 3.779183 ACTCATGATGGAGGATGACAAGT 59.221 43.478 0.00 0.00 39.27 3.16
2208 2403 4.418973 ACTCATGATGGAGGATGACAAG 57.581 45.455 0.00 0.00 39.27 3.16
2209 2404 4.716287 TGTACTCATGATGGAGGATGACAA 59.284 41.667 0.00 0.00 39.27 3.18
2210 2405 4.289245 TGTACTCATGATGGAGGATGACA 58.711 43.478 0.00 0.00 39.27 3.58
2211 2406 4.944619 TGTACTCATGATGGAGGATGAC 57.055 45.455 0.00 0.00 39.27 3.06
2225 2420 8.892723 GGACAATGTAATCAAATCATGTACTCA 58.107 33.333 0.00 0.00 0.00 3.41
2226 2421 8.345565 GGGACAATGTAATCAAATCATGTACTC 58.654 37.037 0.00 0.00 0.00 2.59
2227 2422 8.055181 AGGGACAATGTAATCAAATCATGTACT 58.945 33.333 0.00 0.00 0.00 2.73
2228 2423 8.225603 AGGGACAATGTAATCAAATCATGTAC 57.774 34.615 0.00 0.00 0.00 2.90
2230 2425 8.853126 CATAGGGACAATGTAATCAAATCATGT 58.147 33.333 0.00 0.00 0.00 3.21
2235 2430 8.821686 TGTTCATAGGGACAATGTAATCAAAT 57.178 30.769 0.00 0.00 0.00 2.32
2278 2473 3.005791 GGAGTTCCCATCAAACCTGTTTG 59.994 47.826 14.99 14.99 41.86 2.93
2303 2498 1.462670 GTGACAAGCTCAGCAACTAGC 59.537 52.381 0.00 0.00 46.19 3.42
2345 2540 0.098728 CGCCATCCTTTACCGCAAAG 59.901 55.000 1.79 1.79 42.90 2.77
2429 2624 6.230472 TGCAGAGCGGATATACATGTTAAAT 58.770 36.000 2.30 0.00 0.00 1.40
2579 2774 3.578716 TGAGGGAGTAGAAGTGAAGGTTG 59.421 47.826 0.00 0.00 0.00 3.77
2588 2783 6.800072 ATTTAGGAACTGAGGGAGTAGAAG 57.200 41.667 0.00 0.00 41.52 2.85
2590 2785 9.589461 CTTATATTTAGGAACTGAGGGAGTAGA 57.411 37.037 0.00 0.00 41.52 2.59
2591 2786 8.308207 GCTTATATTTAGGAACTGAGGGAGTAG 58.692 40.741 0.00 0.00 41.52 2.57
2625 2820 7.179516 TCCGTATGTAGCCCATATTGAAATCTA 59.820 37.037 0.00 0.00 38.29 1.98
2632 2827 3.262420 GCTCCGTATGTAGCCCATATTG 58.738 50.000 0.00 0.00 38.29 1.90
2640 2835 2.290641 CCCATTTTGCTCCGTATGTAGC 59.709 50.000 0.00 0.00 39.25 3.58
2731 2926 7.014038 TCCCTCCGTTTCTACATATAAGTCTTC 59.986 40.741 0.00 0.00 0.00 2.87
2733 2928 6.371278 TCCCTCCGTTTCTACATATAAGTCT 58.629 40.000 0.00 0.00 0.00 3.24
2735 2930 6.134754 ACTCCCTCCGTTTCTACATATAAGT 58.865 40.000 0.00 0.00 0.00 2.24
2743 2938 6.705863 TCTTATTACTCCCTCCGTTTCTAC 57.294 41.667 0.00 0.00 0.00 2.59
2822 3017 3.056536 GCATCACACTCAGGACTGAACTA 60.057 47.826 3.35 0.00 39.39 2.24
2846 3041 4.697352 CCTTCTGAACCATCCTGTAAGTTG 59.303 45.833 0.00 0.00 0.00 3.16
2946 3141 5.220710 ACTCCTCAAAATATGATAGCGCT 57.779 39.130 17.26 17.26 37.44 5.92
2948 3143 7.482654 TTCAACTCCTCAAAATATGATAGCG 57.517 36.000 0.00 0.00 37.44 4.26
3078 3273 4.202357 TGAAATAAGCACCTCGGCATAGAT 60.202 41.667 0.00 0.00 35.83 1.98
3080 3275 3.466836 TGAAATAAGCACCTCGGCATAG 58.533 45.455 0.00 0.00 35.83 2.23
3132 3337 9.753674 ATCATTTTCACTATCAAGGAAAAGGTA 57.246 29.630 9.56 0.52 41.96 3.08
3366 3571 8.109634 ACCTACTATGAGGACATGAAAATTTGT 58.890 33.333 0.00 0.00 39.15 2.83
3391 3596 8.213518 TGTATCTGATGGCTTATGAGAAAAAC 57.786 34.615 0.00 0.00 32.64 2.43
3437 3661 5.910637 TTCTGAAACTGAAATTGCAATGC 57.089 34.783 13.82 9.08 0.00 3.56
3461 3685 2.791383 TTTCGGTTGGTGCTGAAATG 57.209 45.000 0.00 0.00 38.41 2.32
3582 3806 9.503427 GCAATTTCAATAGTACACAGGAATTAC 57.497 33.333 0.00 0.00 0.00 1.89
3620 3844 6.016555 ACACTGGAATATTTACCTTTTGGCT 58.983 36.000 0.00 0.00 45.59 4.75
3722 3946 7.716123 TGCCAAAGAAATTCAGATTTTTCACAT 59.284 29.630 0.00 0.00 35.65 3.21
3832 4056 3.118261 TCACAAGGGGATATTCAGAGTGC 60.118 47.826 0.00 0.00 0.00 4.40
3856 4080 6.268847 AGTTTACTCATGTTCTGAAGAGAGGT 59.731 38.462 10.91 4.09 32.14 3.85
3860 4084 6.203530 TGCAAGTTTACTCATGTTCTGAAGAG 59.796 38.462 4.21 4.21 32.14 2.85
3934 4161 5.004448 TGCTGAATAACCAACCGATTTACA 58.996 37.500 0.00 0.00 0.00 2.41
3935 4162 5.554822 TGCTGAATAACCAACCGATTTAC 57.445 39.130 0.00 0.00 0.00 2.01
4116 4393 1.350193 CTACTGGTGCAGCAGTTACG 58.650 55.000 45.23 31.71 34.37 3.18
4118 4395 0.684535 TGCTACTGGTGCAGCAGTTA 59.315 50.000 45.23 31.51 42.68 2.24
4173 4450 1.399744 TTGCGGTATCAGGAGGCGAT 61.400 55.000 0.00 0.00 0.00 4.58
4229 4506 6.412072 GCAGATAAATGTCAACGAAATACTGC 59.588 38.462 0.00 0.00 37.81 4.40
4232 4509 8.667987 TTTGCAGATAAATGTCAACGAAATAC 57.332 30.769 0.00 0.00 0.00 1.89
4314 4605 3.015145 GCTGGTGGGGAAGGGCTA 61.015 66.667 0.00 0.00 0.00 3.93
4337 4628 1.072648 CCTTCACCTCGGTTTTACCCA 59.927 52.381 0.00 0.00 33.75 4.51
4383 4677 1.608283 GCTGAGTTAACTTCCACCGCT 60.608 52.381 10.02 0.00 0.00 5.52
4387 4681 2.808543 CTGGTGCTGAGTTAACTTCCAC 59.191 50.000 10.02 15.45 0.00 4.02
4388 4682 2.438021 ACTGGTGCTGAGTTAACTTCCA 59.562 45.455 10.02 11.93 0.00 3.53
4389 4683 3.127425 ACTGGTGCTGAGTTAACTTCC 57.873 47.619 10.02 8.32 0.00 3.46
4401 4695 1.298014 GGCTTCTGCTACTGGTGCT 59.702 57.895 0.00 0.00 39.59 4.40
4407 4701 0.109226 GTTCGACGGCTTCTGCTACT 60.109 55.000 0.00 0.00 39.59 2.57
4443 4737 1.376037 CGAAAGAGGCCTCGGCTTT 60.376 57.895 26.95 21.07 38.98 3.51
4464 4758 5.684626 ACAGTATAAGCTTACGTTCGCATAC 59.315 40.000 8.70 6.02 0.00 2.39
4494 4788 7.834068 TTGTAGAGTGAAGCATATTGAAGTC 57.166 36.000 0.00 0.00 0.00 3.01
4513 4807 7.305763 GCGTTTTTATTTCAGGTGTGTTTGTAG 60.306 37.037 0.00 0.00 0.00 2.74
4514 4808 6.472808 GCGTTTTTATTTCAGGTGTGTTTGTA 59.527 34.615 0.00 0.00 0.00 2.41
4521 4819 4.555262 CATGGCGTTTTTATTTCAGGTGT 58.445 39.130 0.00 0.00 0.00 4.16
4524 4822 3.848726 AGCATGGCGTTTTTATTTCAGG 58.151 40.909 0.00 0.00 0.00 3.86
4549 4847 6.033091 GCACACACGCAAAAATAAGTATAACC 59.967 38.462 0.00 0.00 0.00 2.85
4559 4857 3.564511 GATACTGCACACACGCAAAAAT 58.435 40.909 0.00 0.00 42.45 1.82
4560 4858 2.287308 GGATACTGCACACACGCAAAAA 60.287 45.455 0.00 0.00 42.45 1.94
4570 4868 4.507710 GTTTGAGATCTGGATACTGCACA 58.492 43.478 0.00 0.00 35.12 4.57
4618 4916 6.591935 TCTTGAAACAACTCATCACTAAGGT 58.408 36.000 0.00 0.00 0.00 3.50
4663 4961 3.490419 CCTGGTTTCTTATAGGGACGACG 60.490 52.174 0.00 0.00 0.00 5.12
4671 4969 6.070710 GGCCCTCTATACCTGGTTTCTTATAG 60.071 46.154 3.84 5.95 0.00 1.31
4731 5029 9.796120 GATATATATGTACTGCTTGAGACCTTC 57.204 37.037 0.00 0.00 0.00 3.46
4788 5086 5.221263 ACACACACTTCTAGTAGTTCCACAG 60.221 44.000 0.00 0.00 0.00 3.66
4810 5108 4.084287 AGTGGTATCCAGACTCGTAAACA 58.916 43.478 0.00 0.00 32.34 2.83
4825 5123 6.772716 AGAAAGTGAAACATGTCAAGTGGTAT 59.227 34.615 0.00 0.00 41.43 2.73
4829 5127 5.200454 CGAGAAAGTGAAACATGTCAAGTG 58.800 41.667 0.00 0.00 41.43 3.16
4846 5145 6.641314 GTCTCAGTTTCTTCATACACGAGAAA 59.359 38.462 0.00 0.00 37.14 2.52
4848 5147 5.335740 GGTCTCAGTTTCTTCATACACGAGA 60.336 44.000 0.00 0.00 0.00 4.04
4870 5169 3.626924 AACTGGAAGCTCGCCGGT 61.627 61.111 12.93 12.93 46.76 5.28
4902 5201 5.691754 AGAAGAAAAATCGGATTGCAACAAC 59.308 36.000 0.00 0.00 0.00 3.32
4914 5214 5.693814 CAGTTCCCAGAAGAAGAAAAATCG 58.306 41.667 0.00 0.00 0.00 3.34
4921 5221 2.614259 AGAGCAGTTCCCAGAAGAAGA 58.386 47.619 0.00 0.00 0.00 2.87
4922 5222 3.415457 AAGAGCAGTTCCCAGAAGAAG 57.585 47.619 0.00 0.00 0.00 2.85
4925 5225 1.538950 GCAAAGAGCAGTTCCCAGAAG 59.461 52.381 0.00 0.00 44.79 2.85
5294 5594 3.787001 CTCTGACGGGGAAGGGGC 61.787 72.222 0.00 0.00 0.00 5.80
5295 5595 3.083997 CCTCTGACGGGGAAGGGG 61.084 72.222 0.00 0.00 0.00 4.79
5296 5596 2.284699 ACCTCTGACGGGGAAGGG 60.285 66.667 0.00 0.00 0.00 3.95
5297 5597 2.982130 CACCTCTGACGGGGAAGG 59.018 66.667 0.00 0.00 0.00 3.46
5298 5598 2.266055 GCACCTCTGACGGGGAAG 59.734 66.667 0.37 0.00 0.00 3.46
5299 5599 2.525629 TGCACCTCTGACGGGGAA 60.526 61.111 0.37 0.00 0.00 3.97
5302 5758 2.262915 GAGTGCACCTCTGACGGG 59.737 66.667 14.63 0.00 37.22 5.28
5316 5772 0.478072 TCACAAATGGGTGCCAGAGT 59.522 50.000 0.00 0.00 36.75 3.24
5325 5781 1.819928 TCATCGGTGTCACAAATGGG 58.180 50.000 5.12 0.00 0.00 4.00
5343 5799 4.814294 ATCGTCGCCGCCACCTTC 62.814 66.667 0.00 0.00 0.00 3.46
5357 5813 4.923942 ATGCAGGCTGCCGGATCG 62.924 66.667 34.58 6.85 44.23 3.69
5366 5822 0.397187 CTATGCTCTCCATGCAGGCT 59.603 55.000 0.00 0.00 44.04 4.58
5373 5829 1.142465 CCAGTTGCCTATGCTCTCCAT 59.858 52.381 0.00 0.00 38.71 3.41
5379 5835 2.276740 GCCCCAGTTGCCTATGCT 59.723 61.111 0.00 0.00 38.71 3.79
5380 5836 3.211963 CGCCCCAGTTGCCTATGC 61.212 66.667 0.00 0.00 38.26 3.14
5381 5837 2.516930 CCGCCCCAGTTGCCTATG 60.517 66.667 0.00 0.00 0.00 2.23
5382 5838 4.506255 GCCGCCCCAGTTGCCTAT 62.506 66.667 0.00 0.00 0.00 2.57
5395 5851 4.244463 TAACTATGGGGCCGCCGC 62.244 66.667 19.34 19.34 36.97 6.53
5396 5852 2.030562 CTAACTATGGGGCCGCCG 59.969 66.667 18.45 8.28 0.00 6.46
5397 5853 2.281553 GCTAACTATGGGGCCGCC 60.282 66.667 18.45 10.45 0.00 6.13
5398 5854 0.750182 TTTGCTAACTATGGGGCCGC 60.750 55.000 14.01 14.01 0.00 6.53
5399 5855 1.308998 CTTTGCTAACTATGGGGCCG 58.691 55.000 0.00 0.00 0.00 6.13
5400 5856 2.298610 GACTTTGCTAACTATGGGGCC 58.701 52.381 0.00 0.00 0.00 5.80
5401 5857 1.940613 CGACTTTGCTAACTATGGGGC 59.059 52.381 0.00 0.00 0.00 5.80
5402 5858 2.936498 CACGACTTTGCTAACTATGGGG 59.064 50.000 0.00 0.00 0.00 4.96
5403 5859 2.936498 CCACGACTTTGCTAACTATGGG 59.064 50.000 0.00 0.00 0.00 4.00
5404 5860 2.351726 GCCACGACTTTGCTAACTATGG 59.648 50.000 0.00 0.00 0.00 2.74
5405 5861 2.029244 CGCCACGACTTTGCTAACTATG 59.971 50.000 0.00 0.00 0.00 2.23
5406 5862 2.268298 CGCCACGACTTTGCTAACTAT 58.732 47.619 0.00 0.00 0.00 2.12
5407 5863 1.705256 CGCCACGACTTTGCTAACTA 58.295 50.000 0.00 0.00 0.00 2.24
5408 5864 1.566018 GCGCCACGACTTTGCTAACT 61.566 55.000 0.00 0.00 0.00 2.24
5409 5865 1.154469 GCGCCACGACTTTGCTAAC 60.154 57.895 0.00 0.00 0.00 2.34
5410 5866 2.322081 GGCGCCACGACTTTGCTAA 61.322 57.895 24.80 0.00 0.00 3.09
5411 5867 2.740826 GGCGCCACGACTTTGCTA 60.741 61.111 24.80 0.00 0.00 3.49
5412 5868 4.626081 AGGCGCCACGACTTTGCT 62.626 61.111 31.54 0.00 46.07 3.91
5413 5869 4.389576 CAGGCGCCACGACTTTGC 62.390 66.667 31.54 0.00 46.07 3.68
5414 5870 3.726517 CCAGGCGCCACGACTTTG 61.727 66.667 31.54 16.19 46.07 2.77
5443 5899 3.574074 ATGACCCACACCTGCAGGC 62.574 63.158 33.06 14.80 39.32 4.85
5444 5900 1.377725 GATGACCCACACCTGCAGG 60.378 63.158 31.60 31.60 42.17 4.85
5445 5901 0.034767 ATGATGACCCACACCTGCAG 60.035 55.000 6.78 6.78 0.00 4.41
5446 5902 0.035152 GATGATGACCCACACCTGCA 60.035 55.000 0.00 0.00 0.00 4.41
5447 5903 0.749454 GGATGATGACCCACACCTGC 60.749 60.000 0.00 0.00 0.00 4.85
5448 5904 0.914644 AGGATGATGACCCACACCTG 59.085 55.000 0.00 0.00 0.00 4.00
5449 5905 1.207791 GAGGATGATGACCCACACCT 58.792 55.000 0.00 0.00 0.00 4.00
5450 5906 0.911769 TGAGGATGATGACCCACACC 59.088 55.000 0.00 0.00 0.00 4.16
5451 5907 1.745141 GCTGAGGATGATGACCCACAC 60.745 57.143 0.00 0.00 0.00 3.82
5452 5908 0.543277 GCTGAGGATGATGACCCACA 59.457 55.000 0.00 0.00 0.00 4.17
5453 5909 0.179034 GGCTGAGGATGATGACCCAC 60.179 60.000 0.00 0.00 0.00 4.61
5454 5910 1.689243 CGGCTGAGGATGATGACCCA 61.689 60.000 0.00 0.00 0.00 4.51
5455 5911 1.070445 CGGCTGAGGATGATGACCC 59.930 63.158 0.00 0.00 0.00 4.46
5456 5912 1.596477 GCGGCTGAGGATGATGACC 60.596 63.158 0.00 0.00 0.00 4.02
5457 5913 1.953138 CGCGGCTGAGGATGATGAC 60.953 63.158 0.00 0.00 0.00 3.06
5458 5914 2.418777 CGCGGCTGAGGATGATGA 59.581 61.111 0.00 0.00 0.00 2.92
5459 5915 2.664185 CCGCGGCTGAGGATGATG 60.664 66.667 14.67 0.00 37.19 3.07
5460 5916 4.615815 GCCGCGGCTGAGGATGAT 62.616 66.667 41.71 0.00 37.19 2.45
5477 5933 4.598894 CAGGCCGCTGGATCCTCG 62.599 72.222 14.23 15.68 0.00 4.63
5478 5934 4.925861 GCAGGCCGCTGGATCCTC 62.926 72.222 14.23 3.87 37.77 3.71
5480 5936 4.575973 ATGCAGGCCGCTGGATCC 62.576 66.667 18.14 4.20 43.06 3.36
5481 5937 3.285215 CATGCAGGCCGCTGGATC 61.285 66.667 18.14 0.00 43.06 3.36
5482 5938 4.889112 CCATGCAGGCCGCTGGAT 62.889 66.667 21.55 11.25 43.06 3.41
5485 5941 4.478371 TCTCCATGCAGGCCGCTG 62.478 66.667 18.14 13.56 43.06 5.18
5486 5942 4.172512 CTCTCCATGCAGGCCGCT 62.173 66.667 18.14 4.07 43.06 5.52
5488 5944 2.387476 TATGCTCTCCATGCAGGCCG 62.387 60.000 0.00 0.00 44.04 6.13
5489 5945 0.605860 CTATGCTCTCCATGCAGGCC 60.606 60.000 0.00 0.00 44.04 5.19
5490 5946 0.605860 CCTATGCTCTCCATGCAGGC 60.606 60.000 0.00 0.00 44.04 4.85
5491 5947 0.605860 GCCTATGCTCTCCATGCAGG 60.606 60.000 0.00 0.00 44.04 4.85
5492 5948 0.108019 TGCCTATGCTCTCCATGCAG 59.892 55.000 0.00 0.00 44.04 4.41
5493 5949 0.108019 CTGCCTATGCTCTCCATGCA 59.892 55.000 0.00 0.00 44.95 3.96
5494 5950 1.235948 GCTGCCTATGCTCTCCATGC 61.236 60.000 0.00 0.00 38.71 4.06
5495 5951 0.397187 AGCTGCCTATGCTCTCCATG 59.603 55.000 0.00 0.00 35.67 3.66
5496 5952 0.397187 CAGCTGCCTATGCTCTCCAT 59.603 55.000 0.00 0.00 38.92 3.41
5497 5953 1.693152 CCAGCTGCCTATGCTCTCCA 61.693 60.000 8.66 0.00 38.92 3.86
5498 5954 1.071128 CCAGCTGCCTATGCTCTCC 59.929 63.158 8.66 0.00 38.92 3.71
5499 5955 1.071128 CCCAGCTGCCTATGCTCTC 59.929 63.158 8.66 0.00 38.92 3.20
5500 5956 2.450320 CCCCAGCTGCCTATGCTCT 61.450 63.158 8.66 0.00 38.92 4.09
5501 5957 2.112718 CCCCAGCTGCCTATGCTC 59.887 66.667 8.66 0.00 38.92 4.26
5524 5980 0.609131 CACTTTGCCAACTCCGGGAT 60.609 55.000 0.00 0.00 0.00 3.85
5525 5981 1.228124 CACTTTGCCAACTCCGGGA 60.228 57.895 0.00 0.00 0.00 5.14
5597 6053 2.125310 ATTGATTCGCCGTCCGCA 60.125 55.556 0.00 0.00 37.30 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.