Multiple sequence alignment - TraesCS3B01G468600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G468600 chr3B 100.000 2261 0 0 1 2261 713493820 713491560 0.000000e+00 4176
1 TraesCS3B01G468600 chr3B 92.932 665 40 2 1597 2261 829557526 829558183 0.000000e+00 961
2 TraesCS3B01G468600 chr3B 81.782 752 84 27 890 1601 713968875 713968137 4.190000e-162 580
3 TraesCS3B01G468600 chr3B 82.504 663 70 25 865 1488 713988339 713987684 7.100000e-150 540
4 TraesCS3B01G468600 chr3B 77.961 971 104 59 725 1601 713392247 713391293 7.210000e-140 507
5 TraesCS3B01G468600 chr3B 93.361 241 14 2 4 243 647470910 647470671 2.760000e-94 355
6 TraesCS3B01G468600 chr3D 92.476 1236 48 16 394 1595 538574660 538573436 0.000000e+00 1725
7 TraesCS3B01G468600 chr3D 82.853 764 77 26 870 1601 538699667 538698926 8.810000e-179 636
8 TraesCS3B01G468600 chr3D 81.725 777 85 33 865 1601 538687549 538686790 1.490000e-166 595
9 TraesCS3B01G468600 chr3D 77.964 953 105 60 731 1600 538516019 538515089 1.210000e-137 499
10 TraesCS3B01G468600 chr4A 94.887 665 27 3 1597 2261 596867196 596867853 0.000000e+00 1033
11 TraesCS3B01G468600 chr6D 94.737 665 27 2 1597 2261 433214145 433213489 0.000000e+00 1027
12 TraesCS3B01G468600 chr6D 93.004 243 16 1 1 243 32368653 32368412 9.930000e-94 353
13 TraesCS3B01G468600 chr2A 94.444 666 29 2 1597 2261 2338066 2337408 0.000000e+00 1018
14 TraesCS3B01G468600 chr1A 94.135 665 32 3 1597 2261 579170182 579170839 0.000000e+00 1005
15 TraesCS3B01G468600 chr1A 93.750 240 15 0 1 240 509007355 509007594 5.940000e-96 361
16 TraesCS3B01G468600 chr7D 93.835 665 34 1 1597 2261 600256834 600257491 0.000000e+00 994
17 TraesCS3B01G468600 chr7D 94.628 242 12 1 2 243 208558116 208557876 7.630000e-100 374
18 TraesCS3B01G468600 chr5A 93.684 665 35 1 1597 2261 83782006 83782663 0.000000e+00 989
19 TraesCS3B01G468600 chr5A 94.068 236 12 2 6 240 585639726 585639960 7.680000e-95 357
20 TraesCS3B01G468600 chr5A 93.333 240 15 1 1 240 696885830 696886068 9.930000e-94 353
21 TraesCS3B01G468600 chr5B 93.544 666 35 2 1597 2261 563454647 563453989 0.000000e+00 985
22 TraesCS3B01G468600 chr7B 93.544 666 29 5 1597 2261 694533571 694532919 0.000000e+00 979
23 TraesCS3B01G468600 chr3A 83.614 830 48 19 859 1601 674018123 674017295 0.000000e+00 699
24 TraesCS3B01G468600 chr3A 80.022 926 108 39 719 1601 674061441 674060550 4.130000e-172 614
25 TraesCS3B01G468600 chr3A 81.127 763 97 22 870 1601 674025640 674024894 3.260000e-158 568
26 TraesCS3B01G468600 chr3A 87.963 108 10 3 725 830 673923760 673923654 8.480000e-25 124
27 TraesCS3B01G468600 chr5D 94.583 240 12 1 1 240 70886836 70887074 9.860000e-99 370
28 TraesCS3B01G468600 chr4D 93.776 241 14 1 3 243 53753746 53753507 5.940000e-96 361
29 TraesCS3B01G468600 chr2D 93.004 243 16 1 1 243 78513312 78513071 9.930000e-94 353


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G468600 chr3B 713491560 713493820 2260 True 4176 4176 100.000 1 2261 1 chr3B.!!$R3 2260
1 TraesCS3B01G468600 chr3B 829557526 829558183 657 False 961 961 92.932 1597 2261 1 chr3B.!!$F1 664
2 TraesCS3B01G468600 chr3B 713968137 713968875 738 True 580 580 81.782 890 1601 1 chr3B.!!$R4 711
3 TraesCS3B01G468600 chr3B 713987684 713988339 655 True 540 540 82.504 865 1488 1 chr3B.!!$R5 623
4 TraesCS3B01G468600 chr3B 713391293 713392247 954 True 507 507 77.961 725 1601 1 chr3B.!!$R2 876
5 TraesCS3B01G468600 chr3D 538573436 538574660 1224 True 1725 1725 92.476 394 1595 1 chr3D.!!$R2 1201
6 TraesCS3B01G468600 chr3D 538698926 538699667 741 True 636 636 82.853 870 1601 1 chr3D.!!$R4 731
7 TraesCS3B01G468600 chr3D 538686790 538687549 759 True 595 595 81.725 865 1601 1 chr3D.!!$R3 736
8 TraesCS3B01G468600 chr3D 538515089 538516019 930 True 499 499 77.964 731 1600 1 chr3D.!!$R1 869
9 TraesCS3B01G468600 chr4A 596867196 596867853 657 False 1033 1033 94.887 1597 2261 1 chr4A.!!$F1 664
10 TraesCS3B01G468600 chr6D 433213489 433214145 656 True 1027 1027 94.737 1597 2261 1 chr6D.!!$R2 664
11 TraesCS3B01G468600 chr2A 2337408 2338066 658 True 1018 1018 94.444 1597 2261 1 chr2A.!!$R1 664
12 TraesCS3B01G468600 chr1A 579170182 579170839 657 False 1005 1005 94.135 1597 2261 1 chr1A.!!$F2 664
13 TraesCS3B01G468600 chr7D 600256834 600257491 657 False 994 994 93.835 1597 2261 1 chr7D.!!$F1 664
14 TraesCS3B01G468600 chr5A 83782006 83782663 657 False 989 989 93.684 1597 2261 1 chr5A.!!$F1 664
15 TraesCS3B01G468600 chr5B 563453989 563454647 658 True 985 985 93.544 1597 2261 1 chr5B.!!$R1 664
16 TraesCS3B01G468600 chr7B 694532919 694533571 652 True 979 979 93.544 1597 2261 1 chr7B.!!$R1 664
17 TraesCS3B01G468600 chr3A 674017295 674018123 828 True 699 699 83.614 859 1601 1 chr3A.!!$R2 742
18 TraesCS3B01G468600 chr3A 674060550 674061441 891 True 614 614 80.022 719 1601 1 chr3A.!!$R4 882
19 TraesCS3B01G468600 chr3A 674024894 674025640 746 True 568 568 81.127 870 1601 1 chr3A.!!$R3 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.03779 AAGAACTCCTCGTGCTCAGC 60.038 55.0 0.0 0.0 26.63 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2386 0.179045 GCATTACATCCGGCCTCTGT 60.179 55.0 0.0 3.95 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.745312 AAAATGGGGGAGAATTTCACTTC 57.255 39.130 0.00 0.00 0.00 3.01
25 26 2.899303 TGGGGGAGAATTTCACTTCC 57.101 50.000 0.00 0.00 32.54 3.46
27 28 2.145397 GGGGAGAATTTCACTTCCCC 57.855 55.000 20.02 20.02 45.11 4.81
28 29 2.899303 GGGAGAATTTCACTTCCCCA 57.101 50.000 9.95 0.00 36.45 4.96
29 30 2.728007 GGGAGAATTTCACTTCCCCAG 58.272 52.381 9.95 0.00 36.45 4.45
30 31 2.095461 GGAGAATTTCACTTCCCCAGC 58.905 52.381 0.00 0.00 0.00 4.85
31 32 2.095461 GAGAATTTCACTTCCCCAGCC 58.905 52.381 0.00 0.00 0.00 4.85
32 33 1.713078 AGAATTTCACTTCCCCAGCCT 59.287 47.619 0.00 0.00 0.00 4.58
33 34 2.095461 GAATTTCACTTCCCCAGCCTC 58.905 52.381 0.00 0.00 0.00 4.70
34 35 1.376649 ATTTCACTTCCCCAGCCTCT 58.623 50.000 0.00 0.00 0.00 3.69
35 36 2.038863 TTTCACTTCCCCAGCCTCTA 57.961 50.000 0.00 0.00 0.00 2.43
36 37 1.276622 TTCACTTCCCCAGCCTCTAC 58.723 55.000 0.00 0.00 0.00 2.59
37 38 0.116342 TCACTTCCCCAGCCTCTACA 59.884 55.000 0.00 0.00 0.00 2.74
38 39 0.250513 CACTTCCCCAGCCTCTACAC 59.749 60.000 0.00 0.00 0.00 2.90
39 40 0.910088 ACTTCCCCAGCCTCTACACC 60.910 60.000 0.00 0.00 0.00 4.16
40 41 0.909610 CTTCCCCAGCCTCTACACCA 60.910 60.000 0.00 0.00 0.00 4.17
41 42 0.474854 TTCCCCAGCCTCTACACCAA 60.475 55.000 0.00 0.00 0.00 3.67
42 43 1.198759 TCCCCAGCCTCTACACCAAC 61.199 60.000 0.00 0.00 0.00 3.77
43 44 1.201429 CCCCAGCCTCTACACCAACT 61.201 60.000 0.00 0.00 0.00 3.16
44 45 1.568504 CCCAGCCTCTACACCAACTA 58.431 55.000 0.00 0.00 0.00 2.24
45 46 1.482593 CCCAGCCTCTACACCAACTAG 59.517 57.143 0.00 0.00 0.00 2.57
46 47 1.482593 CCAGCCTCTACACCAACTAGG 59.517 57.143 0.00 0.00 45.67 3.02
47 48 1.482593 CAGCCTCTACACCAACTAGGG 59.517 57.143 0.00 0.00 43.89 3.53
48 49 1.361543 AGCCTCTACACCAACTAGGGA 59.638 52.381 0.00 0.00 43.89 4.20
49 50 2.022918 AGCCTCTACACCAACTAGGGAT 60.023 50.000 0.00 0.00 43.89 3.85
50 51 2.103263 GCCTCTACACCAACTAGGGATG 59.897 54.545 0.00 0.00 43.89 3.51
51 52 2.103263 CCTCTACACCAACTAGGGATGC 59.897 54.545 0.00 0.00 43.89 3.91
52 53 2.766263 CTCTACACCAACTAGGGATGCA 59.234 50.000 0.00 0.00 43.89 3.96
53 54 3.384168 TCTACACCAACTAGGGATGCAT 58.616 45.455 0.00 0.00 43.89 3.96
54 55 4.552674 TCTACACCAACTAGGGATGCATA 58.447 43.478 0.00 0.00 43.89 3.14
55 56 3.560636 ACACCAACTAGGGATGCATAC 57.439 47.619 0.00 0.00 43.89 2.39
56 57 2.158957 ACACCAACTAGGGATGCATACG 60.159 50.000 1.96 0.00 43.89 3.06
57 58 2.102420 CACCAACTAGGGATGCATACGA 59.898 50.000 1.96 0.00 43.89 3.43
58 59 2.102588 ACCAACTAGGGATGCATACGAC 59.897 50.000 1.96 0.00 43.89 4.34
59 60 2.548067 CCAACTAGGGATGCATACGACC 60.548 54.545 1.96 1.98 0.00 4.79
60 61 2.082140 ACTAGGGATGCATACGACCA 57.918 50.000 1.96 0.00 0.00 4.02
61 62 2.609747 ACTAGGGATGCATACGACCAT 58.390 47.619 1.96 0.00 0.00 3.55
62 63 2.972713 ACTAGGGATGCATACGACCATT 59.027 45.455 1.96 0.00 0.00 3.16
63 64 3.391296 ACTAGGGATGCATACGACCATTT 59.609 43.478 1.96 0.00 0.00 2.32
64 65 3.297134 AGGGATGCATACGACCATTTT 57.703 42.857 1.96 0.00 0.00 1.82
65 66 4.431416 AGGGATGCATACGACCATTTTA 57.569 40.909 1.96 0.00 0.00 1.52
66 67 4.389374 AGGGATGCATACGACCATTTTAG 58.611 43.478 1.96 0.00 0.00 1.85
67 68 4.134563 GGGATGCATACGACCATTTTAGT 58.865 43.478 1.96 0.00 0.00 2.24
68 69 5.071250 AGGGATGCATACGACCATTTTAGTA 59.929 40.000 1.96 0.00 0.00 1.82
69 70 5.938125 GGGATGCATACGACCATTTTAGTAT 59.062 40.000 1.96 0.00 0.00 2.12
70 71 7.038587 AGGGATGCATACGACCATTTTAGTATA 60.039 37.037 1.96 0.00 0.00 1.47
71 72 7.277981 GGGATGCATACGACCATTTTAGTATAG 59.722 40.741 1.96 0.00 0.00 1.31
72 73 7.277981 GGATGCATACGACCATTTTAGTATAGG 59.722 40.741 0.00 0.00 0.00 2.57
73 74 7.058023 TGCATACGACCATTTTAGTATAGGT 57.942 36.000 0.00 0.00 34.76 3.08
74 75 8.180706 TGCATACGACCATTTTAGTATAGGTA 57.819 34.615 0.00 0.00 31.57 3.08
75 76 8.084073 TGCATACGACCATTTTAGTATAGGTAC 58.916 37.037 0.00 0.00 31.57 3.34
76 77 7.543520 GCATACGACCATTTTAGTATAGGTACC 59.456 40.741 2.73 2.73 31.57 3.34
77 78 8.579006 CATACGACCATTTTAGTATAGGTACCA 58.421 37.037 15.94 0.00 31.57 3.25
78 79 7.422465 ACGACCATTTTAGTATAGGTACCAA 57.578 36.000 15.94 0.00 31.57 3.67
79 80 7.495055 ACGACCATTTTAGTATAGGTACCAAG 58.505 38.462 15.94 0.00 31.57 3.61
80 81 7.342799 ACGACCATTTTAGTATAGGTACCAAGA 59.657 37.037 15.94 0.00 31.57 3.02
81 82 8.365647 CGACCATTTTAGTATAGGTACCAAGAT 58.634 37.037 15.94 6.93 31.57 2.40
91 92 8.648693 AGTATAGGTACCAAGATAAACATGGTC 58.351 37.037 15.94 0.00 45.86 4.02
92 93 5.112129 AGGTACCAAGATAAACATGGTCC 57.888 43.478 15.94 2.87 45.86 4.46
93 94 4.788617 AGGTACCAAGATAAACATGGTCCT 59.211 41.667 15.94 4.96 45.86 3.85
94 95 5.104485 AGGTACCAAGATAAACATGGTCCTC 60.104 44.000 15.94 0.00 45.86 3.71
95 96 3.873910 ACCAAGATAAACATGGTCCTCG 58.126 45.455 0.00 0.00 45.86 4.63
96 97 3.206150 CCAAGATAAACATGGTCCTCGG 58.794 50.000 0.00 0.00 33.27 4.63
97 98 3.118408 CCAAGATAAACATGGTCCTCGGA 60.118 47.826 0.00 0.00 33.27 4.55
98 99 4.513442 CAAGATAAACATGGTCCTCGGAA 58.487 43.478 0.00 0.00 0.00 4.30
99 100 5.126067 CAAGATAAACATGGTCCTCGGAAT 58.874 41.667 0.00 0.00 0.00 3.01
100 101 5.373812 AGATAAACATGGTCCTCGGAATT 57.626 39.130 0.00 0.00 0.00 2.17
101 102 5.755849 AGATAAACATGGTCCTCGGAATTT 58.244 37.500 0.00 0.00 0.00 1.82
102 103 6.187682 AGATAAACATGGTCCTCGGAATTTT 58.812 36.000 0.00 0.00 0.00 1.82
103 104 6.663523 AGATAAACATGGTCCTCGGAATTTTT 59.336 34.615 0.00 0.00 0.00 1.94
152 153 3.416351 TGGTTCCACCACACACCA 58.584 55.556 0.00 0.00 44.79 4.17
153 154 1.691823 TGGTTCCACCACACACCAA 59.308 52.632 0.00 0.00 44.79 3.67
154 155 0.039764 TGGTTCCACCACACACCAAA 59.960 50.000 0.00 0.00 44.79 3.28
155 156 0.458260 GGTTCCACCACACACCAAAC 59.542 55.000 0.00 0.00 38.42 2.93
156 157 1.470051 GTTCCACCACACACCAAACT 58.530 50.000 0.00 0.00 0.00 2.66
157 158 1.822371 GTTCCACCACACACCAAACTT 59.178 47.619 0.00 0.00 0.00 2.66
158 159 3.018149 GTTCCACCACACACCAAACTTA 58.982 45.455 0.00 0.00 0.00 2.24
159 160 3.367646 TCCACCACACACCAAACTTAA 57.632 42.857 0.00 0.00 0.00 1.85
160 161 3.904717 TCCACCACACACCAAACTTAAT 58.095 40.909 0.00 0.00 0.00 1.40
161 162 3.886505 TCCACCACACACCAAACTTAATC 59.113 43.478 0.00 0.00 0.00 1.75
162 163 3.005367 CCACCACACACCAAACTTAATCC 59.995 47.826 0.00 0.00 0.00 3.01
163 164 3.888930 CACCACACACCAAACTTAATCCT 59.111 43.478 0.00 0.00 0.00 3.24
164 165 4.023193 CACCACACACCAAACTTAATCCTC 60.023 45.833 0.00 0.00 0.00 3.71
165 166 4.141287 CCACACACCAAACTTAATCCTCA 58.859 43.478 0.00 0.00 0.00 3.86
166 167 4.582656 CCACACACCAAACTTAATCCTCAA 59.417 41.667 0.00 0.00 0.00 3.02
167 168 5.243730 CCACACACCAAACTTAATCCTCAAT 59.756 40.000 0.00 0.00 0.00 2.57
168 169 6.432783 CCACACACCAAACTTAATCCTCAATA 59.567 38.462 0.00 0.00 0.00 1.90
169 170 7.040062 CCACACACCAAACTTAATCCTCAATAA 60.040 37.037 0.00 0.00 0.00 1.40
170 171 8.356657 CACACACCAAACTTAATCCTCAATAAA 58.643 33.333 0.00 0.00 0.00 1.40
171 172 9.088987 ACACACCAAACTTAATCCTCAATAAAT 57.911 29.630 0.00 0.00 0.00 1.40
172 173 9.357652 CACACCAAACTTAATCCTCAATAAATG 57.642 33.333 0.00 0.00 0.00 2.32
173 174 8.531146 ACACCAAACTTAATCCTCAATAAATGG 58.469 33.333 0.00 0.00 0.00 3.16
174 175 7.981225 CACCAAACTTAATCCTCAATAAATGGG 59.019 37.037 0.00 0.00 0.00 4.00
192 193 3.284336 GGAAAACCCCCGTGCATC 58.716 61.111 0.00 0.00 0.00 3.91
193 194 1.605165 GGAAAACCCCCGTGCATCA 60.605 57.895 0.00 0.00 0.00 3.07
194 195 1.584495 GAAAACCCCCGTGCATCAC 59.416 57.895 0.00 0.00 0.00 3.06
195 196 1.873270 GAAAACCCCCGTGCATCACC 61.873 60.000 0.00 0.00 0.00 4.02
196 197 2.366153 AAAACCCCCGTGCATCACCT 62.366 55.000 0.00 0.00 0.00 4.00
197 198 3.567579 AACCCCCGTGCATCACCTG 62.568 63.158 0.00 0.00 0.00 4.00
198 199 4.033776 CCCCCGTGCATCACCTGT 62.034 66.667 0.00 0.00 0.00 4.00
199 200 2.436646 CCCCGTGCATCACCTGTC 60.437 66.667 0.00 0.00 0.00 3.51
200 201 2.347114 CCCGTGCATCACCTGTCA 59.653 61.111 0.00 0.00 0.00 3.58
201 202 1.302431 CCCGTGCATCACCTGTCAA 60.302 57.895 0.00 0.00 0.00 3.18
202 203 0.677731 CCCGTGCATCACCTGTCAAT 60.678 55.000 0.00 0.00 0.00 2.57
203 204 1.167851 CCGTGCATCACCTGTCAATT 58.832 50.000 0.00 0.00 0.00 2.32
204 205 1.131126 CCGTGCATCACCTGTCAATTC 59.869 52.381 0.00 0.00 0.00 2.17
205 206 2.079158 CGTGCATCACCTGTCAATTCT 58.921 47.619 0.00 0.00 0.00 2.40
206 207 3.261580 CGTGCATCACCTGTCAATTCTA 58.738 45.455 0.00 0.00 0.00 2.10
207 208 3.308053 CGTGCATCACCTGTCAATTCTAG 59.692 47.826 0.00 0.00 0.00 2.43
208 209 4.507710 GTGCATCACCTGTCAATTCTAGA 58.492 43.478 0.00 0.00 0.00 2.43
209 210 4.937620 GTGCATCACCTGTCAATTCTAGAA 59.062 41.667 7.82 7.82 0.00 2.10
210 211 5.412594 GTGCATCACCTGTCAATTCTAGAAA 59.587 40.000 9.71 0.00 0.00 2.52
211 212 6.094603 GTGCATCACCTGTCAATTCTAGAAAT 59.905 38.462 9.71 0.00 0.00 2.17
212 213 6.660521 TGCATCACCTGTCAATTCTAGAAATT 59.339 34.615 9.71 2.07 0.00 1.82
213 214 6.971184 GCATCACCTGTCAATTCTAGAAATTG 59.029 38.462 9.71 13.63 38.60 2.32
214 215 7.148188 GCATCACCTGTCAATTCTAGAAATTGA 60.148 37.037 9.71 15.48 42.44 2.57
215 216 8.733458 CATCACCTGTCAATTCTAGAAATTGAA 58.267 33.333 21.55 14.86 45.06 2.69
216 217 8.099364 TCACCTGTCAATTCTAGAAATTGAAC 57.901 34.615 21.55 17.57 45.06 3.18
217 218 7.939039 TCACCTGTCAATTCTAGAAATTGAACT 59.061 33.333 21.55 0.68 45.06 3.01
218 219 8.233190 CACCTGTCAATTCTAGAAATTGAACTC 58.767 37.037 21.55 14.62 45.06 3.01
219 220 7.939039 ACCTGTCAATTCTAGAAATTGAACTCA 59.061 33.333 21.55 16.90 45.06 3.41
220 221 8.449397 CCTGTCAATTCTAGAAATTGAACTCAG 58.551 37.037 21.55 21.49 45.06 3.35
221 222 8.327941 TGTCAATTCTAGAAATTGAACTCAGG 57.672 34.615 21.55 0.00 45.06 3.86
222 223 7.939039 TGTCAATTCTAGAAATTGAACTCAGGT 59.061 33.333 21.55 0.00 45.06 4.00
223 224 8.447053 GTCAATTCTAGAAATTGAACTCAGGTC 58.553 37.037 21.55 10.53 45.06 3.85
224 225 8.156820 TCAATTCTAGAAATTGAACTCAGGTCA 58.843 33.333 19.38 0.00 41.92 4.02
225 226 8.954350 CAATTCTAGAAATTGAACTCAGGTCAT 58.046 33.333 9.71 0.00 39.36 3.06
226 227 9.525826 AATTCTAGAAATTGAACTCAGGTCATT 57.474 29.630 9.71 0.00 0.00 2.57
228 229 9.658799 TTCTAGAAATTGAACTCAGGTCATTAG 57.341 33.333 1.68 0.00 0.00 1.73
229 230 8.260818 TCTAGAAATTGAACTCAGGTCATTAGG 58.739 37.037 0.00 0.00 0.00 2.69
230 231 5.649831 AGAAATTGAACTCAGGTCATTAGGC 59.350 40.000 0.00 0.00 0.00 3.93
231 232 4.851639 ATTGAACTCAGGTCATTAGGCT 57.148 40.909 0.00 0.00 0.00 4.58
232 233 3.616956 TGAACTCAGGTCATTAGGCTG 57.383 47.619 0.00 0.00 0.00 4.85
233 234 2.284190 GAACTCAGGTCATTAGGCTGC 58.716 52.381 0.00 0.00 0.00 5.25
234 235 1.279496 ACTCAGGTCATTAGGCTGCA 58.721 50.000 0.50 0.00 0.00 4.41
235 236 1.065854 ACTCAGGTCATTAGGCTGCAC 60.066 52.381 0.50 0.00 0.00 4.57
236 237 0.983467 TCAGGTCATTAGGCTGCACA 59.017 50.000 0.50 0.00 0.00 4.57
237 238 1.350684 TCAGGTCATTAGGCTGCACAA 59.649 47.619 0.50 0.00 0.00 3.33
238 239 1.470098 CAGGTCATTAGGCTGCACAAC 59.530 52.381 0.50 0.00 0.00 3.32
239 240 0.811281 GGTCATTAGGCTGCACAACC 59.189 55.000 0.50 0.00 0.00 3.77
240 241 1.533625 GTCATTAGGCTGCACAACCA 58.466 50.000 0.50 0.00 0.00 3.67
241 242 1.200020 GTCATTAGGCTGCACAACCAC 59.800 52.381 0.50 0.00 0.00 4.16
242 243 1.202867 TCATTAGGCTGCACAACCACA 60.203 47.619 0.50 0.00 0.00 4.17
243 244 1.068333 CATTAGGCTGCACAACCACAC 60.068 52.381 0.50 0.00 0.00 3.82
244 245 0.106967 TTAGGCTGCACAACCACACA 60.107 50.000 0.50 0.00 0.00 3.72
245 246 0.817634 TAGGCTGCACAACCACACAC 60.818 55.000 0.50 0.00 0.00 3.82
246 247 2.412937 GCTGCACAACCACACACC 59.587 61.111 0.00 0.00 0.00 4.16
247 248 2.413963 GCTGCACAACCACACACCA 61.414 57.895 0.00 0.00 0.00 4.17
248 249 1.943116 GCTGCACAACCACACACCAA 61.943 55.000 0.00 0.00 0.00 3.67
249 250 0.101040 CTGCACAACCACACACCAAG 59.899 55.000 0.00 0.00 0.00 3.61
250 251 1.318886 TGCACAACCACACACCAAGG 61.319 55.000 0.00 0.00 0.00 3.61
251 252 1.437160 CACAACCACACACCAAGGC 59.563 57.895 0.00 0.00 0.00 4.35
252 253 1.037030 CACAACCACACACCAAGGCT 61.037 55.000 0.00 0.00 0.00 4.58
253 254 0.751643 ACAACCACACACCAAGGCTC 60.752 55.000 0.00 0.00 0.00 4.70
254 255 0.466189 CAACCACACACCAAGGCTCT 60.466 55.000 0.00 0.00 0.00 4.09
255 256 0.179018 AACCACACACCAAGGCTCTC 60.179 55.000 0.00 0.00 0.00 3.20
256 257 1.056700 ACCACACACCAAGGCTCTCT 61.057 55.000 0.00 0.00 0.00 3.10
257 258 0.109342 CCACACACCAAGGCTCTCTT 59.891 55.000 0.00 0.00 35.79 2.85
258 259 1.477558 CCACACACCAAGGCTCTCTTT 60.478 52.381 0.00 0.00 32.41 2.52
259 260 1.605710 CACACACCAAGGCTCTCTTTG 59.394 52.381 0.00 0.00 32.41 2.77
260 261 0.595095 CACACCAAGGCTCTCTTTGC 59.405 55.000 0.00 0.00 32.41 3.68
261 262 0.183492 ACACCAAGGCTCTCTTTGCA 59.817 50.000 0.00 0.00 32.41 4.08
262 263 0.879765 CACCAAGGCTCTCTTTGCAG 59.120 55.000 0.00 0.00 32.41 4.41
263 264 0.892814 ACCAAGGCTCTCTTTGCAGC 60.893 55.000 0.00 0.00 32.41 5.25
267 268 4.069869 GCTCTCTTTGCAGCCACA 57.930 55.556 0.00 0.00 0.00 4.17
268 269 1.874562 GCTCTCTTTGCAGCCACAG 59.125 57.895 0.00 0.00 0.00 3.66
269 270 1.584380 GCTCTCTTTGCAGCCACAGG 61.584 60.000 0.00 0.00 0.00 4.00
279 280 3.595819 GCCACAGGCCAGTTGATC 58.404 61.111 5.01 0.00 44.06 2.92
280 281 1.303561 GCCACAGGCCAGTTGATCA 60.304 57.895 5.01 0.00 44.06 2.92
281 282 1.310933 GCCACAGGCCAGTTGATCAG 61.311 60.000 5.01 0.00 44.06 2.90
282 283 0.325933 CCACAGGCCAGTTGATCAGA 59.674 55.000 5.01 0.00 0.00 3.27
283 284 1.446907 CACAGGCCAGTTGATCAGAC 58.553 55.000 5.01 0.00 0.00 3.51
284 285 1.002888 CACAGGCCAGTTGATCAGACT 59.997 52.381 5.01 0.10 0.00 3.24
285 286 1.277557 ACAGGCCAGTTGATCAGACTC 59.722 52.381 5.01 0.00 0.00 3.36
286 287 1.554160 CAGGCCAGTTGATCAGACTCT 59.446 52.381 5.01 0.00 0.00 3.24
287 288 2.027377 CAGGCCAGTTGATCAGACTCTT 60.027 50.000 5.01 0.00 0.00 2.85
288 289 2.235898 AGGCCAGTTGATCAGACTCTTC 59.764 50.000 5.01 0.00 0.00 2.87
289 290 2.235898 GGCCAGTTGATCAGACTCTTCT 59.764 50.000 0.00 0.00 0.00 2.85
290 291 3.449018 GGCCAGTTGATCAGACTCTTCTA 59.551 47.826 0.00 0.00 0.00 2.10
291 292 4.081420 GGCCAGTTGATCAGACTCTTCTAA 60.081 45.833 0.00 0.00 0.00 2.10
292 293 5.482908 GCCAGTTGATCAGACTCTTCTAAA 58.517 41.667 0.00 0.00 0.00 1.85
293 294 6.112058 GCCAGTTGATCAGACTCTTCTAAAT 58.888 40.000 0.00 0.00 0.00 1.40
294 295 6.036953 GCCAGTTGATCAGACTCTTCTAAATG 59.963 42.308 0.00 0.00 0.00 2.32
295 296 7.326454 CCAGTTGATCAGACTCTTCTAAATGA 58.674 38.462 0.00 0.00 0.00 2.57
296 297 7.986320 CCAGTTGATCAGACTCTTCTAAATGAT 59.014 37.037 0.00 0.00 0.00 2.45
297 298 9.381033 CAGTTGATCAGACTCTTCTAAATGATT 57.619 33.333 0.00 0.00 0.00 2.57
298 299 9.956640 AGTTGATCAGACTCTTCTAAATGATTT 57.043 29.630 0.00 0.00 0.00 2.17
321 322 4.950205 TTTTCCTGTAAGAACTCCTCGT 57.050 40.909 0.00 0.00 34.07 4.18
322 323 3.936372 TTCCTGTAAGAACTCCTCGTG 57.064 47.619 0.00 0.00 34.07 4.35
323 324 1.544691 TCCTGTAAGAACTCCTCGTGC 59.455 52.381 0.00 0.00 34.07 5.34
324 325 1.546476 CCTGTAAGAACTCCTCGTGCT 59.454 52.381 0.00 0.00 34.07 4.40
325 326 2.416162 CCTGTAAGAACTCCTCGTGCTC 60.416 54.545 0.00 0.00 34.07 4.26
326 327 2.229062 CTGTAAGAACTCCTCGTGCTCA 59.771 50.000 0.00 0.00 34.07 4.26
327 328 2.229062 TGTAAGAACTCCTCGTGCTCAG 59.771 50.000 0.00 0.00 26.63 3.35
328 329 0.037790 AAGAACTCCTCGTGCTCAGC 60.038 55.000 0.00 0.00 26.63 4.26
329 330 1.803519 GAACTCCTCGTGCTCAGCG 60.804 63.158 0.00 0.00 0.00 5.18
330 331 2.479412 GAACTCCTCGTGCTCAGCGT 62.479 60.000 0.00 0.00 0.00 5.07
331 332 2.505777 CTCCTCGTGCTCAGCGTG 60.506 66.667 0.00 0.00 0.00 5.34
332 333 3.274455 CTCCTCGTGCTCAGCGTGT 62.274 63.158 0.00 0.00 0.00 4.49
333 334 3.108289 CCTCGTGCTCAGCGTGTG 61.108 66.667 0.00 0.00 0.00 3.82
334 335 3.771491 CTCGTGCTCAGCGTGTGC 61.771 66.667 0.00 5.48 43.24 4.57
337 338 2.974698 GTGCTCAGCGTGTGCCTT 60.975 61.111 0.00 0.00 44.31 4.35
338 339 2.666190 TGCTCAGCGTGTGCCTTC 60.666 61.111 0.00 0.00 44.31 3.46
339 340 2.666190 GCTCAGCGTGTGCCTTCA 60.666 61.111 0.00 0.00 44.31 3.02
340 341 2.037136 GCTCAGCGTGTGCCTTCAT 61.037 57.895 0.00 0.00 44.31 2.57
341 342 1.975363 GCTCAGCGTGTGCCTTCATC 61.975 60.000 0.00 0.00 44.31 2.92
342 343 0.390866 CTCAGCGTGTGCCTTCATCT 60.391 55.000 0.00 0.00 44.31 2.90
343 344 0.671472 TCAGCGTGTGCCTTCATCTG 60.671 55.000 0.00 0.00 44.31 2.90
344 345 0.671472 CAGCGTGTGCCTTCATCTGA 60.671 55.000 0.00 0.00 44.31 3.27
345 346 0.390866 AGCGTGTGCCTTCATCTGAG 60.391 55.000 0.00 0.00 44.31 3.35
346 347 1.975363 GCGTGTGCCTTCATCTGAGC 61.975 60.000 0.00 0.00 33.98 4.26
347 348 0.671472 CGTGTGCCTTCATCTGAGCA 60.671 55.000 0.00 0.00 0.00 4.26
350 351 3.545724 TGCCTTCATCTGAGCACTG 57.454 52.632 0.00 0.00 0.00 3.66
351 352 0.978907 TGCCTTCATCTGAGCACTGA 59.021 50.000 0.00 0.00 0.00 3.41
352 353 1.348696 TGCCTTCATCTGAGCACTGAA 59.651 47.619 0.00 0.00 0.00 3.02
353 354 2.224597 TGCCTTCATCTGAGCACTGAAA 60.225 45.455 0.00 0.00 0.00 2.69
354 355 2.816087 GCCTTCATCTGAGCACTGAAAA 59.184 45.455 0.00 0.00 0.00 2.29
355 356 3.254166 GCCTTCATCTGAGCACTGAAAAA 59.746 43.478 0.00 0.00 0.00 1.94
356 357 4.791974 CCTTCATCTGAGCACTGAAAAAC 58.208 43.478 0.00 0.00 0.00 2.43
357 358 4.518211 CCTTCATCTGAGCACTGAAAAACT 59.482 41.667 0.00 0.00 0.00 2.66
358 359 5.702670 CCTTCATCTGAGCACTGAAAAACTA 59.297 40.000 0.00 0.00 0.00 2.24
359 360 6.128336 CCTTCATCTGAGCACTGAAAAACTAG 60.128 42.308 0.00 0.00 0.00 2.57
360 361 5.858381 TCATCTGAGCACTGAAAAACTAGT 58.142 37.500 0.00 0.00 0.00 2.57
361 362 6.993079 TCATCTGAGCACTGAAAAACTAGTA 58.007 36.000 0.00 0.00 0.00 1.82
362 363 7.441836 TCATCTGAGCACTGAAAAACTAGTAA 58.558 34.615 0.00 0.00 0.00 2.24
363 364 8.097038 TCATCTGAGCACTGAAAAACTAGTAAT 58.903 33.333 0.00 0.00 0.00 1.89
364 365 7.891183 TCTGAGCACTGAAAAACTAGTAATC 57.109 36.000 0.00 0.00 0.00 1.75
365 366 6.586463 TCTGAGCACTGAAAAACTAGTAATCG 59.414 38.462 0.00 0.00 0.00 3.34
366 367 6.220930 TGAGCACTGAAAAACTAGTAATCGT 58.779 36.000 0.00 0.00 0.00 3.73
367 368 6.704493 TGAGCACTGAAAAACTAGTAATCGTT 59.296 34.615 0.00 0.00 0.00 3.85
368 369 7.868922 TGAGCACTGAAAAACTAGTAATCGTTA 59.131 33.333 0.00 0.00 0.00 3.18
369 370 8.240883 AGCACTGAAAAACTAGTAATCGTTAG 57.759 34.615 0.00 0.00 0.00 2.34
370 371 7.871463 AGCACTGAAAAACTAGTAATCGTTAGT 59.129 33.333 0.00 0.00 0.00 2.24
371 372 8.160976 GCACTGAAAAACTAGTAATCGTTAGTC 58.839 37.037 0.00 0.00 30.13 2.59
372 373 8.645487 CACTGAAAAACTAGTAATCGTTAGTCC 58.355 37.037 0.00 0.00 30.13 3.85
373 374 8.362639 ACTGAAAAACTAGTAATCGTTAGTCCA 58.637 33.333 0.00 0.00 30.13 4.02
374 375 8.752766 TGAAAAACTAGTAATCGTTAGTCCAG 57.247 34.615 0.00 0.00 30.13 3.86
375 376 8.579006 TGAAAAACTAGTAATCGTTAGTCCAGA 58.421 33.333 0.00 0.00 30.13 3.86
376 377 8.983307 AAAAACTAGTAATCGTTAGTCCAGAG 57.017 34.615 0.00 0.00 30.13 3.35
377 378 5.754543 ACTAGTAATCGTTAGTCCAGAGC 57.245 43.478 0.00 0.00 0.00 4.09
378 379 4.579753 ACTAGTAATCGTTAGTCCAGAGCC 59.420 45.833 0.00 0.00 0.00 4.70
379 380 3.362706 AGTAATCGTTAGTCCAGAGCCA 58.637 45.455 0.00 0.00 0.00 4.75
380 381 2.969628 AATCGTTAGTCCAGAGCCAG 57.030 50.000 0.00 0.00 0.00 4.85
381 382 1.115467 ATCGTTAGTCCAGAGCCAGG 58.885 55.000 0.00 0.00 0.00 4.45
382 383 0.039180 TCGTTAGTCCAGAGCCAGGA 59.961 55.000 0.00 0.00 0.00 3.86
383 384 1.115467 CGTTAGTCCAGAGCCAGGAT 58.885 55.000 0.00 0.00 37.52 3.24
384 385 2.092049 TCGTTAGTCCAGAGCCAGGATA 60.092 50.000 0.00 0.00 37.52 2.59
385 386 2.693591 CGTTAGTCCAGAGCCAGGATAA 59.306 50.000 0.00 0.00 37.52 1.75
386 387 3.491104 CGTTAGTCCAGAGCCAGGATAAC 60.491 52.174 0.00 0.00 37.52 1.89
387 388 1.115467 AGTCCAGAGCCAGGATAACG 58.885 55.000 0.00 0.00 37.52 3.18
388 389 0.824759 GTCCAGAGCCAGGATAACGT 59.175 55.000 0.00 0.00 37.52 3.99
389 390 1.207329 GTCCAGAGCCAGGATAACGTT 59.793 52.381 5.88 5.88 37.52 3.99
390 391 1.207089 TCCAGAGCCAGGATAACGTTG 59.793 52.381 11.99 0.00 0.00 4.10
391 392 1.066143 CCAGAGCCAGGATAACGTTGT 60.066 52.381 11.99 3.45 0.00 3.32
392 393 2.167693 CCAGAGCCAGGATAACGTTGTA 59.832 50.000 11.99 0.00 0.00 2.41
460 461 1.939785 GGCTCGTGCATACTCGTCG 60.940 63.158 12.07 0.00 41.91 5.12
462 463 1.194896 GCTCGTGCATACTCGTCGAC 61.195 60.000 5.18 5.18 39.41 4.20
463 464 0.589229 CTCGTGCATACTCGTCGACC 60.589 60.000 10.58 0.00 34.50 4.79
464 465 1.135939 CGTGCATACTCGTCGACCA 59.864 57.895 10.58 0.00 0.00 4.02
465 466 0.861866 CGTGCATACTCGTCGACCAG 60.862 60.000 10.58 9.63 0.00 4.00
472 473 1.313091 ACTCGTCGACCAGCAGCATA 61.313 55.000 10.31 0.00 0.00 3.14
516 517 5.348986 ACGATTGGACAGATACATGTACAC 58.651 41.667 7.96 5.78 43.75 2.90
519 520 4.632538 TGGACAGATACATGTACACGAG 57.367 45.455 7.96 6.75 39.14 4.18
542 543 1.001597 ACAGGACGAGTTCGAGTTGAC 60.002 52.381 8.72 0.00 43.02 3.18
548 549 2.174764 CGAGTTCGAGTTGACGTATGG 58.825 52.381 0.00 0.00 43.02 2.74
647 648 1.460255 TGGAAAAGGCCAGTGGGAG 59.540 57.895 12.15 0.00 35.59 4.30
651 652 1.368268 AAAAGGCCAGTGGGAGGGAA 61.368 55.000 12.15 0.00 35.59 3.97
652 653 1.368268 AAAGGCCAGTGGGAGGGAAA 61.368 55.000 12.15 0.00 35.59 3.13
718 719 5.004440 CGACCGTATATTATCTTGGCAATCG 59.996 44.000 0.00 0.00 0.00 3.34
753 755 2.438434 CTTACCGCTGGCCCCTTG 60.438 66.667 0.00 0.00 0.00 3.61
816 818 2.442212 TTGCCACGACTACATTTCGA 57.558 45.000 0.00 0.00 39.83 3.71
888 912 1.078709 CCTATGTCACACAGCAACCG 58.921 55.000 0.00 0.00 0.00 4.44
1218 1292 0.537188 CCACGGCCTTCATACTGTCT 59.463 55.000 0.00 0.00 0.00 3.41
1224 1298 1.471676 GCCTTCATACTGTCTGTCCGG 60.472 57.143 0.00 0.00 0.00 5.14
1290 1368 3.771160 GTGGTCGGCCGGTGAGAT 61.771 66.667 27.83 0.00 37.67 2.75
1291 1369 3.000819 TGGTCGGCCGGTGAGATT 61.001 61.111 27.83 0.00 37.67 2.40
1292 1370 2.267961 GGTCGGCCGGTGAGATTT 59.732 61.111 27.83 0.00 0.00 2.17
1306 1414 5.163814 CGGTGAGATTTTGGAACATCTTCTC 60.164 44.000 0.00 0.00 39.30 2.87
1409 1543 5.641209 CAGTTTGACCATAAGAGTGGAAGAG 59.359 44.000 0.00 0.00 42.02 2.85
1463 1619 8.961293 ATACCATTTGGGATGTGAATATGATT 57.039 30.769 0.96 0.00 37.36 2.57
1506 1666 4.391216 GTGTGATCTCCACTGTTCATTCTG 59.609 45.833 8.34 0.00 45.86 3.02
1517 1679 3.138304 TGTTCATTCTGGTTCGTCCAAG 58.862 45.455 4.04 0.26 46.59 3.61
1550 1713 8.716619 TCGACCGTGTAAAGAAATTTAAAATG 57.283 30.769 0.00 0.00 0.00 2.32
1570 1735 6.795144 AATGGCAATTCCTTTATGATGTCA 57.205 33.333 0.00 0.00 35.26 3.58
1647 1823 7.921745 GCGGAGTCATTCTTACTAAAGATAACT 59.078 37.037 0.00 0.00 41.36 2.24
1686 1862 3.745975 ACATGGAAGTACACAATGTGTCG 59.254 43.478 23.34 5.17 43.92 4.35
1824 2000 9.448438 CTAATATATTTGGCAACTGGCTACATA 57.552 33.333 0.00 0.00 44.01 2.29
1902 2078 5.054477 GGTCGCTTTGGCTATGTAGAAATA 58.946 41.667 0.00 0.00 36.09 1.40
2013 2189 2.996621 GTGGAGAATCGAGACCTGTTTG 59.003 50.000 0.00 0.00 34.37 2.93
2043 2219 1.599542 GTACATGATTGGAGGCTTCGC 59.400 52.381 0.00 0.00 0.00 4.70
2111 2287 0.038310 GGCCACCTTCAGTTTAGGCT 59.962 55.000 0.00 0.00 41.71 4.58
2143 2320 8.344831 CAGATTTCATTTTCCTTGTATATCGCA 58.655 33.333 0.00 0.00 0.00 5.10
2182 2359 4.156008 GTCTTGGTGTGAGAACTTTGTTGT 59.844 41.667 0.00 0.00 0.00 3.32
2183 2360 4.764823 TCTTGGTGTGAGAACTTTGTTGTT 59.235 37.500 0.00 0.00 0.00 2.83
2184 2361 5.242838 TCTTGGTGTGAGAACTTTGTTGTTT 59.757 36.000 0.00 0.00 0.00 2.83
2185 2362 4.804108 TGGTGTGAGAACTTTGTTGTTTG 58.196 39.130 0.00 0.00 0.00 2.93
2186 2363 4.279671 TGGTGTGAGAACTTTGTTGTTTGT 59.720 37.500 0.00 0.00 0.00 2.83
2187 2364 5.221342 TGGTGTGAGAACTTTGTTGTTTGTT 60.221 36.000 0.00 0.00 0.00 2.83
2188 2365 5.118510 GGTGTGAGAACTTTGTTGTTTGTTG 59.881 40.000 0.00 0.00 0.00 3.33
2209 2386 5.351948 TGGCTGTGTGCATCTTAGTTATA 57.648 39.130 0.00 0.00 45.15 0.98
2220 2397 4.174704 TCTTAGTTATACAGAGGCCGGA 57.825 45.455 5.05 0.00 0.00 5.14
2240 2417 6.033966 CCGGATGTAATGCTTAAACCTTTTC 58.966 40.000 0.00 0.00 29.44 2.29
2256 2433 3.694566 CCTTTTCAGTAATAAAGCGCCCT 59.305 43.478 2.29 0.00 31.54 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.013079 GGAAGTGAAATTCTCCCCCATTTTT 59.987 40.000 0.00 0.00 0.00 1.94
2 3 4.532126 GGAAGTGAAATTCTCCCCCATTTT 59.468 41.667 0.00 0.00 0.00 1.82
4 5 3.566553 GGGAAGTGAAATTCTCCCCCATT 60.567 47.826 14.26 0.00 32.07 3.16
6 7 1.357761 GGGAAGTGAAATTCTCCCCCA 59.642 52.381 14.26 0.00 32.07 4.96
7 8 2.145397 GGGAAGTGAAATTCTCCCCC 57.855 55.000 7.38 7.26 0.00 5.40
11 12 2.095461 GGCTGGGGAAGTGAAATTCTC 58.905 52.381 0.00 0.00 0.00 2.87
12 13 1.713078 AGGCTGGGGAAGTGAAATTCT 59.287 47.619 0.00 0.00 0.00 2.40
13 14 2.095461 GAGGCTGGGGAAGTGAAATTC 58.905 52.381 0.00 0.00 0.00 2.17
14 15 1.713078 AGAGGCTGGGGAAGTGAAATT 59.287 47.619 0.00 0.00 0.00 1.82
15 16 1.376649 AGAGGCTGGGGAAGTGAAAT 58.623 50.000 0.00 0.00 0.00 2.17
16 17 1.628846 GTAGAGGCTGGGGAAGTGAAA 59.371 52.381 0.00 0.00 0.00 2.69
17 18 1.276622 GTAGAGGCTGGGGAAGTGAA 58.723 55.000 0.00 0.00 0.00 3.18
18 19 0.116342 TGTAGAGGCTGGGGAAGTGA 59.884 55.000 0.00 0.00 0.00 3.41
19 20 0.250513 GTGTAGAGGCTGGGGAAGTG 59.749 60.000 0.00 0.00 0.00 3.16
20 21 0.910088 GGTGTAGAGGCTGGGGAAGT 60.910 60.000 0.00 0.00 0.00 3.01
21 22 0.909610 TGGTGTAGAGGCTGGGGAAG 60.910 60.000 0.00 0.00 0.00 3.46
22 23 0.474854 TTGGTGTAGAGGCTGGGGAA 60.475 55.000 0.00 0.00 0.00 3.97
23 24 1.159905 TTGGTGTAGAGGCTGGGGA 59.840 57.895 0.00 0.00 0.00 4.81
24 25 1.201429 AGTTGGTGTAGAGGCTGGGG 61.201 60.000 0.00 0.00 0.00 4.96
25 26 1.482593 CTAGTTGGTGTAGAGGCTGGG 59.517 57.143 0.00 0.00 0.00 4.45
26 27 1.482593 CCTAGTTGGTGTAGAGGCTGG 59.517 57.143 0.00 0.00 0.00 4.85
27 28 1.482593 CCCTAGTTGGTGTAGAGGCTG 59.517 57.143 0.00 0.00 0.00 4.85
28 29 1.361543 TCCCTAGTTGGTGTAGAGGCT 59.638 52.381 0.00 0.00 0.00 4.58
29 30 1.861982 TCCCTAGTTGGTGTAGAGGC 58.138 55.000 0.00 0.00 0.00 4.70
30 31 2.103263 GCATCCCTAGTTGGTGTAGAGG 59.897 54.545 0.00 0.00 0.00 3.69
31 32 2.766263 TGCATCCCTAGTTGGTGTAGAG 59.234 50.000 0.00 0.00 0.00 2.43
32 33 2.827755 TGCATCCCTAGTTGGTGTAGA 58.172 47.619 0.00 0.00 0.00 2.59
33 34 3.845781 ATGCATCCCTAGTTGGTGTAG 57.154 47.619 0.00 0.00 0.00 2.74
34 35 3.069016 CGTATGCATCCCTAGTTGGTGTA 59.931 47.826 0.19 0.00 0.00 2.90
35 36 2.158957 CGTATGCATCCCTAGTTGGTGT 60.159 50.000 0.19 0.00 0.00 4.16
36 37 2.102420 TCGTATGCATCCCTAGTTGGTG 59.898 50.000 0.19 0.00 0.00 4.17
37 38 2.102588 GTCGTATGCATCCCTAGTTGGT 59.897 50.000 0.19 0.00 0.00 3.67
38 39 2.548067 GGTCGTATGCATCCCTAGTTGG 60.548 54.545 0.19 0.00 0.00 3.77
39 40 2.102420 TGGTCGTATGCATCCCTAGTTG 59.898 50.000 0.19 0.00 0.00 3.16
40 41 2.394632 TGGTCGTATGCATCCCTAGTT 58.605 47.619 0.19 0.00 0.00 2.24
41 42 2.082140 TGGTCGTATGCATCCCTAGT 57.918 50.000 0.19 0.00 0.00 2.57
42 43 3.685139 AATGGTCGTATGCATCCCTAG 57.315 47.619 0.19 0.00 0.00 3.02
43 44 4.431416 AAAATGGTCGTATGCATCCCTA 57.569 40.909 0.19 0.00 0.00 3.53
44 45 3.297134 AAAATGGTCGTATGCATCCCT 57.703 42.857 0.19 0.00 0.00 4.20
45 46 4.134563 ACTAAAATGGTCGTATGCATCCC 58.865 43.478 0.19 0.00 0.00 3.85
46 47 7.277981 CCTATACTAAAATGGTCGTATGCATCC 59.722 40.741 0.19 0.00 0.00 3.51
47 48 7.817962 ACCTATACTAAAATGGTCGTATGCATC 59.182 37.037 0.19 0.00 0.00 3.91
48 49 7.676947 ACCTATACTAAAATGGTCGTATGCAT 58.323 34.615 3.79 3.79 0.00 3.96
49 50 7.058023 ACCTATACTAAAATGGTCGTATGCA 57.942 36.000 0.00 0.00 0.00 3.96
50 51 7.543520 GGTACCTATACTAAAATGGTCGTATGC 59.456 40.741 4.06 0.00 32.74 3.14
51 52 8.579006 TGGTACCTATACTAAAATGGTCGTATG 58.421 37.037 14.36 0.00 32.74 2.39
52 53 8.710749 TGGTACCTATACTAAAATGGTCGTAT 57.289 34.615 14.36 0.00 32.74 3.06
53 54 8.532186 TTGGTACCTATACTAAAATGGTCGTA 57.468 34.615 14.36 0.00 29.56 3.43
54 55 7.342799 TCTTGGTACCTATACTAAAATGGTCGT 59.657 37.037 14.36 0.00 32.02 4.34
55 56 7.719483 TCTTGGTACCTATACTAAAATGGTCG 58.281 38.462 14.36 0.00 32.02 4.79
75 76 3.118408 TCCGAGGACCATGTTTATCTTGG 60.118 47.826 0.00 0.00 44.08 3.61
76 77 4.137116 TCCGAGGACCATGTTTATCTTG 57.863 45.455 0.00 0.00 0.00 3.02
77 78 4.837093 TTCCGAGGACCATGTTTATCTT 57.163 40.909 0.00 0.00 0.00 2.40
78 79 5.373812 AATTCCGAGGACCATGTTTATCT 57.626 39.130 0.00 0.00 0.00 1.98
79 80 6.451064 AAAATTCCGAGGACCATGTTTATC 57.549 37.500 0.00 0.00 0.00 1.75
80 81 6.850752 AAAAATTCCGAGGACCATGTTTAT 57.149 33.333 0.00 0.00 0.00 1.40
137 138 1.470051 AGTTTGGTGTGTGGTGGAAC 58.530 50.000 0.00 0.00 0.00 3.62
138 139 2.223803 AAGTTTGGTGTGTGGTGGAA 57.776 45.000 0.00 0.00 0.00 3.53
139 140 3.367646 TTAAGTTTGGTGTGTGGTGGA 57.632 42.857 0.00 0.00 0.00 4.02
140 141 3.005367 GGATTAAGTTTGGTGTGTGGTGG 59.995 47.826 0.00 0.00 0.00 4.61
141 142 3.888930 AGGATTAAGTTTGGTGTGTGGTG 59.111 43.478 0.00 0.00 0.00 4.17
142 143 4.142038 GAGGATTAAGTTTGGTGTGTGGT 58.858 43.478 0.00 0.00 0.00 4.16
143 144 4.141287 TGAGGATTAAGTTTGGTGTGTGG 58.859 43.478 0.00 0.00 0.00 4.17
144 145 5.766150 TTGAGGATTAAGTTTGGTGTGTG 57.234 39.130 0.00 0.00 0.00 3.82
145 146 8.472007 TTTATTGAGGATTAAGTTTGGTGTGT 57.528 30.769 0.00 0.00 0.00 3.72
146 147 9.357652 CATTTATTGAGGATTAAGTTTGGTGTG 57.642 33.333 0.00 0.00 0.00 3.82
147 148 8.531146 CCATTTATTGAGGATTAAGTTTGGTGT 58.469 33.333 0.00 0.00 0.00 4.16
148 149 7.981225 CCCATTTATTGAGGATTAAGTTTGGTG 59.019 37.037 0.00 0.00 0.00 4.17
149 150 7.125659 CCCCATTTATTGAGGATTAAGTTTGGT 59.874 37.037 0.00 0.00 0.00 3.67
150 151 7.418942 CCCCCATTTATTGAGGATTAAGTTTGG 60.419 40.741 0.00 0.00 0.00 3.28
151 152 7.344352 TCCCCCATTTATTGAGGATTAAGTTTG 59.656 37.037 0.00 0.00 0.00 2.93
152 153 7.426667 TCCCCCATTTATTGAGGATTAAGTTT 58.573 34.615 0.00 0.00 0.00 2.66
153 154 6.992235 TCCCCCATTTATTGAGGATTAAGTT 58.008 36.000 0.00 0.00 0.00 2.66
154 155 6.606241 TCCCCCATTTATTGAGGATTAAGT 57.394 37.500 0.00 0.00 0.00 2.24
155 156 7.912778 TTTCCCCCATTTATTGAGGATTAAG 57.087 36.000 0.00 0.00 30.46 1.85
156 157 7.126573 GGTTTTCCCCCATTTATTGAGGATTAA 59.873 37.037 0.00 0.00 30.46 1.40
157 158 6.613679 GGTTTTCCCCCATTTATTGAGGATTA 59.386 38.462 0.00 0.00 30.46 1.75
158 159 5.428457 GGTTTTCCCCCATTTATTGAGGATT 59.572 40.000 0.00 0.00 30.46 3.01
159 160 4.968719 GGTTTTCCCCCATTTATTGAGGAT 59.031 41.667 0.00 0.00 30.46 3.24
160 161 4.358214 GGTTTTCCCCCATTTATTGAGGA 58.642 43.478 0.00 0.00 0.00 3.71
161 162 4.753516 GGTTTTCCCCCATTTATTGAGG 57.246 45.455 0.00 0.00 0.00 3.86
175 176 1.605165 TGATGCACGGGGGTTTTCC 60.605 57.895 0.00 0.00 39.75 3.13
176 177 1.584495 GTGATGCACGGGGGTTTTC 59.416 57.895 0.00 0.00 0.00 2.29
177 178 1.906333 GGTGATGCACGGGGGTTTT 60.906 57.895 0.00 0.00 34.83 2.43
178 179 2.282887 GGTGATGCACGGGGGTTT 60.283 61.111 0.00 0.00 34.83 3.27
179 180 3.256960 AGGTGATGCACGGGGGTT 61.257 61.111 0.00 0.00 34.83 4.11
180 181 4.033776 CAGGTGATGCACGGGGGT 62.034 66.667 0.00 0.00 34.83 4.95
181 182 3.976701 GACAGGTGATGCACGGGGG 62.977 68.421 0.00 0.00 34.83 5.40
182 183 2.436646 GACAGGTGATGCACGGGG 60.437 66.667 0.00 0.00 34.83 5.73
183 184 0.677731 ATTGACAGGTGATGCACGGG 60.678 55.000 0.00 0.00 34.83 5.28
184 185 1.131126 GAATTGACAGGTGATGCACGG 59.869 52.381 0.00 0.00 34.83 4.94
185 186 2.079158 AGAATTGACAGGTGATGCACG 58.921 47.619 0.00 0.00 34.83 5.34
186 187 4.507710 TCTAGAATTGACAGGTGATGCAC 58.492 43.478 0.00 0.00 0.00 4.57
187 188 4.824479 TCTAGAATTGACAGGTGATGCA 57.176 40.909 0.00 0.00 0.00 3.96
188 189 6.690194 ATTTCTAGAATTGACAGGTGATGC 57.310 37.500 5.89 0.00 0.00 3.91
189 190 8.272545 TCAATTTCTAGAATTGACAGGTGATG 57.727 34.615 18.46 5.46 40.53 3.07
190 191 8.734386 GTTCAATTTCTAGAATTGACAGGTGAT 58.266 33.333 20.51 2.73 43.81 3.06
191 192 7.939039 AGTTCAATTTCTAGAATTGACAGGTGA 59.061 33.333 20.51 9.82 43.81 4.02
192 193 8.103948 AGTTCAATTTCTAGAATTGACAGGTG 57.896 34.615 20.51 8.21 43.81 4.00
193 194 7.939039 TGAGTTCAATTTCTAGAATTGACAGGT 59.061 33.333 20.51 11.32 43.81 4.00
194 195 8.327941 TGAGTTCAATTTCTAGAATTGACAGG 57.672 34.615 20.51 4.92 43.81 4.00
195 196 8.449397 CCTGAGTTCAATTTCTAGAATTGACAG 58.551 37.037 20.51 21.05 43.81 3.51
196 197 7.939039 ACCTGAGTTCAATTTCTAGAATTGACA 59.061 33.333 20.51 16.39 43.81 3.58
197 198 8.329203 ACCTGAGTTCAATTTCTAGAATTGAC 57.671 34.615 20.51 16.87 43.81 3.18
198 199 8.156820 TGACCTGAGTTCAATTTCTAGAATTGA 58.843 33.333 18.46 18.46 42.82 2.57
199 200 8.327941 TGACCTGAGTTCAATTTCTAGAATTG 57.672 34.615 5.89 12.36 38.60 2.32
200 201 9.525826 AATGACCTGAGTTCAATTTCTAGAATT 57.474 29.630 5.89 0.00 0.00 2.17
202 203 9.658799 CTAATGACCTGAGTTCAATTTCTAGAA 57.341 33.333 0.00 0.00 0.00 2.10
203 204 8.260818 CCTAATGACCTGAGTTCAATTTCTAGA 58.739 37.037 0.00 0.00 0.00 2.43
204 205 7.011857 GCCTAATGACCTGAGTTCAATTTCTAG 59.988 40.741 0.00 0.00 0.00 2.43
205 206 6.823689 GCCTAATGACCTGAGTTCAATTTCTA 59.176 38.462 0.00 0.00 0.00 2.10
206 207 5.649831 GCCTAATGACCTGAGTTCAATTTCT 59.350 40.000 0.00 0.00 0.00 2.52
207 208 5.649831 AGCCTAATGACCTGAGTTCAATTTC 59.350 40.000 0.00 0.00 0.00 2.17
208 209 5.416952 CAGCCTAATGACCTGAGTTCAATTT 59.583 40.000 0.00 0.00 0.00 1.82
209 210 4.946157 CAGCCTAATGACCTGAGTTCAATT 59.054 41.667 0.00 0.00 0.00 2.32
210 211 4.521146 CAGCCTAATGACCTGAGTTCAAT 58.479 43.478 0.00 0.00 0.00 2.57
211 212 3.869912 GCAGCCTAATGACCTGAGTTCAA 60.870 47.826 0.00 0.00 0.00 2.69
212 213 2.355108 GCAGCCTAATGACCTGAGTTCA 60.355 50.000 0.00 0.00 0.00 3.18
213 214 2.284190 GCAGCCTAATGACCTGAGTTC 58.716 52.381 0.00 0.00 0.00 3.01
214 215 1.630369 TGCAGCCTAATGACCTGAGTT 59.370 47.619 0.00 0.00 0.00 3.01
215 216 1.065854 GTGCAGCCTAATGACCTGAGT 60.066 52.381 0.00 0.00 0.00 3.41
216 217 1.065926 TGTGCAGCCTAATGACCTGAG 60.066 52.381 0.00 0.00 0.00 3.35
217 218 0.983467 TGTGCAGCCTAATGACCTGA 59.017 50.000 0.00 0.00 0.00 3.86
218 219 1.470098 GTTGTGCAGCCTAATGACCTG 59.530 52.381 0.00 0.00 0.00 4.00
219 220 1.614317 GGTTGTGCAGCCTAATGACCT 60.614 52.381 0.00 0.00 0.00 3.85
220 221 0.811281 GGTTGTGCAGCCTAATGACC 59.189 55.000 0.00 0.00 0.00 4.02
221 222 1.200020 GTGGTTGTGCAGCCTAATGAC 59.800 52.381 6.62 0.00 32.40 3.06
222 223 1.202867 TGTGGTTGTGCAGCCTAATGA 60.203 47.619 6.62 0.00 32.40 2.57
223 224 1.068333 GTGTGGTTGTGCAGCCTAATG 60.068 52.381 6.62 0.00 32.40 1.90
224 225 1.247567 GTGTGGTTGTGCAGCCTAAT 58.752 50.000 6.62 0.00 32.40 1.73
225 226 0.106967 TGTGTGGTTGTGCAGCCTAA 60.107 50.000 6.62 0.00 32.40 2.69
226 227 0.817634 GTGTGTGGTTGTGCAGCCTA 60.818 55.000 6.62 0.00 32.40 3.93
227 228 2.120909 GTGTGTGGTTGTGCAGCCT 61.121 57.895 6.62 0.00 32.40 4.58
228 229 2.412937 GTGTGTGGTTGTGCAGCC 59.587 61.111 0.00 0.00 0.00 4.85
229 230 1.943116 TTGGTGTGTGGTTGTGCAGC 61.943 55.000 0.00 0.00 0.00 5.25
230 231 0.101040 CTTGGTGTGTGGTTGTGCAG 59.899 55.000 0.00 0.00 0.00 4.41
231 232 1.318886 CCTTGGTGTGTGGTTGTGCA 61.319 55.000 0.00 0.00 0.00 4.57
232 233 1.437160 CCTTGGTGTGTGGTTGTGC 59.563 57.895 0.00 0.00 0.00 4.57
233 234 1.037030 AGCCTTGGTGTGTGGTTGTG 61.037 55.000 0.00 0.00 0.00 3.33
234 235 0.751643 GAGCCTTGGTGTGTGGTTGT 60.752 55.000 0.00 0.00 0.00 3.32
235 236 0.466189 AGAGCCTTGGTGTGTGGTTG 60.466 55.000 0.00 0.00 0.00 3.77
236 237 0.179018 GAGAGCCTTGGTGTGTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
237 238 1.056700 AGAGAGCCTTGGTGTGTGGT 61.057 55.000 0.00 0.00 0.00 4.16
238 239 0.109342 AAGAGAGCCTTGGTGTGTGG 59.891 55.000 0.00 0.00 32.92 4.17
239 240 1.605710 CAAAGAGAGCCTTGGTGTGTG 59.394 52.381 0.00 0.00 34.79 3.82
240 241 1.972872 CAAAGAGAGCCTTGGTGTGT 58.027 50.000 0.00 0.00 34.79 3.72
241 242 0.595095 GCAAAGAGAGCCTTGGTGTG 59.405 55.000 0.00 0.00 34.79 3.82
242 243 0.183492 TGCAAAGAGAGCCTTGGTGT 59.817 50.000 0.00 0.00 34.79 4.16
243 244 0.879765 CTGCAAAGAGAGCCTTGGTG 59.120 55.000 0.00 0.00 34.79 4.17
244 245 0.892814 GCTGCAAAGAGAGCCTTGGT 60.893 55.000 0.00 0.00 34.79 3.67
245 246 1.881602 GCTGCAAAGAGAGCCTTGG 59.118 57.895 0.00 0.00 34.79 3.61
250 251 1.584380 CCTGTGGCTGCAAAGAGAGC 61.584 60.000 0.50 0.00 34.23 4.09
251 252 1.584380 GCCTGTGGCTGCAAAGAGAG 61.584 60.000 0.50 0.00 46.69 3.20
252 253 1.601759 GCCTGTGGCTGCAAAGAGA 60.602 57.895 0.50 0.00 46.69 3.10
253 254 2.960170 GCCTGTGGCTGCAAAGAG 59.040 61.111 0.50 0.00 46.69 2.85
263 264 0.325933 TCTGATCAACTGGCCTGTGG 59.674 55.000 16.89 13.79 0.00 4.17
264 265 1.002888 AGTCTGATCAACTGGCCTGTG 59.997 52.381 16.89 10.48 0.00 3.66
265 266 1.277557 GAGTCTGATCAACTGGCCTGT 59.722 52.381 9.88 9.88 0.00 4.00
266 267 1.554160 AGAGTCTGATCAACTGGCCTG 59.446 52.381 8.29 8.29 0.00 4.85
267 268 1.949799 AGAGTCTGATCAACTGGCCT 58.050 50.000 3.32 4.47 0.00 5.19
268 269 2.235898 AGAAGAGTCTGATCAACTGGCC 59.764 50.000 13.14 0.00 30.83 5.36
269 270 3.608316 AGAAGAGTCTGATCAACTGGC 57.392 47.619 13.14 0.00 30.83 4.85
270 271 7.326454 TCATTTAGAAGAGTCTGATCAACTGG 58.674 38.462 13.14 0.00 35.12 4.00
271 272 8.945481 ATCATTTAGAAGAGTCTGATCAACTG 57.055 34.615 13.14 0.00 35.12 3.16
272 273 9.956640 AAATCATTTAGAAGAGTCTGATCAACT 57.043 29.630 9.42 9.42 35.12 3.16
299 300 5.054477 CACGAGGAGTTCTTACAGGAAAAA 58.946 41.667 0.00 0.00 0.00 1.94
300 301 4.628074 CACGAGGAGTTCTTACAGGAAAA 58.372 43.478 0.00 0.00 0.00 2.29
301 302 3.554337 GCACGAGGAGTTCTTACAGGAAA 60.554 47.826 0.00 0.00 0.00 3.13
302 303 2.029290 GCACGAGGAGTTCTTACAGGAA 60.029 50.000 0.00 0.00 0.00 3.36
303 304 1.544691 GCACGAGGAGTTCTTACAGGA 59.455 52.381 0.00 0.00 0.00 3.86
304 305 1.546476 AGCACGAGGAGTTCTTACAGG 59.454 52.381 0.00 0.00 0.00 4.00
305 306 2.229062 TGAGCACGAGGAGTTCTTACAG 59.771 50.000 0.00 0.00 0.00 2.74
306 307 2.229062 CTGAGCACGAGGAGTTCTTACA 59.771 50.000 0.00 0.00 0.00 2.41
307 308 2.869897 CTGAGCACGAGGAGTTCTTAC 58.130 52.381 0.00 0.00 0.00 2.34
308 309 1.202582 GCTGAGCACGAGGAGTTCTTA 59.797 52.381 0.00 0.00 0.00 2.10
309 310 0.037790 GCTGAGCACGAGGAGTTCTT 60.038 55.000 0.00 0.00 0.00 2.52
310 311 1.589113 GCTGAGCACGAGGAGTTCT 59.411 57.895 0.00 0.00 0.00 3.01
311 312 1.803519 CGCTGAGCACGAGGAGTTC 60.804 63.158 4.88 0.00 0.00 3.01
312 313 2.259818 CGCTGAGCACGAGGAGTT 59.740 61.111 4.88 0.00 0.00 3.01
313 314 2.986413 ACGCTGAGCACGAGGAGT 60.986 61.111 4.88 0.00 0.00 3.85
314 315 2.505777 CACGCTGAGCACGAGGAG 60.506 66.667 4.88 0.00 0.00 3.69
315 316 3.295273 ACACGCTGAGCACGAGGA 61.295 61.111 4.88 0.00 0.00 3.71
316 317 3.108289 CACACGCTGAGCACGAGG 61.108 66.667 4.88 0.00 0.00 4.63
317 318 3.771491 GCACACGCTGAGCACGAG 61.771 66.667 4.88 0.00 34.08 4.18
320 321 2.959357 GAAGGCACACGCTGAGCAC 61.959 63.158 4.88 0.00 35.63 4.40
321 322 2.666190 GAAGGCACACGCTGAGCA 60.666 61.111 4.88 0.00 35.63 4.26
322 323 1.975363 GATGAAGGCACACGCTGAGC 61.975 60.000 0.00 0.00 38.60 4.26
323 324 0.390866 AGATGAAGGCACACGCTGAG 60.391 55.000 0.00 0.00 38.60 3.35
324 325 0.671472 CAGATGAAGGCACACGCTGA 60.671 55.000 9.18 0.00 38.60 4.26
325 326 0.671472 TCAGATGAAGGCACACGCTG 60.671 55.000 0.00 0.00 38.60 5.18
326 327 0.390866 CTCAGATGAAGGCACACGCT 60.391 55.000 0.00 0.00 38.60 5.07
327 328 1.975363 GCTCAGATGAAGGCACACGC 61.975 60.000 0.00 0.00 37.44 5.34
328 329 0.671472 TGCTCAGATGAAGGCACACG 60.671 55.000 0.00 0.00 0.00 4.49
329 330 3.238232 TGCTCAGATGAAGGCACAC 57.762 52.632 0.00 0.00 0.00 3.82
332 333 0.978907 TCAGTGCTCAGATGAAGGCA 59.021 50.000 0.00 0.00 0.00 4.75
333 334 2.105006 TTCAGTGCTCAGATGAAGGC 57.895 50.000 0.00 0.00 0.00 4.35
334 335 4.518211 AGTTTTTCAGTGCTCAGATGAAGG 59.482 41.667 0.00 0.00 34.64 3.46
335 336 5.686159 AGTTTTTCAGTGCTCAGATGAAG 57.314 39.130 0.00 0.00 34.64 3.02
336 337 6.291377 ACTAGTTTTTCAGTGCTCAGATGAA 58.709 36.000 0.00 0.00 0.00 2.57
337 338 5.858381 ACTAGTTTTTCAGTGCTCAGATGA 58.142 37.500 0.00 0.00 0.00 2.92
338 339 7.658179 TTACTAGTTTTTCAGTGCTCAGATG 57.342 36.000 0.00 0.00 0.00 2.90
339 340 7.276658 CGATTACTAGTTTTTCAGTGCTCAGAT 59.723 37.037 0.00 0.00 0.00 2.90
340 341 6.586463 CGATTACTAGTTTTTCAGTGCTCAGA 59.414 38.462 0.00 0.00 0.00 3.27
341 342 6.366332 ACGATTACTAGTTTTTCAGTGCTCAG 59.634 38.462 0.00 0.00 0.00 3.35
342 343 6.220930 ACGATTACTAGTTTTTCAGTGCTCA 58.779 36.000 0.00 0.00 0.00 4.26
343 344 6.707599 ACGATTACTAGTTTTTCAGTGCTC 57.292 37.500 0.00 0.00 0.00 4.26
344 345 7.871463 ACTAACGATTACTAGTTTTTCAGTGCT 59.129 33.333 0.00 0.00 0.00 4.40
345 346 8.015409 ACTAACGATTACTAGTTTTTCAGTGC 57.985 34.615 0.00 0.00 0.00 4.40
346 347 8.645487 GGACTAACGATTACTAGTTTTTCAGTG 58.355 37.037 0.00 0.00 0.00 3.66
347 348 8.362639 TGGACTAACGATTACTAGTTTTTCAGT 58.637 33.333 0.00 0.00 0.00 3.41
348 349 8.752766 TGGACTAACGATTACTAGTTTTTCAG 57.247 34.615 0.00 0.00 0.00 3.02
349 350 8.579006 TCTGGACTAACGATTACTAGTTTTTCA 58.421 33.333 0.00 0.00 0.00 2.69
350 351 8.976986 TCTGGACTAACGATTACTAGTTTTTC 57.023 34.615 0.00 0.00 0.00 2.29
351 352 7.544915 GCTCTGGACTAACGATTACTAGTTTTT 59.455 37.037 0.00 0.00 0.00 1.94
352 353 7.034397 GCTCTGGACTAACGATTACTAGTTTT 58.966 38.462 0.00 0.00 0.00 2.43
353 354 6.405619 GGCTCTGGACTAACGATTACTAGTTT 60.406 42.308 0.00 0.00 0.00 2.66
354 355 5.067544 GGCTCTGGACTAACGATTACTAGTT 59.932 44.000 0.00 0.00 0.00 2.24
355 356 4.579753 GGCTCTGGACTAACGATTACTAGT 59.420 45.833 0.00 0.00 0.00 2.57
356 357 4.579340 TGGCTCTGGACTAACGATTACTAG 59.421 45.833 0.00 0.00 0.00 2.57
357 358 4.529897 TGGCTCTGGACTAACGATTACTA 58.470 43.478 0.00 0.00 0.00 1.82
358 359 3.362706 TGGCTCTGGACTAACGATTACT 58.637 45.455 0.00 0.00 0.00 2.24
359 360 3.491104 CCTGGCTCTGGACTAACGATTAC 60.491 52.174 0.00 0.00 0.00 1.89
360 361 2.693591 CCTGGCTCTGGACTAACGATTA 59.306 50.000 0.00 0.00 0.00 1.75
361 362 1.482593 CCTGGCTCTGGACTAACGATT 59.517 52.381 0.00 0.00 0.00 3.34
362 363 1.115467 CCTGGCTCTGGACTAACGAT 58.885 55.000 0.00 0.00 0.00 3.73
363 364 0.039180 TCCTGGCTCTGGACTAACGA 59.961 55.000 0.00 0.00 0.00 3.85
364 365 1.115467 ATCCTGGCTCTGGACTAACG 58.885 55.000 3.52 0.00 34.44 3.18
365 366 3.491104 CGTTATCCTGGCTCTGGACTAAC 60.491 52.174 3.52 10.52 34.44 2.34
366 367 2.693591 CGTTATCCTGGCTCTGGACTAA 59.306 50.000 3.52 2.82 34.44 2.24
367 368 2.307768 CGTTATCCTGGCTCTGGACTA 58.692 52.381 3.52 0.00 34.44 2.59
368 369 1.115467 CGTTATCCTGGCTCTGGACT 58.885 55.000 3.52 0.00 34.44 3.85
369 370 0.824759 ACGTTATCCTGGCTCTGGAC 59.175 55.000 3.52 0.00 34.44 4.02
370 371 1.207089 CAACGTTATCCTGGCTCTGGA 59.793 52.381 0.00 3.86 36.01 3.86
371 372 1.066143 ACAACGTTATCCTGGCTCTGG 60.066 52.381 0.00 0.00 0.00 3.86
372 373 2.386661 ACAACGTTATCCTGGCTCTG 57.613 50.000 0.00 0.00 0.00 3.35
373 374 2.159282 CGTACAACGTTATCCTGGCTCT 60.159 50.000 0.00 0.00 36.74 4.09
374 375 2.190981 CGTACAACGTTATCCTGGCTC 58.809 52.381 0.00 0.00 36.74 4.70
375 376 2.288961 CGTACAACGTTATCCTGGCT 57.711 50.000 0.00 0.00 36.74 4.75
387 388 5.389411 GGTTGTCCGGTTAATTACGTACAAC 60.389 44.000 19.74 19.74 40.19 3.32
388 389 4.688413 GGTTGTCCGGTTAATTACGTACAA 59.312 41.667 0.00 0.00 0.00 2.41
389 390 4.241681 GGTTGTCCGGTTAATTACGTACA 58.758 43.478 0.00 0.00 0.00 2.90
390 391 4.840401 GGTTGTCCGGTTAATTACGTAC 57.160 45.455 0.00 0.00 0.00 3.67
421 422 3.600388 CTTGTACCATCCTGAACCTGAC 58.400 50.000 0.00 0.00 0.00 3.51
460 461 3.399440 AAGCTCTATATGCTGCTGGTC 57.601 47.619 0.00 0.00 41.03 4.02
462 463 2.225963 GCAAAGCTCTATATGCTGCTGG 59.774 50.000 0.00 0.00 41.03 4.85
463 464 3.139850 AGCAAAGCTCTATATGCTGCTG 58.860 45.455 0.00 8.62 46.66 4.41
464 465 3.488778 AGCAAAGCTCTATATGCTGCT 57.511 42.857 0.00 8.04 46.66 4.24
472 473 5.532025 GTTTACACGAAGCAAAGCTCTAT 57.468 39.130 0.00 0.00 38.25 1.98
516 517 0.247735 CGAACTCGTCCTGTAGCTCG 60.248 60.000 0.00 0.00 34.11 5.03
519 520 0.803740 ACTCGAACTCGTCCTGTAGC 59.196 55.000 0.00 0.00 40.80 3.58
542 543 5.902681 TCTCTATCCTTTGTGAACCATACG 58.097 41.667 0.00 0.00 0.00 3.06
548 549 6.644347 TGATTCCTCTCTATCCTTTGTGAAC 58.356 40.000 0.00 0.00 0.00 3.18
647 648 1.536073 GCCTGCCAAGGTTCTTTCCC 61.536 60.000 0.00 0.00 46.43 3.97
651 652 1.538687 GCATGCCTGCCAAGGTTCTT 61.539 55.000 6.36 0.00 46.43 2.52
652 653 1.980772 GCATGCCTGCCAAGGTTCT 60.981 57.895 6.36 0.00 46.43 3.01
718 719 0.668706 AGTGACACGATGAGCTGCAC 60.669 55.000 1.02 0.00 0.00 4.57
753 755 0.536006 CCGGAGATTCCCATGCTTCC 60.536 60.000 0.00 0.00 31.13 3.46
816 818 1.382522 CCTTAGATGCGTGCACCATT 58.617 50.000 18.11 12.16 0.00 3.16
888 912 4.135306 GAGGTAGCTTGCCCTTTTATACC 58.865 47.826 0.00 0.00 33.02 2.73
1023 1072 2.697644 CCCTTGATCCCCCTGGCT 60.698 66.667 0.00 0.00 0.00 4.75
1174 1248 3.969802 GTCGACGTCACCGGTGGT 61.970 66.667 33.40 24.17 38.78 4.16
1218 1292 3.589654 CTTGAAGCGCTCCCGGACA 62.590 63.158 12.06 1.69 34.32 4.02
1224 1298 1.960994 GCTCGTTCTTGAAGCGCTCC 61.961 60.000 12.06 0.00 0.00 4.70
1286 1364 4.938226 ACCGAGAAGATGTTCCAAAATCTC 59.062 41.667 0.00 0.00 31.88 2.75
1289 1367 4.636206 GCTACCGAGAAGATGTTCCAAAAT 59.364 41.667 0.00 0.00 32.48 1.82
1290 1368 4.000988 GCTACCGAGAAGATGTTCCAAAA 58.999 43.478 0.00 0.00 32.48 2.44
1291 1369 3.596214 GCTACCGAGAAGATGTTCCAAA 58.404 45.455 0.00 0.00 32.48 3.28
1292 1370 2.093658 GGCTACCGAGAAGATGTTCCAA 60.094 50.000 0.00 0.00 32.48 3.53
1306 1414 4.245660 CAAGTATGTATCCATGGCTACCG 58.754 47.826 20.37 1.90 32.29 4.02
1371 1500 4.440112 GGTCAAACTGAAGTCCACAAAAGG 60.440 45.833 0.00 0.00 0.00 3.11
1439 1588 8.226810 AGAATCATATTCACATCCCAAATGGTA 58.773 33.333 0.00 0.00 34.77 3.25
1463 1619 5.471116 CACACAAACTCCATTCTGATTGAGA 59.529 40.000 1.30 0.00 31.31 3.27
1506 1666 0.680061 AGTGGAGTCTTGGACGAACC 59.320 55.000 0.00 0.00 37.67 3.62
1517 1679 0.877071 TTACACGGTCGAGTGGAGTC 59.123 55.000 9.35 0.00 45.80 3.36
1550 1713 6.455360 TCTTGACATCATAAAGGAATTGCC 57.545 37.500 0.00 0.00 0.00 4.52
1647 1823 9.753674 ACTTCCATGTCAATTCCTCTTAATAAA 57.246 29.630 0.00 0.00 0.00 1.40
1686 1862 2.076100 TGTCTCATCATGCGGACAAAC 58.924 47.619 9.77 0.00 36.04 2.93
1824 2000 7.684529 AGAGTTCTAAACTTGTGATCAATCCT 58.315 34.615 0.00 0.00 43.03 3.24
2013 2189 3.009723 CCAATCATGTACACACCTCCAC 58.990 50.000 0.00 0.00 0.00 4.02
2160 2337 4.331968 ACAACAAAGTTCTCACACCAAGA 58.668 39.130 0.00 0.00 0.00 3.02
2182 2359 1.401761 AGATGCACACAGCCAACAAA 58.598 45.000 0.00 0.00 44.83 2.83
2183 2360 1.401761 AAGATGCACACAGCCAACAA 58.598 45.000 0.00 0.00 44.83 2.83
2184 2361 2.153645 CTAAGATGCACACAGCCAACA 58.846 47.619 0.00 0.00 44.83 3.33
2185 2362 2.154462 ACTAAGATGCACACAGCCAAC 58.846 47.619 0.00 0.00 44.83 3.77
2186 2363 2.566833 ACTAAGATGCACACAGCCAA 57.433 45.000 0.00 0.00 44.83 4.52
2187 2364 2.566833 AACTAAGATGCACACAGCCA 57.433 45.000 0.00 0.00 44.83 4.75
2188 2365 5.116180 TGTATAACTAAGATGCACACAGCC 58.884 41.667 0.00 0.00 44.83 4.85
2209 2386 0.179045 GCATTACATCCGGCCTCTGT 60.179 55.000 0.00 3.95 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.