Multiple sequence alignment - TraesCS3B01G464100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G464100 chr3B 100.000 3267 0 0 1 3267 707124095 707120829 0.000000e+00 6034.0
1 TraesCS3B01G464100 chr3B 87.335 987 114 7 1555 2533 708477879 708478862 0.000000e+00 1120.0
2 TraesCS3B01G464100 chr3B 87.335 529 62 4 2028 2551 708416141 708416669 5.150000e-168 601.0
3 TraesCS3B01G464100 chr3B 86.544 379 49 2 1558 1935 707128690 707128313 2.000000e-112 416.0
4 TraesCS3B01G464100 chr3B 87.222 360 42 3 1571 1928 708311137 708310780 1.200000e-109 407.0
5 TraesCS3B01G464100 chr3B 82.311 424 67 8 2114 2533 708310777 708310358 9.510000e-96 361.0
6 TraesCS3B01G464100 chr3B 100.000 147 0 0 3456 3602 707120640 707120494 4.580000e-69 272.0
7 TraesCS3B01G464100 chr3B 86.842 76 8 1 1322 1397 707134709 707134636 2.300000e-12 84.2
8 TraesCS3B01G464100 chr3D 93.356 2393 114 18 910 3265 535645419 535643035 0.000000e+00 3496.0
9 TraesCS3B01G464100 chr3D 92.197 1320 74 11 1952 3261 535589316 535588016 0.000000e+00 1840.0
10 TraesCS3B01G464100 chr3D 92.804 1084 42 9 912 1961 535590714 535589633 0.000000e+00 1537.0
11 TraesCS3B01G464100 chr3D 86.917 986 104 11 1558 2533 536210939 536211909 0.000000e+00 1083.0
12 TraesCS3B01G464100 chr3D 85.178 506 73 2 2028 2533 536239662 536240165 5.330000e-143 518.0
13 TraesCS3B01G464100 chr3D 85.749 407 55 3 1531 1936 535650936 535650532 9.240000e-116 427.0
14 TraesCS3B01G464100 chr3D 92.727 165 9 2 720 883 535590873 535590711 6.010000e-58 235.0
15 TraesCS3B01G464100 chr3D 93.082 159 9 1 720 878 535645576 535645420 7.780000e-57 231.0
16 TraesCS3B01G464100 chr3D 93.793 145 9 0 3458 3602 535643028 535642884 6.060000e-53 219.0
17 TraesCS3B01G464100 chr3D 91.946 149 9 2 3456 3602 535587561 535587414 4.710000e-49 206.0
18 TraesCS3B01G464100 chr3A 90.673 2198 124 26 1133 3267 670829223 670827044 0.000000e+00 2848.0
19 TraesCS3B01G464100 chr3A 85.564 381 53 2 1558 1937 670834595 670834216 7.250000e-107 398.0
20 TraesCS3B01G464100 chr3A 80.756 582 39 38 575 1124 670829844 670829304 1.570000e-103 387.0
21 TraesCS3B01G464100 chr3A 81.368 424 74 3 2114 2533 671660777 671660355 1.240000e-89 340.0
22 TraesCS3B01G464100 chr7A 77.692 260 39 12 3 248 558087116 558087370 1.350000e-29 141.0
23 TraesCS3B01G464100 chr7A 76.953 256 42 13 11 253 730832124 730831873 2.920000e-26 130.0
24 TraesCS3B01G464100 chr1D 79.524 210 32 11 11 214 383725882 383725678 4.850000e-29 139.0
25 TraesCS3B01G464100 chr1A 77.559 254 41 15 11 253 483652016 483651768 4.850000e-29 139.0
26 TraesCS3B01G464100 chr1A 80.791 177 24 7 14 187 506367138 506367307 2.920000e-26 130.0
27 TraesCS3B01G464100 chr5D 80.220 182 26 8 1 180 450213914 450214087 1.050000e-25 128.0
28 TraesCS3B01G464100 chr4D 79.429 175 31 5 13 187 386496701 386496532 6.320000e-23 119.0
29 TraesCS3B01G464100 chr2B 73.950 357 65 22 3 345 666728061 666727719 6.320000e-23 119.0
30 TraesCS3B01G464100 chr6D 84.252 127 12 7 65 188 5973963 5973842 2.270000e-22 117.0
31 TraesCS3B01G464100 chr1B 92.000 75 6 0 1327 1401 566983763 566983689 4.920000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G464100 chr3B 707120494 707124095 3601 True 3153.000000 6034 100.000000 1 3602 2 chr3B.!!$R3 3601
1 TraesCS3B01G464100 chr3B 708477879 708478862 983 False 1120.000000 1120 87.335000 1555 2533 1 chr3B.!!$F2 978
2 TraesCS3B01G464100 chr3B 708416141 708416669 528 False 601.000000 601 87.335000 2028 2551 1 chr3B.!!$F1 523
3 TraesCS3B01G464100 chr3B 708310358 708311137 779 True 384.000000 407 84.766500 1571 2533 2 chr3B.!!$R4 962
4 TraesCS3B01G464100 chr3D 535642884 535645576 2692 True 1315.333333 3496 93.410333 720 3602 3 chr3D.!!$R3 2882
5 TraesCS3B01G464100 chr3D 536210939 536211909 970 False 1083.000000 1083 86.917000 1558 2533 1 chr3D.!!$F1 975
6 TraesCS3B01G464100 chr3D 535587414 535590873 3459 True 954.500000 1840 92.418500 720 3602 4 chr3D.!!$R2 2882
7 TraesCS3B01G464100 chr3D 536239662 536240165 503 False 518.000000 518 85.178000 2028 2533 1 chr3D.!!$F2 505
8 TraesCS3B01G464100 chr3A 670827044 670829844 2800 True 1617.500000 2848 85.714500 575 3267 2 chr3A.!!$R3 2692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 485 0.108615 CCGTCAGCCAAGAATCGACT 60.109 55.0 0.0 0.0 0.0 4.18 F
930 968 0.247695 GCCAGTCTTTGTTATCGCGC 60.248 55.0 0.0 0.0 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2670 0.179094 CCATGTCGGCGTAAAGGCTA 60.179 55.0 6.85 0.00 44.22 3.93 R
2688 3208 1.106944 TAGGGACATCGAGATGCGCA 61.107 55.0 14.96 14.96 42.39 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.903570 TTTTCACACAGTATACACAAAAGTTG 57.096 30.769 5.50 0.00 0.00 3.16
53 54 6.055231 TCACACAGTATACACAAAAGTTGC 57.945 37.500 5.50 0.00 0.00 4.17
54 55 4.903585 CACACAGTATACACAAAAGTTGCG 59.096 41.667 5.50 0.00 0.00 4.85
55 56 3.906008 CACAGTATACACAAAAGTTGCGC 59.094 43.478 0.00 0.00 0.00 6.09
56 57 3.813166 ACAGTATACACAAAAGTTGCGCT 59.187 39.130 9.73 0.00 0.00 5.92
57 58 4.274950 ACAGTATACACAAAAGTTGCGCTT 59.725 37.500 9.73 0.00 39.52 4.68
114 115 8.784043 AGTGTAATATCGCAAAAAGAAAGAAGT 58.216 29.630 0.00 0.00 0.00 3.01
115 116 9.394477 GTGTAATATCGCAAAAAGAAAGAAGTT 57.606 29.630 0.00 0.00 0.00 2.66
116 117 9.959749 TGTAATATCGCAAAAAGAAAGAAGTTT 57.040 25.926 0.00 0.00 0.00 2.66
122 123 9.665264 ATCGCAAAAAGAAAGAAGTTTACTAAG 57.335 29.630 0.00 0.00 0.00 2.18
123 124 8.885722 TCGCAAAAAGAAAGAAGTTTACTAAGA 58.114 29.630 0.00 0.00 0.00 2.10
124 125 9.498307 CGCAAAAAGAAAGAAGTTTACTAAGAA 57.502 29.630 0.00 0.00 0.00 2.52
153 154 8.480643 AAGAATTAGTGGCATAGATATTACGC 57.519 34.615 0.00 0.00 0.00 4.42
154 155 7.841956 AGAATTAGTGGCATAGATATTACGCT 58.158 34.615 0.00 0.00 0.00 5.07
155 156 8.314751 AGAATTAGTGGCATAGATATTACGCTT 58.685 33.333 0.00 0.00 0.00 4.68
156 157 9.582431 GAATTAGTGGCATAGATATTACGCTTA 57.418 33.333 0.00 0.00 0.00 3.09
157 158 9.938280 AATTAGTGGCATAGATATTACGCTTAA 57.062 29.630 0.00 0.00 0.00 1.85
158 159 9.938280 ATTAGTGGCATAGATATTACGCTTAAA 57.062 29.630 0.00 0.00 0.00 1.52
159 160 7.891183 AGTGGCATAGATATTACGCTTAAAG 57.109 36.000 0.00 0.00 0.00 1.85
160 161 7.667557 AGTGGCATAGATATTACGCTTAAAGA 58.332 34.615 0.00 0.00 0.00 2.52
161 162 8.148351 AGTGGCATAGATATTACGCTTAAAGAA 58.852 33.333 0.00 0.00 0.00 2.52
162 163 8.436200 GTGGCATAGATATTACGCTTAAAGAAG 58.564 37.037 0.00 0.00 35.60 2.85
163 164 8.364894 TGGCATAGATATTACGCTTAAAGAAGA 58.635 33.333 0.00 0.00 34.25 2.87
164 165 9.204570 GGCATAGATATTACGCTTAAAGAAGAA 57.795 33.333 0.00 0.00 34.25 2.52
212 213 8.807948 TTTTCTAAGGGAGAATGAATTAGTGG 57.192 34.615 0.00 0.00 43.84 4.00
213 214 5.930135 TCTAAGGGAGAATGAATTAGTGGC 58.070 41.667 0.00 0.00 0.00 5.01
214 215 3.199880 AGGGAGAATGAATTAGTGGCG 57.800 47.619 0.00 0.00 0.00 5.69
215 216 2.505819 AGGGAGAATGAATTAGTGGCGT 59.494 45.455 0.00 0.00 0.00 5.68
216 217 3.709653 AGGGAGAATGAATTAGTGGCGTA 59.290 43.478 0.00 0.00 0.00 4.42
217 218 4.348168 AGGGAGAATGAATTAGTGGCGTAT 59.652 41.667 0.00 0.00 0.00 3.06
218 219 5.063880 GGGAGAATGAATTAGTGGCGTATT 58.936 41.667 0.00 0.00 0.00 1.89
219 220 5.049405 GGGAGAATGAATTAGTGGCGTATTG 60.049 44.000 0.00 0.00 0.00 1.90
220 221 5.758296 GGAGAATGAATTAGTGGCGTATTGA 59.242 40.000 0.00 0.00 0.00 2.57
221 222 6.292919 GGAGAATGAATTAGTGGCGTATTGAC 60.293 42.308 0.00 0.00 0.00 3.18
222 223 5.527582 AGAATGAATTAGTGGCGTATTGACC 59.472 40.000 0.00 0.00 0.00 4.02
223 224 4.481368 TGAATTAGTGGCGTATTGACCT 57.519 40.909 0.00 0.00 0.00 3.85
224 225 4.839121 TGAATTAGTGGCGTATTGACCTT 58.161 39.130 0.00 0.00 0.00 3.50
225 226 5.250200 TGAATTAGTGGCGTATTGACCTTT 58.750 37.500 0.00 0.00 0.00 3.11
226 227 5.708230 TGAATTAGTGGCGTATTGACCTTTT 59.292 36.000 0.00 0.00 0.00 2.27
227 228 6.879993 TGAATTAGTGGCGTATTGACCTTTTA 59.120 34.615 0.00 0.00 0.00 1.52
228 229 7.554835 TGAATTAGTGGCGTATTGACCTTTTAT 59.445 33.333 0.00 0.00 0.00 1.40
229 230 8.967664 AATTAGTGGCGTATTGACCTTTTATA 57.032 30.769 0.00 0.00 0.00 0.98
230 231 8.967664 ATTAGTGGCGTATTGACCTTTTATAA 57.032 30.769 0.00 0.00 0.00 0.98
231 232 8.967664 TTAGTGGCGTATTGACCTTTTATAAT 57.032 30.769 0.00 0.00 0.00 1.28
233 234 8.967664 AGTGGCGTATTGACCTTTTATAATAA 57.032 30.769 0.00 0.00 0.00 1.40
234 235 9.052759 AGTGGCGTATTGACCTTTTATAATAAG 57.947 33.333 0.00 0.00 0.00 1.73
235 236 8.287503 GTGGCGTATTGACCTTTTATAATAAGG 58.712 37.037 17.72 17.72 46.17 2.69
236 237 8.212312 TGGCGTATTGACCTTTTATAATAAGGA 58.788 33.333 22.59 9.40 44.01 3.36
237 238 9.059260 GGCGTATTGACCTTTTATAATAAGGAA 57.941 33.333 22.59 13.43 44.01 3.36
268 269 3.651562 AAACTTCGACACAACTTCACG 57.348 42.857 0.00 0.00 0.00 4.35
269 270 0.928229 ACTTCGACACAACTTCACGC 59.072 50.000 0.00 0.00 0.00 5.34
270 271 1.209128 CTTCGACACAACTTCACGCT 58.791 50.000 0.00 0.00 0.00 5.07
271 272 2.223641 ACTTCGACACAACTTCACGCTA 60.224 45.455 0.00 0.00 0.00 4.26
272 273 2.495409 TCGACACAACTTCACGCTAA 57.505 45.000 0.00 0.00 0.00 3.09
273 274 3.021269 TCGACACAACTTCACGCTAAT 57.979 42.857 0.00 0.00 0.00 1.73
274 275 4.163458 TCGACACAACTTCACGCTAATA 57.837 40.909 0.00 0.00 0.00 0.98
275 276 4.548494 TCGACACAACTTCACGCTAATAA 58.452 39.130 0.00 0.00 0.00 1.40
276 277 5.165676 TCGACACAACTTCACGCTAATAAT 58.834 37.500 0.00 0.00 0.00 1.28
277 278 5.636121 TCGACACAACTTCACGCTAATAATT 59.364 36.000 0.00 0.00 0.00 1.40
278 279 5.728049 CGACACAACTTCACGCTAATAATTG 59.272 40.000 0.00 0.00 0.00 2.32
279 280 5.390613 ACACAACTTCACGCTAATAATTGC 58.609 37.500 0.00 0.00 0.00 3.56
280 281 5.049060 ACACAACTTCACGCTAATAATTGCA 60.049 36.000 0.00 0.00 0.00 4.08
281 282 5.283717 CACAACTTCACGCTAATAATTGCAC 59.716 40.000 0.00 0.00 0.00 4.57
282 283 5.181245 ACAACTTCACGCTAATAATTGCACT 59.819 36.000 0.00 0.00 0.00 4.40
283 284 5.880054 ACTTCACGCTAATAATTGCACTT 57.120 34.783 0.00 0.00 0.00 3.16
284 285 6.254281 ACTTCACGCTAATAATTGCACTTT 57.746 33.333 0.00 0.00 0.00 2.66
285 286 6.677913 ACTTCACGCTAATAATTGCACTTTT 58.322 32.000 0.00 0.00 0.00 2.27
286 287 7.145323 ACTTCACGCTAATAATTGCACTTTTT 58.855 30.769 0.00 0.00 0.00 1.94
391 392 8.880878 ATGTATACATTTATACTCACGCAACA 57.119 30.769 12.75 0.00 40.56 3.33
392 393 8.880878 TGTATACATTTATACTCACGCAACAT 57.119 30.769 0.08 0.00 40.56 2.71
393 394 9.968870 TGTATACATTTATACTCACGCAACATA 57.031 29.630 0.08 0.00 40.56 2.29
395 396 6.598753 ACATTTATACTCACGCAACATACC 57.401 37.500 0.00 0.00 0.00 2.73
396 397 5.526111 ACATTTATACTCACGCAACATACCC 59.474 40.000 0.00 0.00 0.00 3.69
397 398 4.739587 TTATACTCACGCAACATACCCA 57.260 40.909 0.00 0.00 0.00 4.51
398 399 3.838244 ATACTCACGCAACATACCCAT 57.162 42.857 0.00 0.00 0.00 4.00
399 400 4.948341 ATACTCACGCAACATACCCATA 57.052 40.909 0.00 0.00 0.00 2.74
400 401 3.620427 ACTCACGCAACATACCCATAA 57.380 42.857 0.00 0.00 0.00 1.90
401 402 3.945346 ACTCACGCAACATACCCATAAA 58.055 40.909 0.00 0.00 0.00 1.40
402 403 4.328536 ACTCACGCAACATACCCATAAAA 58.671 39.130 0.00 0.00 0.00 1.52
403 404 4.762765 ACTCACGCAACATACCCATAAAAA 59.237 37.500 0.00 0.00 0.00 1.94
404 405 5.106317 ACTCACGCAACATACCCATAAAAAG 60.106 40.000 0.00 0.00 0.00 2.27
405 406 3.857093 CACGCAACATACCCATAAAAAGC 59.143 43.478 0.00 0.00 0.00 3.51
406 407 3.119280 ACGCAACATACCCATAAAAAGCC 60.119 43.478 0.00 0.00 0.00 4.35
407 408 3.443976 GCAACATACCCATAAAAAGCCG 58.556 45.455 0.00 0.00 0.00 5.52
408 409 3.129638 GCAACATACCCATAAAAAGCCGA 59.870 43.478 0.00 0.00 0.00 5.54
409 410 4.202111 GCAACATACCCATAAAAAGCCGAT 60.202 41.667 0.00 0.00 0.00 4.18
410 411 5.681179 GCAACATACCCATAAAAAGCCGATT 60.681 40.000 0.00 0.00 0.00 3.34
411 412 6.337356 CAACATACCCATAAAAAGCCGATTT 58.663 36.000 0.00 0.00 0.00 2.17
412 413 7.484975 CAACATACCCATAAAAAGCCGATTTA 58.515 34.615 0.00 0.00 0.00 1.40
413 414 7.648039 ACATACCCATAAAAAGCCGATTTAA 57.352 32.000 0.00 0.00 0.00 1.52
414 415 8.068892 ACATACCCATAAAAAGCCGATTTAAA 57.931 30.769 0.00 0.00 0.00 1.52
415 416 8.532819 ACATACCCATAAAAAGCCGATTTAAAA 58.467 29.630 0.00 0.00 0.00 1.52
416 417 9.372369 CATACCCATAAAAAGCCGATTTAAAAA 57.628 29.630 0.00 0.00 0.00 1.94
419 420 9.594478 ACCCATAAAAAGCCGATTTAAAAATAG 57.406 29.630 0.00 0.00 0.00 1.73
420 421 9.810545 CCCATAAAAAGCCGATTTAAAAATAGA 57.189 29.630 0.00 0.00 0.00 1.98
444 445 2.378445 AAAACACACACAAACAGCCC 57.622 45.000 0.00 0.00 0.00 5.19
445 446 1.261480 AAACACACACAAACAGCCCA 58.739 45.000 0.00 0.00 0.00 5.36
446 447 1.261480 AACACACACAAACAGCCCAA 58.739 45.000 0.00 0.00 0.00 4.12
447 448 1.484038 ACACACACAAACAGCCCAAT 58.516 45.000 0.00 0.00 0.00 3.16
448 449 2.660572 ACACACACAAACAGCCCAATA 58.339 42.857 0.00 0.00 0.00 1.90
449 450 3.027412 ACACACACAAACAGCCCAATAA 58.973 40.909 0.00 0.00 0.00 1.40
450 451 3.068024 ACACACACAAACAGCCCAATAAG 59.932 43.478 0.00 0.00 0.00 1.73
451 452 3.317711 CACACACAAACAGCCCAATAAGA 59.682 43.478 0.00 0.00 0.00 2.10
452 453 3.957497 ACACACAAACAGCCCAATAAGAA 59.043 39.130 0.00 0.00 0.00 2.52
453 454 4.404073 ACACACAAACAGCCCAATAAGAAA 59.596 37.500 0.00 0.00 0.00 2.52
454 455 5.105146 ACACACAAACAGCCCAATAAGAAAA 60.105 36.000 0.00 0.00 0.00 2.29
455 456 5.234116 CACACAAACAGCCCAATAAGAAAAC 59.766 40.000 0.00 0.00 0.00 2.43
456 457 4.444056 CACAAACAGCCCAATAAGAAAACG 59.556 41.667 0.00 0.00 0.00 3.60
457 458 4.098807 ACAAACAGCCCAATAAGAAAACGT 59.901 37.500 0.00 0.00 0.00 3.99
458 459 3.915437 ACAGCCCAATAAGAAAACGTG 57.085 42.857 0.00 0.00 0.00 4.49
459 460 3.219281 ACAGCCCAATAAGAAAACGTGT 58.781 40.909 0.00 0.00 0.00 4.49
460 461 4.391155 ACAGCCCAATAAGAAAACGTGTA 58.609 39.130 0.00 0.00 0.00 2.90
461 462 4.822896 ACAGCCCAATAAGAAAACGTGTAA 59.177 37.500 0.00 0.00 0.00 2.41
462 463 5.151389 CAGCCCAATAAGAAAACGTGTAAC 58.849 41.667 0.00 0.00 0.00 2.50
463 464 4.822896 AGCCCAATAAGAAAACGTGTAACA 59.177 37.500 0.00 0.00 35.74 2.41
464 465 5.048991 AGCCCAATAAGAAAACGTGTAACAG 60.049 40.000 0.00 0.00 35.74 3.16
465 466 5.151389 CCCAATAAGAAAACGTGTAACAGC 58.849 41.667 0.00 0.00 35.74 4.40
466 467 5.151389 CCAATAAGAAAACGTGTAACAGCC 58.849 41.667 0.00 0.00 35.74 4.85
467 468 4.657075 ATAAGAAAACGTGTAACAGCCG 57.343 40.909 0.00 0.00 35.74 5.52
468 469 1.944032 AGAAAACGTGTAACAGCCGT 58.056 45.000 0.00 0.00 35.74 5.68
469 470 1.862827 AGAAAACGTGTAACAGCCGTC 59.137 47.619 0.00 0.00 35.74 4.79
470 471 1.593933 GAAAACGTGTAACAGCCGTCA 59.406 47.619 0.00 0.00 35.74 4.35
471 472 1.214367 AAACGTGTAACAGCCGTCAG 58.786 50.000 0.00 0.00 35.74 3.51
472 473 1.219522 AACGTGTAACAGCCGTCAGC 61.220 55.000 0.00 0.00 44.25 4.26
473 474 2.380410 CGTGTAACAGCCGTCAGCC 61.380 63.158 0.00 0.00 45.47 4.85
474 475 1.301401 GTGTAACAGCCGTCAGCCA 60.301 57.895 0.00 0.00 45.47 4.75
475 476 0.882927 GTGTAACAGCCGTCAGCCAA 60.883 55.000 0.00 0.00 45.47 4.52
476 477 0.602638 TGTAACAGCCGTCAGCCAAG 60.603 55.000 0.00 0.00 45.47 3.61
477 478 0.320421 GTAACAGCCGTCAGCCAAGA 60.320 55.000 0.00 0.00 45.47 3.02
478 479 0.394938 TAACAGCCGTCAGCCAAGAA 59.605 50.000 0.00 0.00 45.47 2.52
479 480 0.250901 AACAGCCGTCAGCCAAGAAT 60.251 50.000 0.00 0.00 45.47 2.40
480 481 0.674895 ACAGCCGTCAGCCAAGAATC 60.675 55.000 0.00 0.00 45.47 2.52
481 482 1.448540 AGCCGTCAGCCAAGAATCG 60.449 57.895 0.00 0.00 45.47 3.34
482 483 1.447838 GCCGTCAGCCAAGAATCGA 60.448 57.895 0.00 0.00 34.35 3.59
483 484 1.696832 GCCGTCAGCCAAGAATCGAC 61.697 60.000 0.00 0.00 34.35 4.20
484 485 0.108615 CCGTCAGCCAAGAATCGACT 60.109 55.000 0.00 0.00 0.00 4.18
485 486 1.134367 CCGTCAGCCAAGAATCGACTA 59.866 52.381 0.00 0.00 0.00 2.59
486 487 2.416836 CCGTCAGCCAAGAATCGACTAA 60.417 50.000 0.00 0.00 0.00 2.24
487 488 2.854777 CGTCAGCCAAGAATCGACTAAG 59.145 50.000 0.00 0.00 0.00 2.18
488 489 3.673594 CGTCAGCCAAGAATCGACTAAGT 60.674 47.826 0.00 0.00 0.00 2.24
489 490 3.860536 GTCAGCCAAGAATCGACTAAGTC 59.139 47.826 0.00 0.00 0.00 3.01
490 491 3.509967 TCAGCCAAGAATCGACTAAGTCA 59.490 43.478 0.00 0.00 32.09 3.41
491 492 4.021456 TCAGCCAAGAATCGACTAAGTCAA 60.021 41.667 0.00 0.00 32.09 3.18
492 493 4.690748 CAGCCAAGAATCGACTAAGTCAAA 59.309 41.667 0.00 0.00 32.09 2.69
493 494 5.179368 CAGCCAAGAATCGACTAAGTCAAAA 59.821 40.000 0.00 0.00 32.09 2.44
494 495 5.179555 AGCCAAGAATCGACTAAGTCAAAAC 59.820 40.000 0.00 0.00 32.09 2.43
495 496 5.179555 GCCAAGAATCGACTAAGTCAAAACT 59.820 40.000 0.00 0.00 37.32 2.66
496 497 6.593978 CCAAGAATCGACTAAGTCAAAACTG 58.406 40.000 0.00 0.00 35.36 3.16
497 498 6.347725 CCAAGAATCGACTAAGTCAAAACTGG 60.348 42.308 0.00 0.00 35.36 4.00
498 499 5.855045 AGAATCGACTAAGTCAAAACTGGT 58.145 37.500 0.00 0.00 35.36 4.00
499 500 5.927115 AGAATCGACTAAGTCAAAACTGGTC 59.073 40.000 0.00 0.00 35.36 4.02
500 501 4.659111 TCGACTAAGTCAAAACTGGTCA 57.341 40.909 0.00 0.00 38.18 4.02
501 502 4.617959 TCGACTAAGTCAAAACTGGTCAG 58.382 43.478 0.00 0.00 38.18 3.51
502 503 4.098960 TCGACTAAGTCAAAACTGGTCAGT 59.901 41.667 0.00 0.00 38.18 3.41
503 504 4.444720 CGACTAAGTCAAAACTGGTCAGTC 59.555 45.833 3.93 0.00 38.18 3.51
504 505 5.353394 ACTAAGTCAAAACTGGTCAGTCA 57.647 39.130 3.93 0.00 41.58 3.41
505 506 5.741011 ACTAAGTCAAAACTGGTCAGTCAA 58.259 37.500 3.93 0.00 41.58 3.18
506 507 6.177610 ACTAAGTCAAAACTGGTCAGTCAAA 58.822 36.000 3.93 0.00 41.58 2.69
507 508 6.828785 ACTAAGTCAAAACTGGTCAGTCAAAT 59.171 34.615 3.93 0.00 41.58 2.32
508 509 5.757850 AGTCAAAACTGGTCAGTCAAATC 57.242 39.130 3.93 0.00 41.58 2.17
509 510 4.580580 AGTCAAAACTGGTCAGTCAAATCC 59.419 41.667 3.93 0.00 41.58 3.01
510 511 4.580580 GTCAAAACTGGTCAGTCAAATCCT 59.419 41.667 3.93 0.00 41.58 3.24
511 512 5.067805 GTCAAAACTGGTCAGTCAAATCCTT 59.932 40.000 3.93 0.00 41.58 3.36
512 513 5.656416 TCAAAACTGGTCAGTCAAATCCTTT 59.344 36.000 3.93 0.00 41.58 3.11
513 514 5.520376 AAACTGGTCAGTCAAATCCTTTG 57.480 39.130 3.93 0.00 41.58 2.77
514 515 3.490348 ACTGGTCAGTCAAATCCTTTGG 58.510 45.455 0.00 0.00 40.98 3.28
515 516 2.821969 CTGGTCAGTCAAATCCTTTGGG 59.178 50.000 0.19 0.00 40.98 4.12
516 517 1.546029 GGTCAGTCAAATCCTTTGGGC 59.454 52.381 0.19 0.00 40.98 5.36
517 518 1.546029 GTCAGTCAAATCCTTTGGGCC 59.454 52.381 0.00 0.00 40.98 5.80
518 519 0.897621 CAGTCAAATCCTTTGGGCCC 59.102 55.000 17.59 17.59 40.98 5.80
519 520 0.486879 AGTCAAATCCTTTGGGCCCA 59.513 50.000 24.45 24.45 40.98 5.36
520 521 1.132881 AGTCAAATCCTTTGGGCCCAA 60.133 47.619 34.07 34.07 40.98 4.12
521 522 1.696884 GTCAAATCCTTTGGGCCCAAA 59.303 47.619 40.62 40.62 42.77 3.28
522 523 2.105649 GTCAAATCCTTTGGGCCCAAAA 59.894 45.455 41.64 31.82 44.07 2.44
523 524 2.105649 TCAAATCCTTTGGGCCCAAAAC 59.894 45.455 41.64 10.29 44.07 2.43
524 525 2.106338 CAAATCCTTTGGGCCCAAAACT 59.894 45.455 41.64 28.60 44.07 2.66
525 526 2.116869 ATCCTTTGGGCCCAAAACTT 57.883 45.000 41.64 28.42 44.07 2.66
526 527 1.127343 TCCTTTGGGCCCAAAACTTG 58.873 50.000 41.64 31.42 44.07 3.16
527 528 1.127343 CCTTTGGGCCCAAAACTTGA 58.873 50.000 41.64 24.71 44.07 3.02
528 529 1.202639 CCTTTGGGCCCAAAACTTGAC 60.203 52.381 41.64 6.38 44.07 3.18
529 530 1.484240 CTTTGGGCCCAAAACTTGACA 59.516 47.619 41.64 23.33 44.07 3.58
530 531 1.118838 TTGGGCCCAAAACTTGACAG 58.881 50.000 35.47 0.00 32.44 3.51
531 532 1.367471 GGGCCCAAAACTTGACAGC 59.633 57.895 19.95 0.00 0.00 4.40
532 533 1.398958 GGGCCCAAAACTTGACAGCA 61.399 55.000 19.95 0.00 0.00 4.41
533 534 0.249447 GGCCCAAAACTTGACAGCAC 60.249 55.000 0.00 0.00 0.00 4.40
534 535 0.459489 GCCCAAAACTTGACAGCACA 59.541 50.000 0.00 0.00 0.00 4.57
535 536 1.536709 GCCCAAAACTTGACAGCACAG 60.537 52.381 0.00 0.00 0.00 3.66
536 537 2.023673 CCCAAAACTTGACAGCACAGA 58.976 47.619 0.00 0.00 0.00 3.41
537 538 2.223572 CCCAAAACTTGACAGCACAGAC 60.224 50.000 0.00 0.00 0.00 3.51
538 539 2.423185 CCAAAACTTGACAGCACAGACA 59.577 45.455 0.00 0.00 0.00 3.41
539 540 3.119531 CCAAAACTTGACAGCACAGACAA 60.120 43.478 0.00 0.00 0.00 3.18
540 541 3.764885 AAACTTGACAGCACAGACAAC 57.235 42.857 0.00 0.00 0.00 3.32
541 542 2.401583 ACTTGACAGCACAGACAACA 57.598 45.000 0.00 0.00 0.00 3.33
542 543 2.283298 ACTTGACAGCACAGACAACAG 58.717 47.619 0.00 0.00 0.00 3.16
543 544 1.600957 CTTGACAGCACAGACAACAGG 59.399 52.381 0.00 0.00 0.00 4.00
544 545 0.829990 TGACAGCACAGACAACAGGA 59.170 50.000 0.00 0.00 0.00 3.86
545 546 1.209261 TGACAGCACAGACAACAGGAA 59.791 47.619 0.00 0.00 0.00 3.36
546 547 2.288666 GACAGCACAGACAACAGGAAA 58.711 47.619 0.00 0.00 0.00 3.13
547 548 2.682856 GACAGCACAGACAACAGGAAAA 59.317 45.455 0.00 0.00 0.00 2.29
548 549 3.088532 ACAGCACAGACAACAGGAAAAA 58.911 40.909 0.00 0.00 0.00 1.94
572 573 7.776933 AAAAAGGCAGCTAAAAAGAAAGAAG 57.223 32.000 0.00 0.00 0.00 2.85
573 574 5.459536 AAGGCAGCTAAAAAGAAAGAAGG 57.540 39.130 0.00 0.00 0.00 3.46
574 575 4.729868 AGGCAGCTAAAAAGAAAGAAGGA 58.270 39.130 0.00 0.00 0.00 3.36
575 576 5.140454 AGGCAGCTAAAAAGAAAGAAGGAA 58.860 37.500 0.00 0.00 0.00 3.36
576 577 5.598417 AGGCAGCTAAAAAGAAAGAAGGAAA 59.402 36.000 0.00 0.00 0.00 3.13
577 578 6.098266 AGGCAGCTAAAAAGAAAGAAGGAAAA 59.902 34.615 0.00 0.00 0.00 2.29
578 579 6.761242 GGCAGCTAAAAAGAAAGAAGGAAAAA 59.239 34.615 0.00 0.00 0.00 1.94
608 609 0.454600 CGCATCTTGGAGCAGCAATT 59.545 50.000 0.00 0.00 0.00 2.32
611 612 3.243301 CGCATCTTGGAGCAGCAATTAAT 60.243 43.478 0.00 0.00 0.00 1.40
619 620 6.543430 TGGAGCAGCAATTAATGGTAAAAT 57.457 33.333 0.00 0.00 37.77 1.82
621 622 7.488322 TGGAGCAGCAATTAATGGTAAAATAC 58.512 34.615 0.00 0.00 37.77 1.89
624 625 9.185192 GAGCAGCAATTAATGGTAAAATACATC 57.815 33.333 0.00 0.00 37.77 3.06
628 629 8.067784 AGCAATTAATGGTAAAATACATCGACG 58.932 33.333 0.00 0.00 38.18 5.12
631 632 9.925268 AATTAATGGTAAAATACATCGACGAAC 57.075 29.630 0.00 0.00 0.00 3.95
632 633 5.630896 ATGGTAAAATACATCGACGAACG 57.369 39.130 0.00 0.00 44.09 3.95
643 644 1.055338 CGACGAACGACTAACCCAAC 58.945 55.000 0.14 0.00 45.77 3.77
645 646 2.323059 GACGAACGACTAACCCAACTC 58.677 52.381 0.14 0.00 0.00 3.01
650 651 4.383948 CGAACGACTAACCCAACTCTAAAC 59.616 45.833 0.00 0.00 0.00 2.01
685 690 8.368668 ACTTAGGTATAGCTAAAGTGCTTATGG 58.631 37.037 21.44 10.75 43.74 2.74
686 691 6.115448 AGGTATAGCTAAAGTGCTTATGGG 57.885 41.667 1.70 0.00 43.74 4.00
733 738 9.693739 GGGGTCCAAATTAAAATGGATATTTTT 57.306 29.630 13.80 0.00 46.78 1.94
775 781 4.460382 AGCACTGTATAGCTGCAACAATTT 59.540 37.500 1.02 0.00 40.13 1.82
809 826 2.029918 GGTCTCCAAGCAACAATGAACC 60.030 50.000 0.00 0.00 0.00 3.62
899 916 5.529581 CCGCCAAATGGGATTAATTAGTT 57.470 39.130 0.90 0.00 40.01 2.24
900 917 5.912892 CCGCCAAATGGGATTAATTAGTTT 58.087 37.500 0.90 0.00 40.01 2.66
901 918 5.752955 CCGCCAAATGGGATTAATTAGTTTG 59.247 40.000 0.90 0.43 40.01 2.93
902 919 5.752955 CGCCAAATGGGATTAATTAGTTTGG 59.247 40.000 20.11 20.11 44.16 3.28
903 920 6.629291 CGCCAAATGGGATTAATTAGTTTGGT 60.629 38.462 22.55 0.00 43.57 3.67
930 968 0.247695 GCCAGTCTTTGTTATCGCGC 60.248 55.000 0.00 0.00 0.00 6.86
951 991 1.001641 ATGCTGCCAACTCACCTCC 60.002 57.895 0.00 0.00 0.00 4.30
1070 1110 2.294791 CAGCCCAAATTAAACACCGTGA 59.705 45.455 5.28 0.00 0.00 4.35
1073 1113 3.753842 CCCAAATTAAACACCGTGATCG 58.246 45.455 5.28 0.00 0.00 3.69
1089 1129 4.444024 CGTTGGTCCATGCGTGCG 62.444 66.667 0.00 0.00 0.00 5.34
1107 1153 0.317519 CGGCCGTGAAGGTTTGTTTC 60.318 55.000 19.50 0.00 43.70 2.78
1127 1173 2.050269 ACCTGGAGTGACGAGTTGG 58.950 57.895 0.00 0.00 0.00 3.77
1128 1174 0.759436 ACCTGGAGTGACGAGTTGGT 60.759 55.000 0.00 0.00 0.00 3.67
1131 1177 0.828022 TGGAGTGACGAGTTGGTGTT 59.172 50.000 0.00 0.00 0.00 3.32
1164 1282 1.080434 GGAGCGTGACGAGCTTCTT 60.080 57.895 10.10 0.00 46.13 2.52
1178 1296 1.336887 GCTTCTTACCGTGTCAGCTCA 60.337 52.381 0.00 0.00 0.00 4.26
1192 1310 2.022129 GCTCACGTTCGTGGTGGAG 61.022 63.158 22.02 14.18 36.82 3.86
1214 1332 2.281761 CGTGCAGGGAACAGCCTT 60.282 61.111 0.00 0.00 43.15 4.35
1463 1625 1.139058 AGCAATGCTACTAACCTCCCG 59.861 52.381 5.69 0.00 36.99 5.14
1529 1691 1.738830 GTGTGTTGCATGGCATGGC 60.739 57.895 27.48 19.51 38.76 4.40
1530 1692 2.507547 GTGTTGCATGGCATGGCG 60.508 61.111 27.48 4.20 38.76 5.69
1568 1745 2.723322 TCCATCATGCAGGAGGAAAG 57.277 50.000 15.44 0.00 0.00 2.62
1588 1765 3.881019 TTCCCGGGACTCGCTGAGT 62.881 63.158 26.87 10.33 46.42 3.41
1674 1851 2.123077 CCAGGCTCCCTCCTCGAT 60.123 66.667 0.00 0.00 33.25 3.59
1828 2005 2.818274 CCGCCAACGTTAGCTCCC 60.818 66.667 16.47 0.00 37.70 4.30
1957 2463 3.118956 CCCCGCATGCCTTTAACAATTTA 60.119 43.478 13.15 0.00 0.00 1.40
2151 2670 2.114411 AACCCGTTCCGGCACATT 59.886 55.556 4.79 0.00 46.86 2.71
2277 2796 1.112113 GGACGGTGGAGATGCTAAGA 58.888 55.000 0.00 0.00 0.00 2.10
2424 2943 0.110486 ACGGTTTCTGCCAGTTCCAT 59.890 50.000 0.00 0.00 0.00 3.41
2547 3066 0.389817 CGAGCAAGACACCATCGGAA 60.390 55.000 0.00 0.00 0.00 4.30
2648 3168 3.021695 CACAATCCAGCATTCCAGATGT 58.978 45.455 0.00 0.00 0.00 3.06
2654 3174 7.093201 ACAATCCAGCATTCCAGATGTAAAAAT 60.093 33.333 0.00 0.00 0.00 1.82
2657 3177 8.537728 TCCAGCATTCCAGATGTAAAAATAAT 57.462 30.769 0.00 0.00 0.00 1.28
2688 3208 3.039526 CTCCTCCTCCCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
2697 3217 4.247380 CCCCTCCCTGCGCATCTC 62.247 72.222 12.24 0.00 0.00 2.75
2700 3220 2.733301 CTCCCTGCGCATCTCGAT 59.267 61.111 12.24 0.00 41.67 3.59
2856 3376 4.532834 ACACTTAAAGAGAAGGTTTGCCA 58.467 39.130 0.00 0.00 37.19 4.92
2889 3409 6.635166 GTGAAACTCAAACTAGCTAGTAGC 57.365 41.667 26.29 14.62 42.84 3.58
2934 3454 2.476241 CCGAAGTACGTACCAAAACCAC 59.524 50.000 21.80 0.00 40.78 4.16
3060 3582 2.867456 AATCCGCTAAAACGTGAACG 57.133 45.000 0.40 0.40 46.33 3.95
3225 3751 8.421002 TCAACATCGATATTCTTTGATAGACCA 58.579 33.333 0.00 0.00 30.90 4.02
3512 4299 9.699410 AGAAAATGTATGATAAAAGATCCCACA 57.301 29.630 0.00 0.00 0.00 4.17
3541 4328 5.951148 TCAAAGTGCTTGGAATCATTGGATA 59.049 36.000 0.00 0.00 35.56 2.59
3544 4331 5.513233 AGTGCTTGGAATCATTGGATAGTT 58.487 37.500 0.00 0.00 32.09 2.24
3567 4354 5.803552 TCTTGGACATCAACATACATGTGA 58.196 37.500 9.11 0.00 41.61 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.515020 CAACTTTTGTGTATACTGTGTGAAAAT 57.485 29.630 4.17 0.00 0.00 1.82
27 28 7.486551 GCAACTTTTGTGTATACTGTGTGAAAA 59.513 33.333 4.17 0.75 0.00 2.29
28 29 6.970043 GCAACTTTTGTGTATACTGTGTGAAA 59.030 34.615 4.17 0.00 0.00 2.69
29 30 6.491394 GCAACTTTTGTGTATACTGTGTGAA 58.509 36.000 4.17 0.00 0.00 3.18
30 31 5.277106 CGCAACTTTTGTGTATACTGTGTGA 60.277 40.000 4.17 0.00 36.45 3.58
31 32 4.903585 CGCAACTTTTGTGTATACTGTGTG 59.096 41.667 4.17 0.00 36.45 3.82
32 33 4.553938 GCGCAACTTTTGTGTATACTGTGT 60.554 41.667 0.30 0.00 42.92 3.72
33 34 3.906008 GCGCAACTTTTGTGTATACTGTG 59.094 43.478 0.30 0.00 42.92 3.66
34 35 3.813166 AGCGCAACTTTTGTGTATACTGT 59.187 39.130 11.47 0.00 42.92 3.55
35 36 4.404507 AGCGCAACTTTTGTGTATACTG 57.595 40.909 11.47 0.00 42.92 2.74
36 37 5.432885 AAAGCGCAACTTTTGTGTATACT 57.567 34.783 11.47 0.00 46.73 2.12
88 89 8.784043 ACTTCTTTCTTTTTGCGATATTACACT 58.216 29.630 0.00 0.00 0.00 3.55
89 90 8.950403 ACTTCTTTCTTTTTGCGATATTACAC 57.050 30.769 0.00 0.00 0.00 2.90
90 91 9.959749 AAACTTCTTTCTTTTTGCGATATTACA 57.040 25.926 0.00 0.00 0.00 2.41
96 97 9.665264 CTTAGTAAACTTCTTTCTTTTTGCGAT 57.335 29.630 0.00 0.00 0.00 4.58
97 98 8.885722 TCTTAGTAAACTTCTTTCTTTTTGCGA 58.114 29.630 0.00 0.00 0.00 5.10
98 99 9.498307 TTCTTAGTAAACTTCTTTCTTTTTGCG 57.502 29.630 0.00 0.00 0.00 4.85
127 128 8.936864 GCGTAATATCTATGCCACTAATTCTTT 58.063 33.333 0.00 0.00 0.00 2.52
128 129 8.314751 AGCGTAATATCTATGCCACTAATTCTT 58.685 33.333 5.85 0.00 0.00 2.52
129 130 7.841956 AGCGTAATATCTATGCCACTAATTCT 58.158 34.615 5.85 0.00 0.00 2.40
130 131 8.480643 AAGCGTAATATCTATGCCACTAATTC 57.519 34.615 5.85 0.00 0.00 2.17
131 132 9.938280 TTAAGCGTAATATCTATGCCACTAATT 57.062 29.630 0.00 0.00 0.00 1.40
132 133 9.938280 TTTAAGCGTAATATCTATGCCACTAAT 57.062 29.630 0.00 0.00 0.00 1.73
133 134 9.419297 CTTTAAGCGTAATATCTATGCCACTAA 57.581 33.333 0.00 1.83 0.00 2.24
134 135 8.799367 TCTTTAAGCGTAATATCTATGCCACTA 58.201 33.333 0.00 0.00 0.00 2.74
135 136 7.667557 TCTTTAAGCGTAATATCTATGCCACT 58.332 34.615 0.00 0.00 0.00 4.00
136 137 7.884816 TCTTTAAGCGTAATATCTATGCCAC 57.115 36.000 0.00 0.00 0.00 5.01
137 138 8.364894 TCTTCTTTAAGCGTAATATCTATGCCA 58.635 33.333 0.00 0.00 32.36 4.92
138 139 8.758633 TCTTCTTTAAGCGTAATATCTATGCC 57.241 34.615 0.00 0.00 32.36 4.40
190 191 5.453339 CGCCACTAATTCATTCTCCCTTAGA 60.453 44.000 0.00 0.00 0.00 2.10
191 192 4.752101 CGCCACTAATTCATTCTCCCTTAG 59.248 45.833 0.00 0.00 0.00 2.18
192 193 4.163458 ACGCCACTAATTCATTCTCCCTTA 59.837 41.667 0.00 0.00 0.00 2.69
193 194 3.054361 ACGCCACTAATTCATTCTCCCTT 60.054 43.478 0.00 0.00 0.00 3.95
194 195 2.505819 ACGCCACTAATTCATTCTCCCT 59.494 45.455 0.00 0.00 0.00 4.20
195 196 2.919228 ACGCCACTAATTCATTCTCCC 58.081 47.619 0.00 0.00 0.00 4.30
196 197 5.758296 TCAATACGCCACTAATTCATTCTCC 59.242 40.000 0.00 0.00 0.00 3.71
197 198 6.292919 GGTCAATACGCCACTAATTCATTCTC 60.293 42.308 0.00 0.00 0.00 2.87
198 199 5.527582 GGTCAATACGCCACTAATTCATTCT 59.472 40.000 0.00 0.00 0.00 2.40
199 200 5.527582 AGGTCAATACGCCACTAATTCATTC 59.472 40.000 0.00 0.00 0.00 2.67
200 201 5.437060 AGGTCAATACGCCACTAATTCATT 58.563 37.500 0.00 0.00 0.00 2.57
201 202 5.036117 AGGTCAATACGCCACTAATTCAT 57.964 39.130 0.00 0.00 0.00 2.57
202 203 4.481368 AGGTCAATACGCCACTAATTCA 57.519 40.909 0.00 0.00 0.00 2.57
203 204 5.813080 AAAGGTCAATACGCCACTAATTC 57.187 39.130 0.00 0.00 0.00 2.17
204 205 7.875327 ATAAAAGGTCAATACGCCACTAATT 57.125 32.000 0.00 0.00 0.00 1.40
205 206 8.967664 TTATAAAAGGTCAATACGCCACTAAT 57.032 30.769 0.00 0.00 0.00 1.73
206 207 8.967664 ATTATAAAAGGTCAATACGCCACTAA 57.032 30.769 0.00 0.00 0.00 2.24
208 209 8.967664 TTATTATAAAAGGTCAATACGCCACT 57.032 30.769 0.00 0.00 0.00 4.00
209 210 8.287503 CCTTATTATAAAAGGTCAATACGCCAC 58.712 37.037 13.84 0.00 38.98 5.01
210 211 8.212312 TCCTTATTATAAAAGGTCAATACGCCA 58.788 33.333 18.18 2.30 43.42 5.69
211 212 8.611654 TCCTTATTATAAAAGGTCAATACGCC 57.388 34.615 18.18 0.00 43.42 5.68
246 247 4.399978 CGTGAAGTTGTGTCGAAGTTTTT 58.600 39.130 0.00 0.00 0.00 1.94
247 248 3.726782 GCGTGAAGTTGTGTCGAAGTTTT 60.727 43.478 0.00 0.00 0.00 2.43
248 249 2.222953 GCGTGAAGTTGTGTCGAAGTTT 60.223 45.455 0.00 0.00 0.00 2.66
249 250 1.326548 GCGTGAAGTTGTGTCGAAGTT 59.673 47.619 0.00 0.00 0.00 2.66
250 251 0.928229 GCGTGAAGTTGTGTCGAAGT 59.072 50.000 0.00 0.00 0.00 3.01
251 252 1.209128 AGCGTGAAGTTGTGTCGAAG 58.791 50.000 0.00 0.00 0.00 3.79
252 253 2.495409 TAGCGTGAAGTTGTGTCGAA 57.505 45.000 0.00 0.00 0.00 3.71
253 254 2.495409 TTAGCGTGAAGTTGTGTCGA 57.505 45.000 0.00 0.00 0.00 4.20
254 255 4.896562 TTATTAGCGTGAAGTTGTGTCG 57.103 40.909 0.00 0.00 0.00 4.35
255 256 5.508224 GCAATTATTAGCGTGAAGTTGTGTC 59.492 40.000 0.00 0.00 0.00 3.67
256 257 5.049060 TGCAATTATTAGCGTGAAGTTGTGT 60.049 36.000 0.00 0.00 0.00 3.72
257 258 5.283717 GTGCAATTATTAGCGTGAAGTTGTG 59.716 40.000 0.00 0.00 0.00 3.33
258 259 5.181245 AGTGCAATTATTAGCGTGAAGTTGT 59.819 36.000 0.00 0.00 0.00 3.32
259 260 5.631026 AGTGCAATTATTAGCGTGAAGTTG 58.369 37.500 0.00 0.00 0.00 3.16
260 261 5.880054 AGTGCAATTATTAGCGTGAAGTT 57.120 34.783 0.00 0.00 0.00 2.66
261 262 5.880054 AAGTGCAATTATTAGCGTGAAGT 57.120 34.783 0.00 0.00 0.00 3.01
262 263 7.566858 AAAAAGTGCAATTATTAGCGTGAAG 57.433 32.000 0.00 0.00 0.00 3.02
365 366 9.968870 TGTTGCGTGAGTATAAATGTATACATA 57.031 29.630 18.56 4.80 43.17 2.29
366 367 8.880878 TGTTGCGTGAGTATAAATGTATACAT 57.119 30.769 12.75 12.75 43.17 2.29
367 368 8.880878 ATGTTGCGTGAGTATAAATGTATACA 57.119 30.769 14.30 8.27 43.17 2.29
369 370 9.414295 GGTATGTTGCGTGAGTATAAATGTATA 57.586 33.333 0.00 0.00 0.00 1.47
370 371 7.386848 GGGTATGTTGCGTGAGTATAAATGTAT 59.613 37.037 0.00 0.00 0.00 2.29
371 372 6.702723 GGGTATGTTGCGTGAGTATAAATGTA 59.297 38.462 0.00 0.00 0.00 2.29
372 373 5.526111 GGGTATGTTGCGTGAGTATAAATGT 59.474 40.000 0.00 0.00 0.00 2.71
373 374 5.525745 TGGGTATGTTGCGTGAGTATAAATG 59.474 40.000 0.00 0.00 0.00 2.32
374 375 5.676552 TGGGTATGTTGCGTGAGTATAAAT 58.323 37.500 0.00 0.00 0.00 1.40
375 376 5.087391 TGGGTATGTTGCGTGAGTATAAA 57.913 39.130 0.00 0.00 0.00 1.40
376 377 4.739587 TGGGTATGTTGCGTGAGTATAA 57.260 40.909 0.00 0.00 0.00 0.98
377 378 4.948341 ATGGGTATGTTGCGTGAGTATA 57.052 40.909 0.00 0.00 0.00 1.47
378 379 3.838244 ATGGGTATGTTGCGTGAGTAT 57.162 42.857 0.00 0.00 0.00 2.12
379 380 4.739587 TTATGGGTATGTTGCGTGAGTA 57.260 40.909 0.00 0.00 0.00 2.59
380 381 3.620427 TTATGGGTATGTTGCGTGAGT 57.380 42.857 0.00 0.00 0.00 3.41
381 382 4.955925 TTTTATGGGTATGTTGCGTGAG 57.044 40.909 0.00 0.00 0.00 3.51
382 383 4.380023 GCTTTTTATGGGTATGTTGCGTGA 60.380 41.667 0.00 0.00 0.00 4.35
383 384 3.857093 GCTTTTTATGGGTATGTTGCGTG 59.143 43.478 0.00 0.00 0.00 5.34
384 385 3.119280 GGCTTTTTATGGGTATGTTGCGT 60.119 43.478 0.00 0.00 0.00 5.24
385 386 3.443976 GGCTTTTTATGGGTATGTTGCG 58.556 45.455 0.00 0.00 0.00 4.85
386 387 3.129638 TCGGCTTTTTATGGGTATGTTGC 59.870 43.478 0.00 0.00 0.00 4.17
387 388 4.974368 TCGGCTTTTTATGGGTATGTTG 57.026 40.909 0.00 0.00 0.00 3.33
388 389 6.538945 AAATCGGCTTTTTATGGGTATGTT 57.461 33.333 0.00 0.00 0.00 2.71
389 390 7.648039 TTAAATCGGCTTTTTATGGGTATGT 57.352 32.000 0.00 0.00 0.00 2.29
390 391 8.934507 TTTTAAATCGGCTTTTTATGGGTATG 57.065 30.769 0.00 0.00 0.00 2.39
393 394 9.594478 CTATTTTTAAATCGGCTTTTTATGGGT 57.406 29.630 0.00 0.00 0.00 4.51
394 395 9.810545 TCTATTTTTAAATCGGCTTTTTATGGG 57.189 29.630 0.00 0.00 0.00 4.00
424 425 2.037772 TGGGCTGTTTGTGTGTGTTTTT 59.962 40.909 0.00 0.00 0.00 1.94
425 426 1.620819 TGGGCTGTTTGTGTGTGTTTT 59.379 42.857 0.00 0.00 0.00 2.43
426 427 1.261480 TGGGCTGTTTGTGTGTGTTT 58.739 45.000 0.00 0.00 0.00 2.83
427 428 1.261480 TTGGGCTGTTTGTGTGTGTT 58.739 45.000 0.00 0.00 0.00 3.32
428 429 1.484038 ATTGGGCTGTTTGTGTGTGT 58.516 45.000 0.00 0.00 0.00 3.72
429 430 3.317711 TCTTATTGGGCTGTTTGTGTGTG 59.682 43.478 0.00 0.00 0.00 3.82
430 431 3.561143 TCTTATTGGGCTGTTTGTGTGT 58.439 40.909 0.00 0.00 0.00 3.72
431 432 4.582701 TTCTTATTGGGCTGTTTGTGTG 57.417 40.909 0.00 0.00 0.00 3.82
432 433 5.356426 GTTTTCTTATTGGGCTGTTTGTGT 58.644 37.500 0.00 0.00 0.00 3.72
433 434 4.444056 CGTTTTCTTATTGGGCTGTTTGTG 59.556 41.667 0.00 0.00 0.00 3.33
434 435 4.098807 ACGTTTTCTTATTGGGCTGTTTGT 59.901 37.500 0.00 0.00 0.00 2.83
435 436 4.444056 CACGTTTTCTTATTGGGCTGTTTG 59.556 41.667 0.00 0.00 0.00 2.93
436 437 4.098807 ACACGTTTTCTTATTGGGCTGTTT 59.901 37.500 0.00 0.00 0.00 2.83
437 438 3.634910 ACACGTTTTCTTATTGGGCTGTT 59.365 39.130 0.00 0.00 0.00 3.16
438 439 3.219281 ACACGTTTTCTTATTGGGCTGT 58.781 40.909 0.00 0.00 0.00 4.40
439 440 3.915437 ACACGTTTTCTTATTGGGCTG 57.085 42.857 0.00 0.00 0.00 4.85
440 441 4.822896 TGTTACACGTTTTCTTATTGGGCT 59.177 37.500 0.00 0.00 0.00 5.19
441 442 5.110940 TGTTACACGTTTTCTTATTGGGC 57.889 39.130 0.00 0.00 0.00 5.36
442 443 5.151389 GCTGTTACACGTTTTCTTATTGGG 58.849 41.667 0.00 0.00 0.00 4.12
443 444 5.151389 GGCTGTTACACGTTTTCTTATTGG 58.849 41.667 0.00 0.00 0.00 3.16
444 445 4.843984 CGGCTGTTACACGTTTTCTTATTG 59.156 41.667 0.00 0.00 0.00 1.90
445 446 4.512571 ACGGCTGTTACACGTTTTCTTATT 59.487 37.500 0.00 0.00 37.61 1.40
446 447 4.060205 ACGGCTGTTACACGTTTTCTTAT 58.940 39.130 0.00 0.00 37.61 1.73
447 448 3.456280 ACGGCTGTTACACGTTTTCTTA 58.544 40.909 0.00 0.00 37.61 2.10
448 449 2.282407 ACGGCTGTTACACGTTTTCTT 58.718 42.857 0.00 0.00 37.61 2.52
449 450 1.862827 GACGGCTGTTACACGTTTTCT 59.137 47.619 0.00 0.00 41.40 2.52
450 451 1.593933 TGACGGCTGTTACACGTTTTC 59.406 47.619 0.00 0.00 41.40 2.29
451 452 1.595794 CTGACGGCTGTTACACGTTTT 59.404 47.619 0.00 0.00 41.40 2.43
452 453 1.214367 CTGACGGCTGTTACACGTTT 58.786 50.000 0.00 0.00 41.40 3.60
453 454 1.219522 GCTGACGGCTGTTACACGTT 61.220 55.000 0.00 0.00 41.40 3.99
454 455 1.663702 GCTGACGGCTGTTACACGT 60.664 57.895 0.00 0.71 44.35 4.49
455 456 2.380410 GGCTGACGGCTGTTACACG 61.380 63.158 6.16 0.00 41.46 4.49
456 457 0.882927 TTGGCTGACGGCTGTTACAC 60.883 55.000 6.16 0.00 41.46 2.90
457 458 0.602638 CTTGGCTGACGGCTGTTACA 60.603 55.000 6.16 0.00 41.46 2.41
458 459 0.320421 TCTTGGCTGACGGCTGTTAC 60.320 55.000 6.16 0.00 41.46 2.50
459 460 0.394938 TTCTTGGCTGACGGCTGTTA 59.605 50.000 6.16 0.00 41.46 2.41
460 461 0.250901 ATTCTTGGCTGACGGCTGTT 60.251 50.000 6.16 0.00 41.46 3.16
461 462 0.674895 GATTCTTGGCTGACGGCTGT 60.675 55.000 6.16 0.00 41.46 4.40
462 463 1.699656 CGATTCTTGGCTGACGGCTG 61.700 60.000 6.16 0.00 41.46 4.85
463 464 1.448540 CGATTCTTGGCTGACGGCT 60.449 57.895 6.16 0.00 41.46 5.52
464 465 1.447838 TCGATTCTTGGCTGACGGC 60.448 57.895 0.00 0.00 40.90 5.68
465 466 0.108615 AGTCGATTCTTGGCTGACGG 60.109 55.000 0.00 0.00 34.82 4.79
466 467 2.561733 TAGTCGATTCTTGGCTGACG 57.438 50.000 0.00 0.00 34.82 4.35
467 468 3.851098 ACTTAGTCGATTCTTGGCTGAC 58.149 45.455 0.00 0.00 0.00 3.51
468 469 3.509967 TGACTTAGTCGATTCTTGGCTGA 59.490 43.478 7.92 0.00 34.95 4.26
469 470 3.849911 TGACTTAGTCGATTCTTGGCTG 58.150 45.455 7.92 0.00 34.95 4.85
470 471 4.537135 TTGACTTAGTCGATTCTTGGCT 57.463 40.909 7.92 0.00 34.95 4.75
471 472 5.179555 AGTTTTGACTTAGTCGATTCTTGGC 59.820 40.000 7.92 0.00 34.95 4.52
472 473 6.347725 CCAGTTTTGACTTAGTCGATTCTTGG 60.348 42.308 7.92 7.40 34.95 3.61
473 474 6.202954 ACCAGTTTTGACTTAGTCGATTCTTG 59.797 38.462 7.92 6.13 34.95 3.02
474 475 6.289064 ACCAGTTTTGACTTAGTCGATTCTT 58.711 36.000 7.92 0.00 34.95 2.52
475 476 5.855045 ACCAGTTTTGACTTAGTCGATTCT 58.145 37.500 7.92 4.87 34.95 2.40
476 477 5.694910 TGACCAGTTTTGACTTAGTCGATTC 59.305 40.000 7.92 2.76 34.95 2.52
477 478 5.607477 TGACCAGTTTTGACTTAGTCGATT 58.393 37.500 7.92 0.00 34.95 3.34
478 479 5.209818 TGACCAGTTTTGACTTAGTCGAT 57.790 39.130 7.92 0.00 34.95 3.59
479 480 4.098960 ACTGACCAGTTTTGACTTAGTCGA 59.901 41.667 7.92 2.71 38.83 4.20
480 481 4.369182 ACTGACCAGTTTTGACTTAGTCG 58.631 43.478 7.92 0.00 38.83 4.18
481 482 5.357257 TGACTGACCAGTTTTGACTTAGTC 58.643 41.667 5.27 5.27 42.66 2.59
482 483 5.353394 TGACTGACCAGTTTTGACTTAGT 57.647 39.130 3.98 0.00 42.66 2.24
483 484 6.677781 TTTGACTGACCAGTTTTGACTTAG 57.322 37.500 3.98 0.00 42.66 2.18
484 485 6.262273 GGATTTGACTGACCAGTTTTGACTTA 59.738 38.462 3.98 0.00 42.66 2.24
485 486 5.067805 GGATTTGACTGACCAGTTTTGACTT 59.932 40.000 3.98 0.00 42.66 3.01
486 487 4.580580 GGATTTGACTGACCAGTTTTGACT 59.419 41.667 3.98 0.00 42.66 3.41
487 488 4.580580 AGGATTTGACTGACCAGTTTTGAC 59.419 41.667 3.98 0.00 42.66 3.18
488 489 4.792068 AGGATTTGACTGACCAGTTTTGA 58.208 39.130 3.98 0.00 42.66 2.69
489 490 5.520376 AAGGATTTGACTGACCAGTTTTG 57.480 39.130 3.98 0.00 42.66 2.44
504 505 2.417652 AGTTTTGGGCCCAAAGGATTT 58.582 42.857 40.70 25.63 45.15 2.17
505 506 2.106338 CAAGTTTTGGGCCCAAAGGATT 59.894 45.455 40.70 32.59 45.15 3.01
506 507 1.699083 CAAGTTTTGGGCCCAAAGGAT 59.301 47.619 40.70 29.72 45.15 3.24
507 508 1.127343 CAAGTTTTGGGCCCAAAGGA 58.873 50.000 40.70 29.25 45.15 3.36
508 509 1.127343 TCAAGTTTTGGGCCCAAAGG 58.873 50.000 40.70 31.20 45.15 3.11
509 510 1.484240 TGTCAAGTTTTGGGCCCAAAG 59.516 47.619 40.70 31.32 45.15 2.77
510 511 1.484240 CTGTCAAGTTTTGGGCCCAAA 59.516 47.619 40.46 40.46 43.23 3.28
511 512 1.118838 CTGTCAAGTTTTGGGCCCAA 58.881 50.000 34.07 34.07 0.00 4.12
512 513 1.398958 GCTGTCAAGTTTTGGGCCCA 61.399 55.000 24.45 24.45 0.00 5.36
513 514 1.367471 GCTGTCAAGTTTTGGGCCC 59.633 57.895 17.59 17.59 0.00 5.80
514 515 0.249447 GTGCTGTCAAGTTTTGGGCC 60.249 55.000 0.00 0.00 0.00 5.80
515 516 0.459489 TGTGCTGTCAAGTTTTGGGC 59.541 50.000 0.00 0.00 0.00 5.36
516 517 2.023673 TCTGTGCTGTCAAGTTTTGGG 58.976 47.619 0.00 0.00 0.00 4.12
517 518 2.423185 TGTCTGTGCTGTCAAGTTTTGG 59.577 45.455 0.00 0.00 0.00 3.28
518 519 3.763097 TGTCTGTGCTGTCAAGTTTTG 57.237 42.857 0.00 0.00 0.00 2.44
519 520 3.505680 TGTTGTCTGTGCTGTCAAGTTTT 59.494 39.130 0.00 0.00 0.00 2.43
520 521 3.081061 TGTTGTCTGTGCTGTCAAGTTT 58.919 40.909 0.00 0.00 0.00 2.66
521 522 2.679837 CTGTTGTCTGTGCTGTCAAGTT 59.320 45.455 0.00 0.00 0.00 2.66
522 523 2.283298 CTGTTGTCTGTGCTGTCAAGT 58.717 47.619 0.00 0.00 0.00 3.16
523 524 1.600957 CCTGTTGTCTGTGCTGTCAAG 59.399 52.381 0.00 0.00 0.00 3.02
524 525 1.209261 TCCTGTTGTCTGTGCTGTCAA 59.791 47.619 0.00 0.00 0.00 3.18
525 526 0.829990 TCCTGTTGTCTGTGCTGTCA 59.170 50.000 0.00 0.00 0.00 3.58
526 527 1.953559 TTCCTGTTGTCTGTGCTGTC 58.046 50.000 0.00 0.00 0.00 3.51
527 528 2.418368 TTTCCTGTTGTCTGTGCTGT 57.582 45.000 0.00 0.00 0.00 4.40
528 529 3.781079 TTTTTCCTGTTGTCTGTGCTG 57.219 42.857 0.00 0.00 0.00 4.41
548 549 6.763135 CCTTCTTTCTTTTTAGCTGCCTTTTT 59.237 34.615 0.00 0.00 0.00 1.94
549 550 6.098266 TCCTTCTTTCTTTTTAGCTGCCTTTT 59.902 34.615 0.00 0.00 0.00 2.27
550 551 5.598417 TCCTTCTTTCTTTTTAGCTGCCTTT 59.402 36.000 0.00 0.00 0.00 3.11
551 552 5.140454 TCCTTCTTTCTTTTTAGCTGCCTT 58.860 37.500 0.00 0.00 0.00 4.35
552 553 4.729868 TCCTTCTTTCTTTTTAGCTGCCT 58.270 39.130 0.00 0.00 0.00 4.75
553 554 5.453567 TTCCTTCTTTCTTTTTAGCTGCC 57.546 39.130 0.00 0.00 0.00 4.85
554 555 7.770801 TTTTTCCTTCTTTCTTTTTAGCTGC 57.229 32.000 0.00 0.00 0.00 5.25
575 576 4.293415 CAAGATGCGTGCTCTTTCTTTTT 58.707 39.130 4.52 0.00 30.60 1.94
576 577 3.304928 CCAAGATGCGTGCTCTTTCTTTT 60.305 43.478 4.52 0.00 30.60 2.27
577 578 2.227388 CCAAGATGCGTGCTCTTTCTTT 59.773 45.455 4.52 0.00 30.60 2.52
578 579 1.808945 CCAAGATGCGTGCTCTTTCTT 59.191 47.619 4.52 0.95 30.60 2.52
579 580 1.002430 TCCAAGATGCGTGCTCTTTCT 59.998 47.619 4.52 0.00 30.60 2.52
580 581 1.396301 CTCCAAGATGCGTGCTCTTTC 59.604 52.381 4.52 0.00 30.60 2.62
586 587 2.789917 CTGCTCCAAGATGCGTGC 59.210 61.111 0.00 0.00 0.00 5.34
591 592 4.098960 ACCATTAATTGCTGCTCCAAGATG 59.901 41.667 0.00 0.00 0.00 2.90
608 609 6.971756 TCGTTCGTCGATGTATTTTACCATTA 59.028 34.615 4.21 0.00 44.01 1.90
611 612 4.731720 TCGTTCGTCGATGTATTTTACCA 58.268 39.130 4.21 0.00 44.01 3.25
624 625 1.055338 GTTGGGTTAGTCGTTCGTCG 58.945 55.000 0.00 0.00 41.41 5.12
628 629 5.291971 TGTTTAGAGTTGGGTTAGTCGTTC 58.708 41.667 0.00 0.00 0.00 3.95
631 632 5.475719 TGATGTTTAGAGTTGGGTTAGTCG 58.524 41.667 0.00 0.00 0.00 4.18
632 633 5.875359 CCTGATGTTTAGAGTTGGGTTAGTC 59.125 44.000 0.00 0.00 0.00 2.59
633 634 5.803470 GCCTGATGTTTAGAGTTGGGTTAGT 60.803 44.000 0.00 0.00 0.00 2.24
634 635 4.636206 GCCTGATGTTTAGAGTTGGGTTAG 59.364 45.833 0.00 0.00 0.00 2.34
635 636 4.042311 TGCCTGATGTTTAGAGTTGGGTTA 59.958 41.667 0.00 0.00 0.00 2.85
636 637 3.181434 TGCCTGATGTTTAGAGTTGGGTT 60.181 43.478 0.00 0.00 0.00 4.11
637 638 2.375174 TGCCTGATGTTTAGAGTTGGGT 59.625 45.455 0.00 0.00 0.00 4.51
638 639 3.071874 TGCCTGATGTTTAGAGTTGGG 57.928 47.619 0.00 0.00 0.00 4.12
643 644 5.491982 ACCTAAGTTGCCTGATGTTTAGAG 58.508 41.667 0.00 0.00 0.00 2.43
645 646 7.171678 GCTATACCTAAGTTGCCTGATGTTTAG 59.828 40.741 0.00 0.00 0.00 1.85
650 651 5.220710 AGCTATACCTAAGTTGCCTGATG 57.779 43.478 0.00 0.00 0.00 3.07
663 664 5.844516 TCCCATAAGCACTTTAGCTATACCT 59.155 40.000 0.00 0.00 45.89 3.08
664 665 6.110411 TCCCATAAGCACTTTAGCTATACC 57.890 41.667 0.00 0.00 45.89 2.73
665 666 8.622948 ATTTCCCATAAGCACTTTAGCTATAC 57.377 34.615 0.00 0.00 45.89 1.47
670 671 6.693315 TGTATTTCCCATAAGCACTTTAGC 57.307 37.500 0.00 0.00 0.00 3.09
671 672 8.902806 TCAATGTATTTCCCATAAGCACTTTAG 58.097 33.333 0.00 0.00 0.00 1.85
674 679 6.322201 CCTCAATGTATTTCCCATAAGCACTT 59.678 38.462 0.00 0.00 0.00 3.16
685 690 3.443681 CACCCACACCTCAATGTATTTCC 59.556 47.826 0.00 0.00 0.00 3.13
686 691 3.443681 CCACCCACACCTCAATGTATTTC 59.556 47.826 0.00 0.00 0.00 2.17
733 738 5.477984 AGTGCTTGGAAAATGCAGAATAAGA 59.522 36.000 0.00 0.00 39.43 2.10
775 781 4.933400 GCTTGGAGACCTCAACGTATAAAA 59.067 41.667 0.00 0.00 0.00 1.52
809 826 2.223456 TGTTGTTGTTGAGAATGCACCG 60.223 45.455 0.00 0.00 0.00 4.94
850 867 0.494377 GAATTTTCTAATGCGCGCGC 59.506 50.000 45.02 45.02 42.35 6.86
851 868 1.769622 CTGAATTTTCTAATGCGCGCG 59.230 47.619 28.44 28.44 0.00 6.86
894 911 4.020543 ACTGGCACTTCAAACCAAACTAA 58.979 39.130 0.00 0.00 31.81 2.24
895 912 3.626930 ACTGGCACTTCAAACCAAACTA 58.373 40.909 0.00 0.00 31.81 2.24
896 913 2.427095 GACTGGCACTTCAAACCAAACT 59.573 45.455 0.00 0.00 31.81 2.66
897 914 2.427095 AGACTGGCACTTCAAACCAAAC 59.573 45.455 0.00 0.00 31.81 2.93
899 916 2.435372 AGACTGGCACTTCAAACCAA 57.565 45.000 0.00 0.00 31.81 3.67
900 917 2.426738 CAAAGACTGGCACTTCAAACCA 59.573 45.455 0.00 0.00 0.00 3.67
901 918 2.427095 ACAAAGACTGGCACTTCAAACC 59.573 45.455 0.00 0.00 0.00 3.27
902 919 3.782889 ACAAAGACTGGCACTTCAAAC 57.217 42.857 0.00 0.00 0.00 2.93
903 920 5.277779 CGATAACAAAGACTGGCACTTCAAA 60.278 40.000 0.00 0.00 0.00 2.69
951 991 2.202919 TGCTGGGCACGATGATCG 60.203 61.111 14.01 14.01 46.93 3.69
1070 1110 2.398554 GCACGCATGGACCAACGAT 61.399 57.895 22.79 7.98 0.00 3.73
1073 1113 4.101790 CCGCACGCATGGACCAAC 62.102 66.667 0.00 0.00 0.00 3.77
1089 1129 0.031585 GGAAACAAACCTTCACGGCC 59.968 55.000 0.00 0.00 35.61 6.13
1096 1136 2.024369 ACTCCAGGTGGAAACAAACCTT 60.024 45.455 0.00 0.00 44.63 3.50
1107 1153 0.319900 CAACTCGTCACTCCAGGTGG 60.320 60.000 0.00 0.00 45.38 4.61
1124 1170 4.202305 CCAAAGGCTTCCATTTAACACCAA 60.202 41.667 0.00 0.00 0.00 3.67
1125 1171 3.323403 CCAAAGGCTTCCATTTAACACCA 59.677 43.478 0.00 0.00 0.00 4.17
1127 1173 4.809673 CTCCAAAGGCTTCCATTTAACAC 58.190 43.478 0.00 0.00 0.00 3.32
1128 1174 3.258123 GCTCCAAAGGCTTCCATTTAACA 59.742 43.478 0.00 0.00 0.00 2.41
1131 1177 2.091541 CGCTCCAAAGGCTTCCATTTA 58.908 47.619 0.00 0.00 0.00 1.40
1178 1296 4.657824 CGCCTCCACCACGAACGT 62.658 66.667 0.00 0.00 0.00 3.99
1192 1310 4.980805 TGTTCCCTGCACGTCGCC 62.981 66.667 7.38 0.00 41.33 5.54
1214 1332 4.720902 CAGACATGGTGCCCCGCA 62.721 66.667 0.00 0.00 35.60 5.69
1252 1376 1.832167 TGGACTTGCAAGCCCAACC 60.832 57.895 29.72 21.31 35.50 3.77
1529 1691 3.062234 GGAAATCGGTTAGTTTCTCAGCG 59.938 47.826 0.00 0.00 35.29 5.18
1530 1692 4.000988 TGGAAATCGGTTAGTTTCTCAGC 58.999 43.478 0.00 0.00 35.29 4.26
1568 1745 2.107141 CAGCGAGTCCCGGGAATC 59.893 66.667 35.72 35.72 39.04 2.52
1674 1851 1.608717 GGAAGCTGCCGAGGAAGAGA 61.609 60.000 0.00 0.00 0.00 3.10
1828 2005 2.009774 CTTGGTCATGAAGCGGTTAGG 58.990 52.381 0.00 0.00 0.00 2.69
1957 2463 8.891671 AATGCAATATTTCTCAACAGTTTGTT 57.108 26.923 0.00 0.00 42.08 2.83
2151 2670 0.179094 CCATGTCGGCGTAAAGGCTA 60.179 55.000 6.85 0.00 44.22 3.93
2394 2913 2.411547 GCAGAAACCGTCAAAGATCACG 60.412 50.000 0.00 0.00 35.72 4.35
2424 2943 5.163550 CGTACATACCTTGTCCATCTCTTCA 60.164 44.000 0.00 0.00 39.87 3.02
2547 3066 2.294979 GGGAACGTCCACTTGAACTTT 58.705 47.619 0.00 0.00 38.64 2.66
2654 3174 5.976870 AGGAGGAGGTAATTCCCTTTCATTA 59.023 40.000 0.00 0.00 38.02 1.90
2657 3177 3.780850 GAGGAGGAGGTAATTCCCTTTCA 59.219 47.826 0.00 0.00 38.02 2.69
2663 3183 1.436326 GGGGAGGAGGAGGTAATTCC 58.564 60.000 0.00 0.00 37.52 3.01
2688 3208 1.106944 TAGGGACATCGAGATGCGCA 61.107 55.000 14.96 14.96 42.39 6.09
2697 3217 2.320781 AGGGTCTTCATAGGGACATCG 58.679 52.381 0.00 0.00 34.49 3.84
2700 3220 3.107601 CTGAAGGGTCTTCATAGGGACA 58.892 50.000 10.30 0.00 34.49 4.02
2756 3276 6.794374 TGAGGCGTTATCGTATAGTAAAACA 58.206 36.000 0.00 0.00 39.49 2.83
2766 3286 5.314923 AGTAAAACTGAGGCGTTATCGTA 57.685 39.130 0.00 0.00 39.49 3.43
2840 3360 4.283467 GGGTTTATGGCAAACCTTCTCTTT 59.717 41.667 18.04 0.00 46.71 2.52
2856 3376 7.255486 GCTAGTTTGAGTTTCACTTGGGTTTAT 60.255 37.037 0.00 0.00 0.00 1.40
2864 3384 6.869388 GCTACTAGCTAGTTTGAGTTTCACTT 59.131 38.462 30.40 3.94 38.45 3.16
2888 3408 6.363357 GTGGATTCAGTTTCAATGTAGTTTGC 59.637 38.462 0.00 0.00 0.00 3.68
2889 3409 6.863126 GGTGGATTCAGTTTCAATGTAGTTTG 59.137 38.462 0.00 0.00 0.00 2.93
3028 3550 7.525854 CGTTTTAGCGGATTTCAAATTTTTGTC 59.474 33.333 3.18 0.00 39.18 3.18
3035 3557 5.365403 TCACGTTTTAGCGGATTTCAAAT 57.635 34.783 0.00 0.00 35.98 2.32
3133 3655 9.831737 ATGAAATATTGACGAAACTTTCTGAAG 57.168 29.630 0.00 0.00 38.87 3.02
3137 3659 8.792633 TGGAATGAAATATTGACGAAACTTTCT 58.207 29.630 0.00 0.00 0.00 2.52
3219 3745 8.934023 AACCTTTTTGTTATCTTGATGGTCTA 57.066 30.769 0.00 0.00 0.00 2.59
3503 4290 3.256631 GCACTTTGACATTTGTGGGATCT 59.743 43.478 0.00 0.00 0.00 2.75
3512 4299 5.534207 TGATTCCAAGCACTTTGACATTT 57.466 34.783 0.00 0.00 39.21 2.32
3541 4328 6.149973 CACATGTATGTTGATGTCCAAGAACT 59.850 38.462 0.00 0.00 39.39 3.01
3544 4331 5.803552 TCACATGTATGTTGATGTCCAAGA 58.196 37.500 0.00 0.00 39.39 3.02
3567 4354 5.471456 GCATATGGAATCAACGAGGATTTCT 59.529 40.000 4.56 3.24 37.61 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.