AutoCloner

Multiple sequence alignment - TraesCS3B01G468700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G468700	chr3B	100.000	2261	0	0	1	2261	713969769	713967509	0.000000e+00	4176.0
1	TraesCS3B01G468700	chr3B	93.338	1561	63	11	1	1557	713989175	713987652	0.000000e+00	2268.0
2	TraesCS3B01G468700	chr3B	78.424	1358	156	65	437	1741	713392472	713391199	0.000000e+00	758.0
3	TraesCS3B01G468700	chr3D	94.529	1444	62	14	367	1807	538688044	538686615	0.000000e+00	2213.0
4	TraesCS3B01G468700	chr3D	91.324	1118	68	19	716	1830	538699825	538698734	0.000000e+00	1500.0
5	TraesCS3B01G468700	chr3D	78.877	1354	149	77	437	1747	538516249	538514990	0.000000e+00	789.0
6	TraesCS3B01G468700	chr3D	87.065	719	53	18	1	697	538700517	538699817	0.000000e+00	776.0
7	TraesCS3B01G468700	chr3D	82.772	772	92	24	873	1625	538574187	538573438	0.000000e+00	651.0
8	TraesCS3B01G468700	chr3D	85.470	351	43	5	1869	2219	538686610	538686268	2.140000e-95	359.0
9	TraesCS3B01G468700	chr3D	80.537	149	19	6	1	140	538688488	538688341	3.070000e-19	106.0
10	TraesCS3B01G468700	chr3A	92.085	1453	84	14	324	1762	674026202	674024767	0.000000e+00	2017.0
11	TraesCS3B01G468700	chr3A	89.572	959	77	14	873	1826	674061299	674060359	0.000000e+00	1195.0
12	TraesCS3B01G468700	chr3A	78.774	1305	144	72	502	1741	673923927	673922691	0.000000e+00	752.0
13	TraesCS3B01G468700	chr3A	93.394	439	28	1	390	828	674061737	674061300	0.000000e+00	649.0
14	TraesCS3B01G468700	chr3A	84.797	296	27	6	4	282	674068342	674068048	4.750000e-72	281.0
15	TraesCS3B01G468700	chr3A	77.670	206	28	12	1	195	674026691	674026493	2.370000e-20	110.0
16	TraesCS3B01G468700	chr2D	98.039	51	1	0	394	444	615472775	615472725	3.090000e-14	89.8
17	TraesCS3B01G468700	chr7A	96.078	51	1	1	2212	2261	662155547	662155597	5.180000e-12	82.4
18	TraesCS3B01G468700	chr7A	100.000	42	0	0	2220	2261	2602733	2602692	6.700000e-11	78.7
19	TraesCS3B01G468700	chr7A	97.727	44	1	0	2218	2261	25710390	25710433	2.410000e-10	76.8
20	TraesCS3B01G468700	chrUn	90.164	61	6	0	2201	2261	150118035	150117975	1.860000e-11	80.5
21	TraesCS3B01G468700	chrUn	97.674	43	1	0	2219	2261	65692651	65692693	8.660000e-10	75.0
22	TraesCS3B01G468700	chr1A	100.000	41	0	0	2221	2261	12601904	12601944	2.410000e-10	76.8
23	TraesCS3B01G468700	chr1A	95.652	46	2	0	2216	2261	549638727	549638772	8.660000e-10	75.0
24	TraesCS3B01G468700	chr2A	100.000	40	0	0	2222	2261	723214438	723214399	8.660000e-10	75.0
25	TraesCS3B01G468700	chr2A	97.222	36	1	0	409	444	745431456	745431421	6.740000e-06	62.1
26	TraesCS3B01G468700	chr4A	95.652	46	1	1	2217	2261	706187451	706187406	3.120000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G468700	chr3B	713967509	713969769	2260	True	4176.000000	4176	100.000000	1	2261	1	chr3B.!!$R2	2260
1	TraesCS3B01G468700	chr3B	713987652	713989175	1523	True	2268.000000	2268	93.338000	1	1557	1	chr3B.!!$R3	1556
2	TraesCS3B01G468700	chr3B	713391199	713392472	1273	True	758.000000	758	78.424000	437	1741	1	chr3B.!!$R1	1304
3	TraesCS3B01G468700	chr3D	538698734	538700517	1783	True	1138.000000	1500	89.194500	1	1830	2	chr3D.!!$R4	1829
4	TraesCS3B01G468700	chr3D	538686268	538688488	2220	True	892.666667	2213	86.845333	1	2219	3	chr3D.!!$R3	2218
5	TraesCS3B01G468700	chr3D	538514990	538516249	1259	True	789.000000	789	78.877000	437	1747	1	chr3D.!!$R1	1310
6	TraesCS3B01G468700	chr3D	538573438	538574187	749	True	651.000000	651	82.772000	873	1625	1	chr3D.!!$R2	752
7	TraesCS3B01G468700	chr3A	674024767	674026691	1924	True	1063.500000	2017	84.877500	1	1762	2	chr3A.!!$R3	1761
8	TraesCS3B01G468700	chr3A	674060359	674061737	1378	True	922.000000	1195	91.483000	390	1826	2	chr3A.!!$R4	1436
9	TraesCS3B01G468700	chr3A	673922691	673923927	1236	True	752.000000	752	78.774000	502	1741	1	chr3A.!!$R1	1239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
890	1120	0.935366	GCCTATCTCACGCGCACTAC	60.935	60.0	5.73	0.0	0.0	2.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2230	2547	0.031585	GTCGGCAACCCCAGTTTTTC	59.968	55.0	0.0	0.0	32.45	2.29	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
68	70	2.100216	CCAGCAATTACCGCACGC	59.900	61.111	0.00	0.00	0.00	5.34
510	721	3.318017	AGCGCATACAGAATATCCGAAC	58.682	45.455	11.47	0.00	0.00	3.95
601	818	5.320723	CGTGCATACGTGTATTTTTGTCAT	58.679	37.500	0.00	0.00	44.99	3.06
779	1001	2.776536	AGATCCACTTTGCCAGAGCTAT	59.223	45.455	0.00	0.00	40.80	2.97
829	1051	3.565307	TCCTATCCCATGGCATCAAAAC	58.435	45.455	6.09	0.00	0.00	2.43
870	1093	4.703645	TGGAATACTCTTCAGTCTGTCG	57.296	45.455	0.00	0.00	33.62	4.35
884	1114	2.353607	GTCGGCCTATCTCACGCG	60.354	66.667	3.53	3.53	0.00	6.01
887	1117	2.962253	GGCCTATCTCACGCGCAC	60.962	66.667	5.73	0.00	0.00	5.34
889	1119	1.359117	GCCTATCTCACGCGCACTA	59.641	57.895	5.73	0.00	0.00	2.74
890	1120	0.935366	GCCTATCTCACGCGCACTAC	60.935	60.000	5.73	0.00	0.00	2.73
902	1132	4.381863	CACGCGCACTACCTAGTATAAATG	59.618	45.833	5.73	0.00	34.13	2.32
1101	1359	4.021925	GTCAAGCCTGCCCCGAGT	62.022	66.667	0.00	0.00	0.00	4.18
1200	1458	1.378646	TGATGTCGACGAGAGGGCT	60.379	57.895	11.62	0.00	0.00	5.19
1225	1483	1.135603	CGTTCATACTGTCCGTCCGAA	60.136	52.381	0.00	0.00	0.00	4.30
1229	1487	0.892755	ATACTGTCCGTCCGAAAGCA	59.107	50.000	0.00	0.00	0.00	3.91
1356	1631	8.241612	TCTGGGTAGCCATGGATATATACATAT	58.758	37.037	18.40	2.93	28.03	1.78
1390	1669	2.488153	GGTACACCATGTGCTTTTCCTC	59.512	50.000	0.00	0.00	36.98	3.71
1391	1670	2.664402	ACACCATGTGCTTTTCCTCT	57.336	45.000	0.00	0.00	36.98	3.69
1442	1724	4.553330	TTGACCATAAGAGTGGGAAGAC	57.447	45.455	0.00	0.00	43.77	3.01
1448	1730	2.118403	AAGAGTGGGAAGACAGGGAA	57.882	50.000	0.00	0.00	0.00	3.97
1570	1884	4.643784	AGTTCATCTCGACCGTATAAAGGT	59.356	41.667	1.11	1.11	46.16	3.50
1718	2033	0.676782	CGTCTGGTTCCCATCCAACC	60.677	60.000	0.00	0.00	43.35	3.77
1752	2068	5.652452	GGATGAAGCACCTTACTTAAACCAT	59.348	40.000	0.00	0.00	0.00	3.55
1753	2069	6.152831	GGATGAAGCACCTTACTTAAACCATT	59.847	38.462	0.00	0.00	0.00	3.16
1789	2106	8.606830	GGTTTCCCTCTACTTATGGATTATCAT	58.393	37.037	0.00	0.00	0.00	2.45
1830	2147	5.130145	AGCTAGGTTATCTGAAATGTGCTCT	59.870	40.000	0.00	0.00	0.00	4.09
1831	2148	5.465056	GCTAGGTTATCTGAAATGTGCTCTC	59.535	44.000	0.00	0.00	0.00	3.20
1832	2149	4.437239	AGGTTATCTGAAATGTGCTCTCG	58.563	43.478	0.00	0.00	0.00	4.04
1833	2150	3.001736	GGTTATCTGAAATGTGCTCTCGC	59.998	47.826	0.00	0.00	0.00	5.03
1834	2151	2.391616	ATCTGAAATGTGCTCTCGCA	57.608	45.000	0.00	0.00	45.60	5.10
1888	2205	2.547640	AATGAGCTCGCCCATGCACT	62.548	55.000	9.64	0.00	37.32	4.40
1903	2220	3.222173	TGCACTGGCCGGATATAATTT	57.778	42.857	21.41	0.00	40.13	1.82
1905	2222	3.568007	TGCACTGGCCGGATATAATTTTC	59.432	43.478	21.41	0.00	40.13	2.29
1907	2224	3.506067	CACTGGCCGGATATAATTTTCCC	59.494	47.826	21.41	0.00	0.00	3.97
1925	2242	1.237285	CCAGTTGGAAAGGCGTGGAG	61.237	60.000	0.00	0.00	37.39	3.86
1930	2247	1.376037	GGAAAGGCGTGGAGGACTG	60.376	63.158	0.00	0.00	0.00	3.51
1936	2253	1.736586	GCGTGGAGGACTGATCGAT	59.263	57.895	0.00	0.00	0.00	3.59
1997	2314	1.678970	GCATCCCCACCCACTCAAC	60.679	63.158	0.00	0.00	0.00	3.18
2004	2321	2.526873	ACCCACTCAACGCCTCCT	60.527	61.111	0.00	0.00	0.00	3.69
2009	2326	3.003173	CTCAACGCCTCCTCCCCA	61.003	66.667	0.00	0.00	0.00	4.96
2012	2329	2.285368	AACGCCTCCTCCCCATGA	60.285	61.111	0.00	0.00	0.00	3.07
2027	2344	0.034616	CATGATTCCTCTCCCCTCGC	59.965	60.000	0.00	0.00	0.00	5.03
2048	2365	2.046023	CGCTCCATGGCCTTCACA	60.046	61.111	6.96	0.00	0.00	3.58
2058	2375	2.125350	CCTTCACAGGCTCGGCTC	60.125	66.667	0.00	0.00	31.53	4.70
2059	2376	2.654079	CCTTCACAGGCTCGGCTCT	61.654	63.158	0.00	0.00	31.53	4.09
2060	2377	1.447489	CTTCACAGGCTCGGCTCTG	60.447	63.158	10.49	10.49	34.62	3.35
2061	2378	2.849120	CTTCACAGGCTCGGCTCTGG	62.849	65.000	14.10	7.35	33.43	3.86
2103	2420	2.282462	AAGGCTTTGGCGTCCCTG	60.282	61.111	0.00	0.00	39.81	4.45
2106	2423	4.344865	GCTTTGGCGTCCCTGGGA	62.345	66.667	12.53	12.53	0.00	4.37
2133	2450	1.073199	CGTCAAGTGGGGGCTCTTT	59.927	57.895	0.00	0.00	0.00	2.52
2165	2482	4.451150	GCGACGGTCCTCCATGCA	62.451	66.667	1.91	0.00	0.00	3.96
2167	2484	1.739667	CGACGGTCCTCCATGCATA	59.260	57.895	0.00	0.00	0.00	3.14
2169	2486	1.270305	CGACGGTCCTCCATGCATATT	60.270	52.381	0.00	0.00	0.00	1.28
2181	2498	3.654178	GCATATTGCAGGTGCCTTG	57.346	52.632	8.37	0.00	44.26	3.61
2219	2536	2.513204	CGGCTGCAGTGATGGAGG	60.513	66.667	16.64	0.00	0.00	4.30
2220	2537	2.673523	GGCTGCAGTGATGGAGGT	59.326	61.111	16.64	0.00	0.00	3.85
2221	2538	1.748122	GGCTGCAGTGATGGAGGTG	60.748	63.158	16.64	0.00	0.00	4.00
2222	2539	2.404995	GCTGCAGTGATGGAGGTGC	61.405	63.158	16.64	0.00	36.42	5.01
2223	2540	1.002990	CTGCAGTGATGGAGGTGCA	60.003	57.895	5.25	0.00	43.50	4.57
2224	2541	1.302752	TGCAGTGATGGAGGTGCAC	60.303	57.895	8.80	8.80	40.93	4.57
2225	2542	1.002868	GCAGTGATGGAGGTGCACT	60.003	57.895	17.98	2.27	43.16	4.40
2226	2543	0.250234	GCAGTGATGGAGGTGCACTA	59.750	55.000	17.98	1.36	40.63	2.74
2227	2544	2.009042	GCAGTGATGGAGGTGCACTAC	61.009	57.143	17.98	10.79	40.63	2.73
2246	2563	3.986970	CAGAAAAACTGGGGTTGCC	57.013	52.632	0.00	0.00	42.39	4.52
2247	2564	0.031994	CAGAAAAACTGGGGTTGCCG	59.968	55.000	0.00	0.00	42.39	5.69
2248	2565	0.106419	AGAAAAACTGGGGTTGCCGA	60.106	50.000	0.00	0.00	35.63	5.54
2249	2566	0.031585	GAAAAACTGGGGTTGCCGAC	59.968	55.000	0.00	0.00	35.63	4.79
2250	2567	1.730451	AAAAACTGGGGTTGCCGACG	61.730	55.000	0.00	0.00	35.63	5.12
2251	2568	4.636435	AACTGGGGTTGCCGACGG	62.636	66.667	10.29	10.29	33.96	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
510	721	3.217599	TCACAAAGAGAAGATCGTCGG	57.782	47.619	2.87	0.00	0.00	4.79
601	818	8.092068	CACCATGATAATATACGGTTGGTCTTA	58.908	37.037	0.00	0.00	34.11	2.10
779	1001	3.102985	CGTGCACCCAACGAAACA	58.897	55.556	12.15	0.00	0.00	2.83
829	1051	1.522668	TTCCATGTCACTTCTTGGCG	58.477	50.000	0.00	0.00	34.12	5.69
870	1093	2.071844	TAGTGCGCGTGAGATAGGCC	62.072	60.000	8.43	0.00	36.86	5.19
884	1114	5.820404	ACCCCATTTATACTAGGTAGTGC	57.180	43.478	0.00	0.00	37.10	4.40
887	1117	7.341512	GGTAGCTACCCCATTTATACTAGGTAG	59.658	44.444	29.68	9.21	46.28	3.18
889	1119	6.021672	GGTAGCTACCCCATTTATACTAGGT	58.978	44.000	29.68	0.00	40.53	3.08
890	1120	5.126707	CGGTAGCTACCCCATTTATACTAGG	59.873	48.000	32.51	12.76	43.51	3.02
914	1148	0.302890	CGATGCTGGAATGACGAAGC	59.697	55.000	0.00	0.00	36.18	3.86
1200	1458	0.099259	CGGACAGTATGAACGCCGTA	59.901	55.000	0.00	0.00	39.69	4.02
1225	1483	1.869767	CTGCTCGTTCTTGAAGTGCTT	59.130	47.619	0.00	0.00	0.00	3.91
1229	1487	1.337071	TCGTCTGCTCGTTCTTGAAGT	59.663	47.619	0.00	0.00	0.00	3.01
1442	1724	5.582950	TGGGGATTATGTTATCTTCCCTG	57.417	43.478	6.28	0.00	44.59	4.45
1590	1904	6.983906	AAAGGAGTTCTCAACATCCAAATT	57.016	33.333	2.24	0.00	33.71	1.82
1591	1905	7.004086	TGTAAAGGAGTTCTCAACATCCAAAT	58.996	34.615	2.24	0.00	33.71	2.32
1809	2126	5.592054	CGAGAGCACATTTCAGATAACCTA	58.408	41.667	0.00	0.00	0.00	3.08
1811	2128	4.785669	CGAGAGCACATTTCAGATAACC	57.214	45.455	0.00	0.00	0.00	2.85
1847	2164	9.987272	TCATTATCTCGTTATCACATTTCAGAT	57.013	29.630	0.00	0.00	0.00	2.90
1848	2165	9.468532	CTCATTATCTCGTTATCACATTTCAGA	57.531	33.333	0.00	0.00	0.00	3.27
1849	2166	8.219769	GCTCATTATCTCGTTATCACATTTCAG	58.780	37.037	0.00	0.00	0.00	3.02
1850	2167	7.928167	AGCTCATTATCTCGTTATCACATTTCA	59.072	33.333	0.00	0.00	0.00	2.69
1851	2168	8.304202	AGCTCATTATCTCGTTATCACATTTC	57.696	34.615	0.00	0.00	0.00	2.17
1852	2169	7.115520	CGAGCTCATTATCTCGTTATCACATTT	59.884	37.037	15.40	0.00	44.95	2.32
1853	2170	6.584184	CGAGCTCATTATCTCGTTATCACATT	59.416	38.462	15.40	0.00	44.95	2.71
1854	2171	6.089476	CGAGCTCATTATCTCGTTATCACAT	58.911	40.000	15.40	0.00	44.95	3.21
1855	2172	5.452777	CGAGCTCATTATCTCGTTATCACA	58.547	41.667	15.40	0.00	44.95	3.58
1856	2173	5.983790	CGAGCTCATTATCTCGTTATCAC	57.016	43.478	15.40	0.00	44.95	3.06
1864	2181	2.344950	CATGGGCGAGCTCATTATCTC	58.655	52.381	15.40	0.00	34.41	2.75
1867	2184	0.109153	TGCATGGGCGAGCTCATTAT	59.891	50.000	15.40	0.00	45.35	1.28
1888	2205	3.139397	ACTGGGAAAATTATATCCGGCCA	59.861	43.478	2.24	0.00	36.54	5.36
1905	2222	2.268076	CCACGCCTTTCCAACTGGG	61.268	63.158	0.00	0.00	35.41	4.45
1907	2224	1.237285	CCTCCACGCCTTTCCAACTG	61.237	60.000	0.00	0.00	0.00	3.16
1925	2242	2.873472	ACGAGTACTCATCGATCAGTCC	59.127	50.000	22.37	0.00	42.76	3.85
1930	2247	2.160022	GGGCTACGAGTACTCATCGATC	59.840	54.545	22.37	7.05	42.76	3.69
1936	2253	1.035932	GCAGGGGCTACGAGTACTCA	61.036	60.000	22.37	3.22	36.96	3.41
1997	2314	1.072159	GAATCATGGGGAGGAGGCG	59.928	63.158	0.00	0.00	0.00	5.52
2004	2321	0.401979	GGGGAGAGGAATCATGGGGA	60.402	60.000	0.00	0.00	0.00	4.81
2009	2326	1.124477	GGCGAGGGGAGAGGAATCAT	61.124	60.000	0.00	0.00	0.00	2.45
2012	2329	2.840102	CGGCGAGGGGAGAGGAAT	60.840	66.667	0.00	0.00	0.00	3.01
2051	2368	3.997064	CTTGGACGCCAGAGCCGAG	62.997	68.421	0.00	0.00	33.81	4.63
2052	2369	4.069232	CTTGGACGCCAGAGCCGA	62.069	66.667	0.00	0.00	33.81	5.54
2056	2373	3.376935	ATCCGCTTGGACGCCAGAG	62.377	63.158	0.00	2.50	46.92	3.35
2057	2374	3.371097	GATCCGCTTGGACGCCAGA	62.371	63.158	0.00	0.00	46.92	3.86
2058	2375	2.892425	GATCCGCTTGGACGCCAG	60.892	66.667	0.00	0.00	46.92	4.85
2059	2376	4.467084	GGATCCGCTTGGACGCCA	62.467	66.667	0.00	0.00	46.92	5.69
2084	2401	2.597510	GGGACGCCAAAGCCTTGT	60.598	61.111	0.00	0.00	34.57	3.16
2086	2403	2.282462	CAGGGACGCCAAAGCCTT	60.282	61.111	0.00	0.00	34.57	4.35
2087	2404	4.351054	CCAGGGACGCCAAAGCCT	62.351	66.667	0.00	0.00	34.57	4.58
2106	2423	0.108329	CCCACTTGACGATTAGCCGT	60.108	55.000	0.00	0.00	46.43	5.68
2113	2430	1.201429	AAGAGCCCCCACTTGACGAT	61.201	55.000	0.00	0.00	0.00	3.73
2119	2436	2.757077	CGGAAAGAGCCCCCACTT	59.243	61.111	0.00	0.00	0.00	3.16
2120	2437	4.035102	GCGGAAAGAGCCCCCACT	62.035	66.667	0.00	0.00	0.00	4.00
2165	2482	0.397535	CCCCAAGGCACCTGCAATAT	60.398	55.000	0.00	0.00	44.36	1.28
2167	2484	2.284112	CCCCAAGGCACCTGCAAT	60.284	61.111	0.00	0.00	44.36	3.56
2169	2486	4.601794	CACCCCAAGGCACCTGCA	62.602	66.667	0.00	0.00	44.36	4.41
2202	2519	2.513204	CCTCCATCACTGCAGCCG	60.513	66.667	15.27	5.38	0.00	5.52
2207	2524	0.250234	TAGTGCACCTCCATCACTGC	59.750	55.000	14.63	0.00	40.80	4.40
2209	2526	0.905357	GGTAGTGCACCTCCATCACT	59.095	55.000	14.63	0.00	44.79	3.41
2228	2545	0.031994	CGGCAACCCCAGTTTTTCTG	59.968	55.000	0.00	0.00	43.27	3.02
2229	2546	0.106419	TCGGCAACCCCAGTTTTTCT	60.106	50.000	0.00	0.00	32.45	2.52
2230	2547	0.031585	GTCGGCAACCCCAGTTTTTC	59.968	55.000	0.00	0.00	32.45	2.29
2231	2548	1.730451	CGTCGGCAACCCCAGTTTTT	61.730	55.000	0.00	0.00	32.45	1.94
2232	2549	2.190841	CGTCGGCAACCCCAGTTTT	61.191	57.895	0.00	0.00	32.45	2.43
2233	2550	2.593436	CGTCGGCAACCCCAGTTT	60.593	61.111	0.00	0.00	32.45	2.66
2234	2551	4.636435	CCGTCGGCAACCCCAGTT	62.636	66.667	0.00	0.00	36.33	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.