Multiple sequence alignment - TraesCS3B01G465200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G465200 chr3B 100.000 3110 0 0 1 3110 708312386 708309277 0.000000e+00 5744.0
1 TraesCS3B01G465200 chr3B 87.234 470 57 1 1619 2085 707128223 707127754 1.640000e-147 532.0
2 TraesCS3B01G465200 chr3B 88.515 357 38 3 1253 1607 707241818 707241463 2.220000e-116 429.0
3 TraesCS3B01G465200 chr3B 88.022 359 41 2 1250 1607 707128677 707128320 1.030000e-114 424.0
4 TraesCS3B01G465200 chr3B 80.309 518 102 0 1607 2124 708416229 708416746 2.910000e-105 392.0
5 TraesCS3B01G465200 chr3B 92.713 247 17 1 2524 2770 670548147 670547902 3.810000e-94 355.0
6 TraesCS3B01G465200 chr3A 92.626 1546 61 21 680 2199 671661689 671660171 0.000000e+00 2174.0
7 TraesCS3B01G465200 chr3A 86.567 469 60 1 1620 2085 670834126 670833658 5.950000e-142 514.0
8 TraesCS3B01G465200 chr3A 83.936 498 73 5 1619 2111 670860245 670859750 1.310000e-128 470.0
9 TraesCS3B01G465200 chr3A 88.022 359 41 2 1250 1607 670834582 670834225 1.030000e-114 424.0
10 TraesCS3B01G465200 chr3A 87.366 372 42 4 1237 1607 670860790 670860423 3.710000e-114 422.0
11 TraesCS3B01G465200 chr3A 87.222 360 42 3 1250 1607 670828728 670828371 1.040000e-109 407.0
12 TraesCS3B01G465200 chr3A 91.892 259 14 3 315 573 671662091 671661840 3.810000e-94 355.0
13 TraesCS3B01G465200 chr3A 81.050 438 51 21 2556 2967 230093416 230093847 1.390000e-83 320.0
14 TraesCS3B01G465200 chr3A 90.625 64 5 1 43 106 675527655 675527593 1.990000e-12 84.2
15 TraesCS3B01G465200 chr3A 91.489 47 2 2 4 49 452239160 452239115 2.590000e-06 63.9
16 TraesCS3B01G465200 chr3D 92.332 1565 56 18 639 2178 536163626 536165151 0.000000e+00 2167.0
17 TraesCS3B01G465200 chr3D 86.170 470 62 1 1619 2085 535650445 535649976 3.580000e-139 505.0
18 TraesCS3B01G465200 chr3D 88.579 359 39 2 1250 1607 535650897 535650540 4.760000e-118 435.0
19 TraesCS3B01G465200 chr3D 88.235 357 40 2 1250 1605 535668921 535668566 2.870000e-115 425.0
20 TraesCS3B01G465200 chr3D 79.003 662 95 28 2466 3095 483004155 483004804 2.230000e-111 412.0
21 TraesCS3B01G465200 chr3D 81.401 414 72 5 1618 2029 535644176 535643766 1.790000e-87 333.0
22 TraesCS3B01G465200 chr3D 76.879 519 108 6 1607 2124 536211497 536212004 1.830000e-72 283.0
23 TraesCS3B01G465200 chr3D 91.250 160 10 2 346 501 536149567 536149726 6.750000e-52 215.0
24 TraesCS3B01G465200 chr4A 85.048 943 88 18 2201 3109 13653800 13652877 0.000000e+00 911.0
25 TraesCS3B01G465200 chr6A 84.845 838 85 30 2201 3002 430868118 430868949 0.000000e+00 806.0
26 TraesCS3B01G465200 chr6A 97.222 36 1 0 1 36 245743566 245743601 9.310000e-06 62.1
27 TraesCS3B01G465200 chr1B 80.072 838 137 24 1237 2050 566983450 566982619 2.060000e-166 595.0
28 TraesCS3B01G465200 chr1B 85.976 164 17 4 161 320 643935138 643934977 1.480000e-38 171.0
29 TraesCS3B01G465200 chr1D 78.973 837 148 20 1237 2050 419999946 419999115 2.110000e-151 545.0
30 TraesCS3B01G465200 chr1D 88.750 320 33 2 2772 3089 410477732 410477414 3.760000e-104 388.0
31 TraesCS3B01G465200 chr1D 77.108 664 88 37 2466 3095 195998774 195999407 2.990000e-85 326.0
32 TraesCS3B01G465200 chr7B 81.832 677 51 21 2466 3095 167747870 167748521 1.290000e-138 503.0
33 TraesCS3B01G465200 chr7B 83.901 323 36 12 2780 3095 717895793 717895480 8.430000e-76 294.0
34 TraesCS3B01G465200 chr7B 87.981 208 25 0 2201 2408 717896040 717895833 2.400000e-61 246.0
35 TraesCS3B01G465200 chr2A 79.669 664 86 34 2466 3095 209151442 209150794 1.710000e-117 433.0
36 TraesCS3B01G465200 chr2A 88.961 154 11 4 164 311 737803850 737804003 5.300000e-43 185.0
37 TraesCS3B01G465200 chr5D 79.518 664 89 33 2466 3095 84682390 84683040 2.220000e-116 429.0
38 TraesCS3B01G465200 chr5D 79.592 490 61 17 2466 2925 449649129 449648649 6.470000e-82 315.0
39 TraesCS3B01G465200 chr5D 78.365 416 54 16 2480 2868 228486654 228487060 1.440000e-58 237.0
40 TraesCS3B01G465200 chr5D 87.662 154 16 2 161 311 427250960 427250807 3.190000e-40 176.0
41 TraesCS3B01G465200 chr5D 87.261 157 15 3 161 312 11886971 11886815 1.150000e-39 174.0
42 TraesCS3B01G465200 chr5D 83.133 166 27 1 2201 2366 294331679 294331515 1.930000e-32 150.0
43 TraesCS3B01G465200 chr6B 79.143 537 71 25 2588 3093 643569964 643569438 1.790000e-87 333.0
44 TraesCS3B01G465200 chr2D 85.397 315 30 10 2788 3095 99119263 99119568 2.330000e-81 313.0
45 TraesCS3B01G465200 chr2D 85.098 255 35 3 2201 2452 99118533 99118787 1.110000e-64 257.0
46 TraesCS3B01G465200 chr2D 82.578 287 36 7 2487 2770 99118943 99119218 1.110000e-59 241.0
47 TraesCS3B01G465200 chr2D 91.176 68 5 1 39 106 629095095 629095029 1.190000e-14 91.6
48 TraesCS3B01G465200 chr6D 91.083 157 9 3 161 312 460642153 460642309 1.130000e-49 207.0
49 TraesCS3B01G465200 chr2B 88.608 158 12 5 163 314 801186074 801186231 1.470000e-43 187.0
50 TraesCS3B01G465200 chr2B 95.238 42 1 1 4 45 159041562 159041522 7.200000e-07 65.8
51 TraesCS3B01G465200 chr7D 88.889 153 14 2 162 311 580566885 580566733 5.300000e-43 185.0
52 TraesCS3B01G465200 chr7D 87.821 156 14 2 161 311 70095681 70095836 8.860000e-41 178.0
53 TraesCS3B01G465200 chr5A 87.742 155 14 5 161 311 135165878 135166031 3.190000e-40 176.0
54 TraesCS3B01G465200 chr5A 93.750 48 1 2 1 47 140918664 140918710 1.550000e-08 71.3
55 TraesCS3B01G465200 chr5B 81.152 191 33 2 2201 2391 420576070 420575883 1.930000e-32 150.0
56 TraesCS3B01G465200 chr7A 85.047 107 16 0 2201 2307 234529062 234528956 3.280000e-20 110.0
57 TraesCS3B01G465200 chr7A 100.000 38 0 0 1 38 224532152 224532189 1.550000e-08 71.3
58 TraesCS3B01G465200 chr7A 95.349 43 0 2 4 45 722817177 722817136 2.000000e-07 67.6
59 TraesCS3B01G465200 chrUn 86.667 90 12 0 2201 2290 329811722 329811633 1.970000e-17 100.0
60 TraesCS3B01G465200 chrUn 86.667 90 12 0 2201 2290 329823071 329823160 1.970000e-17 100.0
61 TraesCS3B01G465200 chr1A 97.561 41 1 0 1 41 517464565 517464605 1.550000e-08 71.3
62 TraesCS3B01G465200 chr1A 87.719 57 1 5 4 58 96928964 96928912 9.310000e-06 62.1
63 TraesCS3B01G465200 chr1A 97.143 35 1 0 1 35 468321002 468321036 3.350000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G465200 chr3B 708309277 708312386 3109 True 5744.000000 5744 100.000000 1 3110 1 chr3B.!!$R3 3109
1 TraesCS3B01G465200 chr3B 707127754 707128677 923 True 478.000000 532 87.628000 1250 2085 2 chr3B.!!$R4 835
2 TraesCS3B01G465200 chr3B 708416229 708416746 517 False 392.000000 392 80.309000 1607 2124 1 chr3B.!!$F1 517
3 TraesCS3B01G465200 chr3A 671660171 671662091 1920 True 1264.500000 2174 92.259000 315 2199 2 chr3A.!!$R6 1884
4 TraesCS3B01G465200 chr3A 670833658 670834582 924 True 469.000000 514 87.294500 1250 2085 2 chr3A.!!$R4 835
5 TraesCS3B01G465200 chr3A 670859750 670860790 1040 True 446.000000 470 85.651000 1237 2111 2 chr3A.!!$R5 874
6 TraesCS3B01G465200 chr3D 536163626 536165151 1525 False 2167.000000 2167 92.332000 639 2178 1 chr3D.!!$F3 1539
7 TraesCS3B01G465200 chr3D 535649976 535650897 921 True 470.000000 505 87.374500 1250 2085 2 chr3D.!!$R3 835
8 TraesCS3B01G465200 chr3D 483004155 483004804 649 False 412.000000 412 79.003000 2466 3095 1 chr3D.!!$F1 629
9 TraesCS3B01G465200 chr3D 536211497 536212004 507 False 283.000000 283 76.879000 1607 2124 1 chr3D.!!$F4 517
10 TraesCS3B01G465200 chr4A 13652877 13653800 923 True 911.000000 911 85.048000 2201 3109 1 chr4A.!!$R1 908
11 TraesCS3B01G465200 chr6A 430868118 430868949 831 False 806.000000 806 84.845000 2201 3002 1 chr6A.!!$F2 801
12 TraesCS3B01G465200 chr1B 566982619 566983450 831 True 595.000000 595 80.072000 1237 2050 1 chr1B.!!$R1 813
13 TraesCS3B01G465200 chr1D 419999115 419999946 831 True 545.000000 545 78.973000 1237 2050 1 chr1D.!!$R2 813
14 TraesCS3B01G465200 chr1D 195998774 195999407 633 False 326.000000 326 77.108000 2466 3095 1 chr1D.!!$F1 629
15 TraesCS3B01G465200 chr7B 167747870 167748521 651 False 503.000000 503 81.832000 2466 3095 1 chr7B.!!$F1 629
16 TraesCS3B01G465200 chr7B 717895480 717896040 560 True 270.000000 294 85.941000 2201 3095 2 chr7B.!!$R1 894
17 TraesCS3B01G465200 chr2A 209150794 209151442 648 True 433.000000 433 79.669000 2466 3095 1 chr2A.!!$R1 629
18 TraesCS3B01G465200 chr5D 84682390 84683040 650 False 429.000000 429 79.518000 2466 3095 1 chr5D.!!$F1 629
19 TraesCS3B01G465200 chr6B 643569438 643569964 526 True 333.000000 333 79.143000 2588 3093 1 chr6B.!!$R1 505
20 TraesCS3B01G465200 chr2D 99118533 99119568 1035 False 270.333333 313 84.357667 2201 3095 3 chr2D.!!$F1 894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.036306 CTCCACCTTTTAGTGCCGGT 59.964 55.0 1.9 0.0 36.38 5.28 F
1003 1108 0.178992 CTTGGTGGTGGTGGACATGT 60.179 55.0 0.0 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 1294 0.176449 TCATGGGTCATCTGCTCACG 59.824 55.0 0.00 0.00 0.00 4.35 R
2199 2518 0.467290 ACCACCGGTGCAATTGACTT 60.467 50.0 29.75 0.82 32.98 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.521995 CATGTGGGAGCTATAGCCG 57.478 57.895 21.17 0.00 43.38 5.52
19 20 0.671781 CATGTGGGAGCTATAGCCGC 60.672 60.000 21.17 19.02 43.38 6.53
20 21 1.121407 ATGTGGGAGCTATAGCCGCA 61.121 55.000 21.17 21.10 43.38 5.69
21 22 1.121407 TGTGGGAGCTATAGCCGCAT 61.121 55.000 24.89 9.43 43.38 4.73
22 23 0.390472 GTGGGAGCTATAGCCGCATC 60.390 60.000 24.89 15.99 43.38 3.91
23 24 1.153745 GGGAGCTATAGCCGCATCG 60.154 63.158 21.17 0.00 43.38 3.84
24 25 1.595993 GGGAGCTATAGCCGCATCGA 61.596 60.000 21.17 0.00 43.38 3.59
25 26 0.179150 GGAGCTATAGCCGCATCGAG 60.179 60.000 21.17 0.00 43.38 4.04
26 27 0.179150 GAGCTATAGCCGCATCGAGG 60.179 60.000 21.17 0.00 43.38 4.63
27 28 1.153745 GCTATAGCCGCATCGAGGG 60.154 63.158 14.13 0.00 34.31 4.30
35 36 3.706140 GCATCGAGGGCGTTACAG 58.294 61.111 0.00 0.00 38.98 2.74
36 37 2.526120 GCATCGAGGGCGTTACAGC 61.526 63.158 0.00 0.00 38.98 4.40
37 38 2.104331 ATCGAGGGCGTTACAGCG 59.896 61.111 0.00 0.00 38.98 5.18
38 39 2.707849 ATCGAGGGCGTTACAGCGT 61.708 57.895 0.00 0.00 38.98 5.07
39 40 1.378882 ATCGAGGGCGTTACAGCGTA 61.379 55.000 0.00 0.00 38.98 4.42
40 41 1.870901 CGAGGGCGTTACAGCGTAC 60.871 63.158 0.00 0.00 38.18 3.67
41 42 1.870901 GAGGGCGTTACAGCGTACG 60.871 63.158 11.84 11.84 40.55 3.67
42 43 2.179018 GGGCGTTACAGCGTACGA 59.821 61.111 21.65 0.00 40.03 3.43
43 44 1.870901 GGGCGTTACAGCGTACGAG 60.871 63.158 21.65 13.07 40.03 4.18
44 45 2.502965 GGCGTTACAGCGTACGAGC 61.503 63.158 21.65 11.08 40.03 5.03
45 46 1.798725 GCGTTACAGCGTACGAGCA 60.799 57.895 21.65 0.00 40.03 4.26
46 47 1.339235 GCGTTACAGCGTACGAGCAA 61.339 55.000 21.65 4.53 40.03 3.91
47 48 1.265568 CGTTACAGCGTACGAGCAAT 58.734 50.000 21.65 1.17 40.03 3.56
48 49 1.652124 CGTTACAGCGTACGAGCAATT 59.348 47.619 21.65 0.00 40.03 2.32
49 50 2.284288 CGTTACAGCGTACGAGCAATTC 60.284 50.000 21.65 0.00 40.03 2.17
50 51 2.640346 TACAGCGTACGAGCAATTCA 57.360 45.000 21.65 0.00 40.15 2.57
51 52 1.790755 ACAGCGTACGAGCAATTCAA 58.209 45.000 21.65 0.00 40.15 2.69
52 53 1.726791 ACAGCGTACGAGCAATTCAAG 59.273 47.619 21.65 0.00 40.15 3.02
53 54 1.992667 CAGCGTACGAGCAATTCAAGA 59.007 47.619 21.65 0.00 40.15 3.02
54 55 2.028523 CAGCGTACGAGCAATTCAAGAG 59.971 50.000 21.65 0.00 40.15 2.85
55 56 2.094700 AGCGTACGAGCAATTCAAGAGA 60.095 45.455 21.65 0.00 40.15 3.10
56 57 2.666508 GCGTACGAGCAATTCAAGAGAA 59.333 45.455 21.65 0.00 36.17 2.87
57 58 3.122948 GCGTACGAGCAATTCAAGAGAAA 59.877 43.478 21.65 0.00 35.69 2.52
58 59 4.377022 GCGTACGAGCAATTCAAGAGAAAA 60.377 41.667 21.65 0.00 35.69 2.29
59 60 5.675970 CGTACGAGCAATTCAAGAGAAAAA 58.324 37.500 10.44 0.00 37.29 1.94
60 61 6.307155 CGTACGAGCAATTCAAGAGAAAAAT 58.693 36.000 10.44 0.00 37.29 1.82
61 62 7.453034 CGTACGAGCAATTCAAGAGAAAAATA 58.547 34.615 10.44 0.00 37.29 1.40
62 63 7.632515 CGTACGAGCAATTCAAGAGAAAAATAG 59.367 37.037 10.44 0.00 37.29 1.73
63 64 6.317857 ACGAGCAATTCAAGAGAAAAATAGC 58.682 36.000 0.00 0.00 37.29 2.97
64 65 5.450385 CGAGCAATTCAAGAGAAAAATAGCG 59.550 40.000 0.00 0.00 37.29 4.26
65 66 5.644644 AGCAATTCAAGAGAAAAATAGCGG 58.355 37.500 0.00 0.00 37.29 5.52
66 67 4.800471 GCAATTCAAGAGAAAAATAGCGGG 59.200 41.667 0.00 0.00 37.29 6.13
67 68 5.393027 GCAATTCAAGAGAAAAATAGCGGGA 60.393 40.000 0.00 0.00 37.29 5.14
68 69 6.681368 GCAATTCAAGAGAAAAATAGCGGGAT 60.681 38.462 0.00 0.00 37.29 3.85
69 70 7.260603 CAATTCAAGAGAAAAATAGCGGGATT 58.739 34.615 0.00 0.00 37.29 3.01
70 71 6.834168 TTCAAGAGAAAAATAGCGGGATTT 57.166 33.333 0.00 0.00 0.00 2.17
71 72 6.834168 TCAAGAGAAAAATAGCGGGATTTT 57.166 33.333 2.37 2.37 40.03 1.82
72 73 7.227049 TCAAGAGAAAAATAGCGGGATTTTT 57.773 32.000 15.27 15.27 46.62 1.94
73 74 7.090173 TCAAGAGAAAAATAGCGGGATTTTTG 58.910 34.615 18.41 9.19 44.91 2.44
74 75 5.410924 AGAGAAAAATAGCGGGATTTTTGC 58.589 37.500 18.41 12.54 44.91 3.68
75 76 5.185828 AGAGAAAAATAGCGGGATTTTTGCT 59.814 36.000 18.41 15.27 44.91 3.91
76 77 5.170748 AGAAAAATAGCGGGATTTTTGCTG 58.829 37.500 18.41 0.00 44.91 4.41
77 78 3.525268 AAATAGCGGGATTTTTGCTGG 57.475 42.857 0.00 0.00 39.73 4.85
78 79 2.435372 ATAGCGGGATTTTTGCTGGA 57.565 45.000 0.00 0.00 39.73 3.86
79 80 1.459450 TAGCGGGATTTTTGCTGGAC 58.541 50.000 0.00 0.00 39.73 4.02
80 81 1.215382 GCGGGATTTTTGCTGGACC 59.785 57.895 0.00 0.00 0.00 4.46
81 82 1.531739 GCGGGATTTTTGCTGGACCA 61.532 55.000 0.00 0.00 0.00 4.02
82 83 0.527565 CGGGATTTTTGCTGGACCAG 59.472 55.000 17.83 17.83 34.12 4.00
83 84 0.897621 GGGATTTTTGCTGGACCAGG 59.102 55.000 23.09 5.16 31.21 4.45
84 85 1.632589 GGATTTTTGCTGGACCAGGT 58.367 50.000 23.09 0.00 31.21 4.00
85 86 1.546029 GGATTTTTGCTGGACCAGGTC 59.454 52.381 23.09 11.70 31.21 3.85
86 87 2.238521 GATTTTTGCTGGACCAGGTCA 58.761 47.619 23.09 10.52 33.68 4.02
87 88 2.380064 TTTTTGCTGGACCAGGTCAT 57.620 45.000 23.09 0.00 33.68 3.06
88 89 3.517296 TTTTTGCTGGACCAGGTCATA 57.483 42.857 23.09 8.65 33.68 2.15
89 90 2.787473 TTTGCTGGACCAGGTCATAG 57.213 50.000 23.09 18.22 33.68 2.23
90 91 1.951209 TTGCTGGACCAGGTCATAGA 58.049 50.000 23.09 6.55 33.68 1.98
91 92 2.180946 TGCTGGACCAGGTCATAGAT 57.819 50.000 23.09 0.00 33.68 1.98
92 93 2.481441 TGCTGGACCAGGTCATAGATT 58.519 47.619 23.09 0.00 33.68 2.40
93 94 2.846206 TGCTGGACCAGGTCATAGATTT 59.154 45.455 23.09 0.00 33.68 2.17
94 95 3.118261 TGCTGGACCAGGTCATAGATTTC 60.118 47.826 23.09 6.69 33.68 2.17
95 96 3.118261 GCTGGACCAGGTCATAGATTTCA 60.118 47.826 23.09 6.35 33.68 2.69
96 97 4.626287 GCTGGACCAGGTCATAGATTTCAA 60.626 45.833 23.09 0.00 33.68 2.69
97 98 5.688807 CTGGACCAGGTCATAGATTTCAAT 58.311 41.667 21.75 0.00 33.68 2.57
98 99 5.439721 TGGACCAGGTCATAGATTTCAATG 58.560 41.667 21.75 0.00 33.68 2.82
99 100 4.823989 GGACCAGGTCATAGATTTCAATGG 59.176 45.833 21.75 0.00 33.68 3.16
100 101 5.397899 GGACCAGGTCATAGATTTCAATGGA 60.398 44.000 21.75 0.00 33.68 3.41
101 102 5.688807 ACCAGGTCATAGATTTCAATGGAG 58.311 41.667 0.00 0.00 0.00 3.86
102 103 5.429762 ACCAGGTCATAGATTTCAATGGAGA 59.570 40.000 0.00 0.00 0.00 3.71
103 104 6.069440 ACCAGGTCATAGATTTCAATGGAGAA 60.069 38.462 0.00 0.00 0.00 2.87
104 105 7.002879 CCAGGTCATAGATTTCAATGGAGAAT 58.997 38.462 0.00 0.00 0.00 2.40
105 106 8.159447 CCAGGTCATAGATTTCAATGGAGAATA 58.841 37.037 0.00 0.00 0.00 1.75
106 107 9.736414 CAGGTCATAGATTTCAATGGAGAATAT 57.264 33.333 0.00 0.00 0.00 1.28
107 108 9.956640 AGGTCATAGATTTCAATGGAGAATATC 57.043 33.333 0.00 0.00 0.00 1.63
108 109 8.877779 GGTCATAGATTTCAATGGAGAATATCG 58.122 37.037 0.00 0.00 0.00 2.92
109 110 9.429359 GTCATAGATTTCAATGGAGAATATCGT 57.571 33.333 0.00 0.00 0.00 3.73
114 115 9.046296 AGATTTCAATGGAGAATATCGTTACAC 57.954 33.333 0.00 0.00 0.00 2.90
115 116 7.548196 TTTCAATGGAGAATATCGTTACACC 57.452 36.000 0.00 0.00 0.00 4.16
116 117 6.479972 TCAATGGAGAATATCGTTACACCT 57.520 37.500 0.00 0.00 0.00 4.00
117 118 7.591421 TCAATGGAGAATATCGTTACACCTA 57.409 36.000 0.00 0.00 0.00 3.08
118 119 8.014070 TCAATGGAGAATATCGTTACACCTAA 57.986 34.615 0.00 0.00 0.00 2.69
119 120 8.647796 TCAATGGAGAATATCGTTACACCTAAT 58.352 33.333 0.00 0.00 0.00 1.73
120 121 8.712363 CAATGGAGAATATCGTTACACCTAATG 58.288 37.037 0.00 0.00 0.00 1.90
121 122 6.220930 TGGAGAATATCGTTACACCTAATGC 58.779 40.000 0.00 0.00 0.00 3.56
122 123 5.638234 GGAGAATATCGTTACACCTAATGCC 59.362 44.000 0.00 0.00 0.00 4.40
123 124 6.420913 AGAATATCGTTACACCTAATGCCT 57.579 37.500 0.00 0.00 0.00 4.75
124 125 6.827727 AGAATATCGTTACACCTAATGCCTT 58.172 36.000 0.00 0.00 0.00 4.35
125 126 6.929606 AGAATATCGTTACACCTAATGCCTTC 59.070 38.462 0.00 0.00 0.00 3.46
126 127 3.965379 TCGTTACACCTAATGCCTTCA 57.035 42.857 0.00 0.00 0.00 3.02
127 128 4.481368 TCGTTACACCTAATGCCTTCAT 57.519 40.909 0.00 0.00 33.53 2.57
128 129 4.188462 TCGTTACACCTAATGCCTTCATG 58.812 43.478 0.00 0.00 32.23 3.07
129 130 3.938963 CGTTACACCTAATGCCTTCATGT 59.061 43.478 0.00 0.00 32.23 3.21
130 131 5.105269 TCGTTACACCTAATGCCTTCATGTA 60.105 40.000 0.00 0.00 32.23 2.29
131 132 5.583061 CGTTACACCTAATGCCTTCATGTAA 59.417 40.000 0.00 0.00 32.23 2.41
132 133 6.260050 CGTTACACCTAATGCCTTCATGTAAT 59.740 38.462 0.00 0.00 32.23 1.89
162 163 9.935682 ATGTAAATTGTATGAGAAATTGTAGCG 57.064 29.630 0.00 0.00 0.00 4.26
163 164 7.908082 TGTAAATTGTATGAGAAATTGTAGCGC 59.092 33.333 0.00 0.00 0.00 5.92
164 165 4.514545 TTGTATGAGAAATTGTAGCGCG 57.485 40.909 0.00 0.00 0.00 6.86
165 166 2.863740 TGTATGAGAAATTGTAGCGCGG 59.136 45.455 8.83 0.00 0.00 6.46
166 167 1.299541 ATGAGAAATTGTAGCGCGGG 58.700 50.000 8.83 0.00 0.00 6.13
167 168 1.352056 GAGAAATTGTAGCGCGGGC 59.648 57.895 17.92 17.92 40.37 6.13
191 192 3.981308 CACGTGGTGGGCCTTTAG 58.019 61.111 7.95 0.00 35.27 1.85
192 193 1.072505 CACGTGGTGGGCCTTTAGT 59.927 57.895 7.95 0.00 35.27 2.24
193 194 0.953960 CACGTGGTGGGCCTTTAGTC 60.954 60.000 7.95 0.00 35.27 2.59
194 195 1.376812 CGTGGTGGGCCTTTAGTCC 60.377 63.158 4.53 0.00 35.27 3.85
195 196 1.001269 GTGGTGGGCCTTTAGTCCC 60.001 63.158 4.53 0.00 42.93 4.46
196 197 2.271173 GGTGGGCCTTTAGTCCCG 59.729 66.667 4.53 0.00 45.60 5.14
197 198 2.271173 GTGGGCCTTTAGTCCCGG 59.729 66.667 4.53 0.00 45.60 5.73
198 199 3.012722 TGGGCCTTTAGTCCCGGG 61.013 66.667 16.85 16.85 45.60 5.73
199 200 3.013327 GGGCCTTTAGTCCCGGGT 61.013 66.667 22.86 4.16 32.00 5.28
200 201 2.588439 GGCCTTTAGTCCCGGGTC 59.412 66.667 22.86 16.35 0.00 4.46
201 202 2.186125 GCCTTTAGTCCCGGGTCG 59.814 66.667 22.86 2.49 0.00 4.79
202 203 2.653087 GCCTTTAGTCCCGGGTCGT 61.653 63.158 22.86 8.90 0.00 4.34
203 204 1.217244 CCTTTAGTCCCGGGTCGTG 59.783 63.158 22.86 7.77 0.00 4.35
204 205 1.252904 CCTTTAGTCCCGGGTCGTGA 61.253 60.000 22.86 2.92 0.00 4.35
205 206 0.108945 CTTTAGTCCCGGGTCGTGAC 60.109 60.000 22.86 11.21 34.71 3.67
206 207 1.865788 TTTAGTCCCGGGTCGTGACG 61.866 60.000 22.86 0.00 39.07 4.35
207 208 2.746412 TTAGTCCCGGGTCGTGACGA 62.746 60.000 22.86 2.39 39.07 4.20
208 209 2.746412 TAGTCCCGGGTCGTGACGAA 62.746 60.000 22.86 1.70 39.07 3.85
209 210 3.673484 TCCCGGGTCGTGACGAAC 61.673 66.667 22.86 15.71 43.47 3.95
214 215 4.651008 GGTCGTGACGAACCGGCA 62.651 66.667 12.78 0.00 45.13 5.69
219 220 4.084265 TGACGAACCGGCACTAGA 57.916 55.556 0.00 0.00 41.22 2.43
220 221 1.880894 TGACGAACCGGCACTAGAG 59.119 57.895 0.00 0.00 41.22 2.43
221 222 1.139095 GACGAACCGGCACTAGAGG 59.861 63.158 0.00 0.00 33.63 3.69
222 223 1.303888 ACGAACCGGCACTAGAGGA 60.304 57.895 0.00 0.00 0.00 3.71
223 224 1.313812 ACGAACCGGCACTAGAGGAG 61.314 60.000 0.00 0.00 0.00 3.69
224 225 1.142097 GAACCGGCACTAGAGGAGC 59.858 63.158 0.00 0.00 0.00 4.70
225 226 2.299503 GAACCGGCACTAGAGGAGCC 62.300 65.000 0.00 3.46 44.89 4.70
226 227 2.443016 CCGGCACTAGAGGAGCCT 60.443 66.667 14.73 0.00 46.14 4.58
227 228 2.060980 CCGGCACTAGAGGAGCCTT 61.061 63.158 14.73 0.00 46.14 4.35
228 229 1.617947 CCGGCACTAGAGGAGCCTTT 61.618 60.000 14.73 0.00 46.14 3.11
229 230 1.112113 CGGCACTAGAGGAGCCTTTA 58.888 55.000 14.73 0.00 46.14 1.85
230 231 1.067821 CGGCACTAGAGGAGCCTTTAG 59.932 57.143 11.41 11.41 46.14 1.85
231 232 2.112190 GGCACTAGAGGAGCCTTTAGT 58.888 52.381 12.55 12.55 42.38 2.24
232 233 2.101750 GGCACTAGAGGAGCCTTTAGTC 59.898 54.545 14.79 10.60 40.54 2.59
233 234 3.028130 GCACTAGAGGAGCCTTTAGTCT 58.972 50.000 14.79 0.00 40.54 3.24
234 235 3.067601 GCACTAGAGGAGCCTTTAGTCTC 59.932 52.174 14.79 7.99 40.54 3.36
239 240 1.574263 GGAGCCTTTAGTCTCCACCT 58.426 55.000 2.07 0.00 46.24 4.00
240 241 1.909986 GGAGCCTTTAGTCTCCACCTT 59.090 52.381 2.07 0.00 46.24 3.50
241 242 2.306219 GGAGCCTTTAGTCTCCACCTTT 59.694 50.000 2.07 0.00 46.24 3.11
242 243 3.244946 GGAGCCTTTAGTCTCCACCTTTT 60.245 47.826 2.07 0.00 46.24 2.27
243 244 4.019591 GGAGCCTTTAGTCTCCACCTTTTA 60.020 45.833 2.07 0.00 46.24 1.52
244 245 5.167303 AGCCTTTAGTCTCCACCTTTTAG 57.833 43.478 0.00 0.00 0.00 1.85
245 246 4.597940 AGCCTTTAGTCTCCACCTTTTAGT 59.402 41.667 0.00 0.00 0.00 2.24
246 247 4.695928 GCCTTTAGTCTCCACCTTTTAGTG 59.304 45.833 0.00 0.00 37.51 2.74
247 248 4.695928 CCTTTAGTCTCCACCTTTTAGTGC 59.304 45.833 0.00 0.00 36.38 4.40
248 249 2.861147 AGTCTCCACCTTTTAGTGCC 57.139 50.000 0.00 0.00 36.38 5.01
249 250 1.002087 AGTCTCCACCTTTTAGTGCCG 59.998 52.381 0.00 0.00 36.38 5.69
250 251 0.323629 TCTCCACCTTTTAGTGCCGG 59.676 55.000 0.00 0.00 36.38 6.13
251 252 0.036306 CTCCACCTTTTAGTGCCGGT 59.964 55.000 1.90 0.00 36.38 5.28
252 253 0.475044 TCCACCTTTTAGTGCCGGTT 59.525 50.000 1.90 0.00 36.38 4.44
253 254 0.596082 CCACCTTTTAGTGCCGGTTG 59.404 55.000 1.90 0.00 36.38 3.77
254 255 0.596082 CACCTTTTAGTGCCGGTTGG 59.404 55.000 1.90 0.00 38.77 3.77
255 256 0.184211 ACCTTTTAGTGCCGGTTGGT 59.816 50.000 1.90 0.00 37.67 3.67
256 257 1.420891 ACCTTTTAGTGCCGGTTGGTA 59.579 47.619 1.90 0.00 37.67 3.25
257 258 2.158638 ACCTTTTAGTGCCGGTTGGTAA 60.159 45.455 1.90 0.00 37.67 2.85
258 259 2.885894 CCTTTTAGTGCCGGTTGGTAAA 59.114 45.455 1.90 0.00 37.67 2.01
259 260 3.304861 CCTTTTAGTGCCGGTTGGTAAAC 60.305 47.826 1.90 0.00 37.67 2.01
268 269 2.857186 GGTTGGTAAACCGGGACTAA 57.143 50.000 6.32 1.92 46.32 2.24
269 270 3.138884 GGTTGGTAAACCGGGACTAAA 57.861 47.619 6.32 0.00 46.32 1.85
270 271 3.076621 GGTTGGTAAACCGGGACTAAAG 58.923 50.000 6.32 0.00 46.32 1.85
271 272 3.076621 GTTGGTAAACCGGGACTAAAGG 58.923 50.000 6.32 0.00 39.43 3.11
272 273 2.337849 TGGTAAACCGGGACTAAAGGT 58.662 47.619 6.32 0.00 40.50 3.50
273 274 2.302733 TGGTAAACCGGGACTAAAGGTC 59.697 50.000 6.32 0.00 40.58 3.85
284 285 3.505836 GACTAAAGGTCCTTACGAACCG 58.494 50.000 4.04 0.00 40.63 4.44
285 286 2.232208 ACTAAAGGTCCTTACGAACCGG 59.768 50.000 4.04 0.00 40.63 5.28
286 287 0.322648 AAAGGTCCTTACGAACCGGG 59.677 55.000 6.32 0.00 40.63 5.73
287 288 0.542702 AAGGTCCTTACGAACCGGGA 60.543 55.000 6.32 0.00 40.63 5.14
288 289 1.216444 GGTCCTTACGAACCGGGAC 59.784 63.158 6.32 0.00 45.18 4.46
289 290 1.253593 GGTCCTTACGAACCGGGACT 61.254 60.000 6.32 0.00 45.23 3.85
290 291 1.463674 GTCCTTACGAACCGGGACTA 58.536 55.000 6.32 0.00 43.30 2.59
291 292 1.818674 GTCCTTACGAACCGGGACTAA 59.181 52.381 6.32 0.00 43.30 2.24
292 293 2.231235 GTCCTTACGAACCGGGACTAAA 59.769 50.000 6.32 0.00 43.30 1.85
293 294 2.231235 TCCTTACGAACCGGGACTAAAC 59.769 50.000 6.32 0.00 0.00 2.01
294 295 2.610433 CTTACGAACCGGGACTAAACC 58.390 52.381 6.32 0.00 0.00 3.27
295 296 0.894835 TACGAACCGGGACTAAACCC 59.105 55.000 6.32 0.00 45.92 4.11
303 304 1.664873 GGGACTAAACCCGATTCTGC 58.335 55.000 0.00 0.00 40.49 4.26
304 305 1.065709 GGGACTAAACCCGATTCTGCA 60.066 52.381 0.00 0.00 40.49 4.41
305 306 2.007608 GGACTAAACCCGATTCTGCAC 58.992 52.381 0.00 0.00 0.00 4.57
306 307 2.354805 GGACTAAACCCGATTCTGCACT 60.355 50.000 0.00 0.00 0.00 4.40
307 308 3.118884 GGACTAAACCCGATTCTGCACTA 60.119 47.826 0.00 0.00 0.00 2.74
308 309 4.113354 GACTAAACCCGATTCTGCACTAG 58.887 47.826 0.00 0.00 0.00 2.57
309 310 3.514309 ACTAAACCCGATTCTGCACTAGT 59.486 43.478 0.00 0.00 0.00 2.57
310 311 2.386661 AACCCGATTCTGCACTAGTG 57.613 50.000 18.93 18.93 0.00 2.74
311 312 1.267121 ACCCGATTCTGCACTAGTGT 58.733 50.000 23.44 3.56 0.00 3.55
312 313 1.204941 ACCCGATTCTGCACTAGTGTC 59.795 52.381 23.44 15.87 0.00 3.67
313 314 1.550065 CCGATTCTGCACTAGTGTCG 58.450 55.000 23.44 21.57 35.61 4.35
319 320 2.092323 TCTGCACTAGTGTCGTAGCAT 58.908 47.619 23.44 0.00 0.00 3.79
324 325 3.487574 GCACTAGTGTCGTAGCATGAATC 59.512 47.826 23.44 0.00 0.00 2.52
351 352 3.303725 CGTTGAACCGTTGTCATTGTCAT 60.304 43.478 0.00 0.00 0.00 3.06
352 353 4.606961 GTTGAACCGTTGTCATTGTCATT 58.393 39.130 0.00 0.00 0.00 2.57
353 354 4.221926 TGAACCGTTGTCATTGTCATTG 57.778 40.909 0.00 0.00 0.00 2.82
354 355 3.629855 TGAACCGTTGTCATTGTCATTGT 59.370 39.130 0.00 0.00 0.00 2.71
355 356 3.896648 ACCGTTGTCATTGTCATTGTC 57.103 42.857 0.00 0.00 0.00 3.18
356 357 3.210227 ACCGTTGTCATTGTCATTGTCA 58.790 40.909 0.00 0.00 0.00 3.58
358 359 4.097135 ACCGTTGTCATTGTCATTGTCAAA 59.903 37.500 8.35 0.00 0.00 2.69
359 360 4.676471 CCGTTGTCATTGTCATTGTCAAAG 59.324 41.667 8.35 9.77 0.00 2.77
360 361 5.505489 CCGTTGTCATTGTCATTGTCAAAGA 60.505 40.000 16.05 0.00 0.00 2.52
361 362 5.970612 CGTTGTCATTGTCATTGTCAAAGAA 59.029 36.000 11.90 0.00 0.00 2.52
362 363 6.075415 CGTTGTCATTGTCATTGTCAAAGAAC 60.075 38.462 11.90 2.29 0.00 3.01
363 364 6.448207 TGTCATTGTCATTGTCAAAGAACA 57.552 33.333 3.74 4.80 0.00 3.18
364 365 6.497437 TGTCATTGTCATTGTCAAAGAACAG 58.503 36.000 3.74 0.00 0.00 3.16
365 366 5.400485 GTCATTGTCATTGTCAAAGAACAGC 59.600 40.000 3.74 0.00 0.00 4.40
366 367 3.988379 TGTCATTGTCAAAGAACAGCC 57.012 42.857 0.00 0.00 0.00 4.85
367 368 2.622942 TGTCATTGTCAAAGAACAGCCC 59.377 45.455 0.00 0.00 0.00 5.19
368 369 2.622942 GTCATTGTCAAAGAACAGCCCA 59.377 45.455 0.00 0.00 0.00 5.36
369 370 2.886523 TCATTGTCAAAGAACAGCCCAG 59.113 45.455 0.00 0.00 0.00 4.45
401 402 1.676006 CAAAGAGGGAAACGTTGCACT 59.324 47.619 11.96 11.96 0.00 4.40
413 414 2.612212 ACGTTGCACTTTAGGTTGACTG 59.388 45.455 0.00 0.00 0.00 3.51
454 455 2.562296 AGCTTCAATCCTTCTACCCCA 58.438 47.619 0.00 0.00 0.00 4.96
541 542 2.728817 GGCCGGTCGATCGAGAAT 59.271 61.111 21.90 0.00 0.00 2.40
556 557 4.160635 AATTGGCACGCGCGCTAC 62.161 61.111 32.58 20.26 39.92 3.58
569 570 3.297461 CGCGCGCTACTTATATTGACTAC 59.703 47.826 30.48 0.00 0.00 2.73
570 571 3.297461 GCGCGCTACTTATATTGACTACG 59.703 47.826 26.67 0.00 0.00 3.51
573 642 5.727135 CGCGCTACTTATATTGACTACGTAG 59.273 44.000 20.97 20.97 0.00 3.51
578 647 6.720112 ACTTATATTGACTACGTAGGCCAA 57.280 37.500 25.46 25.03 0.00 4.52
585 654 3.259876 TGACTACGTAGGCCAATTTGACT 59.740 43.478 25.46 0.00 0.00 3.41
596 665 5.128663 AGGCCAATTTGACTGTTACTTGTTT 59.871 36.000 5.01 0.00 0.00 2.83
597 666 5.815222 GGCCAATTTGACTGTTACTTGTTTT 59.185 36.000 0.00 0.00 0.00 2.43
598 667 6.315144 GGCCAATTTGACTGTTACTTGTTTTT 59.685 34.615 0.00 0.00 0.00 1.94
619 688 7.899178 TTTTGAGATAGATCAAAGCACGTAA 57.101 32.000 0.00 0.00 46.70 3.18
632 707 2.479837 GCACGTAACCATGCTAGCATA 58.520 47.619 29.12 11.86 38.84 3.14
633 708 2.221055 GCACGTAACCATGCTAGCATAC 59.779 50.000 29.12 21.48 38.84 2.39
634 709 2.471370 CACGTAACCATGCTAGCATACG 59.529 50.000 33.30 33.30 39.28 3.06
635 710 2.100252 ACGTAACCATGCTAGCATACGT 59.900 45.455 34.30 34.30 40.66 3.57
636 711 3.120792 CGTAACCATGCTAGCATACGTT 58.879 45.455 29.64 29.93 32.98 3.99
637 712 3.181774 CGTAACCATGCTAGCATACGTTC 59.818 47.826 30.82 23.53 32.98 3.95
676 751 3.002965 CGTTGAAAAGTTGTACCACTCCC 59.997 47.826 0.00 0.00 0.00 4.30
684 762 1.513858 TGTACCACTCCCACAAACCT 58.486 50.000 0.00 0.00 0.00 3.50
715 793 2.224549 TGCCGTTGTTTTACCGAATCAG 59.775 45.455 0.00 0.00 0.00 2.90
756 834 0.686769 AGAGGGCCGAATCCTACGTT 60.687 55.000 0.00 0.00 34.21 3.99
787 865 4.421948 ACAGGAAGACTAGTTATTTCGCG 58.578 43.478 0.00 0.00 0.00 5.87
788 866 4.082354 ACAGGAAGACTAGTTATTTCGCGT 60.082 41.667 5.77 0.86 0.00 6.01
794 872 2.410730 ACTAGTTATTTCGCGTGCACAC 59.589 45.455 18.64 6.15 0.00 3.82
795 873 1.222300 AGTTATTTCGCGTGCACACA 58.778 45.000 18.64 0.00 0.00 3.72
796 874 1.804151 AGTTATTTCGCGTGCACACAT 59.196 42.857 18.64 0.00 0.00 3.21
822 904 0.527600 GCTGCACATATGGTCGTCGA 60.528 55.000 7.80 0.00 0.00 4.20
823 905 1.869754 GCTGCACATATGGTCGTCGAT 60.870 52.381 7.80 0.00 0.00 3.59
824 906 2.054363 CTGCACATATGGTCGTCGATC 58.946 52.381 7.80 0.00 0.00 3.69
825 907 1.053048 GCACATATGGTCGTCGATCG 58.947 55.000 9.36 9.36 41.41 3.69
891 979 3.082548 GAGGTCTCCTTTTAAAGCACCC 58.917 50.000 12.25 4.73 31.76 4.61
961 1055 2.356553 GCTGCCACAACGTACCGA 60.357 61.111 0.00 0.00 0.00 4.69
981 1075 0.734889 ACCCCTGTCGATTACGTACG 59.265 55.000 15.01 15.01 40.69 3.67
1003 1108 0.178992 CTTGGTGGTGGTGGACATGT 60.179 55.000 0.00 0.00 0.00 3.21
1011 1116 1.228552 GGTGGACATGTTGGGCAGT 60.229 57.895 0.00 0.00 0.00 4.40
1026 1131 1.905922 GCAGTCCGAGAAAGCAGCAC 61.906 60.000 0.00 0.00 0.00 4.40
1027 1132 1.373497 AGTCCGAGAAAGCAGCACG 60.373 57.895 0.00 0.00 0.00 5.34
1028 1133 2.048222 TCCGAGAAAGCAGCACGG 60.048 61.111 0.00 0.00 44.09 4.94
1168 1273 3.603965 ACACCTTGGGGAACAACAATA 57.396 42.857 0.00 0.00 34.76 1.90
1169 1274 3.917300 ACACCTTGGGGAACAACAATAA 58.083 40.909 0.00 0.00 34.76 1.40
1170 1275 4.488770 ACACCTTGGGGAACAACAATAAT 58.511 39.130 0.00 0.00 34.76 1.28
1189 1294 2.808523 TGGATCGTCATCAGCTCATC 57.191 50.000 0.00 0.00 0.00 2.92
1190 1295 1.000938 TGGATCGTCATCAGCTCATCG 60.001 52.381 0.00 0.00 0.00 3.84
1191 1296 1.000827 GGATCGTCATCAGCTCATCGT 60.001 52.381 0.00 0.00 0.00 3.73
1228 1336 2.357034 CCAACCTCACGGACACGG 60.357 66.667 0.00 0.00 46.48 4.94
1229 1337 2.732016 CAACCTCACGGACACGGA 59.268 61.111 0.00 0.00 46.48 4.69
1230 1338 1.663702 CAACCTCACGGACACGGAC 60.664 63.158 0.00 0.00 46.48 4.79
1231 1339 2.129146 AACCTCACGGACACGGACA 61.129 57.895 0.00 0.00 46.48 4.02
1232 1340 2.049433 CCTCACGGACACGGACAC 60.049 66.667 0.00 0.00 46.48 3.67
1233 1341 2.428569 CTCACGGACACGGACACG 60.429 66.667 0.00 0.00 46.48 4.49
1234 1342 2.900167 CTCACGGACACGGACACGA 61.900 63.158 0.00 0.00 46.48 4.35
1235 1343 2.728383 CACGGACACGGACACGAC 60.728 66.667 0.00 0.00 46.48 4.34
1836 2126 1.445582 GGCGGTGTTCGACGAGATT 60.446 57.895 0.00 0.00 42.43 2.40
2230 2549 0.817634 CCGGTGGTGCTTGAACTTGA 60.818 55.000 0.00 0.00 0.00 3.02
2238 2557 5.182001 GTGGTGCTTGAACTTGACATAATCT 59.818 40.000 0.00 0.00 0.00 2.40
2260 2579 6.993079 TCTGTCACTTTGATGCTAGAACTTA 58.007 36.000 0.00 0.00 0.00 2.24
2264 2583 6.037610 GTCACTTTGATGCTAGAACTTATGGG 59.962 42.308 0.00 0.00 0.00 4.00
2302 2622 0.690762 ATAACTTGGCTCGGGTGTGT 59.309 50.000 0.00 0.00 0.00 3.72
2351 2671 2.032030 CGAAATCAACGTTGACTTGGCT 60.032 45.455 31.87 13.39 40.49 4.75
2374 2694 3.485346 AACGTGGCATGGAACCCGT 62.485 57.895 12.05 1.06 36.20 5.28
2397 2717 2.127609 GCGACTTGAAGCGTGTGC 60.128 61.111 9.86 0.00 43.24 4.57
2499 2947 1.466167 CTCTCGCATGTTCAACAAGGG 59.534 52.381 3.53 3.53 32.13 3.95
2574 3042 0.387929 GATGATGCATGTGGGGCTTG 59.612 55.000 2.46 0.00 0.00 4.01
2579 3047 2.228545 TGCATGTGGGGCTTGAATTA 57.771 45.000 0.00 0.00 0.00 1.40
2631 3099 4.562789 GCGCTGGTTCCTTTTGAAATATTC 59.437 41.667 0.00 0.00 33.94 1.75
2782 3279 6.180472 AGTAAATGTGGGAGAATACACTTGG 58.820 40.000 0.00 0.00 38.39 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.671781 GCGGCTATAGCTCCCACATG 60.672 60.000 23.53 0.00 41.70 3.21
1 2 1.121407 TGCGGCTATAGCTCCCACAT 61.121 55.000 23.53 0.00 41.70 3.21
2 3 1.121407 ATGCGGCTATAGCTCCCACA 61.121 55.000 23.53 14.47 41.70 4.17
4 5 1.877576 CGATGCGGCTATAGCTCCCA 61.878 60.000 23.53 17.22 41.70 4.37
5 6 1.153745 CGATGCGGCTATAGCTCCC 60.154 63.158 23.53 12.57 41.70 4.30
6 7 0.179150 CTCGATGCGGCTATAGCTCC 60.179 60.000 23.53 14.86 41.70 4.70
7 8 0.179150 CCTCGATGCGGCTATAGCTC 60.179 60.000 23.53 15.77 41.70 4.09
8 9 1.599606 CCCTCGATGCGGCTATAGCT 61.600 60.000 23.53 4.19 41.70 3.32
9 10 1.153745 CCCTCGATGCGGCTATAGC 60.154 63.158 16.78 16.78 41.14 2.97
10 11 1.153745 GCCCTCGATGCGGCTATAG 60.154 63.158 10.26 0.00 42.21 1.31
11 12 2.970639 GCCCTCGATGCGGCTATA 59.029 61.111 10.26 0.00 42.21 1.31
18 19 2.526120 GCTGTAACGCCCTCGATGC 61.526 63.158 0.00 0.00 39.41 3.91
19 20 2.230940 CGCTGTAACGCCCTCGATG 61.231 63.158 0.00 0.00 39.41 3.84
20 21 1.378882 TACGCTGTAACGCCCTCGAT 61.379 55.000 0.00 0.00 39.41 3.59
21 22 2.039974 TACGCTGTAACGCCCTCGA 61.040 57.895 0.00 0.00 39.41 4.04
22 23 1.870901 GTACGCTGTAACGCCCTCG 60.871 63.158 0.00 0.00 42.43 4.63
23 24 1.870901 CGTACGCTGTAACGCCCTC 60.871 63.158 0.52 0.00 36.19 4.30
24 25 2.180017 CGTACGCTGTAACGCCCT 59.820 61.111 0.52 0.00 36.19 5.19
25 26 1.870901 CTCGTACGCTGTAACGCCC 60.871 63.158 11.24 0.00 38.94 6.13
26 27 2.502965 GCTCGTACGCTGTAACGCC 61.503 63.158 11.24 0.00 38.94 5.68
27 28 1.339235 TTGCTCGTACGCTGTAACGC 61.339 55.000 11.24 4.78 38.94 4.84
28 29 1.265568 ATTGCTCGTACGCTGTAACG 58.734 50.000 11.24 0.00 40.40 3.18
29 30 2.664568 TGAATTGCTCGTACGCTGTAAC 59.335 45.455 11.24 2.23 0.00 2.50
30 31 2.949142 TGAATTGCTCGTACGCTGTAA 58.051 42.857 11.24 11.72 0.00 2.41
31 32 2.640346 TGAATTGCTCGTACGCTGTA 57.360 45.000 11.24 2.47 0.00 2.74
32 33 1.726791 CTTGAATTGCTCGTACGCTGT 59.273 47.619 11.24 0.00 0.00 4.40
33 34 1.992667 TCTTGAATTGCTCGTACGCTG 59.007 47.619 11.24 7.07 0.00 5.18
34 35 2.094700 TCTCTTGAATTGCTCGTACGCT 60.095 45.455 11.24 0.00 0.00 5.07
35 36 2.259618 TCTCTTGAATTGCTCGTACGC 58.740 47.619 11.24 0.00 0.00 4.42
36 37 4.903638 TTTCTCTTGAATTGCTCGTACG 57.096 40.909 9.53 9.53 31.56 3.67
37 38 7.426743 GCTATTTTTCTCTTGAATTGCTCGTAC 59.573 37.037 0.00 0.00 31.77 3.67
38 39 7.464358 GCTATTTTTCTCTTGAATTGCTCGTA 58.536 34.615 0.00 0.00 31.77 3.43
39 40 6.317857 GCTATTTTTCTCTTGAATTGCTCGT 58.682 36.000 0.00 0.00 31.77 4.18
40 41 5.450385 CGCTATTTTTCTCTTGAATTGCTCG 59.550 40.000 0.00 0.00 32.11 5.03
41 42 5.741040 CCGCTATTTTTCTCTTGAATTGCTC 59.259 40.000 0.00 0.00 32.11 4.26
42 43 5.393461 CCCGCTATTTTTCTCTTGAATTGCT 60.393 40.000 0.00 0.00 32.11 3.91
43 44 4.800471 CCCGCTATTTTTCTCTTGAATTGC 59.200 41.667 0.00 0.00 31.56 3.56
44 45 6.194796 TCCCGCTATTTTTCTCTTGAATTG 57.805 37.500 0.00 0.00 31.56 2.32
45 46 7.410120 AATCCCGCTATTTTTCTCTTGAATT 57.590 32.000 0.00 0.00 31.56 2.17
46 47 7.410120 AAATCCCGCTATTTTTCTCTTGAAT 57.590 32.000 0.00 0.00 31.56 2.57
47 48 6.834168 AAATCCCGCTATTTTTCTCTTGAA 57.166 33.333 0.00 0.00 0.00 2.69
48 49 6.834168 AAAATCCCGCTATTTTTCTCTTGA 57.166 33.333 1.39 0.00 35.96 3.02
49 50 6.183360 GCAAAAATCCCGCTATTTTTCTCTTG 60.183 38.462 12.89 6.67 43.67 3.02
50 51 5.869344 GCAAAAATCCCGCTATTTTTCTCTT 59.131 36.000 12.89 0.00 43.67 2.85
51 52 5.185828 AGCAAAAATCCCGCTATTTTTCTCT 59.814 36.000 12.89 10.89 43.67 3.10
52 53 5.289434 CAGCAAAAATCCCGCTATTTTTCTC 59.711 40.000 12.89 9.47 43.67 2.87
53 54 5.170748 CAGCAAAAATCCCGCTATTTTTCT 58.829 37.500 12.89 10.99 43.67 2.52
54 55 4.329801 CCAGCAAAAATCCCGCTATTTTTC 59.670 41.667 12.89 9.61 43.67 2.29
55 56 4.020662 TCCAGCAAAAATCCCGCTATTTTT 60.021 37.500 10.95 10.95 45.42 1.94
56 57 3.513515 TCCAGCAAAAATCCCGCTATTTT 59.486 39.130 0.00 1.39 40.02 1.82
57 58 3.096092 TCCAGCAAAAATCCCGCTATTT 58.904 40.909 0.00 0.00 33.82 1.40
58 59 2.427095 GTCCAGCAAAAATCCCGCTATT 59.573 45.455 0.00 0.00 33.82 1.73
59 60 2.024414 GTCCAGCAAAAATCCCGCTAT 58.976 47.619 0.00 0.00 33.82 2.97
60 61 1.459450 GTCCAGCAAAAATCCCGCTA 58.541 50.000 0.00 0.00 33.82 4.26
61 62 1.250840 GGTCCAGCAAAAATCCCGCT 61.251 55.000 0.00 0.00 36.10 5.52
62 63 1.215382 GGTCCAGCAAAAATCCCGC 59.785 57.895 0.00 0.00 0.00 6.13
63 64 0.527565 CTGGTCCAGCAAAAATCCCG 59.472 55.000 5.79 0.00 0.00 5.14
64 65 0.897621 CCTGGTCCAGCAAAAATCCC 59.102 55.000 13.99 0.00 0.00 3.85
65 66 1.546029 GACCTGGTCCAGCAAAAATCC 59.454 52.381 16.14 0.00 0.00 3.01
66 67 2.238521 TGACCTGGTCCAGCAAAAATC 58.761 47.619 23.42 4.32 0.00 2.17
67 68 2.380064 TGACCTGGTCCAGCAAAAAT 57.620 45.000 23.42 0.00 0.00 1.82
68 69 2.380064 ATGACCTGGTCCAGCAAAAA 57.620 45.000 23.42 3.03 0.00 1.94
69 70 2.642311 TCTATGACCTGGTCCAGCAAAA 59.358 45.455 23.42 3.79 0.00 2.44
70 71 2.265367 TCTATGACCTGGTCCAGCAAA 58.735 47.619 23.42 4.55 0.00 3.68
71 72 1.951209 TCTATGACCTGGTCCAGCAA 58.049 50.000 23.42 5.31 0.00 3.91
72 73 2.180946 ATCTATGACCTGGTCCAGCA 57.819 50.000 23.42 7.50 0.00 4.41
73 74 3.118261 TGAAATCTATGACCTGGTCCAGC 60.118 47.826 23.42 1.25 0.00 4.85
74 75 4.760530 TGAAATCTATGACCTGGTCCAG 57.239 45.455 23.42 19.11 0.00 3.86
75 76 5.439721 CATTGAAATCTATGACCTGGTCCA 58.560 41.667 23.42 12.21 32.15 4.02
76 77 4.823989 CCATTGAAATCTATGACCTGGTCC 59.176 45.833 23.42 6.46 32.15 4.46
77 78 5.684704 TCCATTGAAATCTATGACCTGGTC 58.315 41.667 19.96 19.96 32.15 4.02
78 79 5.429762 TCTCCATTGAAATCTATGACCTGGT 59.570 40.000 0.00 0.00 32.15 4.00
79 80 5.933617 TCTCCATTGAAATCTATGACCTGG 58.066 41.667 6.44 0.00 32.15 4.45
80 81 9.736414 ATATTCTCCATTGAAATCTATGACCTG 57.264 33.333 6.44 0.00 32.15 4.00
81 82 9.956640 GATATTCTCCATTGAAATCTATGACCT 57.043 33.333 6.44 0.00 32.15 3.85
82 83 8.877779 CGATATTCTCCATTGAAATCTATGACC 58.122 37.037 6.44 0.00 32.15 4.02
83 84 9.429359 ACGATATTCTCCATTGAAATCTATGAC 57.571 33.333 6.44 0.00 32.15 3.06
88 89 9.046296 GTGTAACGATATTCTCCATTGAAATCT 57.954 33.333 0.00 0.00 0.00 2.40
89 90 8.283291 GGTGTAACGATATTCTCCATTGAAATC 58.717 37.037 0.00 0.00 38.12 2.17
90 91 7.993183 AGGTGTAACGATATTCTCCATTGAAAT 59.007 33.333 0.00 0.00 38.12 2.17
91 92 7.335627 AGGTGTAACGATATTCTCCATTGAAA 58.664 34.615 0.00 0.00 38.12 2.69
92 93 6.884832 AGGTGTAACGATATTCTCCATTGAA 58.115 36.000 0.00 0.00 38.12 2.69
93 94 6.479972 AGGTGTAACGATATTCTCCATTGA 57.520 37.500 0.00 0.00 38.12 2.57
94 95 8.712363 CATTAGGTGTAACGATATTCTCCATTG 58.288 37.037 0.00 0.00 38.12 2.82
95 96 7.387948 GCATTAGGTGTAACGATATTCTCCATT 59.612 37.037 0.00 0.00 38.12 3.16
96 97 6.874134 GCATTAGGTGTAACGATATTCTCCAT 59.126 38.462 0.00 0.00 38.12 3.41
97 98 6.220930 GCATTAGGTGTAACGATATTCTCCA 58.779 40.000 0.00 0.00 38.12 3.86
98 99 5.638234 GGCATTAGGTGTAACGATATTCTCC 59.362 44.000 0.00 0.00 38.12 3.71
99 100 6.456501 AGGCATTAGGTGTAACGATATTCTC 58.543 40.000 0.00 0.00 38.12 2.87
100 101 6.420913 AGGCATTAGGTGTAACGATATTCT 57.579 37.500 0.00 0.00 38.12 2.40
101 102 6.704493 TGAAGGCATTAGGTGTAACGATATTC 59.296 38.462 0.00 0.00 38.12 1.75
102 103 6.588204 TGAAGGCATTAGGTGTAACGATATT 58.412 36.000 0.00 0.00 38.12 1.28
103 104 6.169557 TGAAGGCATTAGGTGTAACGATAT 57.830 37.500 0.00 0.00 38.12 1.63
104 105 5.601583 TGAAGGCATTAGGTGTAACGATA 57.398 39.130 0.00 0.00 38.12 2.92
105 106 4.481368 TGAAGGCATTAGGTGTAACGAT 57.519 40.909 0.00 0.00 38.12 3.73
106 107 3.965379 TGAAGGCATTAGGTGTAACGA 57.035 42.857 0.00 0.00 38.12 3.85
107 108 3.938963 ACATGAAGGCATTAGGTGTAACG 59.061 43.478 0.00 0.00 31.45 3.18
108 109 6.995511 TTACATGAAGGCATTAGGTGTAAC 57.004 37.500 0.00 0.00 30.68 2.50
109 110 7.342581 TCATTACATGAAGGCATTAGGTGTAA 58.657 34.615 13.93 13.93 36.11 2.41
110 111 6.894682 TCATTACATGAAGGCATTAGGTGTA 58.105 36.000 0.00 0.00 36.11 2.90
111 112 5.754782 TCATTACATGAAGGCATTAGGTGT 58.245 37.500 0.00 0.00 36.11 4.16
112 113 6.889301 ATCATTACATGAAGGCATTAGGTG 57.111 37.500 0.00 0.00 43.50 4.00
113 114 8.166061 ACATATCATTACATGAAGGCATTAGGT 58.834 33.333 0.00 0.00 43.50 3.08
114 115 8.571461 ACATATCATTACATGAAGGCATTAGG 57.429 34.615 0.00 0.00 43.50 2.69
136 137 9.935682 CGCTACAATTTCTCATACAATTTACAT 57.064 29.630 0.00 0.00 0.00 2.29
137 138 7.908082 GCGCTACAATTTCTCATACAATTTACA 59.092 33.333 0.00 0.00 0.00 2.41
138 139 7.110216 CGCGCTACAATTTCTCATACAATTTAC 59.890 37.037 5.56 0.00 0.00 2.01
139 140 7.123190 CGCGCTACAATTTCTCATACAATTTA 58.877 34.615 5.56 0.00 0.00 1.40
140 141 5.965334 CGCGCTACAATTTCTCATACAATTT 59.035 36.000 5.56 0.00 0.00 1.82
141 142 5.501715 CGCGCTACAATTTCTCATACAATT 58.498 37.500 5.56 0.00 0.00 2.32
142 143 4.024893 CCGCGCTACAATTTCTCATACAAT 60.025 41.667 5.56 0.00 0.00 2.71
143 144 3.308595 CCGCGCTACAATTTCTCATACAA 59.691 43.478 5.56 0.00 0.00 2.41
144 145 2.863740 CCGCGCTACAATTTCTCATACA 59.136 45.455 5.56 0.00 0.00 2.29
145 146 2.221055 CCCGCGCTACAATTTCTCATAC 59.779 50.000 5.56 0.00 0.00 2.39
146 147 2.479837 CCCGCGCTACAATTTCTCATA 58.520 47.619 5.56 0.00 0.00 2.15
147 148 1.299541 CCCGCGCTACAATTTCTCAT 58.700 50.000 5.56 0.00 0.00 2.90
148 149 1.366111 GCCCGCGCTACAATTTCTCA 61.366 55.000 5.56 0.00 0.00 3.27
149 150 1.090052 AGCCCGCGCTACAATTTCTC 61.090 55.000 5.56 0.00 46.08 2.87
150 151 1.078426 AGCCCGCGCTACAATTTCT 60.078 52.632 5.56 0.00 46.08 2.52
151 152 3.497879 AGCCCGCGCTACAATTTC 58.502 55.556 5.56 0.00 46.08 2.17
174 175 0.953960 GACTAAAGGCCCACCACGTG 60.954 60.000 9.08 9.08 39.06 4.49
175 176 1.373812 GACTAAAGGCCCACCACGT 59.626 57.895 0.00 0.00 39.06 4.49
176 177 1.376812 GGACTAAAGGCCCACCACG 60.377 63.158 0.00 0.00 39.06 4.94
177 178 1.001269 GGGACTAAAGGCCCACCAC 60.001 63.158 16.61 0.00 44.07 4.16
178 179 2.598787 CGGGACTAAAGGCCCACCA 61.599 63.158 21.10 0.00 44.94 4.17
179 180 2.271173 CGGGACTAAAGGCCCACC 59.729 66.667 21.10 0.00 44.94 4.61
180 181 2.271173 CCGGGACTAAAGGCCCAC 59.729 66.667 21.10 0.00 44.94 4.61
181 182 3.012722 CCCGGGACTAAAGGCCCA 61.013 66.667 18.48 0.00 44.94 5.36
182 183 3.013327 ACCCGGGACTAAAGGCCC 61.013 66.667 32.02 11.29 41.11 5.80
183 184 2.588439 GACCCGGGACTAAAGGCC 59.412 66.667 32.02 0.00 0.00 5.19
184 185 2.186125 CGACCCGGGACTAAAGGC 59.814 66.667 32.02 0.00 0.00 4.35
185 186 1.217244 CACGACCCGGGACTAAAGG 59.783 63.158 32.02 10.62 28.17 3.11
186 187 2.269978 TCACGACCCGGGACTAAAG 58.730 57.895 32.02 11.04 32.99 1.85
187 188 4.517663 TCACGACCCGGGACTAAA 57.482 55.556 32.02 6.51 32.99 1.85
192 193 3.673484 GTTCGTCACGACCCGGGA 61.673 66.667 32.02 0.00 36.75 5.14
193 194 4.729856 GGTTCGTCACGACCCGGG 62.730 72.222 22.25 22.25 34.89 5.73
197 198 4.651008 TGCCGGTTCGTCACGACC 62.651 66.667 0.00 3.89 34.89 4.79
198 199 2.462255 TAGTGCCGGTTCGTCACGAC 62.462 60.000 0.00 0.00 34.89 4.34
199 200 2.191354 CTAGTGCCGGTTCGTCACGA 62.191 60.000 1.90 0.00 35.97 4.35
200 201 1.800315 CTAGTGCCGGTTCGTCACG 60.800 63.158 1.90 0.00 35.97 4.35
201 202 0.456312 CTCTAGTGCCGGTTCGTCAC 60.456 60.000 1.90 1.53 0.00 3.67
202 203 1.592400 CCTCTAGTGCCGGTTCGTCA 61.592 60.000 1.90 0.00 0.00 4.35
203 204 1.139095 CCTCTAGTGCCGGTTCGTC 59.861 63.158 1.90 0.00 0.00 4.20
204 205 1.303888 TCCTCTAGTGCCGGTTCGT 60.304 57.895 1.90 0.00 0.00 3.85
205 206 1.433879 CTCCTCTAGTGCCGGTTCG 59.566 63.158 1.90 0.00 0.00 3.95
206 207 1.142097 GCTCCTCTAGTGCCGGTTC 59.858 63.158 1.90 0.00 0.00 3.62
207 208 2.359967 GGCTCCTCTAGTGCCGGTT 61.360 63.158 1.90 0.00 44.74 4.44
208 209 2.760385 GGCTCCTCTAGTGCCGGT 60.760 66.667 1.90 0.00 44.74 5.28
212 213 3.028130 AGACTAAAGGCTCCTCTAGTGC 58.972 50.000 6.65 0.28 30.73 4.40
213 214 3.634910 GGAGACTAAAGGCTCCTCTAGTG 59.365 52.174 22.53 0.00 45.72 2.74
214 215 3.905968 GGAGACTAAAGGCTCCTCTAGT 58.094 50.000 22.53 1.72 45.72 2.57
221 222 3.704800 AAAGGTGGAGACTAAAGGCTC 57.295 47.619 4.10 4.10 0.00 4.70
222 223 4.597940 ACTAAAAGGTGGAGACTAAAGGCT 59.402 41.667 0.00 0.00 0.00 4.58
223 224 4.695928 CACTAAAAGGTGGAGACTAAAGGC 59.304 45.833 0.00 0.00 33.95 4.35
224 225 4.695928 GCACTAAAAGGTGGAGACTAAAGG 59.304 45.833 0.00 0.00 37.65 3.11
225 226 4.695928 GGCACTAAAAGGTGGAGACTAAAG 59.304 45.833 0.00 0.00 37.65 1.85
226 227 4.648651 GGCACTAAAAGGTGGAGACTAAA 58.351 43.478 0.00 0.00 37.65 1.85
227 228 3.306502 CGGCACTAAAAGGTGGAGACTAA 60.307 47.826 0.00 0.00 37.65 2.24
228 229 2.232941 CGGCACTAAAAGGTGGAGACTA 59.767 50.000 0.00 0.00 37.65 2.59
229 230 1.002087 CGGCACTAAAAGGTGGAGACT 59.998 52.381 0.00 0.00 37.65 3.24
230 231 1.439679 CGGCACTAAAAGGTGGAGAC 58.560 55.000 0.00 0.00 37.65 3.36
231 232 0.323629 CCGGCACTAAAAGGTGGAGA 59.676 55.000 0.00 0.00 37.65 3.71
232 233 0.036306 ACCGGCACTAAAAGGTGGAG 59.964 55.000 0.00 0.00 37.65 3.86
233 234 0.475044 AACCGGCACTAAAAGGTGGA 59.525 50.000 0.00 0.00 37.03 4.02
234 235 0.596082 CAACCGGCACTAAAAGGTGG 59.404 55.000 0.00 0.00 37.03 4.61
235 236 0.596082 CCAACCGGCACTAAAAGGTG 59.404 55.000 0.00 0.00 37.03 4.00
236 237 0.184211 ACCAACCGGCACTAAAAGGT 59.816 50.000 0.00 0.00 38.88 3.50
237 238 2.188062 TACCAACCGGCACTAAAAGG 57.812 50.000 0.00 0.00 34.57 3.11
238 239 3.304861 GGTTTACCAACCGGCACTAAAAG 60.305 47.826 0.00 0.00 43.40 2.27
239 240 2.622470 GGTTTACCAACCGGCACTAAAA 59.378 45.455 0.00 0.00 43.40 1.52
240 241 2.228925 GGTTTACCAACCGGCACTAAA 58.771 47.619 0.00 0.00 43.40 1.85
241 242 1.894881 GGTTTACCAACCGGCACTAA 58.105 50.000 0.00 0.00 43.40 2.24
242 243 3.629548 GGTTTACCAACCGGCACTA 57.370 52.632 0.00 0.00 43.40 2.74
243 244 4.486887 GGTTTACCAACCGGCACT 57.513 55.556 0.00 0.00 43.40 4.40
250 251 3.076621 CCTTTAGTCCCGGTTTACCAAC 58.923 50.000 0.00 0.00 35.14 3.77
251 252 2.710471 ACCTTTAGTCCCGGTTTACCAA 59.290 45.455 0.00 0.00 35.14 3.67
252 253 2.302733 GACCTTTAGTCCCGGTTTACCA 59.697 50.000 0.00 0.00 39.84 3.25
253 254 2.977914 GACCTTTAGTCCCGGTTTACC 58.022 52.381 0.00 0.00 39.84 2.85
272 273 2.214376 TTAGTCCCGGTTCGTAAGGA 57.786 50.000 0.00 0.00 38.47 3.36
273 274 2.610433 GTTTAGTCCCGGTTCGTAAGG 58.390 52.381 0.00 0.00 38.47 2.69
274 275 2.610433 GGTTTAGTCCCGGTTCGTAAG 58.390 52.381 0.00 0.00 0.00 2.34
275 276 1.275010 GGGTTTAGTCCCGGTTCGTAA 59.725 52.381 0.00 0.00 37.93 3.18
276 277 0.894835 GGGTTTAGTCCCGGTTCGTA 59.105 55.000 0.00 0.00 37.93 3.43
277 278 1.673477 GGGTTTAGTCCCGGTTCGT 59.327 57.895 0.00 0.00 37.93 3.85
278 279 4.604114 GGGTTTAGTCCCGGTTCG 57.396 61.111 0.00 0.00 37.93 3.95
284 285 1.065709 TGCAGAATCGGGTTTAGTCCC 60.066 52.381 0.00 0.00 43.78 4.46
285 286 2.007608 GTGCAGAATCGGGTTTAGTCC 58.992 52.381 0.00 0.00 0.00 3.85
286 287 2.973945 AGTGCAGAATCGGGTTTAGTC 58.026 47.619 0.00 0.00 0.00 2.59
287 288 3.514309 ACTAGTGCAGAATCGGGTTTAGT 59.486 43.478 0.00 0.00 0.00 2.24
288 289 3.865745 CACTAGTGCAGAATCGGGTTTAG 59.134 47.826 10.54 0.00 0.00 1.85
289 290 3.259876 ACACTAGTGCAGAATCGGGTTTA 59.740 43.478 22.90 0.00 0.00 2.01
290 291 2.038557 ACACTAGTGCAGAATCGGGTTT 59.961 45.455 22.90 0.00 0.00 3.27
291 292 1.623811 ACACTAGTGCAGAATCGGGTT 59.376 47.619 22.90 0.00 0.00 4.11
292 293 1.204941 GACACTAGTGCAGAATCGGGT 59.795 52.381 22.90 0.00 0.00 5.28
293 294 1.799181 CGACACTAGTGCAGAATCGGG 60.799 57.143 22.90 0.00 33.98 5.14
294 295 1.135373 ACGACACTAGTGCAGAATCGG 60.135 52.381 26.66 14.71 38.58 4.18
295 296 2.264109 ACGACACTAGTGCAGAATCG 57.736 50.000 22.90 23.27 39.49 3.34
296 297 3.109619 GCTACGACACTAGTGCAGAATC 58.890 50.000 22.90 11.18 0.00 2.52
297 298 2.492088 TGCTACGACACTAGTGCAGAAT 59.508 45.455 22.90 2.36 0.00 2.40
298 299 1.883926 TGCTACGACACTAGTGCAGAA 59.116 47.619 22.90 6.85 0.00 3.02
299 300 1.530323 TGCTACGACACTAGTGCAGA 58.470 50.000 22.90 5.09 0.00 4.26
300 301 2.159379 TCATGCTACGACACTAGTGCAG 60.159 50.000 22.90 18.10 32.46 4.41
301 302 1.816224 TCATGCTACGACACTAGTGCA 59.184 47.619 22.90 13.91 33.08 4.57
302 303 2.561733 TCATGCTACGACACTAGTGC 57.438 50.000 22.90 14.03 0.00 4.40
303 304 3.726235 CGATTCATGCTACGACACTAGTG 59.274 47.826 21.44 21.44 0.00 2.74
304 305 3.626217 TCGATTCATGCTACGACACTAGT 59.374 43.478 0.00 0.00 0.00 2.57
305 306 4.210832 TCGATTCATGCTACGACACTAG 57.789 45.455 0.00 0.00 0.00 2.57
311 312 0.928451 CGCGTCGATTCATGCTACGA 60.928 55.000 0.00 6.59 35.66 3.43
312 313 1.200474 ACGCGTCGATTCATGCTACG 61.200 55.000 5.58 0.00 36.67 3.51
313 314 0.921347 AACGCGTCGATTCATGCTAC 59.079 50.000 14.44 0.00 0.00 3.58
319 320 1.610715 CGGTTCAACGCGTCGATTCA 61.611 55.000 14.44 0.00 0.00 2.57
324 325 2.128274 CAACGGTTCAACGCGTCG 60.128 61.111 14.44 14.58 37.37 5.12
351 352 1.214175 TCCTGGGCTGTTCTTTGACAA 59.786 47.619 0.00 0.00 0.00 3.18
352 353 0.843309 TCCTGGGCTGTTCTTTGACA 59.157 50.000 0.00 0.00 0.00 3.58
353 354 1.981256 TTCCTGGGCTGTTCTTTGAC 58.019 50.000 0.00 0.00 0.00 3.18
354 355 2.174639 TCTTTCCTGGGCTGTTCTTTGA 59.825 45.455 0.00 0.00 0.00 2.69
355 356 2.555757 CTCTTTCCTGGGCTGTTCTTTG 59.444 50.000 0.00 0.00 0.00 2.77
356 357 2.489802 CCTCTTTCCTGGGCTGTTCTTT 60.490 50.000 0.00 0.00 0.00 2.52
358 359 0.695347 CCTCTTTCCTGGGCTGTTCT 59.305 55.000 0.00 0.00 0.00 3.01
359 360 0.962855 GCCTCTTTCCTGGGCTGTTC 60.963 60.000 0.00 0.00 42.31 3.18
360 361 1.075659 GCCTCTTTCCTGGGCTGTT 59.924 57.895 0.00 0.00 42.31 3.16
361 362 2.759795 GCCTCTTTCCTGGGCTGT 59.240 61.111 0.00 0.00 42.31 4.40
362 363 2.437359 CGCCTCTTTCCTGGGCTG 60.437 66.667 0.00 0.00 43.29 4.85
363 364 4.416738 GCGCCTCTTTCCTGGGCT 62.417 66.667 0.00 0.00 43.29 5.19
365 366 3.567579 TTGGCGCCTCTTTCCTGGG 62.568 63.158 29.70 0.00 0.00 4.45
366 367 1.589716 CTTTGGCGCCTCTTTCCTGG 61.590 60.000 29.70 3.58 0.00 4.45
367 368 0.606401 TCTTTGGCGCCTCTTTCCTG 60.606 55.000 29.70 8.99 0.00 3.86
368 369 0.322008 CTCTTTGGCGCCTCTTTCCT 60.322 55.000 29.70 0.00 0.00 3.36
369 370 1.308783 CCTCTTTGGCGCCTCTTTCC 61.309 60.000 29.70 0.00 0.00 3.13
401 402 5.751586 AGTTCAAAGTCCAGTCAACCTAAA 58.248 37.500 0.00 0.00 0.00 1.85
413 414 4.354587 CTTGACAGCAAAGTTCAAAGTCC 58.645 43.478 0.00 0.00 32.73 3.85
490 491 2.885113 GGAAATGTTCCGGCCAGC 59.115 61.111 2.24 0.00 40.59 4.85
541 542 3.795581 TATAAGTAGCGCGCGTGCCAA 62.796 52.381 38.23 25.45 38.08 4.52
556 557 8.495949 CAAATTGGCCTACGTAGTCAATATAAG 58.504 37.037 27.00 18.36 43.93 1.73
569 570 4.000988 AGTAACAGTCAAATTGGCCTACG 58.999 43.478 3.32 0.00 0.00 3.51
570 571 5.240844 ACAAGTAACAGTCAAATTGGCCTAC 59.759 40.000 3.32 0.00 0.00 3.18
573 642 4.584327 ACAAGTAACAGTCAAATTGGCC 57.416 40.909 0.00 0.00 0.00 5.36
596 665 6.312918 GGTTACGTGCTTTGATCTATCTCAAA 59.687 38.462 0.00 0.00 41.56 2.69
597 666 5.810587 GGTTACGTGCTTTGATCTATCTCAA 59.189 40.000 0.00 0.00 33.42 3.02
598 667 5.105513 TGGTTACGTGCTTTGATCTATCTCA 60.106 40.000 0.00 0.00 0.00 3.27
619 688 1.762957 AGGAACGTATGCTAGCATGGT 59.237 47.619 35.20 28.49 37.82 3.55
632 707 0.531200 GAGGAACATCGGAGGAACGT 59.469 55.000 0.00 0.00 34.94 3.99
633 708 0.179108 GGAGGAACATCGGAGGAACG 60.179 60.000 0.00 0.00 0.00 3.95
634 709 1.137282 GAGGAGGAACATCGGAGGAAC 59.863 57.143 0.00 0.00 0.00 3.62
635 710 1.486211 GAGGAGGAACATCGGAGGAA 58.514 55.000 0.00 0.00 0.00 3.36
636 711 0.752009 CGAGGAGGAACATCGGAGGA 60.752 60.000 0.00 0.00 46.77 3.71
637 712 1.736586 CGAGGAGGAACATCGGAGG 59.263 63.158 0.00 0.00 46.77 4.30
715 793 2.793232 GTGTCAACGTGTGTCTTAGTCC 59.207 50.000 0.00 0.00 0.00 3.85
756 834 4.087182 ACTAGTCTTCCTGTTTCGATCCA 58.913 43.478 0.00 0.00 0.00 3.41
787 865 0.450583 CAGCCTGATGATGTGTGCAC 59.549 55.000 10.75 10.75 0.00 4.57
788 866 1.310216 GCAGCCTGATGATGTGTGCA 61.310 55.000 0.00 0.00 0.00 4.57
794 872 2.488153 CCATATGTGCAGCCTGATGATG 59.512 50.000 0.00 0.00 0.00 3.07
795 873 2.107726 ACCATATGTGCAGCCTGATGAT 59.892 45.455 0.00 0.00 0.00 2.45
796 874 1.491754 ACCATATGTGCAGCCTGATGA 59.508 47.619 0.00 0.00 0.00 2.92
822 904 4.545823 TCGCTTCAAAGTTCAAAACGAT 57.454 36.364 0.00 0.00 36.23 3.73
823 905 4.034626 TGATCGCTTCAAAGTTCAAAACGA 59.965 37.500 0.00 0.00 36.23 3.85
824 906 4.278858 TGATCGCTTCAAAGTTCAAAACG 58.721 39.130 0.00 0.00 36.23 3.60
825 907 5.514914 TGTTGATCGCTTCAAAGTTCAAAAC 59.485 36.000 2.70 0.00 45.71 2.43
891 979 4.246206 TACCGCCGTCGATCTGCG 62.246 66.667 16.18 16.18 46.38 5.18
961 1055 1.133025 CGTACGTAATCGACAGGGGTT 59.867 52.381 7.22 0.00 40.62 4.11
981 1075 0.470766 TGTCCACCACCACCAAGTAC 59.529 55.000 0.00 0.00 0.00 2.73
1003 1108 1.302511 GCTTTCTCGGACTGCCCAA 60.303 57.895 0.00 0.00 34.14 4.12
1011 1116 2.048222 CCGTGCTGCTTTCTCGGA 60.048 61.111 0.00 0.00 41.52 4.55
1132 1237 0.905357 GTGTAGGTGGAGATGCTGGT 59.095 55.000 0.00 0.00 0.00 4.00
1168 1273 3.661944 GATGAGCTGATGACGATCCATT 58.338 45.455 0.00 0.00 0.00 3.16
1169 1274 2.352519 CGATGAGCTGATGACGATCCAT 60.353 50.000 0.00 0.00 0.00 3.41
1170 1275 1.000938 CGATGAGCTGATGACGATCCA 60.001 52.381 0.00 0.00 0.00 3.41
1189 1294 0.176449 TCATGGGTCATCTGCTCACG 59.824 55.000 0.00 0.00 0.00 4.35
1190 1295 2.219458 CATCATGGGTCATCTGCTCAC 58.781 52.381 0.00 0.00 0.00 3.51
1191 1296 1.476291 GCATCATGGGTCATCTGCTCA 60.476 52.381 0.00 0.00 31.14 4.26
1227 1335 2.408241 CCTCTCCTCCGTCGTGTCC 61.408 68.421 0.00 0.00 0.00 4.02
1228 1336 2.408241 CCCTCTCCTCCGTCGTGTC 61.408 68.421 0.00 0.00 0.00 3.67
1229 1337 2.361357 CCCTCTCCTCCGTCGTGT 60.361 66.667 0.00 0.00 0.00 4.49
1230 1338 2.361357 ACCCTCTCCTCCGTCGTG 60.361 66.667 0.00 0.00 0.00 4.35
1231 1339 2.361357 CACCCTCTCCTCCGTCGT 60.361 66.667 0.00 0.00 0.00 4.34
1232 1340 1.935327 GAACACCCTCTCCTCCGTCG 61.935 65.000 0.00 0.00 0.00 5.12
1233 1341 1.605971 GGAACACCCTCTCCTCCGTC 61.606 65.000 0.00 0.00 0.00 4.79
1234 1342 1.609794 GGAACACCCTCTCCTCCGT 60.610 63.158 0.00 0.00 0.00 4.69
1235 1343 2.359967 GGGAACACCCTCTCCTCCG 61.360 68.421 0.00 0.00 40.49 4.63
1642 1923 0.464916 TCGGCGTAGAGGCTGATGTA 60.465 55.000 6.85 0.00 43.13 2.29
1836 2126 3.785859 CCTGCCAGCTCGCCCTTA 61.786 66.667 0.00 0.00 0.00 2.69
2162 2481 7.882791 TCAATTGAGAGTTACAAGGCTGATTTA 59.117 33.333 3.38 0.00 0.00 1.40
2199 2518 0.467290 ACCACCGGTGCAATTGACTT 60.467 50.000 29.75 0.82 32.98 3.01
2238 2557 6.595326 CCATAAGTTCTAGCATCAAAGTGACA 59.405 38.462 0.00 0.00 0.00 3.58
2260 2579 4.288398 TGCACCAATTCAATGTATCCCAT 58.712 39.130 0.00 0.00 34.36 4.00
2264 2583 8.810427 CAAGTTATTGCACCAATTCAATGTATC 58.190 33.333 0.00 0.00 35.54 2.24
2302 2622 5.521010 CCAAACGCGATTAGGACTGTATTTA 59.479 40.000 15.93 0.00 0.00 1.40
2368 2688 1.145377 AAGTCGCTGACAACGGGTT 59.855 52.632 10.52 0.00 34.60 4.11
2369 2689 1.594293 CAAGTCGCTGACAACGGGT 60.594 57.895 10.52 0.00 34.60 5.28
2374 2694 0.529773 ACGCTTCAAGTCGCTGACAA 60.530 50.000 10.52 0.00 34.60 3.18
2546 2996 5.311265 CCCACATGCATCATCACTATACTT 58.689 41.667 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.