Multiple sequence alignment - TraesCS3B01G468500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G468500 chr3B 100.000 2530 0 0 1 2530 713393011 713390482 0.000000e+00 4673.0
1 TraesCS3B01G468500 chr3B 78.392 1356 160 64 540 1813 713969333 713968029 0.000000e+00 758.0
2 TraesCS3B01G468500 chr3B 79.415 1025 137 40 540 1528 713988739 713987753 0.000000e+00 656.0
3 TraesCS3B01G468500 chr3B 77.938 970 106 57 765 1719 713493096 713492220 8.080000e-140 507.0
4 TraesCS3B01G468500 chr3A 89.828 2261 160 29 1 2226 673924503 673922278 0.000000e+00 2837.0
5 TraesCS3B01G468500 chr3A 77.696 1354 171 67 540 1817 674026081 674024783 0.000000e+00 706.0
6 TraesCS3B01G468500 chr3A 79.162 859 111 39 990 1821 674061254 674060437 1.330000e-147 532.0
7 TraesCS3B01G468500 chr3A 77.691 771 91 31 990 1704 674018066 674017321 1.820000e-106 396.0
8 TraesCS3B01G468500 chr3A 87.302 63 3 2 2164 2226 673922281 673922224 1.620000e-07 67.6
9 TraesCS3B01G468500 chr3D 90.331 2203 154 30 42 2226 538516748 538514587 0.000000e+00 2833.0
10 TraesCS3B01G468500 chr3D 78.216 1345 170 60 540 1813 538687974 538686682 0.000000e+00 747.0
11 TraesCS3B01G468500 chr3D 78.085 1337 156 64 540 1821 538700070 538698816 0.000000e+00 719.0
12 TraesCS3B01G468500 chr3D 80.663 543 89 12 1 535 7504925 7505459 8.430000e-110 407.0
13 TraesCS3B01G468500 chr1D 81.296 540 91 9 1 535 104298170 104297636 1.800000e-116 429.0
14 TraesCS3B01G468500 chr1A 80.891 539 93 8 1 535 494751485 494750953 1.400000e-112 416.0
15 TraesCS3B01G468500 chr1A 80.370 540 96 9 1 535 299266753 299266219 3.920000e-108 401.0
16 TraesCS3B01G468500 chr7B 79.963 534 97 9 7 535 242997419 242996891 3.950000e-103 385.0
17 TraesCS3B01G468500 chr5B 79.592 539 101 8 1 535 509658376 509657843 6.610000e-101 377.0
18 TraesCS3B01G468500 chr5B 96.000 75 3 0 2456 2530 222412109 222412183 3.420000e-24 122.0
19 TraesCS3B01G468500 chr2D 92.000 75 6 0 2456 2530 42737446 42737372 3.440000e-19 106.0
20 TraesCS3B01G468500 chr2D 74.877 203 35 8 1820 2016 61345845 61346037 7.500000e-11 78.7
21 TraesCS3B01G468500 chr6A 77.301 163 32 4 1858 2018 406144379 406144220 9.640000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G468500 chr3B 713390482 713393011 2529 True 4673.0 4673 100.000 1 2530 1 chr3B.!!$R1 2529
1 TraesCS3B01G468500 chr3B 713968029 713969333 1304 True 758.0 758 78.392 540 1813 1 chr3B.!!$R3 1273
2 TraesCS3B01G468500 chr3B 713987753 713988739 986 True 656.0 656 79.415 540 1528 1 chr3B.!!$R4 988
3 TraesCS3B01G468500 chr3B 713492220 713493096 876 True 507.0 507 77.938 765 1719 1 chr3B.!!$R2 954
4 TraesCS3B01G468500 chr3A 673922224 673924503 2279 True 1452.3 2837 88.565 1 2226 2 chr3A.!!$R4 2225
5 TraesCS3B01G468500 chr3A 674024783 674026081 1298 True 706.0 706 77.696 540 1817 1 chr3A.!!$R2 1277
6 TraesCS3B01G468500 chr3A 674060437 674061254 817 True 532.0 532 79.162 990 1821 1 chr3A.!!$R3 831
7 TraesCS3B01G468500 chr3A 674017321 674018066 745 True 396.0 396 77.691 990 1704 1 chr3A.!!$R1 714
8 TraesCS3B01G468500 chr3D 538514587 538516748 2161 True 2833.0 2833 90.331 42 2226 1 chr3D.!!$R1 2184
9 TraesCS3B01G468500 chr3D 538686682 538687974 1292 True 747.0 747 78.216 540 1813 1 chr3D.!!$R2 1273
10 TraesCS3B01G468500 chr3D 538698816 538700070 1254 True 719.0 719 78.085 540 1821 1 chr3D.!!$R3 1281
11 TraesCS3B01G468500 chr3D 7504925 7505459 534 False 407.0 407 80.663 1 535 1 chr3D.!!$F1 534
12 TraesCS3B01G468500 chr1D 104297636 104298170 534 True 429.0 429 81.296 1 535 1 chr1D.!!$R1 534
13 TraesCS3B01G468500 chr1A 494750953 494751485 532 True 416.0 416 80.891 1 535 1 chr1A.!!$R2 534
14 TraesCS3B01G468500 chr1A 299266219 299266753 534 True 401.0 401 80.370 1 535 1 chr1A.!!$R1 534
15 TraesCS3B01G468500 chr7B 242996891 242997419 528 True 385.0 385 79.963 7 535 1 chr7B.!!$R1 528
16 TraesCS3B01G468500 chr5B 509657843 509658376 533 True 377.0 377 79.592 1 535 1 chr5B.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.108138 GTGGCGAATGTGCTCCTACT 60.108 55.0 0.0 0.0 34.52 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2146 0.242017 GCGAGCAAGGCAAATCAGTT 59.758 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.387929 TCGTCGAGTGCTTCCAAACT 59.612 50.000 0.00 0.00 0.00 2.66
53 54 4.642429 AGTGCTTCCAAACTATCTCGTTT 58.358 39.130 0.00 0.00 37.58 3.60
93 94 1.672356 GTGTGGCGAATGTGCTCCT 60.672 57.895 0.00 0.00 34.52 3.69
96 97 0.108138 GTGGCGAATGTGCTCCTACT 60.108 55.000 0.00 0.00 34.52 2.57
135 136 1.211457 GGTGCTCCATGGTGAGAATCT 59.789 52.381 17.98 0.00 34.11 2.40
232 239 5.131475 AGGAAAAGTATATGAGCGGGGTAAA 59.869 40.000 0.00 0.00 0.00 2.01
261 268 2.224257 GGTTTCTTGCCATTGAGCCAAA 60.224 45.455 0.00 0.00 0.00 3.28
267 274 0.247460 GCCATTGAGCCAAAGGGAAC 59.753 55.000 3.99 0.00 33.44 3.62
314 321 7.232127 CCATTGCCAATAGAAAAGATGGTAGAT 59.768 37.037 0.00 0.00 35.34 1.98
318 325 6.514048 GCCAATAGAAAAGATGGTAGATGCAC 60.514 42.308 0.00 0.00 35.34 4.57
319 326 6.293081 CCAATAGAAAAGATGGTAGATGCACG 60.293 42.308 0.00 0.00 0.00 5.34
322 329 2.898729 AAGATGGTAGATGCACGGAG 57.101 50.000 0.00 0.00 0.00 4.63
371 378 1.659022 TCCCCGAACTCACCCAAATA 58.341 50.000 0.00 0.00 0.00 1.40
401 408 4.506802 GGAACCTTCCACTCATACCAAAGT 60.507 45.833 0.00 0.00 46.76 2.66
405 412 5.222130 ACCTTCCACTCATACCAAAGTCAAT 60.222 40.000 0.00 0.00 0.00 2.57
412 419 5.944007 ACTCATACCAAAGTCAATGTAACCC 59.056 40.000 0.00 0.00 0.00 4.11
413 420 6.134535 TCATACCAAAGTCAATGTAACCCT 57.865 37.500 0.00 0.00 0.00 4.34
458 466 2.041216 GGTTGAGTACACCAAATCCCCT 59.959 50.000 0.00 0.00 0.00 4.79
523 531 1.086634 GCTCCGGTCATCTTGTCTGC 61.087 60.000 0.00 0.00 0.00 4.26
529 537 0.247736 GTCATCTTGTCTGCTCCCGT 59.752 55.000 0.00 0.00 0.00 5.28
533 541 1.118965 TCTTGTCTGCTCCCGTCCAA 61.119 55.000 0.00 0.00 0.00 3.53
534 542 0.250295 CTTGTCTGCTCCCGTCCAAA 60.250 55.000 0.00 0.00 0.00 3.28
535 543 0.181587 TTGTCTGCTCCCGTCCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
536 544 0.250295 TGTCTGCTCCCGTCCAAAAG 60.250 55.000 0.00 0.00 0.00 2.27
537 545 0.955919 GTCTGCTCCCGTCCAAAAGG 60.956 60.000 0.00 0.00 0.00 3.11
538 546 1.073199 CTGCTCCCGTCCAAAAGGT 59.927 57.895 0.00 0.00 0.00 3.50
600 633 7.564793 CCGAGGATAATACATTTGGATATCCA 58.435 38.462 20.98 20.98 42.85 3.41
697 736 7.483307 GTGCATACATGGATTTTTATCACAGT 58.517 34.615 0.00 0.00 0.00 3.55
740 790 4.136796 GCCCACTAGATACAATCATGCAA 58.863 43.478 0.00 0.00 0.00 4.08
775 841 3.741805 TCACTACATCTCTTCGTGTCG 57.258 47.619 0.00 0.00 0.00 4.35
824 890 2.230025 AGAATCTCCTGTCAGTGACACG 59.770 50.000 22.06 17.63 37.67 4.49
889 960 3.489738 GCATGTTCATTATCCACTGGCAC 60.490 47.826 0.00 0.00 0.00 5.01
984 1077 2.546162 GGTAGCTACCTCTTCGGCATTC 60.546 54.545 31.88 4.08 43.10 2.67
985 1078 0.466124 AGCTACCTCTTCGGCATTCC 59.534 55.000 0.00 0.00 35.61 3.01
986 1079 0.178068 GCTACCTCTTCGGCATTCCA 59.822 55.000 0.00 0.00 35.61 3.53
1091 1207 1.377202 GGAACCATGAAGAGCGGCA 60.377 57.895 1.45 0.00 0.00 5.69
1126 1242 3.123273 AGGGAAAGTGGCTATGGTGTAT 58.877 45.455 0.00 0.00 0.00 2.29
1136 1252 4.471747 TGGCTATGGTGTATTCCAAGTACA 59.528 41.667 0.00 0.00 41.09 2.90
1141 1257 2.624636 GTGTATTCCAAGTACACCGGG 58.375 52.381 6.32 0.00 43.76 5.73
1303 1444 2.437343 CGTCCGAGAGCGCTTCAAC 61.437 63.158 13.26 10.84 35.83 3.18
1360 1506 4.021925 GCCGGTCAGTCCAGGCTT 62.022 66.667 1.90 0.00 45.46 4.35
1387 1535 9.217278 CAGGAGAGATTACATATTTGATGGAAG 57.783 37.037 0.00 0.00 0.00 3.46
1399 1547 5.762825 TTTGATGGAAGCATCTTCTATGC 57.237 39.130 9.62 0.00 44.85 3.14
1647 1808 4.277476 TGTTTTGGTCCAACACTCATCTT 58.723 39.130 19.24 0.00 0.00 2.40
1698 1866 3.703001 TTTGGATGTGGAGAACCTCTC 57.297 47.619 0.00 0.00 42.66 3.20
1707 1875 3.845860 TGGAGAACCTCTCTACAAGTGT 58.154 45.455 3.81 0.00 42.48 3.55
1723 1906 8.332464 TCTACAAGTGTCGTTTCAAAATAGTTG 58.668 33.333 0.00 0.00 0.00 3.16
1800 1983 2.106857 ACAATCCAACTCCACCGGTTTA 59.893 45.455 2.97 0.00 0.00 2.01
1844 2027 5.022021 CGGAAATGCTAAAAATCTGACGTC 58.978 41.667 9.11 9.11 0.00 4.34
1845 2028 5.022021 GGAAATGCTAAAAATCTGACGTCG 58.978 41.667 11.62 6.07 0.00 5.12
1846 2029 4.600012 AATGCTAAAAATCTGACGTCGG 57.400 40.909 18.66 18.66 0.00 4.79
1847 2030 3.306917 TGCTAAAAATCTGACGTCGGA 57.693 42.857 28.31 28.31 35.43 4.55
1848 2031 3.857052 TGCTAAAAATCTGACGTCGGAT 58.143 40.909 30.05 30.05 43.43 4.18
1849 2032 5.001237 TGCTAAAAATCTGACGTCGGATA 57.999 39.130 34.13 20.51 40.88 2.59
1850 2033 4.802039 TGCTAAAAATCTGACGTCGGATAC 59.198 41.667 34.13 20.81 40.88 2.24
1869 2052 2.716217 ACTCAGAGTTTTAGGCATGGC 58.284 47.619 12.14 12.14 0.00 4.40
1916 2102 5.742562 TGTTGGTATAGGGATGGGAAATT 57.257 39.130 0.00 0.00 0.00 1.82
1921 2107 7.086685 TGGTATAGGGATGGGAAATTTAGTC 57.913 40.000 0.00 0.00 0.00 2.59
1924 2110 2.174854 AGGGATGGGAAATTTAGTCGGG 59.825 50.000 0.00 0.00 0.00 5.14
1927 2113 3.630769 GGATGGGAAATTTAGTCGGGAAC 59.369 47.826 0.00 0.00 0.00 3.62
1928 2114 3.791953 TGGGAAATTTAGTCGGGAACA 57.208 42.857 0.00 0.00 0.00 3.18
1930 2116 4.668636 TGGGAAATTTAGTCGGGAACAAT 58.331 39.130 0.00 0.00 0.00 2.71
1933 2119 4.461431 GGAAATTTAGTCGGGAACAATGGT 59.539 41.667 0.00 0.00 0.00 3.55
1953 2139 7.732222 ATGGTAATTTCCTGGCAAAGAAATA 57.268 32.000 19.67 9.26 40.84 1.40
1960 2146 6.723298 TTCCTGGCAAAGAAATAAACTGAA 57.277 33.333 0.00 0.00 0.00 3.02
1963 2149 6.323739 TCCTGGCAAAGAAATAAACTGAAACT 59.676 34.615 0.00 0.00 0.00 2.66
1972 2158 7.955918 AGAAATAAACTGAAACTGATTTGCCT 58.044 30.769 0.00 0.00 0.00 4.75
1985 2171 1.391157 TTTGCCTTGCTCGCCAACTT 61.391 50.000 0.00 0.00 0.00 2.66
1988 2174 0.811281 GCCTTGCTCGCCAACTTAAT 59.189 50.000 0.00 0.00 0.00 1.40
1995 2181 2.417243 GCTCGCCAACTTAATTTGCCAT 60.417 45.455 0.16 0.00 0.00 4.40
2051 2245 4.676546 GGCATGCCTAAAAATCTGACTTC 58.323 43.478 29.98 0.00 0.00 3.01
2062 2256 6.927294 AAAATCTGACTTCCGTTGGATATC 57.073 37.500 0.00 0.00 0.00 1.63
2063 2257 4.608948 ATCTGACTTCCGTTGGATATCC 57.391 45.455 15.39 15.39 0.00 2.59
2107 2303 7.610580 AATCAAATTTACAGGGTTTTCCTCA 57.389 32.000 0.00 0.00 46.12 3.86
2115 2311 7.696992 TTACAGGGTTTTCCTCATAAATGTC 57.303 36.000 0.00 0.00 46.12 3.06
2142 2338 2.597578 ATTTTGTTTAGGCGGAGGGT 57.402 45.000 0.00 0.00 0.00 4.34
2149 2345 0.544697 TTAGGCGGAGGGTGGATTTC 59.455 55.000 0.00 0.00 0.00 2.17
2171 2367 4.885325 TCACTACATATAGCTTGTCACCGA 59.115 41.667 0.00 0.00 30.75 4.69
2208 2404 9.520204 TTTAGCTGAGTCATCTTTTTCTTTTTG 57.480 29.630 1.10 0.00 0.00 2.44
2226 2422 8.132995 TTCTTTTTGAAGAAAAGGAATACGTCC 58.867 33.333 10.35 0.00 40.38 4.79
2238 2434 4.932146 GGAATACGTCCCAAATTTCCATG 58.068 43.478 0.00 0.00 41.10 3.66
2241 2437 6.095720 GGAATACGTCCCAAATTTCCATGTAA 59.904 38.462 0.00 0.00 41.10 2.41
2242 2438 6.693315 ATACGTCCCAAATTTCCATGTAAG 57.307 37.500 0.00 0.00 0.00 2.34
2243 2439 4.658063 ACGTCCCAAATTTCCATGTAAGA 58.342 39.130 0.00 0.00 0.00 2.10
2244 2440 4.700213 ACGTCCCAAATTTCCATGTAAGAG 59.300 41.667 0.00 0.00 0.00 2.85
2245 2441 4.941263 CGTCCCAAATTTCCATGTAAGAGA 59.059 41.667 0.00 0.00 0.00 3.10
2246 2442 5.414454 CGTCCCAAATTTCCATGTAAGAGAA 59.586 40.000 0.00 0.00 0.00 2.87
2247 2443 6.072175 CGTCCCAAATTTCCATGTAAGAGAAA 60.072 38.462 0.00 0.00 34.26 2.52
2248 2444 7.090808 GTCCCAAATTTCCATGTAAGAGAAAC 58.909 38.462 0.00 0.00 32.67 2.78
2249 2445 6.210584 TCCCAAATTTCCATGTAAGAGAAACC 59.789 38.462 0.00 0.00 32.67 3.27
2250 2446 6.014669 CCCAAATTTCCATGTAAGAGAAACCA 60.015 38.462 0.00 0.00 32.67 3.67
2251 2447 7.441017 CCAAATTTCCATGTAAGAGAAACCAA 58.559 34.615 0.00 0.00 32.67 3.67
2252 2448 7.599998 CCAAATTTCCATGTAAGAGAAACCAAG 59.400 37.037 0.00 0.00 32.67 3.61
2253 2449 7.839680 AATTTCCATGTAAGAGAAACCAAGT 57.160 32.000 0.00 0.00 32.67 3.16
2255 2451 8.934023 ATTTCCATGTAAGAGAAACCAAGTTA 57.066 30.769 0.00 0.00 32.67 2.24
2256 2452 7.739498 TTCCATGTAAGAGAAACCAAGTTAC 57.261 36.000 0.00 0.00 0.00 2.50
2257 2453 6.833041 TCCATGTAAGAGAAACCAAGTTACA 58.167 36.000 0.00 0.00 37.83 2.41
2259 2455 7.606456 TCCATGTAAGAGAAACCAAGTTACATC 59.394 37.037 3.61 0.00 40.61 3.06
2260 2456 7.148239 CCATGTAAGAGAAACCAAGTTACATCC 60.148 40.741 3.61 0.00 40.61 3.51
2261 2457 6.833041 TGTAAGAGAAACCAAGTTACATCCA 58.167 36.000 0.00 0.00 30.53 3.41
2262 2458 7.284074 TGTAAGAGAAACCAAGTTACATCCAA 58.716 34.615 0.00 0.00 30.53 3.53
2263 2459 6.635030 AAGAGAAACCAAGTTACATCCAAC 57.365 37.500 0.00 0.00 0.00 3.77
2265 2461 6.126409 AGAGAAACCAAGTTACATCCAACAA 58.874 36.000 0.00 0.00 0.00 2.83
2267 2463 7.287696 AGAGAAACCAAGTTACATCCAACAAAT 59.712 33.333 0.00 0.00 0.00 2.32
2271 2467 8.472007 AACCAAGTTACATCCAACAAATAAGA 57.528 30.769 0.00 0.00 0.00 2.10
2274 2470 9.757227 CCAAGTTACATCCAACAAATAAGAAAA 57.243 29.630 0.00 0.00 0.00 2.29
2281 2477 9.480053 ACATCCAACAAATAAGAAAACATCAAG 57.520 29.630 0.00 0.00 0.00 3.02
2282 2478 7.945033 TCCAACAAATAAGAAAACATCAAGC 57.055 32.000 0.00 0.00 0.00 4.01
2283 2479 7.495901 TCCAACAAATAAGAAAACATCAAGCA 58.504 30.769 0.00 0.00 0.00 3.91
2284 2480 8.149647 TCCAACAAATAAGAAAACATCAAGCAT 58.850 29.630 0.00 0.00 0.00 3.79
2285 2481 8.437742 CCAACAAATAAGAAAACATCAAGCATC 58.562 33.333 0.00 0.00 0.00 3.91
2286 2482 8.980610 CAACAAATAAGAAAACATCAAGCATCA 58.019 29.630 0.00 0.00 0.00 3.07
2287 2483 9.545105 AACAAATAAGAAAACATCAAGCATCAA 57.455 25.926 0.00 0.00 0.00 2.57
2288 2484 9.545105 ACAAATAAGAAAACATCAAGCATCAAA 57.455 25.926 0.00 0.00 0.00 2.69
2293 2489 7.823149 AGAAAACATCAAGCATCAAATAAGC 57.177 32.000 0.00 0.00 0.00 3.09
2294 2490 7.609056 AGAAAACATCAAGCATCAAATAAGCT 58.391 30.769 0.00 0.00 41.03 3.74
2295 2491 7.544566 AGAAAACATCAAGCATCAAATAAGCTG 59.455 33.333 0.00 0.00 38.86 4.24
2296 2492 6.519679 AACATCAAGCATCAAATAAGCTGA 57.480 33.333 0.00 0.00 38.86 4.26
2297 2493 6.519679 ACATCAAGCATCAAATAAGCTGAA 57.480 33.333 0.00 0.00 38.86 3.02
2298 2494 6.927416 ACATCAAGCATCAAATAAGCTGAAA 58.073 32.000 0.00 0.00 38.86 2.69
2299 2495 7.380536 ACATCAAGCATCAAATAAGCTGAAAA 58.619 30.769 0.00 0.00 38.86 2.29
2300 2496 7.330208 ACATCAAGCATCAAATAAGCTGAAAAC 59.670 33.333 0.00 0.00 38.86 2.43
2301 2497 6.747125 TCAAGCATCAAATAAGCTGAAAACA 58.253 32.000 0.00 0.00 38.86 2.83
2302 2498 7.208777 TCAAGCATCAAATAAGCTGAAAACAA 58.791 30.769 0.00 0.00 38.86 2.83
2303 2499 7.710044 TCAAGCATCAAATAAGCTGAAAACAAA 59.290 29.630 0.00 0.00 38.86 2.83
2304 2500 8.336806 CAAGCATCAAATAAGCTGAAAACAAAA 58.663 29.630 0.00 0.00 38.86 2.44
2305 2501 7.854534 AGCATCAAATAAGCTGAAAACAAAAC 58.145 30.769 0.00 0.00 37.20 2.43
2306 2502 7.041848 AGCATCAAATAAGCTGAAAACAAAACC 60.042 33.333 0.00 0.00 37.20 3.27
2307 2503 6.820470 TCAAATAAGCTGAAAACAAAACCG 57.180 33.333 0.00 0.00 0.00 4.44
2308 2504 5.233263 TCAAATAAGCTGAAAACAAAACCGC 59.767 36.000 0.00 0.00 0.00 5.68
2309 2505 1.934589 AAGCTGAAAACAAAACCGCC 58.065 45.000 0.00 0.00 0.00 6.13
2310 2506 1.111277 AGCTGAAAACAAAACCGCCT 58.889 45.000 0.00 0.00 0.00 5.52
2311 2507 2.303175 AGCTGAAAACAAAACCGCCTA 58.697 42.857 0.00 0.00 0.00 3.93
2312 2508 2.890945 AGCTGAAAACAAAACCGCCTAT 59.109 40.909 0.00 0.00 0.00 2.57
2313 2509 2.986479 GCTGAAAACAAAACCGCCTATG 59.014 45.455 0.00 0.00 0.00 2.23
2314 2510 3.305064 GCTGAAAACAAAACCGCCTATGA 60.305 43.478 0.00 0.00 0.00 2.15
2315 2511 4.475944 CTGAAAACAAAACCGCCTATGAG 58.524 43.478 0.00 0.00 0.00 2.90
2316 2512 3.254657 TGAAAACAAAACCGCCTATGAGG 59.745 43.478 0.00 0.00 38.80 3.86
2317 2513 1.834188 AACAAAACCGCCTATGAGGG 58.166 50.000 0.00 0.00 35.37 4.30
2318 2514 0.696501 ACAAAACCGCCTATGAGGGT 59.303 50.000 0.00 0.00 35.37 4.34
2319 2515 1.094785 CAAAACCGCCTATGAGGGTG 58.905 55.000 0.00 0.00 35.37 4.61
2320 2516 0.696501 AAAACCGCCTATGAGGGTGT 59.303 50.000 0.00 0.00 35.37 4.16
2321 2517 1.575419 AAACCGCCTATGAGGGTGTA 58.425 50.000 0.00 0.00 35.37 2.90
2322 2518 1.120530 AACCGCCTATGAGGGTGTAG 58.879 55.000 0.00 0.00 35.37 2.74
2323 2519 0.032416 ACCGCCTATGAGGGTGTAGT 60.032 55.000 0.00 0.00 35.37 2.73
2324 2520 1.120530 CCGCCTATGAGGGTGTAGTT 58.879 55.000 0.00 0.00 35.37 2.24
2325 2521 2.313317 CCGCCTATGAGGGTGTAGTTA 58.687 52.381 0.00 0.00 35.37 2.24
2326 2522 2.035576 CCGCCTATGAGGGTGTAGTTAC 59.964 54.545 0.00 0.00 35.37 2.50
2327 2523 2.691526 CGCCTATGAGGGTGTAGTTACA 59.308 50.000 0.00 0.00 35.37 2.41
2328 2524 3.131577 CGCCTATGAGGGTGTAGTTACAA 59.868 47.826 0.00 0.00 35.22 2.41
2329 2525 4.382254 CGCCTATGAGGGTGTAGTTACAAA 60.382 45.833 0.00 0.00 35.22 2.83
2330 2526 5.493809 GCCTATGAGGGTGTAGTTACAAAA 58.506 41.667 0.00 0.00 35.22 2.44
2331 2527 5.353400 GCCTATGAGGGTGTAGTTACAAAAC 59.647 44.000 0.00 0.00 35.22 2.43
2332 2528 6.469410 CCTATGAGGGTGTAGTTACAAAACA 58.531 40.000 0.00 0.00 38.04 2.83
2333 2529 7.110155 CCTATGAGGGTGTAGTTACAAAACAT 58.890 38.462 0.00 0.00 38.04 2.71
2334 2530 8.262227 CCTATGAGGGTGTAGTTACAAAACATA 58.738 37.037 0.00 0.00 38.04 2.29
2335 2531 9.314321 CTATGAGGGTGTAGTTACAAAACATAG 57.686 37.037 14.64 14.64 38.04 2.23
2336 2532 5.935789 TGAGGGTGTAGTTACAAAACATAGC 59.064 40.000 0.00 0.00 38.04 2.97
2337 2533 6.123045 AGGGTGTAGTTACAAAACATAGCT 57.877 37.500 0.00 0.00 38.04 3.32
2338 2534 7.038870 TGAGGGTGTAGTTACAAAACATAGCTA 60.039 37.037 0.00 0.00 38.04 3.32
2339 2535 7.328737 AGGGTGTAGTTACAAAACATAGCTAG 58.671 38.462 0.00 0.00 38.04 3.42
2340 2536 7.038516 AGGGTGTAGTTACAAAACATAGCTAGT 60.039 37.037 0.00 0.00 38.04 2.57
2341 2537 7.277319 GGGTGTAGTTACAAAACATAGCTAGTC 59.723 40.741 0.00 0.00 38.04 2.59
2342 2538 7.816031 GGTGTAGTTACAAAACATAGCTAGTCA 59.184 37.037 0.00 0.00 38.04 3.41
2343 2539 9.367444 GTGTAGTTACAAAACATAGCTAGTCAT 57.633 33.333 0.00 0.00 38.04 3.06
2344 2540 9.582431 TGTAGTTACAAAACATAGCTAGTCATC 57.418 33.333 0.00 0.00 38.12 2.92
2345 2541 9.804758 GTAGTTACAAAACATAGCTAGTCATCT 57.195 33.333 0.00 0.00 38.12 2.90
2346 2542 8.709386 AGTTACAAAACATAGCTAGTCATCTG 57.291 34.615 0.00 0.00 38.12 2.90
2347 2543 8.531982 AGTTACAAAACATAGCTAGTCATCTGA 58.468 33.333 0.00 0.00 38.12 3.27
2348 2544 9.319143 GTTACAAAACATAGCTAGTCATCTGAT 57.681 33.333 0.00 0.00 35.56 2.90
2349 2545 9.890629 TTACAAAACATAGCTAGTCATCTGATT 57.109 29.630 0.00 0.00 0.00 2.57
2350 2546 8.206325 ACAAAACATAGCTAGTCATCTGATTG 57.794 34.615 0.00 5.76 0.00 2.67
2351 2547 6.857777 AAACATAGCTAGTCATCTGATTGC 57.142 37.500 0.00 0.00 0.00 3.56
2352 2548 4.892433 ACATAGCTAGTCATCTGATTGCC 58.108 43.478 0.00 0.00 0.00 4.52
2353 2549 4.592351 ACATAGCTAGTCATCTGATTGCCT 59.408 41.667 0.00 0.00 0.00 4.75
2354 2550 3.472283 AGCTAGTCATCTGATTGCCTG 57.528 47.619 0.00 0.00 0.00 4.85
2355 2551 3.036819 AGCTAGTCATCTGATTGCCTGA 58.963 45.455 0.00 0.00 0.00 3.86
2356 2552 3.647113 AGCTAGTCATCTGATTGCCTGAT 59.353 43.478 0.00 0.00 34.30 2.90
2357 2553 4.837298 AGCTAGTCATCTGATTGCCTGATA 59.163 41.667 0.00 0.00 32.96 2.15
2358 2554 5.306419 AGCTAGTCATCTGATTGCCTGATAA 59.694 40.000 0.00 0.00 32.96 1.75
2359 2555 6.013553 AGCTAGTCATCTGATTGCCTGATAAT 60.014 38.462 0.00 0.00 32.96 1.28
2360 2556 7.179872 AGCTAGTCATCTGATTGCCTGATAATA 59.820 37.037 0.00 0.00 32.96 0.98
2361 2557 7.492020 GCTAGTCATCTGATTGCCTGATAATAG 59.508 40.741 0.00 0.00 32.96 1.73
2362 2558 7.550597 AGTCATCTGATTGCCTGATAATAGA 57.449 36.000 0.00 0.00 32.96 1.98
2363 2559 7.613585 AGTCATCTGATTGCCTGATAATAGAG 58.386 38.462 0.00 0.00 32.96 2.43
2364 2560 6.313411 GTCATCTGATTGCCTGATAATAGAGC 59.687 42.308 0.00 0.00 32.96 4.09
2365 2561 6.212993 TCATCTGATTGCCTGATAATAGAGCT 59.787 38.462 0.00 0.00 32.96 4.09
2366 2562 7.398332 TCATCTGATTGCCTGATAATAGAGCTA 59.602 37.037 0.00 0.00 32.96 3.32
2367 2563 7.167924 TCTGATTGCCTGATAATAGAGCTAG 57.832 40.000 0.00 0.00 0.00 3.42
2368 2564 5.728471 TGATTGCCTGATAATAGAGCTAGC 58.272 41.667 6.62 6.62 0.00 3.42
2369 2565 5.246883 TGATTGCCTGATAATAGAGCTAGCA 59.753 40.000 18.83 0.00 0.00 3.49
2370 2566 4.527509 TGCCTGATAATAGAGCTAGCAC 57.472 45.455 18.83 11.32 0.00 4.40
2371 2567 3.259374 TGCCTGATAATAGAGCTAGCACC 59.741 47.826 18.83 8.30 0.00 5.01
2372 2568 3.674682 GCCTGATAATAGAGCTAGCACCG 60.675 52.174 18.83 0.00 0.00 4.94
2373 2569 3.506810 CTGATAATAGAGCTAGCACCGC 58.493 50.000 18.83 3.09 0.00 5.68
2374 2570 2.231478 TGATAATAGAGCTAGCACCGCC 59.769 50.000 18.83 0.26 0.00 6.13
2375 2571 0.966920 TAATAGAGCTAGCACCGCCC 59.033 55.000 18.83 0.00 0.00 6.13
2376 2572 1.048724 AATAGAGCTAGCACCGCCCA 61.049 55.000 18.83 0.00 0.00 5.36
2377 2573 1.749334 ATAGAGCTAGCACCGCCCAC 61.749 60.000 18.83 0.00 0.00 4.61
2378 2574 4.840005 GAGCTAGCACCGCCCACC 62.840 72.222 18.83 0.00 0.00 4.61
2400 2596 2.511600 GGACACGATTCCGCCAGG 60.512 66.667 0.00 0.00 39.95 4.45
2401 2597 2.264794 GACACGATTCCGCCAGGT 59.735 61.111 0.00 0.00 39.95 4.00
2402 2598 2.047274 ACACGATTCCGCCAGGTG 60.047 61.111 0.00 0.00 39.95 4.00
2403 2599 2.047274 CACGATTCCGCCAGGTGT 60.047 61.111 0.00 0.00 39.95 4.16
2404 2600 1.671054 CACGATTCCGCCAGGTGTT 60.671 57.895 0.00 0.00 39.95 3.32
2405 2601 1.671054 ACGATTCCGCCAGGTGTTG 60.671 57.895 0.00 0.00 39.95 3.33
2413 2609 4.421365 CCAGGTGTTGGGACATGG 57.579 61.111 0.00 0.00 43.75 3.66
2414 2610 1.304381 CCAGGTGTTGGGACATGGG 60.304 63.158 0.00 0.00 43.75 4.00
2415 2611 1.460255 CAGGTGTTGGGACATGGGT 59.540 57.895 0.00 0.00 39.30 4.51
2416 2612 0.609131 CAGGTGTTGGGACATGGGTC 60.609 60.000 0.00 0.00 43.55 4.46
2435 2631 3.478540 CCCCCGAAGAATTCTCCAC 57.521 57.895 8.78 3.07 44.75 4.02
2436 2632 0.618458 CCCCCGAAGAATTCTCCACA 59.382 55.000 8.78 0.00 44.75 4.17
2437 2633 1.212935 CCCCCGAAGAATTCTCCACAT 59.787 52.381 8.78 0.00 44.75 3.21
2438 2634 2.357154 CCCCCGAAGAATTCTCCACATT 60.357 50.000 8.78 0.00 44.75 2.71
2439 2635 3.356290 CCCCGAAGAATTCTCCACATTT 58.644 45.455 8.78 0.00 44.75 2.32
2440 2636 4.523083 CCCCGAAGAATTCTCCACATTTA 58.477 43.478 8.78 0.00 44.75 1.40
2441 2637 4.335594 CCCCGAAGAATTCTCCACATTTAC 59.664 45.833 8.78 0.00 44.75 2.01
2442 2638 4.034048 CCCGAAGAATTCTCCACATTTACG 59.966 45.833 8.78 4.27 44.75 3.18
2443 2639 4.868171 CCGAAGAATTCTCCACATTTACGA 59.132 41.667 8.78 0.00 44.75 3.43
2444 2640 5.523916 CCGAAGAATTCTCCACATTTACGAT 59.476 40.000 8.78 0.00 44.75 3.73
2445 2641 6.037172 CCGAAGAATTCTCCACATTTACGATT 59.963 38.462 8.78 0.00 44.75 3.34
2446 2642 7.223971 CCGAAGAATTCTCCACATTTACGATTA 59.776 37.037 8.78 0.00 44.75 1.75
2447 2643 8.269424 CGAAGAATTCTCCACATTTACGATTAG 58.731 37.037 8.78 0.00 44.75 1.73
2448 2644 9.314321 GAAGAATTCTCCACATTTACGATTAGA 57.686 33.333 8.78 0.00 43.23 2.10
2449 2645 8.649973 AGAATTCTCCACATTTACGATTAGAC 57.350 34.615 0.88 0.00 0.00 2.59
2450 2646 8.478877 AGAATTCTCCACATTTACGATTAGACT 58.521 33.333 0.88 0.00 0.00 3.24
2451 2647 9.745880 GAATTCTCCACATTTACGATTAGACTA 57.254 33.333 0.00 0.00 0.00 2.59
2452 2648 9.530633 AATTCTCCACATTTACGATTAGACTAC 57.469 33.333 0.00 0.00 0.00 2.73
2453 2649 7.876936 TCTCCACATTTACGATTAGACTACT 57.123 36.000 0.00 0.00 0.00 2.57
2454 2650 7.704271 TCTCCACATTTACGATTAGACTACTG 58.296 38.462 0.00 0.00 0.00 2.74
2455 2651 7.555195 TCTCCACATTTACGATTAGACTACTGA 59.445 37.037 0.00 0.00 0.00 3.41
2456 2652 8.234136 TCCACATTTACGATTAGACTACTGAT 57.766 34.615 0.00 0.00 0.00 2.90
2457 2653 8.350722 TCCACATTTACGATTAGACTACTGATC 58.649 37.037 0.00 0.00 36.29 2.92
2458 2654 8.135529 CCACATTTACGATTAGACTACTGATCA 58.864 37.037 0.00 0.00 38.51 2.92
2459 2655 9.175060 CACATTTACGATTAGACTACTGATCAG 57.825 37.037 21.37 21.37 38.51 2.90
2460 2656 9.121658 ACATTTACGATTAGACTACTGATCAGA 57.878 33.333 29.27 11.66 38.51 3.27
2461 2657 9.388346 CATTTACGATTAGACTACTGATCAGAC 57.612 37.037 29.27 15.68 38.51 3.51
2462 2658 8.734218 TTTACGATTAGACTACTGATCAGACT 57.266 34.615 29.27 20.89 38.51 3.24
2463 2659 9.828039 TTTACGATTAGACTACTGATCAGACTA 57.172 33.333 29.27 20.01 38.51 2.59
2464 2660 7.956420 ACGATTAGACTACTGATCAGACTAG 57.044 40.000 29.27 21.31 38.51 2.57
2465 2661 7.502696 ACGATTAGACTACTGATCAGACTAGT 58.497 38.462 29.27 24.14 38.51 2.57
2466 2662 7.654520 ACGATTAGACTACTGATCAGACTAGTC 59.345 40.741 29.27 29.27 38.51 2.59
2467 2663 7.117236 CGATTAGACTACTGATCAGACTAGTCC 59.883 44.444 31.00 21.65 37.56 3.85
2468 2664 5.702065 AGACTACTGATCAGACTAGTCCA 57.298 43.478 31.00 9.10 37.56 4.02
2469 2665 5.433526 AGACTACTGATCAGACTAGTCCAC 58.566 45.833 31.00 18.41 37.56 4.02
2470 2666 5.190925 AGACTACTGATCAGACTAGTCCACT 59.809 44.000 31.00 19.82 37.56 4.00
2471 2667 5.189928 ACTACTGATCAGACTAGTCCACTG 58.810 45.833 29.27 11.39 0.00 3.66
2472 2668 4.308526 ACTGATCAGACTAGTCCACTGA 57.691 45.455 29.27 16.25 43.25 3.41
2473 2669 4.013728 ACTGATCAGACTAGTCCACTGAC 58.986 47.826 29.27 11.20 42.18 3.51
2474 2670 3.010420 TGATCAGACTAGTCCACTGACG 58.990 50.000 19.38 0.24 46.51 4.35
2475 2671 2.563261 TCAGACTAGTCCACTGACGT 57.437 50.000 19.38 0.00 46.51 4.34
2476 2672 3.690475 TCAGACTAGTCCACTGACGTA 57.310 47.619 19.38 0.00 46.51 3.57
2477 2673 3.332919 TCAGACTAGTCCACTGACGTAC 58.667 50.000 19.38 0.00 46.51 3.67
2478 2674 2.093941 CAGACTAGTCCACTGACGTACG 59.906 54.545 19.38 15.01 46.51 3.67
2479 2675 2.028658 AGACTAGTCCACTGACGTACGA 60.029 50.000 24.41 0.00 46.51 3.43
2480 2676 2.935201 GACTAGTCCACTGACGTACGAT 59.065 50.000 24.41 6.13 46.51 3.73
2481 2677 3.341823 ACTAGTCCACTGACGTACGATT 58.658 45.455 24.41 0.00 46.51 3.34
2482 2678 2.631418 AGTCCACTGACGTACGATTG 57.369 50.000 24.41 12.86 46.51 2.67
2483 2679 1.201647 AGTCCACTGACGTACGATTGG 59.798 52.381 24.41 19.95 46.51 3.16
2484 2680 0.528924 TCCACTGACGTACGATTGGG 59.471 55.000 24.41 15.63 0.00 4.12
2485 2681 0.528924 CCACTGACGTACGATTGGGA 59.471 55.000 24.41 0.00 0.00 4.37
2486 2682 1.136305 CCACTGACGTACGATTGGGAT 59.864 52.381 24.41 0.00 0.00 3.85
2487 2683 2.418197 CCACTGACGTACGATTGGGATT 60.418 50.000 24.41 0.00 0.00 3.01
2488 2684 2.603110 CACTGACGTACGATTGGGATTG 59.397 50.000 24.41 3.90 0.00 2.67
2489 2685 2.494471 ACTGACGTACGATTGGGATTGA 59.506 45.455 24.41 0.00 0.00 2.57
2490 2686 3.132289 ACTGACGTACGATTGGGATTGAT 59.868 43.478 24.41 0.00 0.00 2.57
2491 2687 3.713288 TGACGTACGATTGGGATTGATC 58.287 45.455 24.41 4.67 0.00 2.92
2492 2688 3.383505 TGACGTACGATTGGGATTGATCT 59.616 43.478 24.41 0.00 0.00 2.75
2493 2689 3.717707 ACGTACGATTGGGATTGATCTG 58.282 45.455 24.41 0.00 0.00 2.90
2494 2690 3.383505 ACGTACGATTGGGATTGATCTGA 59.616 43.478 24.41 0.00 0.00 3.27
2495 2691 3.983988 CGTACGATTGGGATTGATCTGAG 59.016 47.826 10.44 0.00 0.00 3.35
2496 2692 4.499865 CGTACGATTGGGATTGATCTGAGT 60.500 45.833 10.44 0.00 0.00 3.41
2497 2693 3.801698 ACGATTGGGATTGATCTGAGTG 58.198 45.455 0.00 0.00 0.00 3.51
2498 2694 3.198635 ACGATTGGGATTGATCTGAGTGT 59.801 43.478 0.00 0.00 0.00 3.55
2499 2695 3.806521 CGATTGGGATTGATCTGAGTGTC 59.193 47.826 0.00 0.00 0.00 3.67
2500 2696 3.634397 TTGGGATTGATCTGAGTGTCC 57.366 47.619 0.00 0.00 0.00 4.02
2501 2697 1.482182 TGGGATTGATCTGAGTGTCCG 59.518 52.381 0.00 0.00 0.00 4.79
2502 2698 1.757118 GGGATTGATCTGAGTGTCCGA 59.243 52.381 0.00 0.00 0.00 4.55
2503 2699 2.366916 GGGATTGATCTGAGTGTCCGAT 59.633 50.000 0.00 0.00 0.00 4.18
2504 2700 3.553922 GGGATTGATCTGAGTGTCCGATC 60.554 52.174 0.00 2.37 35.33 3.69
2505 2701 3.320541 GGATTGATCTGAGTGTCCGATCT 59.679 47.826 9.03 0.00 35.68 2.75
2506 2702 4.520874 GGATTGATCTGAGTGTCCGATCTA 59.479 45.833 9.03 3.42 35.68 1.98
2507 2703 5.010112 GGATTGATCTGAGTGTCCGATCTAA 59.990 44.000 9.03 4.04 35.68 2.10
2508 2704 6.295011 GGATTGATCTGAGTGTCCGATCTAAT 60.295 42.308 9.03 7.38 35.68 1.73
2509 2705 7.094162 GGATTGATCTGAGTGTCCGATCTAATA 60.094 40.741 9.03 0.00 35.68 0.98
2510 2706 6.809630 TGATCTGAGTGTCCGATCTAATAG 57.190 41.667 9.03 0.00 35.68 1.73
2511 2707 5.707764 TGATCTGAGTGTCCGATCTAATAGG 59.292 44.000 9.03 0.00 35.68 2.57
2512 2708 3.821600 TCTGAGTGTCCGATCTAATAGGC 59.178 47.826 0.00 0.00 0.00 3.93
2513 2709 3.823873 CTGAGTGTCCGATCTAATAGGCT 59.176 47.826 0.00 0.00 0.00 4.58
2514 2710 4.981812 TGAGTGTCCGATCTAATAGGCTA 58.018 43.478 0.00 0.00 0.00 3.93
2515 2711 5.004448 TGAGTGTCCGATCTAATAGGCTAG 58.996 45.833 0.00 0.00 0.00 3.42
2516 2712 3.759618 AGTGTCCGATCTAATAGGCTAGC 59.240 47.826 6.04 6.04 0.00 3.42
2517 2713 3.759618 GTGTCCGATCTAATAGGCTAGCT 59.240 47.826 15.72 3.22 0.00 3.32
2518 2714 3.759086 TGTCCGATCTAATAGGCTAGCTG 59.241 47.826 15.72 0.00 0.00 4.24
2519 2715 3.129638 GTCCGATCTAATAGGCTAGCTGG 59.870 52.174 15.72 0.00 0.00 4.85
2520 2716 3.010250 TCCGATCTAATAGGCTAGCTGGA 59.990 47.826 15.72 2.17 0.00 3.86
2521 2717 3.129638 CCGATCTAATAGGCTAGCTGGAC 59.870 52.174 15.72 0.00 0.00 4.02
2522 2718 3.181505 CGATCTAATAGGCTAGCTGGACG 60.182 52.174 15.72 5.41 0.00 4.79
2523 2719 3.225177 TCTAATAGGCTAGCTGGACGT 57.775 47.619 15.72 0.00 0.00 4.34
2524 2720 2.885266 TCTAATAGGCTAGCTGGACGTG 59.115 50.000 15.72 0.52 0.00 4.49
2525 2721 0.753262 AATAGGCTAGCTGGACGTGG 59.247 55.000 15.72 0.00 0.00 4.94
2526 2722 1.115930 ATAGGCTAGCTGGACGTGGG 61.116 60.000 15.72 0.00 0.00 4.61
2527 2723 4.840005 GGCTAGCTGGACGTGGGC 62.840 72.222 15.72 0.00 0.00 5.36
2528 2724 4.840005 GCTAGCTGGACGTGGGCC 62.840 72.222 7.70 0.00 0.00 5.80
2529 2725 3.077556 CTAGCTGGACGTGGGCCT 61.078 66.667 4.53 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.130633 CTCGACGAATGGGCATTATTCA 58.869 45.455 0.00 0.00 34.90 2.57
44 45 0.176910 TGGATGCCGCAAACGAGATA 59.823 50.000 0.00 0.00 43.93 1.98
93 94 5.172934 CCTTAGGCAATTTGTCACGTAGTA 58.827 41.667 3.49 0.00 41.61 1.82
96 97 3.749088 CACCTTAGGCAATTTGTCACGTA 59.251 43.478 3.49 0.00 0.00 3.57
135 136 8.054152 TGCATTCACAAGATTAAGCTCAATAA 57.946 30.769 0.00 0.00 0.00 1.40
302 309 2.158900 CCTCCGTGCATCTACCATCTTT 60.159 50.000 0.00 0.00 0.00 2.52
304 311 1.043816 CCTCCGTGCATCTACCATCT 58.956 55.000 0.00 0.00 0.00 2.90
314 321 2.583441 CCTCAACCTCCTCCGTGCA 61.583 63.158 0.00 0.00 0.00 4.57
318 325 1.609501 TGGACCTCAACCTCCTCCG 60.610 63.158 0.00 0.00 0.00 4.63
319 326 1.554583 GGTGGACCTCAACCTCCTCC 61.555 65.000 0.00 0.00 37.86 4.30
322 329 4.234673 AGGTGGACCTCAACCTCC 57.765 61.111 0.00 0.00 44.77 4.30
401 408 2.042297 TGGGCATTGAGGGTTACATTGA 59.958 45.455 0.00 0.00 0.00 2.57
405 412 1.890573 GCTTGGGCATTGAGGGTTACA 60.891 52.381 0.00 0.00 38.54 2.41
433 440 2.536761 TTTGGTGTACTCAACCTCGG 57.463 50.000 2.84 0.00 0.00 4.63
458 466 0.323302 TGTGTCGGCCAAAGCATCTA 59.677 50.000 2.24 0.00 42.56 1.98
523 531 3.560636 ATCATACCTTTTGGACGGGAG 57.439 47.619 0.00 0.00 44.07 4.30
529 537 5.016173 CCCTTGTGAATCATACCTTTTGGA 58.984 41.667 0.00 0.00 44.07 3.53
533 541 6.410853 CCCTATCCCTTGTGAATCATACCTTT 60.411 42.308 0.00 0.00 0.00 3.11
534 542 5.073691 CCCTATCCCTTGTGAATCATACCTT 59.926 44.000 0.00 0.00 0.00 3.50
535 543 4.599241 CCCTATCCCTTGTGAATCATACCT 59.401 45.833 0.00 0.00 0.00 3.08
536 544 4.597507 TCCCTATCCCTTGTGAATCATACC 59.402 45.833 0.00 0.00 0.00 2.73
537 545 5.280215 CCTCCCTATCCCTTGTGAATCATAC 60.280 48.000 0.00 0.00 0.00 2.39
538 546 4.846367 CCTCCCTATCCCTTGTGAATCATA 59.154 45.833 0.00 0.00 0.00 2.15
616 651 2.039746 TCGCCCTTTCCAGATCAGAAAA 59.960 45.455 10.91 0.82 33.06 2.29
697 736 5.338544 GGGCCATGATAATATACGGTTGGTA 60.339 44.000 4.39 0.00 35.11 3.25
740 790 4.787551 TGTAGTGAATCTGGTTTGTGGTT 58.212 39.130 0.00 0.00 0.00 3.67
775 841 1.602771 GGAGGGTCCAGTGGTAAGC 59.397 63.158 9.54 0.00 36.28 3.09
824 890 1.815003 CTGGCAAAGTGAATCTGGGAC 59.185 52.381 0.00 0.00 0.00 4.46
889 960 2.432444 TGTAACATTCTGGCCTTTCGG 58.568 47.619 3.32 0.00 0.00 4.30
901 979 5.536161 GGCCATAGACATTCCATGTAACATT 59.464 40.000 0.00 0.00 45.03 2.71
906 984 4.202461 GGAAGGCCATAGACATTCCATGTA 60.202 45.833 5.01 0.00 45.03 2.29
984 1077 1.307355 TGCGATGCTGGAATGTGTGG 61.307 55.000 0.00 0.00 0.00 4.17
985 1078 0.522626 TTGCGATGCTGGAATGTGTG 59.477 50.000 0.00 0.00 0.00 3.82
986 1079 1.200716 CTTTGCGATGCTGGAATGTGT 59.799 47.619 0.00 0.00 0.00 3.72
1091 1207 0.479589 TTCCCTTTGATCCCCCTGGT 60.480 55.000 0.00 0.00 0.00 4.00
1126 1242 1.072648 CCTTTCCCGGTGTACTTGGAA 59.927 52.381 0.00 0.00 35.16 3.53
1141 1257 3.385384 GGCTTGGCCTGCCCTTTC 61.385 66.667 23.96 4.41 46.69 2.62
1189 1313 2.119495 GAAGAAGGATACCTGGGCTGA 58.881 52.381 0.00 0.00 32.13 4.26
1303 1444 2.284684 GCTCATCATCTTCTGCTCGTTG 59.715 50.000 0.00 0.00 0.00 4.10
1360 1506 8.496534 TCCATCAAATATGTAATCTCTCCTGA 57.503 34.615 0.00 0.00 0.00 3.86
1387 1535 1.540267 CCATGGCTGCATAGAAGATGC 59.460 52.381 0.00 2.55 44.76 3.91
1399 1547 6.935167 TGTATACTGTATGTATCCATGGCTG 58.065 40.000 6.96 0.00 41.64 4.85
1647 1808 6.744112 ACTGCAATTTAAAAATTCTCGGTCA 58.256 32.000 0.00 0.00 36.52 4.02
1680 1848 2.630889 AGAGAGGTTCTCCACATCCA 57.369 50.000 2.60 0.00 44.42 3.41
1698 1866 7.586300 CCAACTATTTTGAAACGACACTTGTAG 59.414 37.037 0.00 0.00 0.00 2.74
1707 1875 8.934507 AAATGTTTCCAACTATTTTGAAACGA 57.065 26.923 14.02 7.21 44.64 3.85
1723 1906 5.754890 AGCAAACACAAGATGAAATGTTTCC 59.245 36.000 3.26 0.00 41.98 3.13
1781 1964 2.640826 TCTAAACCGGTGGAGTTGGATT 59.359 45.455 8.52 0.00 0.00 3.01
1800 1983 5.128827 TCCGTAAATAAGAGGTGCTTCATCT 59.871 40.000 0.00 0.00 38.95 2.90
1844 2027 4.386867 TGCCTAAAACTCTGAGTATCCG 57.613 45.455 11.30 0.87 0.00 4.18
1845 2028 5.059833 CCATGCCTAAAACTCTGAGTATCC 58.940 45.833 11.30 0.00 0.00 2.59
1846 2029 4.513318 GCCATGCCTAAAACTCTGAGTATC 59.487 45.833 11.30 0.00 0.00 2.24
1847 2030 4.080356 TGCCATGCCTAAAACTCTGAGTAT 60.080 41.667 11.30 6.03 0.00 2.12
1848 2031 3.263170 TGCCATGCCTAAAACTCTGAGTA 59.737 43.478 11.30 0.00 0.00 2.59
1849 2032 2.040278 TGCCATGCCTAAAACTCTGAGT 59.960 45.455 4.06 4.06 0.00 3.41
1850 2033 2.715046 TGCCATGCCTAAAACTCTGAG 58.285 47.619 2.45 2.45 0.00 3.35
1882 2068 7.072562 TCCCTATACCAACATAAATTGCCAAT 58.927 34.615 0.00 0.00 0.00 3.16
1883 2069 6.436027 TCCCTATACCAACATAAATTGCCAA 58.564 36.000 0.00 0.00 0.00 4.52
1902 2088 3.393278 CCCGACTAAATTTCCCATCCCTA 59.607 47.826 0.00 0.00 0.00 3.53
1916 2102 5.648960 GGAAATTACCATTGTTCCCGACTAA 59.351 40.000 0.00 0.00 34.62 2.24
1921 2107 3.130340 CCAGGAAATTACCATTGTTCCCG 59.870 47.826 0.00 0.00 40.42 5.14
1924 2110 4.799564 TGCCAGGAAATTACCATTGTTC 57.200 40.909 0.00 0.00 0.00 3.18
1927 2113 5.404466 TCTTTGCCAGGAAATTACCATTG 57.596 39.130 0.00 0.00 0.00 2.82
1928 2114 6.432403 TTTCTTTGCCAGGAAATTACCATT 57.568 33.333 0.00 0.00 0.00 3.16
1930 2116 7.546250 TTATTTCTTTGCCAGGAAATTACCA 57.454 32.000 12.24 0.00 40.91 3.25
1933 2119 8.865090 TCAGTTTATTTCTTTGCCAGGAAATTA 58.135 29.630 12.24 2.22 40.91 1.40
1953 2139 4.122046 GCAAGGCAAATCAGTTTCAGTTT 58.878 39.130 0.00 0.00 0.00 2.66
1960 2146 0.242017 GCGAGCAAGGCAAATCAGTT 59.758 50.000 0.00 0.00 0.00 3.16
1963 2149 1.603171 TGGCGAGCAAGGCAAATCA 60.603 52.632 5.26 0.00 43.90 2.57
1972 2158 2.609244 GGCAAATTAAGTTGGCGAGCAA 60.609 45.455 23.51 0.00 43.18 3.91
1985 2171 4.075682 TGTTTGTCGAGGATGGCAAATTA 58.924 39.130 0.00 0.00 34.09 1.40
1988 2174 1.974265 TGTTTGTCGAGGATGGCAAA 58.026 45.000 0.00 0.00 0.00 3.68
1995 2181 4.075682 TGGCAAATTATGTTTGTCGAGGA 58.924 39.130 0.00 0.00 36.86 3.71
2023 2216 4.037208 CAGATTTTTAGGCATGCCGAATCT 59.963 41.667 32.06 32.06 41.95 2.40
2028 2221 2.684881 AGTCAGATTTTTAGGCATGCCG 59.315 45.455 30.50 13.32 41.95 5.69
2051 2245 1.370064 GGACCCGGATATCCAACGG 59.630 63.158 21.70 17.96 46.79 4.44
2062 2256 3.588210 ATGGTTAAATAAGGGACCCGG 57.412 47.619 4.40 0.00 0.00 5.73
2063 2257 6.300703 TGATTATGGTTAAATAAGGGACCCG 58.699 40.000 4.40 0.00 0.00 5.28
2115 2311 4.638421 TCCGCCTAAACAAAATATCCAGTG 59.362 41.667 0.00 0.00 0.00 3.66
2132 2328 1.923395 TGAAATCCACCCTCCGCCT 60.923 57.895 0.00 0.00 0.00 5.52
2134 2330 0.539986 TAGTGAAATCCACCCTCCGC 59.460 55.000 0.00 0.00 46.87 5.54
2142 2338 7.710907 GTGACAAGCTATATGTAGTGAAATCCA 59.289 37.037 0.00 0.00 0.00 3.41
2149 2345 5.183014 TCGGTGACAAGCTATATGTAGTG 57.817 43.478 0.00 0.00 0.00 2.74
2202 2398 6.861572 GGGACGTATTCCTTTTCTTCAAAAAG 59.138 38.462 0.00 3.79 45.09 2.27
2204 2400 5.828859 TGGGACGTATTCCTTTTCTTCAAAA 59.171 36.000 0.00 0.00 45.09 2.44
2208 2404 5.952526 TTTGGGACGTATTCCTTTTCTTC 57.047 39.130 0.00 0.00 45.09 2.87
2222 2418 4.941263 TCTCTTACATGGAAATTTGGGACG 59.059 41.667 0.00 0.00 0.00 4.79
2226 2422 6.991938 TGGTTTCTCTTACATGGAAATTTGG 58.008 36.000 0.00 0.00 32.71 3.28
2228 2424 8.250143 ACTTGGTTTCTCTTACATGGAAATTT 57.750 30.769 0.00 0.00 32.71 1.82
2229 2425 7.839680 ACTTGGTTTCTCTTACATGGAAATT 57.160 32.000 0.00 0.00 32.71 1.82
2230 2426 7.839680 AACTTGGTTTCTCTTACATGGAAAT 57.160 32.000 0.00 0.00 32.71 2.17
2232 2428 7.284074 TGTAACTTGGTTTCTCTTACATGGAA 58.716 34.615 0.00 0.00 0.00 3.53
2233 2429 6.833041 TGTAACTTGGTTTCTCTTACATGGA 58.167 36.000 0.00 0.00 0.00 3.41
2234 2430 7.148239 GGATGTAACTTGGTTTCTCTTACATGG 60.148 40.741 6.17 0.00 37.88 3.66
2235 2431 7.390440 TGGATGTAACTTGGTTTCTCTTACATG 59.610 37.037 6.17 0.00 37.88 3.21
2238 2434 7.227910 TGTTGGATGTAACTTGGTTTCTCTTAC 59.772 37.037 0.00 0.00 0.00 2.34
2241 2437 5.690865 TGTTGGATGTAACTTGGTTTCTCT 58.309 37.500 0.00 0.00 0.00 3.10
2242 2438 6.385649 TTGTTGGATGTAACTTGGTTTCTC 57.614 37.500 0.00 0.00 0.00 2.87
2243 2439 6.783708 TTTGTTGGATGTAACTTGGTTTCT 57.216 33.333 0.00 0.00 0.00 2.52
2244 2440 9.191995 CTTATTTGTTGGATGTAACTTGGTTTC 57.808 33.333 0.00 0.00 0.00 2.78
2245 2441 8.919145 TCTTATTTGTTGGATGTAACTTGGTTT 58.081 29.630 0.00 0.00 0.00 3.27
2246 2442 8.472007 TCTTATTTGTTGGATGTAACTTGGTT 57.528 30.769 0.00 0.00 0.00 3.67
2247 2443 8.472007 TTCTTATTTGTTGGATGTAACTTGGT 57.528 30.769 0.00 0.00 0.00 3.67
2248 2444 9.757227 TTTTCTTATTTGTTGGATGTAACTTGG 57.243 29.630 0.00 0.00 0.00 3.61
2255 2451 9.480053 CTTGATGTTTTCTTATTTGTTGGATGT 57.520 29.630 0.00 0.00 0.00 3.06
2256 2452 8.437742 GCTTGATGTTTTCTTATTTGTTGGATG 58.562 33.333 0.00 0.00 0.00 3.51
2257 2453 8.149647 TGCTTGATGTTTTCTTATTTGTTGGAT 58.850 29.630 0.00 0.00 0.00 3.41
2259 2455 7.712264 TGCTTGATGTTTTCTTATTTGTTGG 57.288 32.000 0.00 0.00 0.00 3.77
2260 2456 8.980610 TGATGCTTGATGTTTTCTTATTTGTTG 58.019 29.630 0.00 0.00 0.00 3.33
2261 2457 9.545105 TTGATGCTTGATGTTTTCTTATTTGTT 57.455 25.926 0.00 0.00 0.00 2.83
2262 2458 9.545105 TTTGATGCTTGATGTTTTCTTATTTGT 57.455 25.926 0.00 0.00 0.00 2.83
2267 2463 9.357652 GCTTATTTGATGCTTGATGTTTTCTTA 57.642 29.630 0.00 0.00 0.00 2.10
2271 2467 7.380536 TCAGCTTATTTGATGCTTGATGTTTT 58.619 30.769 0.00 0.00 36.44 2.43
2274 2470 6.519679 TTCAGCTTATTTGATGCTTGATGT 57.480 33.333 0.00 0.00 36.44 3.06
2275 2471 7.329962 TGTTTTCAGCTTATTTGATGCTTGATG 59.670 33.333 0.00 0.00 36.44 3.07
2276 2472 7.380536 TGTTTTCAGCTTATTTGATGCTTGAT 58.619 30.769 0.00 0.00 36.44 2.57
2277 2473 6.747125 TGTTTTCAGCTTATTTGATGCTTGA 58.253 32.000 0.00 0.00 36.44 3.02
2278 2474 7.410800 TTGTTTTCAGCTTATTTGATGCTTG 57.589 32.000 0.00 0.00 36.44 4.01
2279 2475 8.337532 GTTTTGTTTTCAGCTTATTTGATGCTT 58.662 29.630 0.00 0.00 36.44 3.91
2280 2476 7.041848 GGTTTTGTTTTCAGCTTATTTGATGCT 60.042 33.333 0.00 0.00 39.07 3.79
2281 2477 7.071414 GGTTTTGTTTTCAGCTTATTTGATGC 58.929 34.615 0.00 0.00 0.00 3.91
2282 2478 7.282916 CGGTTTTGTTTTCAGCTTATTTGATG 58.717 34.615 0.00 0.00 0.00 3.07
2283 2479 6.073819 GCGGTTTTGTTTTCAGCTTATTTGAT 60.074 34.615 0.00 0.00 0.00 2.57
2284 2480 5.233263 GCGGTTTTGTTTTCAGCTTATTTGA 59.767 36.000 0.00 0.00 0.00 2.69
2285 2481 5.431309 GCGGTTTTGTTTTCAGCTTATTTG 58.569 37.500 0.00 0.00 0.00 2.32
2286 2482 4.509970 GGCGGTTTTGTTTTCAGCTTATTT 59.490 37.500 0.00 0.00 0.00 1.40
2287 2483 4.055360 GGCGGTTTTGTTTTCAGCTTATT 58.945 39.130 0.00 0.00 0.00 1.40
2288 2484 3.320826 AGGCGGTTTTGTTTTCAGCTTAT 59.679 39.130 0.00 0.00 0.00 1.73
2289 2485 2.691011 AGGCGGTTTTGTTTTCAGCTTA 59.309 40.909 0.00 0.00 0.00 3.09
2290 2486 1.480545 AGGCGGTTTTGTTTTCAGCTT 59.519 42.857 0.00 0.00 0.00 3.74
2291 2487 1.111277 AGGCGGTTTTGTTTTCAGCT 58.889 45.000 0.00 0.00 0.00 4.24
2292 2488 2.785713 TAGGCGGTTTTGTTTTCAGC 57.214 45.000 0.00 0.00 0.00 4.26
2293 2489 4.475944 CTCATAGGCGGTTTTGTTTTCAG 58.524 43.478 0.00 0.00 0.00 3.02
2294 2490 3.254657 CCTCATAGGCGGTTTTGTTTTCA 59.745 43.478 0.00 0.00 0.00 2.69
2295 2491 3.366985 CCCTCATAGGCGGTTTTGTTTTC 60.367 47.826 0.00 0.00 32.73 2.29
2296 2492 2.560981 CCCTCATAGGCGGTTTTGTTTT 59.439 45.455 0.00 0.00 32.73 2.43
2297 2493 2.167662 CCCTCATAGGCGGTTTTGTTT 58.832 47.619 0.00 0.00 32.73 2.83
2298 2494 1.074889 ACCCTCATAGGCGGTTTTGTT 59.925 47.619 0.00 0.00 32.73 2.83
2299 2495 0.696501 ACCCTCATAGGCGGTTTTGT 59.303 50.000 0.00 0.00 32.73 2.83
2300 2496 1.094785 CACCCTCATAGGCGGTTTTG 58.905 55.000 0.00 0.00 32.73 2.44
2301 2497 0.696501 ACACCCTCATAGGCGGTTTT 59.303 50.000 0.00 0.00 32.73 2.43
2302 2498 1.485066 CTACACCCTCATAGGCGGTTT 59.515 52.381 0.00 0.00 32.73 3.27
2303 2499 1.120530 CTACACCCTCATAGGCGGTT 58.879 55.000 0.00 0.00 32.73 4.44
2304 2500 0.032416 ACTACACCCTCATAGGCGGT 60.032 55.000 0.00 0.00 32.73 5.68
2305 2501 1.120530 AACTACACCCTCATAGGCGG 58.879 55.000 0.00 0.00 32.73 6.13
2306 2502 2.691526 TGTAACTACACCCTCATAGGCG 59.308 50.000 0.00 0.00 32.73 5.52
2307 2503 4.748277 TTGTAACTACACCCTCATAGGC 57.252 45.455 0.00 0.00 35.64 3.93
2308 2504 6.469410 TGTTTTGTAACTACACCCTCATAGG 58.531 40.000 0.00 0.00 35.64 2.57
2309 2505 9.314321 CTATGTTTTGTAACTACACCCTCATAG 57.686 37.037 0.00 0.00 35.64 2.23
2310 2506 7.767198 GCTATGTTTTGTAACTACACCCTCATA 59.233 37.037 0.00 0.00 35.64 2.15
2311 2507 6.598064 GCTATGTTTTGTAACTACACCCTCAT 59.402 38.462 0.00 0.00 35.64 2.90
2312 2508 5.935789 GCTATGTTTTGTAACTACACCCTCA 59.064 40.000 0.00 0.00 35.64 3.86
2313 2509 6.171213 AGCTATGTTTTGTAACTACACCCTC 58.829 40.000 0.00 0.00 35.64 4.30
2314 2510 6.123045 AGCTATGTTTTGTAACTACACCCT 57.877 37.500 0.00 0.00 35.64 4.34
2315 2511 7.101700 ACTAGCTATGTTTTGTAACTACACCC 58.898 38.462 0.00 0.00 35.64 4.61
2316 2512 7.816031 TGACTAGCTATGTTTTGTAACTACACC 59.184 37.037 0.00 0.00 35.64 4.16
2317 2513 8.752766 TGACTAGCTATGTTTTGTAACTACAC 57.247 34.615 0.00 0.00 35.64 2.90
2318 2514 9.582431 GATGACTAGCTATGTTTTGTAACTACA 57.418 33.333 0.00 0.00 35.24 2.74
2319 2515 9.804758 AGATGACTAGCTATGTTTTGTAACTAC 57.195 33.333 0.00 0.00 35.24 2.73
2320 2516 9.803315 CAGATGACTAGCTATGTTTTGTAACTA 57.197 33.333 0.00 0.00 35.24 2.24
2321 2517 8.531982 TCAGATGACTAGCTATGTTTTGTAACT 58.468 33.333 0.00 0.00 35.24 2.24
2322 2518 8.703604 TCAGATGACTAGCTATGTTTTGTAAC 57.296 34.615 0.00 0.00 34.75 2.50
2323 2519 9.890629 AATCAGATGACTAGCTATGTTTTGTAA 57.109 29.630 0.00 0.00 0.00 2.41
2324 2520 9.317936 CAATCAGATGACTAGCTATGTTTTGTA 57.682 33.333 0.00 0.00 0.00 2.41
2325 2521 7.201679 GCAATCAGATGACTAGCTATGTTTTGT 60.202 37.037 0.00 0.00 0.00 2.83
2326 2522 7.130917 GCAATCAGATGACTAGCTATGTTTTG 58.869 38.462 0.00 0.00 0.00 2.44
2327 2523 6.261826 GGCAATCAGATGACTAGCTATGTTTT 59.738 38.462 0.00 0.00 0.00 2.43
2328 2524 5.762218 GGCAATCAGATGACTAGCTATGTTT 59.238 40.000 0.00 0.00 0.00 2.83
2329 2525 5.071519 AGGCAATCAGATGACTAGCTATGTT 59.928 40.000 0.00 0.00 36.73 2.71
2330 2526 4.592351 AGGCAATCAGATGACTAGCTATGT 59.408 41.667 0.00 0.00 36.73 2.29
2331 2527 4.930405 CAGGCAATCAGATGACTAGCTATG 59.070 45.833 0.00 0.00 36.18 2.23
2332 2528 4.837298 TCAGGCAATCAGATGACTAGCTAT 59.163 41.667 0.00 0.00 36.18 2.97
2333 2529 4.218312 TCAGGCAATCAGATGACTAGCTA 58.782 43.478 0.00 0.00 36.18 3.32
2334 2530 3.036819 TCAGGCAATCAGATGACTAGCT 58.963 45.455 0.00 0.00 36.18 3.32
2335 2531 3.465742 TCAGGCAATCAGATGACTAGC 57.534 47.619 0.00 0.00 36.18 3.42
2336 2532 8.747471 TCTATTATCAGGCAATCAGATGACTAG 58.253 37.037 0.00 0.00 36.18 2.57
2337 2533 8.655935 TCTATTATCAGGCAATCAGATGACTA 57.344 34.615 0.00 0.00 36.18 2.59
2338 2534 7.550597 TCTATTATCAGGCAATCAGATGACT 57.449 36.000 0.00 0.00 40.05 3.41
2339 2535 6.313411 GCTCTATTATCAGGCAATCAGATGAC 59.687 42.308 0.00 0.00 0.00 3.06
2340 2536 6.212993 AGCTCTATTATCAGGCAATCAGATGA 59.787 38.462 0.00 0.00 0.00 2.92
2341 2537 6.408035 AGCTCTATTATCAGGCAATCAGATG 58.592 40.000 0.00 0.00 0.00 2.90
2342 2538 6.623979 AGCTCTATTATCAGGCAATCAGAT 57.376 37.500 0.00 0.00 0.00 2.90
2343 2539 6.350864 GCTAGCTCTATTATCAGGCAATCAGA 60.351 42.308 7.70 0.00 0.00 3.27
2344 2540 5.811613 GCTAGCTCTATTATCAGGCAATCAG 59.188 44.000 7.70 0.00 0.00 2.90
2345 2541 5.246883 TGCTAGCTCTATTATCAGGCAATCA 59.753 40.000 17.23 0.00 0.00 2.57
2346 2542 5.580297 GTGCTAGCTCTATTATCAGGCAATC 59.420 44.000 17.23 0.00 0.00 2.67
2347 2543 5.486526 GTGCTAGCTCTATTATCAGGCAAT 58.513 41.667 17.23 0.00 0.00 3.56
2348 2544 4.262635 GGTGCTAGCTCTATTATCAGGCAA 60.263 45.833 17.23 0.00 0.00 4.52
2349 2545 3.259374 GGTGCTAGCTCTATTATCAGGCA 59.741 47.826 17.23 0.00 0.00 4.75
2350 2546 3.674682 CGGTGCTAGCTCTATTATCAGGC 60.675 52.174 17.23 0.00 0.00 4.85
2351 2547 3.674682 GCGGTGCTAGCTCTATTATCAGG 60.675 52.174 17.23 0.00 0.00 3.86
2352 2548 3.506810 GCGGTGCTAGCTCTATTATCAG 58.493 50.000 17.23 0.24 0.00 2.90
2353 2549 2.231478 GGCGGTGCTAGCTCTATTATCA 59.769 50.000 17.23 0.00 34.52 2.15
2354 2550 2.417515 GGGCGGTGCTAGCTCTATTATC 60.418 54.545 17.23 0.00 34.52 1.75
2355 2551 1.550976 GGGCGGTGCTAGCTCTATTAT 59.449 52.381 17.23 0.00 34.52 1.28
2356 2552 0.966920 GGGCGGTGCTAGCTCTATTA 59.033 55.000 17.23 0.00 34.52 0.98
2357 2553 1.048724 TGGGCGGTGCTAGCTCTATT 61.049 55.000 17.23 0.00 35.78 1.73
2358 2554 1.457643 TGGGCGGTGCTAGCTCTAT 60.458 57.895 17.23 0.00 35.78 1.98
2359 2555 2.043349 TGGGCGGTGCTAGCTCTA 60.043 61.111 17.23 0.00 35.78 2.43
2360 2556 3.775654 GTGGGCGGTGCTAGCTCT 61.776 66.667 17.23 0.00 35.78 4.09
2361 2557 4.840005 GGTGGGCGGTGCTAGCTC 62.840 72.222 17.23 12.62 35.22 4.09
2375 2571 4.752879 AATCGTGTCCGGCCGGTG 62.753 66.667 41.57 28.44 36.47 4.94
2376 2572 4.446413 GAATCGTGTCCGGCCGGT 62.446 66.667 41.57 22.96 36.47 5.28
2383 2579 2.511600 CCTGGCGGAATCGTGTCC 60.512 66.667 0.00 0.00 38.89 4.02
2384 2580 2.100631 CACCTGGCGGAATCGTGTC 61.101 63.158 0.00 0.00 38.89 3.67
2385 2581 2.047274 CACCTGGCGGAATCGTGT 60.047 61.111 0.00 0.00 38.89 4.49
2386 2582 1.671054 AACACCTGGCGGAATCGTG 60.671 57.895 0.00 0.00 38.89 4.35
2387 2583 1.671054 CAACACCTGGCGGAATCGT 60.671 57.895 0.00 0.00 38.89 3.73
2388 2584 2.398554 CCAACACCTGGCGGAATCG 61.399 63.158 0.00 0.00 38.76 3.34
2389 2585 2.046285 CCCAACACCTGGCGGAATC 61.046 63.158 0.00 0.00 44.90 2.52
2390 2586 2.035626 CCCAACACCTGGCGGAAT 59.964 61.111 0.00 0.00 44.90 3.01
2391 2587 3.172106 TCCCAACACCTGGCGGAA 61.172 61.111 0.00 0.00 44.90 4.30
2392 2588 3.948719 GTCCCAACACCTGGCGGA 61.949 66.667 0.00 0.00 44.90 5.54
2393 2589 3.567579 ATGTCCCAACACCTGGCGG 62.568 63.158 0.00 0.00 44.90 6.13
2394 2590 2.034066 ATGTCCCAACACCTGGCG 59.966 61.111 0.00 0.00 44.90 5.69
2395 2591 1.978617 CCATGTCCCAACACCTGGC 60.979 63.158 0.00 0.00 44.90 4.85
2396 2592 1.304381 CCCATGTCCCAACACCTGG 60.304 63.158 0.00 0.00 45.97 4.45
2397 2593 0.609131 GACCCATGTCCCAACACCTG 60.609 60.000 0.00 0.00 38.48 4.00
2398 2594 1.767692 GACCCATGTCCCAACACCT 59.232 57.895 0.00 0.00 38.48 4.00
2399 2595 4.415783 GACCCATGTCCCAACACC 57.584 61.111 0.00 0.00 38.48 4.16
2417 2613 0.618458 TGTGGAGAATTCTTCGGGGG 59.382 55.000 9.87 0.00 34.02 5.40
2418 2614 2.717639 ATGTGGAGAATTCTTCGGGG 57.282 50.000 9.87 0.00 34.02 5.73
2419 2615 4.034048 CGTAAATGTGGAGAATTCTTCGGG 59.966 45.833 9.87 0.00 34.02 5.14
2420 2616 4.868171 TCGTAAATGTGGAGAATTCTTCGG 59.132 41.667 9.87 0.00 34.02 4.30
2421 2617 6.589830 ATCGTAAATGTGGAGAATTCTTCG 57.410 37.500 9.87 4.53 34.02 3.79
2422 2618 9.314321 TCTAATCGTAAATGTGGAGAATTCTTC 57.686 33.333 9.87 8.30 0.00 2.87
2423 2619 9.099454 GTCTAATCGTAAATGTGGAGAATTCTT 57.901 33.333 9.87 0.00 0.00 2.52
2424 2620 8.478877 AGTCTAATCGTAAATGTGGAGAATTCT 58.521 33.333 7.95 7.95 0.00 2.40
2425 2621 8.649973 AGTCTAATCGTAAATGTGGAGAATTC 57.350 34.615 0.00 0.00 0.00 2.17
2426 2622 9.530633 GTAGTCTAATCGTAAATGTGGAGAATT 57.469 33.333 0.00 0.00 0.00 2.17
2427 2623 8.915036 AGTAGTCTAATCGTAAATGTGGAGAAT 58.085 33.333 0.00 0.00 0.00 2.40
2428 2624 8.188799 CAGTAGTCTAATCGTAAATGTGGAGAA 58.811 37.037 0.00 0.00 0.00 2.87
2429 2625 7.555195 TCAGTAGTCTAATCGTAAATGTGGAGA 59.445 37.037 0.00 0.00 0.00 3.71
2430 2626 7.704271 TCAGTAGTCTAATCGTAAATGTGGAG 58.296 38.462 0.00 0.00 0.00 3.86
2431 2627 7.634671 TCAGTAGTCTAATCGTAAATGTGGA 57.365 36.000 0.00 0.00 0.00 4.02
2432 2628 8.135529 TGATCAGTAGTCTAATCGTAAATGTGG 58.864 37.037 0.00 0.00 0.00 4.17
2433 2629 9.175060 CTGATCAGTAGTCTAATCGTAAATGTG 57.825 37.037 14.95 0.00 0.00 3.21
2434 2630 9.121658 TCTGATCAGTAGTCTAATCGTAAATGT 57.878 33.333 21.92 0.00 0.00 2.71
2435 2631 9.388346 GTCTGATCAGTAGTCTAATCGTAAATG 57.612 37.037 21.92 0.00 0.00 2.32
2436 2632 9.344772 AGTCTGATCAGTAGTCTAATCGTAAAT 57.655 33.333 21.92 0.00 0.00 1.40
2437 2633 8.734218 AGTCTGATCAGTAGTCTAATCGTAAA 57.266 34.615 21.92 0.00 0.00 2.01
2438 2634 9.478768 CTAGTCTGATCAGTAGTCTAATCGTAA 57.521 37.037 21.92 0.00 0.00 3.18
2439 2635 8.640651 ACTAGTCTGATCAGTAGTCTAATCGTA 58.359 37.037 21.92 0.00 0.00 3.43
2440 2636 7.502696 ACTAGTCTGATCAGTAGTCTAATCGT 58.497 38.462 21.92 11.38 0.00 3.73
2441 2637 7.117236 GGACTAGTCTGATCAGTAGTCTAATCG 59.883 44.444 31.98 18.24 40.77 3.34
2442 2638 7.934665 TGGACTAGTCTGATCAGTAGTCTAATC 59.065 40.741 31.98 23.11 40.77 1.75
2443 2639 7.717875 GTGGACTAGTCTGATCAGTAGTCTAAT 59.282 40.741 31.98 18.80 40.77 1.73
2444 2640 7.049133 GTGGACTAGTCTGATCAGTAGTCTAA 58.951 42.308 31.98 24.22 40.77 2.10
2445 2641 6.384595 AGTGGACTAGTCTGATCAGTAGTCTA 59.615 42.308 31.98 28.22 40.77 2.59
2446 2642 5.190925 AGTGGACTAGTCTGATCAGTAGTCT 59.809 44.000 31.98 23.26 40.77 3.24
2447 2643 5.295787 CAGTGGACTAGTCTGATCAGTAGTC 59.704 48.000 28.91 28.91 40.40 2.59
2448 2644 5.045505 TCAGTGGACTAGTCTGATCAGTAGT 60.046 44.000 21.92 21.03 34.00 2.73
2449 2645 5.295787 GTCAGTGGACTAGTCTGATCAGTAG 59.704 48.000 21.92 18.23 40.99 2.57
2450 2646 5.186942 GTCAGTGGACTAGTCTGATCAGTA 58.813 45.833 21.92 7.67 40.99 2.74
2451 2647 4.013728 GTCAGTGGACTAGTCTGATCAGT 58.986 47.826 21.92 11.38 40.99 3.41
2452 2648 3.064682 CGTCAGTGGACTAGTCTGATCAG 59.935 52.174 21.88 17.07 42.05 2.90
2453 2649 3.010420 CGTCAGTGGACTAGTCTGATCA 58.990 50.000 21.88 8.98 42.05 2.92
2454 2650 3.011119 ACGTCAGTGGACTAGTCTGATC 58.989 50.000 21.88 6.39 42.05 2.92
2455 2651 3.074675 ACGTCAGTGGACTAGTCTGAT 57.925 47.619 21.88 5.72 42.05 2.90
2456 2652 2.563261 ACGTCAGTGGACTAGTCTGA 57.437 50.000 21.88 14.90 42.05 3.27
2457 2653 2.093941 CGTACGTCAGTGGACTAGTCTG 59.906 54.545 21.88 12.84 42.05 3.51
2458 2654 2.028658 TCGTACGTCAGTGGACTAGTCT 60.029 50.000 21.88 0.00 42.05 3.24
2459 2655 2.341257 TCGTACGTCAGTGGACTAGTC 58.659 52.381 14.87 14.87 42.05 2.59
2460 2656 2.462456 TCGTACGTCAGTGGACTAGT 57.538 50.000 16.05 0.00 42.05 2.57
2461 2657 3.487042 CCAATCGTACGTCAGTGGACTAG 60.487 52.174 15.94 0.00 42.05 2.57
2462 2658 2.421073 CCAATCGTACGTCAGTGGACTA 59.579 50.000 15.94 0.00 42.05 2.59
2463 2659 1.201647 CCAATCGTACGTCAGTGGACT 59.798 52.381 15.94 0.00 42.05 3.85
2464 2660 1.625616 CCAATCGTACGTCAGTGGAC 58.374 55.000 15.94 0.00 40.77 4.02
2465 2661 0.528924 CCCAATCGTACGTCAGTGGA 59.471 55.000 20.93 0.00 0.00 4.02
2466 2662 0.528924 TCCCAATCGTACGTCAGTGG 59.471 55.000 16.05 15.14 0.00 4.00
2467 2663 2.579207 ATCCCAATCGTACGTCAGTG 57.421 50.000 16.05 6.29 0.00 3.66
2468 2664 2.494471 TCAATCCCAATCGTACGTCAGT 59.506 45.455 16.05 0.00 0.00 3.41
2469 2665 3.159353 TCAATCCCAATCGTACGTCAG 57.841 47.619 16.05 5.93 0.00 3.51
2470 2666 3.383505 AGATCAATCCCAATCGTACGTCA 59.616 43.478 16.05 0.00 0.00 4.35
2471 2667 3.736252 CAGATCAATCCCAATCGTACGTC 59.264 47.826 16.05 0.43 0.00 4.34
2472 2668 3.383505 TCAGATCAATCCCAATCGTACGT 59.616 43.478 16.05 0.00 0.00 3.57
2473 2669 3.977427 TCAGATCAATCCCAATCGTACG 58.023 45.455 9.53 9.53 0.00 3.67
2474 2670 4.747108 CACTCAGATCAATCCCAATCGTAC 59.253 45.833 0.00 0.00 0.00 3.67
2475 2671 4.405680 ACACTCAGATCAATCCCAATCGTA 59.594 41.667 0.00 0.00 0.00 3.43
2476 2672 3.198635 ACACTCAGATCAATCCCAATCGT 59.801 43.478 0.00 0.00 0.00 3.73
2477 2673 3.801698 ACACTCAGATCAATCCCAATCG 58.198 45.455 0.00 0.00 0.00 3.34
2478 2674 4.133078 GGACACTCAGATCAATCCCAATC 58.867 47.826 0.00 0.00 0.00 2.67
2479 2675 3.432749 CGGACACTCAGATCAATCCCAAT 60.433 47.826 0.00 0.00 0.00 3.16
2480 2676 2.093500 CGGACACTCAGATCAATCCCAA 60.093 50.000 0.00 0.00 0.00 4.12
2481 2677 1.482182 CGGACACTCAGATCAATCCCA 59.518 52.381 0.00 0.00 0.00 4.37
2482 2678 1.757118 TCGGACACTCAGATCAATCCC 59.243 52.381 0.00 0.00 0.00 3.85
2483 2679 3.320541 AGATCGGACACTCAGATCAATCC 59.679 47.826 12.86 0.00 46.10 3.01
2484 2680 4.582701 AGATCGGACACTCAGATCAATC 57.417 45.455 12.86 0.00 46.10 2.67
2485 2681 6.662865 ATTAGATCGGACACTCAGATCAAT 57.337 37.500 12.86 8.58 46.10 2.57
2486 2682 6.207614 CCTATTAGATCGGACACTCAGATCAA 59.792 42.308 12.86 7.15 46.10 2.57
2487 2683 5.707764 CCTATTAGATCGGACACTCAGATCA 59.292 44.000 12.86 0.00 46.10 2.92
2488 2684 5.392595 GCCTATTAGATCGGACACTCAGATC 60.393 48.000 4.70 4.70 44.73 2.75
2489 2685 4.461081 GCCTATTAGATCGGACACTCAGAT 59.539 45.833 0.00 0.00 34.06 2.90
2490 2686 3.821600 GCCTATTAGATCGGACACTCAGA 59.178 47.826 0.00 0.00 0.00 3.27
2491 2687 3.823873 AGCCTATTAGATCGGACACTCAG 59.176 47.826 0.00 0.00 0.00 3.35
2492 2688 3.833732 AGCCTATTAGATCGGACACTCA 58.166 45.455 0.00 0.00 0.00 3.41
2493 2689 4.142556 GCTAGCCTATTAGATCGGACACTC 60.143 50.000 2.29 0.00 0.00 3.51
2494 2690 3.759618 GCTAGCCTATTAGATCGGACACT 59.240 47.826 2.29 0.00 0.00 3.55
2495 2691 3.759618 AGCTAGCCTATTAGATCGGACAC 59.240 47.826 12.13 0.00 0.00 3.67
2496 2692 3.759086 CAGCTAGCCTATTAGATCGGACA 59.241 47.826 12.13 0.00 0.00 4.02
2497 2693 3.129638 CCAGCTAGCCTATTAGATCGGAC 59.870 52.174 12.13 0.00 0.00 4.79
2498 2694 3.010250 TCCAGCTAGCCTATTAGATCGGA 59.990 47.826 12.13 0.00 0.00 4.55
2499 2695 3.129638 GTCCAGCTAGCCTATTAGATCGG 59.870 52.174 12.13 0.00 0.00 4.18
2500 2696 3.181505 CGTCCAGCTAGCCTATTAGATCG 60.182 52.174 12.13 1.01 0.00 3.69
2501 2697 3.759618 ACGTCCAGCTAGCCTATTAGATC 59.240 47.826 12.13 0.00 0.00 2.75
2502 2698 3.508012 CACGTCCAGCTAGCCTATTAGAT 59.492 47.826 12.13 0.00 0.00 1.98
2503 2699 2.885266 CACGTCCAGCTAGCCTATTAGA 59.115 50.000 12.13 0.00 0.00 2.10
2504 2700 2.029828 CCACGTCCAGCTAGCCTATTAG 60.030 54.545 12.13 1.52 0.00 1.73
2505 2701 1.961394 CCACGTCCAGCTAGCCTATTA 59.039 52.381 12.13 0.00 0.00 0.98
2506 2702 0.753262 CCACGTCCAGCTAGCCTATT 59.247 55.000 12.13 0.00 0.00 1.73
2507 2703 1.115930 CCCACGTCCAGCTAGCCTAT 61.116 60.000 12.13 0.00 0.00 2.57
2508 2704 1.756950 CCCACGTCCAGCTAGCCTA 60.757 63.158 12.13 0.00 0.00 3.93
2509 2705 3.077556 CCCACGTCCAGCTAGCCT 61.078 66.667 12.13 0.00 0.00 4.58
2510 2706 4.840005 GCCCACGTCCAGCTAGCC 62.840 72.222 12.13 0.00 0.00 3.93
2511 2707 4.840005 GGCCCACGTCCAGCTAGC 62.840 72.222 6.62 6.62 0.00 3.42
2512 2708 3.077556 AGGCCCACGTCCAGCTAG 61.078 66.667 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.