Multiple sequence alignment - TraesCS3B01G465300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G465300 | chr3B | 100.000 | 4622 | 0 | 0 | 1 | 4622 | 708364914 | 708360293 | 0.000000e+00 | 8536.0 |
1 | TraesCS3B01G465300 | chr3B | 84.688 | 738 | 90 | 19 | 3755 | 4487 | 2150417 | 2149698 | 0.000000e+00 | 715.0 |
2 | TraesCS3B01G465300 | chr3B | 95.349 | 43 | 1 | 1 | 3687 | 3729 | 421611845 | 421611804 | 2.980000e-07 | 67.6 |
3 | TraesCS3B01G465300 | chr3D | 90.861 | 2473 | 169 | 28 | 1 | 2454 | 536140779 | 536143213 | 0.000000e+00 | 3262.0 |
4 | TraesCS3B01G465300 | chr3D | 95.068 | 1176 | 47 | 6 | 2472 | 3646 | 536143200 | 536144365 | 0.000000e+00 | 1840.0 |
5 | TraesCS3B01G465300 | chr3D | 79.603 | 353 | 60 | 10 | 2741 | 3090 | 536244007 | 536244350 | 4.620000e-60 | 243.0 |
6 | TraesCS3B01G465300 | chr3D | 95.968 | 124 | 4 | 1 | 4500 | 4622 | 536147568 | 536147691 | 2.820000e-47 | 200.0 |
7 | TraesCS3B01G465300 | chr3D | 77.183 | 355 | 69 | 10 | 2739 | 3090 | 535650887 | 535650542 | 3.650000e-46 | 196.0 |
8 | TraesCS3B01G465300 | chr3D | 85.906 | 149 | 10 | 7 | 2280 | 2427 | 536165151 | 536165289 | 1.040000e-31 | 148.0 |
9 | TraesCS3B01G465300 | chr3A | 92.661 | 1935 | 114 | 14 | 1 | 1921 | 671680642 | 671678722 | 0.000000e+00 | 2761.0 |
10 | TraesCS3B01G465300 | chr3A | 93.929 | 1120 | 45 | 8 | 2570 | 3672 | 671678729 | 671677616 | 0.000000e+00 | 1670.0 |
11 | TraesCS3B01G465300 | chr3A | 77.968 | 758 | 137 | 22 | 2739 | 3487 | 671661127 | 671660391 | 9.120000e-122 | 448.0 |
12 | TraesCS3B01G465300 | chr3A | 88.341 | 223 | 18 | 3 | 2710 | 2925 | 671659871 | 671659650 | 1.280000e-65 | 261.0 |
13 | TraesCS3B01G465300 | chr3A | 79.213 | 356 | 60 | 12 | 2739 | 3090 | 671722974 | 671723319 | 7.730000e-58 | 235.0 |
14 | TraesCS3B01G465300 | chr3A | 86.802 | 197 | 12 | 5 | 2240 | 2427 | 671660214 | 671660023 | 1.690000e-49 | 207.0 |
15 | TraesCS3B01G465300 | chr3A | 76.554 | 354 | 73 | 8 | 2739 | 3090 | 670834572 | 670834227 | 7.900000e-43 | 185.0 |
16 | TraesCS3B01G465300 | chr3A | 96.703 | 91 | 3 | 0 | 4496 | 4586 | 671677614 | 671677524 | 8.010000e-33 | 152.0 |
17 | TraesCS3B01G465300 | chr3A | 91.837 | 49 | 3 | 1 | 3687 | 3735 | 117293177 | 117293224 | 2.980000e-07 | 67.6 |
18 | TraesCS3B01G465300 | chr1D | 82.880 | 882 | 128 | 9 | 2739 | 3613 | 419999923 | 419999058 | 0.000000e+00 | 771.0 |
19 | TraesCS3B01G465300 | chr1B | 83.804 | 815 | 121 | 8 | 2739 | 3546 | 566983427 | 566982617 | 0.000000e+00 | 763.0 |
20 | TraesCS3B01G465300 | chr1B | 96.078 | 51 | 1 | 1 | 3688 | 3738 | 422548751 | 422548800 | 1.070000e-11 | 82.4 |
21 | TraesCS3B01G465300 | chr1B | 97.500 | 40 | 1 | 0 | 3574 | 3613 | 566982610 | 566982571 | 8.300000e-08 | 69.4 |
22 | TraesCS3B01G465300 | chr7D | 85.734 | 729 | 94 | 8 | 3755 | 4479 | 617760122 | 617759400 | 0.000000e+00 | 761.0 |
23 | TraesCS3B01G465300 | chr7D | 80.543 | 221 | 39 | 4 | 1906 | 2124 | 600272109 | 600271891 | 2.860000e-37 | 167.0 |
24 | TraesCS3B01G465300 | chr7D | 90.541 | 74 | 6 | 1 | 3687 | 3760 | 139187093 | 139187021 | 3.810000e-16 | 97.1 |
25 | TraesCS3B01G465300 | chr5D | 85.637 | 738 | 90 | 16 | 3755 | 4484 | 27490786 | 27490057 | 0.000000e+00 | 761.0 |
26 | TraesCS3B01G465300 | chr5D | 81.019 | 216 | 40 | 1 | 1925 | 2140 | 26521904 | 26521690 | 2.210000e-38 | 171.0 |
27 | TraesCS3B01G465300 | chr5D | 79.747 | 237 | 44 | 3 | 1906 | 2140 | 26472466 | 26472232 | 7.950000e-38 | 169.0 |
28 | TraesCS3B01G465300 | chr5D | 80.093 | 216 | 42 | 1 | 1925 | 2140 | 26506263 | 26506049 | 4.790000e-35 | 159.0 |
29 | TraesCS3B01G465300 | chr6D | 85.464 | 743 | 91 | 13 | 3755 | 4488 | 143137448 | 143138182 | 0.000000e+00 | 758.0 |
30 | TraesCS3B01G465300 | chr2D | 85.210 | 737 | 88 | 16 | 3755 | 4483 | 650057987 | 650057264 | 0.000000e+00 | 737.0 |
31 | TraesCS3B01G465300 | chr2D | 94.915 | 59 | 2 | 1 | 3689 | 3747 | 450370259 | 450370202 | 1.770000e-14 | 91.6 |
32 | TraesCS3B01G465300 | chr6A | 84.005 | 744 | 97 | 17 | 3755 | 4487 | 122817194 | 122817926 | 0.000000e+00 | 695.0 |
33 | TraesCS3B01G465300 | chr7A | 85.440 | 625 | 83 | 7 | 3757 | 4377 | 696118219 | 696117599 | 1.080000e-180 | 643.0 |
34 | TraesCS3B01G465300 | chr7A | 83.881 | 639 | 87 | 11 | 3850 | 4487 | 207084801 | 207085424 | 3.080000e-166 | 595.0 |
35 | TraesCS3B01G465300 | chr1A | 84.337 | 664 | 89 | 12 | 3818 | 4479 | 60798697 | 60799347 | 1.810000e-178 | 636.0 |
36 | TraesCS3B01G465300 | chr1A | 84.188 | 234 | 37 | 0 | 1906 | 2139 | 405673160 | 405673393 | 1.290000e-55 | 228.0 |
37 | TraesCS3B01G465300 | chr1A | 81.526 | 249 | 41 | 4 | 1906 | 2150 | 172189161 | 172188914 | 2.820000e-47 | 200.0 |
38 | TraesCS3B01G465300 | chr1A | 93.333 | 45 | 2 | 1 | 3687 | 3731 | 60797057 | 60797100 | 1.070000e-06 | 65.8 |
39 | TraesCS3B01G465300 | chr4D | 80.508 | 236 | 42 | 4 | 1906 | 2140 | 198604490 | 198604258 | 1.320000e-40 | 178.0 |
40 | TraesCS3B01G465300 | chr4D | 90.196 | 51 | 5 | 0 | 1907 | 1957 | 71063233 | 71063283 | 2.980000e-07 | 67.6 |
41 | TraesCS3B01G465300 | chr2B | 82.418 | 91 | 14 | 2 | 3670 | 3760 | 104897402 | 104897490 | 1.380000e-10 | 78.7 |
42 | TraesCS3B01G465300 | chr4A | 95.652 | 46 | 1 | 1 | 3687 | 3732 | 210955621 | 210955665 | 6.410000e-09 | 73.1 |
43 | TraesCS3B01G465300 | chr4A | 91.837 | 49 | 3 | 1 | 3687 | 3735 | 944863 | 944910 | 2.980000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G465300 | chr3B | 708360293 | 708364914 | 4621 | True | 8536.000000 | 8536 | 100.000000 | 1 | 4622 | 1 | chr3B.!!$R3 | 4621 |
1 | TraesCS3B01G465300 | chr3B | 2149698 | 2150417 | 719 | True | 715.000000 | 715 | 84.688000 | 3755 | 4487 | 1 | chr3B.!!$R1 | 732 |
2 | TraesCS3B01G465300 | chr3D | 536140779 | 536147691 | 6912 | False | 1767.333333 | 3262 | 93.965667 | 1 | 4622 | 3 | chr3D.!!$F3 | 4621 |
3 | TraesCS3B01G465300 | chr3A | 671677524 | 671680642 | 3118 | True | 1527.666667 | 2761 | 94.431000 | 1 | 4586 | 3 | chr3A.!!$R3 | 4585 |
4 | TraesCS3B01G465300 | chr3A | 671659650 | 671661127 | 1477 | True | 305.333333 | 448 | 84.370333 | 2240 | 3487 | 3 | chr3A.!!$R2 | 1247 |
5 | TraesCS3B01G465300 | chr1D | 419999058 | 419999923 | 865 | True | 771.000000 | 771 | 82.880000 | 2739 | 3613 | 1 | chr1D.!!$R1 | 874 |
6 | TraesCS3B01G465300 | chr1B | 566982571 | 566983427 | 856 | True | 416.200000 | 763 | 90.652000 | 2739 | 3613 | 2 | chr1B.!!$R1 | 874 |
7 | TraesCS3B01G465300 | chr7D | 617759400 | 617760122 | 722 | True | 761.000000 | 761 | 85.734000 | 3755 | 4479 | 1 | chr7D.!!$R3 | 724 |
8 | TraesCS3B01G465300 | chr5D | 27490057 | 27490786 | 729 | True | 761.000000 | 761 | 85.637000 | 3755 | 4484 | 1 | chr5D.!!$R4 | 729 |
9 | TraesCS3B01G465300 | chr6D | 143137448 | 143138182 | 734 | False | 758.000000 | 758 | 85.464000 | 3755 | 4488 | 1 | chr6D.!!$F1 | 733 |
10 | TraesCS3B01G465300 | chr2D | 650057264 | 650057987 | 723 | True | 737.000000 | 737 | 85.210000 | 3755 | 4483 | 1 | chr2D.!!$R2 | 728 |
11 | TraesCS3B01G465300 | chr6A | 122817194 | 122817926 | 732 | False | 695.000000 | 695 | 84.005000 | 3755 | 4487 | 1 | chr6A.!!$F1 | 732 |
12 | TraesCS3B01G465300 | chr7A | 696117599 | 696118219 | 620 | True | 643.000000 | 643 | 85.440000 | 3757 | 4377 | 1 | chr7A.!!$R1 | 620 |
13 | TraesCS3B01G465300 | chr7A | 207084801 | 207085424 | 623 | False | 595.000000 | 595 | 83.881000 | 3850 | 4487 | 1 | chr7A.!!$F1 | 637 |
14 | TraesCS3B01G465300 | chr1A | 60797057 | 60799347 | 2290 | False | 350.900000 | 636 | 88.835000 | 3687 | 4479 | 2 | chr1A.!!$F2 | 792 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
772 | 782 | 0.172578 | CACGACATAAGTCTCCGCCA | 59.827 | 55.0 | 0.00 | 0.00 | 42.73 | 5.69 | F |
1423 | 1437 | 0.258774 | TTTGGAATAGGAGGCTGGCC | 59.741 | 55.0 | 3.00 | 3.00 | 0.00 | 5.36 | F |
2247 | 2276 | 1.467875 | GTAGCACGATCAGTACTGCG | 58.532 | 55.0 | 18.45 | 18.09 | 0.00 | 5.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2698 | 2736 | 0.109412 | GCATCCTGCAAGCAGTTCAC | 60.109 | 55.000 | 19.60 | 4.32 | 44.26 | 3.18 | R |
2991 | 3036 | 1.807165 | GCTCATGAAGTCGCTCGCA | 60.807 | 57.895 | 0.00 | 0.00 | 0.00 | 5.10 | R |
4030 | 8779 | 0.389817 | TCCATTTGTCTGACCGAGCG | 60.390 | 55.000 | 5.17 | 0.00 | 0.00 | 5.03 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
188 | 190 | 8.347771 | CCGATTGATATGATGACATTGTCTTTT | 58.652 | 33.333 | 17.26 | 3.17 | 37.87 | 2.27 |
302 | 304 | 6.783708 | ACCACCACAAAACTTCAAAATCTA | 57.216 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
369 | 374 | 2.749621 | CAAGGTAGAAGGTGAATGGTGC | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
419 | 424 | 1.761198 | GTTTAGCATCGAGGGTAGGGT | 59.239 | 52.381 | 9.10 | 0.00 | 0.00 | 4.34 |
429 | 434 | 0.195096 | AGGGTAGGGTTTGGTGGAGA | 59.805 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
438 | 443 | 1.065410 | TTTGGTGGAGAGGGGAGCAA | 61.065 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
485 | 490 | 9.100197 | ACCCATCTTCTTGTTTTATTTTGGTAT | 57.900 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
489 | 494 | 8.129496 | TCTTCTTGTTTTATTTTGGTATCCCC | 57.871 | 34.615 | 0.00 | 0.00 | 0.00 | 4.81 |
490 | 495 | 7.953493 | TCTTCTTGTTTTATTTTGGTATCCCCT | 59.047 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
688 | 697 | 8.374327 | AGACCGCCTTATAAATACAATGTAAC | 57.626 | 34.615 | 0.00 | 0.00 | 0.00 | 2.50 |
690 | 699 | 6.487668 | ACCGCCTTATAAATACAATGTAACCC | 59.512 | 38.462 | 0.00 | 0.00 | 0.00 | 4.11 |
694 | 703 | 8.287503 | GCCTTATAAATACAATGTAACCCGAAG | 58.712 | 37.037 | 0.00 | 0.00 | 0.00 | 3.79 |
706 | 715 | 1.698506 | ACCCGAAGTGGATTTTTGCA | 58.301 | 45.000 | 0.00 | 0.00 | 42.00 | 4.08 |
772 | 782 | 0.172578 | CACGACATAAGTCTCCGCCA | 59.827 | 55.000 | 0.00 | 0.00 | 42.73 | 5.69 |
833 | 843 | 7.027874 | TCAAAACCCATAGAAACCTACAGAT | 57.972 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
834 | 844 | 6.884295 | TCAAAACCCATAGAAACCTACAGATG | 59.116 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
848 | 858 | 4.835056 | CCTACAGATGTCCATATCCTCACA | 59.165 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
854 | 864 | 4.743057 | TGTCCATATCCTCACACTGAAG | 57.257 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
1033 | 1043 | 3.640029 | TCTCTCCAACACGGTAAAGTTCT | 59.360 | 43.478 | 0.00 | 0.00 | 35.57 | 3.01 |
1100 | 1110 | 6.067263 | TCATCGGTTTGTAAAGTTTTGGAG | 57.933 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
1125 | 1135 | 4.636206 | GCAACCACTATAACCCTCTTTCTG | 59.364 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
1297 | 1307 | 6.466812 | TCCATATGATGTGTAGCATTTCGAT | 58.533 | 36.000 | 3.65 | 0.00 | 38.06 | 3.59 |
1299 | 1309 | 6.369615 | CCATATGATGTGTAGCATTTCGATGA | 59.630 | 38.462 | 3.65 | 0.00 | 38.06 | 2.92 |
1309 | 1319 | 4.852138 | AGCATTTCGATGATTCCATTTCG | 58.148 | 39.130 | 0.00 | 0.00 | 32.09 | 3.46 |
1345 | 1355 | 9.016438 | CACATATGACATGATTGAATCCCATAA | 57.984 | 33.333 | 10.38 | 0.00 | 0.00 | 1.90 |
1359 | 1373 | 7.829725 | TGAATCCCATAATCACTTTGTTTCAG | 58.170 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
1403 | 1417 | 7.873719 | TCCCTTGTATTACATGGTGTATTTG | 57.126 | 36.000 | 21.12 | 9.12 | 40.63 | 2.32 |
1423 | 1437 | 0.258774 | TTTGGAATAGGAGGCTGGCC | 59.741 | 55.000 | 3.00 | 3.00 | 0.00 | 5.36 |
1544 | 1562 | 9.000486 | ACTTTAAGTAGGCTTGTTCATTTAGTC | 58.000 | 33.333 | 0.00 | 0.00 | 36.22 | 2.59 |
1566 | 1584 | 2.103263 | CCCTATTGGTGTAGTGAGCTCC | 59.897 | 54.545 | 12.15 | 2.40 | 0.00 | 4.70 |
1765 | 1786 | 3.448660 | GGATTGGAAGGGGTCTCAAAATG | 59.551 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
1788 | 1809 | 6.422333 | TGATTAGGATGTGCAAATGGAGTTA | 58.578 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1808 | 1829 | 7.172703 | GGAGTTATCGGGGTAGAAACAATAATG | 59.827 | 40.741 | 0.00 | 0.00 | 0.00 | 1.90 |
1854 | 1875 | 9.988350 | AACAATATTAACTGACGATCAATTCAC | 57.012 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
1863 | 1884 | 5.109210 | TGACGATCAATTCACGATTTAGCT | 58.891 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
1870 | 1891 | 7.899178 | TCAATTCACGATTTAGCTAGAAACA | 57.101 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1934 | 1958 | 7.369551 | TCCAAATATATAGGGCCTAATACGG | 57.630 | 40.000 | 18.91 | 15.50 | 0.00 | 4.02 |
1937 | 1961 | 8.050930 | CCAAATATATAGGGCCTAATACGGTTT | 58.949 | 37.037 | 18.91 | 10.98 | 0.00 | 3.27 |
1966 | 1990 | 4.879545 | GTCACCTCTGACCACAAGTTAAAA | 59.120 | 41.667 | 0.00 | 0.00 | 41.06 | 1.52 |
1995 | 2019 | 5.199723 | ACATATGGCATGGATGTTACACAA | 58.800 | 37.500 | 10.98 | 0.00 | 29.46 | 3.33 |
1998 | 2022 | 2.230992 | TGGCATGGATGTTACACAAAGC | 59.769 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2004 | 2028 | 6.459985 | GCATGGATGTTACACAAAGCATATGA | 60.460 | 38.462 | 6.97 | 0.00 | 0.00 | 2.15 |
2098 | 2122 | 3.940209 | TCAATGGTCAAATGCAACCTC | 57.060 | 42.857 | 6.83 | 0.00 | 36.47 | 3.85 |
2139 | 2163 | 8.191110 | ACCCTATATATTTGGATGAAGGGAGTA | 58.809 | 37.037 | 16.59 | 0.00 | 44.39 | 2.59 |
2174 | 2198 | 4.456358 | GCATGAATTTGCGCGTGA | 57.544 | 50.000 | 8.43 | 0.00 | 32.06 | 4.35 |
2201 | 2225 | 7.979444 | ACGAAAGGAAGATTGACATTTTAGA | 57.021 | 32.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2202 | 2226 | 8.391075 | ACGAAAGGAAGATTGACATTTTAGAA | 57.609 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
2203 | 2227 | 8.507249 | ACGAAAGGAAGATTGACATTTTAGAAG | 58.493 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
2204 | 2228 | 7.483059 | CGAAAGGAAGATTGACATTTTAGAAGC | 59.517 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
2205 | 2229 | 8.414629 | AAAGGAAGATTGACATTTTAGAAGCT | 57.585 | 30.769 | 0.00 | 0.00 | 0.00 | 3.74 |
2206 | 2230 | 7.388460 | AGGAAGATTGACATTTTAGAAGCTG | 57.612 | 36.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2209 | 2233 | 4.400567 | AGATTGACATTTTAGAAGCTGGCC | 59.599 | 41.667 | 0.00 | 0.00 | 0.00 | 5.36 |
2238 | 2267 | 3.143279 | CGAAACAAAACGTAGCACGATC | 58.857 | 45.455 | 14.18 | 0.00 | 46.05 | 3.69 |
2243 | 2272 | 3.671928 | ACAAAACGTAGCACGATCAGTAC | 59.328 | 43.478 | 14.18 | 0.00 | 46.05 | 2.73 |
2247 | 2276 | 1.467875 | GTAGCACGATCAGTACTGCG | 58.532 | 55.000 | 18.45 | 18.09 | 0.00 | 5.18 |
2267 | 2296 | 2.166459 | CGAATCAGCCCTGTAACTCTCA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2307 | 2336 | 7.926674 | AATGGATCAAAATTTTGTGGGATTC | 57.073 | 32.000 | 25.98 | 14.05 | 39.18 | 2.52 |
2319 | 2348 | 6.392625 | TTTGTGGGATTCGACTAGATCTAG | 57.607 | 41.667 | 25.26 | 25.26 | 39.04 | 2.43 |
2343 | 2372 | 8.767478 | AGAAATTTAATGAGGATGTGCAAAAG | 57.233 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
2375 | 2404 | 5.475719 | TCGACGGAATCAGAAACAATAACT | 58.524 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2389 | 2418 | 8.091449 | AGAAACAATAACTGAGTAGAGTGAAGG | 58.909 | 37.037 | 2.47 | 0.00 | 0.00 | 3.46 |
2404 | 2433 | 6.176183 | AGAGTGAAGGAGGAATACAACATTG | 58.824 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2417 | 2446 | 7.148407 | GGAATACAACATTGACTAGTGACCAAG | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 3.61 |
2452 | 2481 | 9.992442 | TGGGGTTTAATTAATTACCAAGATACA | 57.008 | 29.630 | 17.89 | 7.27 | 0.00 | 2.29 |
2457 | 2486 | 8.999905 | TTAATTAATTACCAAGATACACCCCC | 57.000 | 34.615 | 7.43 | 0.00 | 0.00 | 5.40 |
2508 | 2537 | 8.581263 | CACATAAAATCTTTTCAATGCTTCGAG | 58.419 | 33.333 | 0.00 | 0.00 | 0.00 | 4.04 |
2520 | 2549 | 7.615582 | TCAATGCTTCGAGAATATTTGAGTT | 57.384 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2593 | 2622 | 8.732746 | AAAGTATATCCAGCGTTAAATGTTCT | 57.267 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
2624 | 2653 | 8.087136 | TCATAGTATCGTCCTACTGTAGTACTG | 58.913 | 40.741 | 18.14 | 5.69 | 33.96 | 2.74 |
2630 | 2660 | 5.185828 | TCGTCCTACTGTAGTACTGTACTCA | 59.814 | 44.000 | 22.79 | 17.95 | 40.14 | 3.41 |
2663 | 2693 | 9.859152 | AAAAATTGGAGAGATATTCTTAGAGGG | 57.141 | 33.333 | 0.00 | 0.00 | 35.87 | 4.30 |
2707 | 2748 | 2.201732 | CACGTTAGTGTGTGAACTGCT | 58.798 | 47.619 | 0.00 | 0.00 | 43.15 | 4.24 |
2708 | 2749 | 2.607635 | CACGTTAGTGTGTGAACTGCTT | 59.392 | 45.455 | 0.00 | 0.00 | 43.15 | 3.91 |
2769 | 2810 | 4.802051 | CCCATGGTGGCCACGGAG | 62.802 | 72.222 | 29.08 | 19.59 | 39.54 | 4.63 |
2991 | 3036 | 0.534412 | CGTCCATGAACCTGAGCTCT | 59.466 | 55.000 | 16.19 | 0.00 | 0.00 | 4.09 |
3093 | 3138 | 1.270907 | ACAGCTTCCTCTTCACGGAT | 58.729 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3240 | 3288 | 1.082561 | CGTGAAGTCGACGAACCGA | 60.083 | 57.895 | 10.46 | 0.00 | 39.21 | 4.69 |
3381 | 3432 | 1.658114 | CGTCCAGTTCCTCGACACA | 59.342 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
3672 | 6901 | 3.192466 | ACGTCGCACTTTAAGTTGACTT | 58.808 | 40.909 | 18.75 | 11.04 | 39.85 | 3.01 |
3673 | 6902 | 3.000925 | ACGTCGCACTTTAAGTTGACTTG | 59.999 | 43.478 | 18.75 | 10.76 | 37.40 | 3.16 |
3674 | 6903 | 3.244345 | CGTCGCACTTTAAGTTGACTTGA | 59.756 | 43.478 | 18.75 | 0.00 | 37.40 | 3.02 |
3675 | 6904 | 4.606232 | CGTCGCACTTTAAGTTGACTTGAG | 60.606 | 45.833 | 18.75 | 7.00 | 37.40 | 3.02 |
3676 | 6905 | 4.506654 | GTCGCACTTTAAGTTGACTTGAGA | 59.493 | 41.667 | 15.72 | 1.54 | 37.40 | 3.27 |
3677 | 6906 | 4.506654 | TCGCACTTTAAGTTGACTTGAGAC | 59.493 | 41.667 | 6.64 | 3.15 | 37.40 | 3.36 |
3678 | 6907 | 4.508124 | CGCACTTTAAGTTGACTTGAGACT | 59.492 | 41.667 | 6.64 | 0.00 | 37.40 | 3.24 |
3679 | 6908 | 5.690409 | CGCACTTTAAGTTGACTTGAGACTA | 59.310 | 40.000 | 6.64 | 0.00 | 37.40 | 2.59 |
3680 | 6909 | 6.200286 | CGCACTTTAAGTTGACTTGAGACTAA | 59.800 | 38.462 | 6.64 | 0.00 | 37.40 | 2.24 |
3681 | 6910 | 7.095607 | CGCACTTTAAGTTGACTTGAGACTAAT | 60.096 | 37.037 | 6.64 | 0.00 | 37.40 | 1.73 |
3682 | 6911 | 8.012241 | GCACTTTAAGTTGACTTGAGACTAATG | 58.988 | 37.037 | 6.64 | 1.36 | 37.40 | 1.90 |
3683 | 6912 | 9.046296 | CACTTTAAGTTGACTTGAGACTAATGT | 57.954 | 33.333 | 6.64 | 0.00 | 37.40 | 2.71 |
3686 | 6915 | 9.706691 | TTTAAGTTGACTTGAGACTAATGTAGG | 57.293 | 33.333 | 6.64 | 0.00 | 37.40 | 3.18 |
3687 | 6916 | 5.725362 | AGTTGACTTGAGACTAATGTAGGC | 58.275 | 41.667 | 0.00 | 0.00 | 0.00 | 3.93 |
3688 | 6917 | 7.178628 | TAAGTTGACTTGAGACTAATGTAGGCT | 59.821 | 37.037 | 6.64 | 0.00 | 41.17 | 4.58 |
3689 | 6918 | 6.014156 | AGTTGACTTGAGACTAATGTAGGCTT | 60.014 | 38.462 | 0.00 | 0.00 | 46.40 | 4.35 |
3690 | 6919 | 5.967088 | TGACTTGAGACTAATGTAGGCTTC | 58.033 | 41.667 | 0.00 | 0.00 | 46.40 | 3.86 |
3691 | 6920 | 5.000012 | ACTTGAGACTAATGTAGGCTTCG | 58.000 | 43.478 | 0.00 | 0.00 | 46.40 | 3.79 |
3692 | 6921 | 3.438297 | TGAGACTAATGTAGGCTTCGC | 57.562 | 47.619 | 0.00 | 0.00 | 46.40 | 4.70 |
3726 | 6955 | 6.472887 | TCTTCACTCGTGGGATTAATTCTTT | 58.527 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3780 | 7230 | 6.798315 | TTTTTCGTTTGATATTGTACCGGA | 57.202 | 33.333 | 9.46 | 0.00 | 0.00 | 5.14 |
3786 | 7236 | 6.819649 | TCGTTTGATATTGTACCGGATTCTTT | 59.180 | 34.615 | 9.46 | 0.00 | 0.00 | 2.52 |
3794 | 7244 | 7.703058 | ATTGTACCGGATTCTTTTTGAAGAT | 57.297 | 32.000 | 9.46 | 0.00 | 38.18 | 2.40 |
3872 | 7325 | 2.223443 | TCTGCCTTGGTGCCAGCTA | 61.223 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
3889 | 7342 | 2.038557 | AGCTAGTGGTGGTCGTTTGAAT | 59.961 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3894 | 7347 | 3.576982 | AGTGGTGGTCGTTTGAATCTCTA | 59.423 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
3903 | 7356 | 6.349445 | GGTCGTTTGAATCTCTAGAGAAGTCA | 60.349 | 42.308 | 25.77 | 25.33 | 41.36 | 3.41 |
3915 | 7368 | 9.616156 | TCTCTAGAGAAGTCATATTCTACGTTT | 57.384 | 33.333 | 20.31 | 0.00 | 39.63 | 3.60 |
3916 | 7369 | 9.658475 | CTCTAGAGAAGTCATATTCTACGTTTG | 57.342 | 37.037 | 15.05 | 0.00 | 39.63 | 2.93 |
3966 | 8712 | 2.281345 | GGATCGGCCCATGAGCTG | 60.281 | 66.667 | 0.71 | 0.71 | 40.71 | 4.24 |
4030 | 8779 | 2.234913 | TTTTCTCCGCTCGCCCTACC | 62.235 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4355 | 9133 | 4.782019 | AAGCGCTCATGAATTAAAACCA | 57.218 | 36.364 | 12.06 | 0.00 | 0.00 | 3.67 |
4363 | 9142 | 8.424731 | CGCTCATGAATTAAAACCAGTAAAAAC | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
4421 | 9203 | 0.744414 | CCTTACATGCAGGTCCCACG | 60.744 | 60.000 | 7.56 | 0.00 | 0.00 | 4.94 |
4469 | 9513 | 3.009916 | AGAGTGCTTCAAATCATGGGAGT | 59.990 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 2.689553 | CACACTTTTGGGCCAGTTTT | 57.310 | 45.000 | 6.23 | 0.00 | 0.00 | 2.43 |
188 | 190 | 5.183140 | GCCTGTAGGATTTGCTTCTTACAAA | 59.817 | 40.000 | 1.17 | 0.00 | 37.62 | 2.83 |
192 | 194 | 4.568072 | TGCCTGTAGGATTTGCTTCTTA | 57.432 | 40.909 | 1.17 | 0.00 | 37.39 | 2.10 |
302 | 304 | 4.910195 | TGTCTGGTTCAGCAATAATCACT | 58.090 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
314 | 316 | 2.484770 | CGGTCCTTTCTTGTCTGGTTCA | 60.485 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
380 | 385 | 9.899661 | TGCTAAACAATTGTAGATAATAGTGGT | 57.100 | 29.630 | 12.39 | 0.00 | 0.00 | 4.16 |
402 | 407 | 1.760613 | CAAACCCTACCCTCGATGCTA | 59.239 | 52.381 | 0.00 | 0.00 | 0.00 | 3.49 |
419 | 424 | 1.065410 | TTGCTCCCCTCTCCACCAAA | 61.065 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
429 | 434 | 0.982852 | TCCGATGTCATTGCTCCCCT | 60.983 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
438 | 443 | 1.417890 | GAGGGGTGATTCCGATGTCAT | 59.582 | 52.381 | 0.00 | 0.00 | 37.00 | 3.06 |
485 | 490 | 1.064825 | GGTTTTGAGAGGTGAGGGGA | 58.935 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
489 | 494 | 3.519510 | TCCTATGGGTTTTGAGAGGTGAG | 59.480 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
490 | 495 | 3.526899 | TCCTATGGGTTTTGAGAGGTGA | 58.473 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
569 | 576 | 7.972277 | GCTGACTAATTGGAAATATATGCATGG | 59.028 | 37.037 | 10.16 | 0.00 | 0.00 | 3.66 |
688 | 697 | 2.810439 | TTGCAAAAATCCACTTCGGG | 57.190 | 45.000 | 0.00 | 0.00 | 34.36 | 5.14 |
690 | 699 | 3.058450 | TGCATTGCAAAAATCCACTTCG | 58.942 | 40.909 | 9.33 | 0.00 | 34.76 | 3.79 |
772 | 782 | 6.980397 | GTCTTCAATCCACAATTTCACAAAGT | 59.020 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
833 | 843 | 4.081476 | CACTTCAGTGTGAGGATATGGACA | 60.081 | 45.833 | 0.00 | 0.00 | 40.96 | 4.02 |
834 | 844 | 4.437239 | CACTTCAGTGTGAGGATATGGAC | 58.563 | 47.826 | 0.00 | 0.00 | 40.96 | 4.02 |
848 | 858 | 6.360370 | TTCTAAAGATGTAGGCACTTCAGT | 57.640 | 37.500 | 0.00 | 0.00 | 39.55 | 3.41 |
854 | 864 | 9.780186 | ATTATTACCTTCTAAAGATGTAGGCAC | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
972 | 982 | 5.304686 | TGGATTTATAGGGTGTCCATGAC | 57.695 | 43.478 | 0.00 | 0.00 | 34.23 | 3.06 |
1005 | 1015 | 5.779529 | TTACCGTGTTGGAGAGATATACC | 57.220 | 43.478 | 0.00 | 0.00 | 42.00 | 2.73 |
1009 | 1019 | 5.479375 | AGAACTTTACCGTGTTGGAGAGATA | 59.521 | 40.000 | 0.00 | 0.00 | 42.00 | 1.98 |
1083 | 1093 | 5.062934 | GGTTGCACTCCAAAACTTTACAAAC | 59.937 | 40.000 | 0.00 | 0.00 | 34.68 | 2.93 |
1100 | 1110 | 3.629142 | AGAGGGTTATAGTGGTTGCAC | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
1125 | 1135 | 2.828128 | GCTGGCGAGCACCAATAGC | 61.828 | 63.158 | 16.60 | 0.00 | 45.46 | 2.97 |
1183 | 1193 | 0.820871 | TTTTGTTTTGGTGCTCGCCT | 59.179 | 45.000 | 0.86 | 0.00 | 0.00 | 5.52 |
1192 | 1202 | 9.244799 | GTTAGAGTTTCCACTATTTTGTTTTGG | 57.755 | 33.333 | 0.00 | 0.00 | 31.22 | 3.28 |
1297 | 1307 | 6.207614 | TGTGTTTTCATACCGAAATGGAATCA | 59.792 | 34.615 | 0.00 | 0.00 | 43.12 | 2.57 |
1299 | 1309 | 6.582677 | TGTGTTTTCATACCGAAATGGAAT | 57.417 | 33.333 | 0.00 | 0.00 | 43.12 | 3.01 |
1309 | 1319 | 9.454585 | CAATCATGTCATATGTGTTTTCATACC | 57.545 | 33.333 | 1.90 | 0.00 | 33.87 | 2.73 |
1345 | 1355 | 5.354234 | ACGAGAAACACTGAAACAAAGTGAT | 59.646 | 36.000 | 10.35 | 0.00 | 46.55 | 3.06 |
1359 | 1373 | 5.044558 | GGGATCTATCTCAACGAGAAACAC | 58.955 | 45.833 | 0.00 | 0.00 | 42.27 | 3.32 |
1403 | 1417 | 1.393603 | GCCAGCCTCCTATTCCAAAC | 58.606 | 55.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1423 | 1437 | 2.602878 | TGACTAGCCGCGAGTAAAAAG | 58.397 | 47.619 | 8.23 | 0.00 | 0.00 | 2.27 |
1544 | 1562 | 2.103263 | GAGCTCACTACACCAATAGGGG | 59.897 | 54.545 | 9.40 | 0.00 | 46.87 | 4.79 |
1566 | 1584 | 1.675552 | AACACCTGGAAAGGACGTTG | 58.324 | 50.000 | 0.00 | 0.00 | 30.93 | 4.10 |
1668 | 1689 | 9.692325 | ATCTGCCAAGAAGTTCTTATATCTTTT | 57.308 | 29.630 | 17.62 | 0.00 | 33.78 | 2.27 |
1675 | 1696 | 5.105595 | GCCAAATCTGCCAAGAAGTTCTTAT | 60.106 | 40.000 | 17.62 | 5.02 | 33.78 | 1.73 |
1682 | 1703 | 3.604875 | AATGCCAAATCTGCCAAGAAG | 57.395 | 42.857 | 0.00 | 0.00 | 35.59 | 2.85 |
1737 | 1758 | 4.265124 | TGAGACCCCTTCCAATCCTAGTAA | 60.265 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
1748 | 1769 | 4.889995 | CCTAATCATTTTGAGACCCCTTCC | 59.110 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
1751 | 1772 | 5.194537 | ACATCCTAATCATTTTGAGACCCCT | 59.805 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1765 | 1786 | 5.841957 | AACTCCATTTGCACATCCTAATC | 57.158 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
1788 | 1809 | 5.132144 | ACTCCATTATTGTTTCTACCCCGAT | 59.868 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1833 | 1854 | 8.642908 | AATCGTGAATTGATCGTCAGTTAATA | 57.357 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
1854 | 1875 | 6.673316 | GCTTTCCTGTGTTTCTAGCTAAATCG | 60.673 | 42.308 | 0.00 | 0.00 | 0.00 | 3.34 |
1966 | 1990 | 9.752228 | TGTAACATCCATGCCATATGTTATTAT | 57.248 | 29.630 | 13.43 | 0.00 | 43.89 | 1.28 |
2004 | 2028 | 9.774742 | GAAACTTCTTTCGCATATGAATTTAGT | 57.225 | 29.630 | 6.97 | 0.00 | 0.00 | 2.24 |
2157 | 2181 | 2.103898 | TATCACGCGCAAATTCATGC | 57.896 | 45.000 | 5.73 | 0.00 | 42.94 | 4.06 |
2160 | 2184 | 1.727335 | TCGTTATCACGCGCAAATTCA | 59.273 | 42.857 | 5.73 | 0.00 | 46.70 | 2.57 |
2220 | 2249 | 3.128349 | ACTGATCGTGCTACGTTTTGTT | 58.872 | 40.909 | 0.00 | 0.00 | 43.14 | 2.83 |
2227 | 2256 | 1.467875 | GCAGTACTGATCGTGCTACG | 58.532 | 55.000 | 27.08 | 2.79 | 44.19 | 3.51 |
2238 | 2267 | 0.176680 | AGGGCTGATTCGCAGTACTG | 59.823 | 55.000 | 18.93 | 18.93 | 46.62 | 2.74 |
2247 | 2276 | 3.895232 | TGAGAGTTACAGGGCTGATTC | 57.105 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
2286 | 2315 | 5.576774 | GTCGAATCCCACAAAATTTTGATCC | 59.423 | 40.000 | 32.20 | 14.62 | 40.55 | 3.36 |
2319 | 2348 | 7.818930 | TCCTTTTGCACATCCTCATTAAATTTC | 59.181 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2343 | 2372 | 0.806492 | GATTCCGTCGAGGCAAGTCC | 60.806 | 60.000 | 0.00 | 0.00 | 40.77 | 3.85 |
2354 | 2383 | 6.369065 | ACTCAGTTATTGTTTCTGATTCCGTC | 59.631 | 38.462 | 0.00 | 0.00 | 37.54 | 4.79 |
2375 | 2404 | 5.827756 | TGTATTCCTCCTTCACTCTACTCA | 58.172 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2389 | 2418 | 6.535508 | GGTCACTAGTCAATGTTGTATTCCTC | 59.464 | 42.308 | 0.00 | 0.00 | 0.00 | 3.71 |
2404 | 2433 | 8.095169 | CCCCAATTATATACTTGGTCACTAGTC | 58.905 | 40.741 | 23.22 | 0.00 | 40.28 | 2.59 |
2496 | 2525 | 7.615582 | AACTCAAATATTCTCGAAGCATTGA | 57.384 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2497 | 2526 | 9.773328 | TTAAACTCAAATATTCTCGAAGCATTG | 57.227 | 29.630 | 0.00 | 0.00 | 0.00 | 2.82 |
2528 | 2557 | 9.034800 | ACACACATTATTGGAGAAATATTTGGT | 57.965 | 29.630 | 5.17 | 0.00 | 30.74 | 3.67 |
2609 | 2638 | 7.013823 | ACTTGAGTACAGTACTACAGTAGGA | 57.986 | 40.000 | 13.51 | 0.00 | 39.59 | 2.94 |
2624 | 2653 | 9.052759 | TCTCTCCAATTTTTGTTACTTGAGTAC | 57.947 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2698 | 2736 | 0.109412 | GCATCCTGCAAGCAGTTCAC | 60.109 | 55.000 | 19.60 | 4.32 | 44.26 | 3.18 |
2946 | 2987 | 2.050350 | CGTCGGGAGGAGGTAGCAA | 61.050 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
2991 | 3036 | 1.807165 | GCTCATGAAGTCGCTCGCA | 60.807 | 57.895 | 0.00 | 0.00 | 0.00 | 5.10 |
3240 | 3288 | 2.434884 | CGCAGCATCTCCACCGTT | 60.435 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
3692 | 6921 | 3.952628 | GAGTGAAGAACGGCCCGGG | 62.953 | 68.421 | 19.09 | 19.09 | 0.00 | 5.73 |
3696 | 6925 | 2.027625 | CCACGAGTGAAGAACGGCC | 61.028 | 63.158 | 4.59 | 0.00 | 0.00 | 6.13 |
3731 | 6960 | 7.380536 | ACAACCGACCGCAATAATATATTAGA | 58.619 | 34.615 | 10.79 | 0.00 | 0.00 | 2.10 |
3732 | 6961 | 7.591006 | ACAACCGACCGCAATAATATATTAG | 57.409 | 36.000 | 10.79 | 0.25 | 0.00 | 1.73 |
3733 | 6962 | 7.966246 | AACAACCGACCGCAATAATATATTA | 57.034 | 32.000 | 7.62 | 7.62 | 0.00 | 0.98 |
3734 | 6963 | 6.870971 | AACAACCGACCGCAATAATATATT | 57.129 | 33.333 | 2.97 | 2.97 | 0.00 | 1.28 |
3735 | 6964 | 6.870971 | AAACAACCGACCGCAATAATATAT | 57.129 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
3737 | 6966 | 5.570234 | AAAACAACCGACCGCAATAATAT | 57.430 | 34.783 | 0.00 | 0.00 | 0.00 | 1.28 |
3739 | 6968 | 3.926821 | AAAACAACCGACCGCAATAAT | 57.073 | 38.095 | 0.00 | 0.00 | 0.00 | 1.28 |
3827 | 7279 | 4.980573 | TGTAAAGACACCACAATAAGGCT | 58.019 | 39.130 | 0.00 | 0.00 | 0.00 | 4.58 |
3830 | 7282 | 7.173218 | AGACACATGTAAAGACACCACAATAAG | 59.827 | 37.037 | 0.00 | 0.00 | 38.76 | 1.73 |
3833 | 7286 | 5.239306 | CAGACACATGTAAAGACACCACAAT | 59.761 | 40.000 | 0.00 | 0.00 | 38.76 | 2.71 |
3872 | 7325 | 2.368875 | AGAGATTCAAACGACCACCACT | 59.631 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3889 | 7342 | 9.616156 | AAACGTAGAATATGACTTCTCTAGAGA | 57.384 | 33.333 | 18.76 | 18.76 | 36.82 | 3.10 |
3894 | 7347 | 9.877178 | ATTTCAAACGTAGAATATGACTTCTCT | 57.123 | 29.630 | 4.45 | 0.00 | 36.82 | 3.10 |
3909 | 7362 | 6.148948 | CAGCAATTCCAGAATTTCAAACGTA | 58.851 | 36.000 | 2.86 | 0.00 | 38.84 | 3.57 |
3915 | 7368 | 7.122501 | TGTTATAGCAGCAATTCCAGAATTTCA | 59.877 | 33.333 | 2.86 | 0.00 | 38.84 | 2.69 |
3916 | 7369 | 7.433425 | GTGTTATAGCAGCAATTCCAGAATTTC | 59.567 | 37.037 | 2.86 | 0.00 | 38.84 | 2.17 |
3921 | 7380 | 5.102953 | AGTGTTATAGCAGCAATTCCAGA | 57.897 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
3922 | 7381 | 4.877823 | TGAGTGTTATAGCAGCAATTCCAG | 59.122 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
4030 | 8779 | 0.389817 | TCCATTTGTCTGACCGAGCG | 60.390 | 55.000 | 5.17 | 0.00 | 0.00 | 5.03 |
4322 | 9100 | 7.754069 | TTCATGAGCGCTTATTAAAATTTGG | 57.246 | 32.000 | 13.26 | 0.00 | 0.00 | 3.28 |
4355 | 9133 | 8.042286 | TCCCCTTCTCTCTTTAAGTTTTTACT | 57.958 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4425 | 9207 | 0.534203 | TGTTTCGAGAGTTGTGGGGC | 60.534 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
4435 | 9217 | 1.040646 | AGCACTCTGGTGTTTCGAGA | 58.959 | 50.000 | 0.00 | 0.00 | 44.65 | 4.04 |
4451 | 9233 | 5.324409 | ACTAAACTCCCATGATTTGAAGCA | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
4493 | 9537 | 9.854668 | TGATAGCTAAGTTCAAGTCTATCTAGT | 57.145 | 33.333 | 0.00 | 0.00 | 34.59 | 2.57 |
4512 | 9556 | 7.898636 | AGCTAGAAGGATTAAGGTATGATAGCT | 59.101 | 37.037 | 0.00 | 0.00 | 37.00 | 3.32 |
4516 | 9560 | 8.497910 | TTGAGCTAGAAGGATTAAGGTATGAT | 57.502 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.