Multiple sequence alignment - TraesCS3B01G463700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G463700 | chr3B | 100.000 | 2810 | 0 | 0 | 857 | 3666 | 706754516 | 706757325 | 0.000000e+00 | 5190.0 |
1 | TraesCS3B01G463700 | chr3B | 94.088 | 1573 | 71 | 7 | 1531 | 3097 | 706185586 | 706187142 | 0.000000e+00 | 2370.0 |
2 | TraesCS3B01G463700 | chr3B | 88.378 | 1609 | 140 | 21 | 1026 | 2619 | 706028906 | 706027330 | 0.000000e+00 | 1892.0 |
3 | TraesCS3B01G463700 | chr3B | 87.968 | 1604 | 136 | 24 | 1026 | 2619 | 706182883 | 706184439 | 0.000000e+00 | 1840.0 |
4 | TraesCS3B01G463700 | chr3B | 100.000 | 611 | 0 | 0 | 1 | 611 | 706753660 | 706754270 | 0.000000e+00 | 1129.0 |
5 | TraesCS3B01G463700 | chr3B | 90.283 | 247 | 18 | 3 | 3085 | 3328 | 706187086 | 706187329 | 5.910000e-83 | 318.0 |
6 | TraesCS3B01G463700 | chr3B | 82.508 | 303 | 51 | 2 | 2310 | 2611 | 706560941 | 706561242 | 7.810000e-67 | 265.0 |
7 | TraesCS3B01G463700 | chr3B | 80.707 | 311 | 58 | 2 | 2310 | 2619 | 706603936 | 706604245 | 1.320000e-59 | 241.0 |
8 | TraesCS3B01G463700 | chr3B | 79.389 | 262 | 29 | 16 | 309 | 562 | 706029185 | 706028941 | 1.050000e-35 | 161.0 |
9 | TraesCS3B01G463700 | chr3B | 93.396 | 106 | 6 | 1 | 3562 | 3666 | 706189183 | 706189288 | 4.900000e-34 | 156.0 |
10 | TraesCS3B01G463700 | chr3B | 75.174 | 431 | 51 | 21 | 3107 | 3509 | 706187499 | 706187901 | 6.340000e-33 | 152.0 |
11 | TraesCS3B01G463700 | chr3B | 94.505 | 91 | 5 | 0 | 3576 | 3666 | 706181489 | 706181579 | 1.370000e-29 | 141.0 |
12 | TraesCS3B01G463700 | chr3B | 83.200 | 125 | 18 | 3 | 3129 | 3251 | 706027017 | 706026894 | 1.080000e-20 | 111.0 |
13 | TraesCS3B01G463700 | chr3B | 89.773 | 88 | 4 | 3 | 3576 | 3663 | 706727031 | 706727113 | 1.390000e-19 | 108.0 |
14 | TraesCS3B01G463700 | chr3B | 79.167 | 144 | 23 | 5 | 3079 | 3219 | 706756693 | 706756832 | 3.900000e-15 | 93.5 |
15 | TraesCS3B01G463700 | chr3B | 79.167 | 144 | 23 | 5 | 3034 | 3173 | 706756738 | 706756878 | 3.900000e-15 | 93.5 |
16 | TraesCS3B01G463700 | chr3B | 80.620 | 129 | 7 | 7 | 2797 | 2925 | 706184679 | 706184789 | 2.350000e-12 | 84.2 |
17 | TraesCS3B01G463700 | chr3D | 95.128 | 2114 | 83 | 6 | 988 | 3097 | 535399919 | 535402016 | 0.000000e+00 | 3315.0 |
18 | TraesCS3B01G463700 | chr3D | 89.375 | 1600 | 128 | 20 | 1026 | 2614 | 533960104 | 533958536 | 0.000000e+00 | 1975.0 |
19 | TraesCS3B01G463700 | chr3D | 87.656 | 1604 | 158 | 23 | 1026 | 2619 | 534115611 | 534117184 | 0.000000e+00 | 1829.0 |
20 | TraesCS3B01G463700 | chr3D | 85.481 | 551 | 43 | 24 | 3146 | 3663 | 535402469 | 535403015 | 1.160000e-149 | 540.0 |
21 | TraesCS3B01G463700 | chr3D | 93.231 | 325 | 16 | 4 | 245 | 569 | 535399608 | 535399926 | 1.190000e-129 | 473.0 |
22 | TraesCS3B01G463700 | chr3D | 92.771 | 166 | 8 | 3 | 3169 | 3333 | 535401997 | 535402159 | 1.700000e-58 | 237.0 |
23 | TraesCS3B01G463700 | chr3D | 95.333 | 150 | 3 | 4 | 1 | 146 | 535382969 | 535383118 | 6.120000e-58 | 235.0 |
24 | TraesCS3B01G463700 | chr3D | 79.211 | 279 | 32 | 15 | 290 | 562 | 533960397 | 533960139 | 1.750000e-38 | 171.0 |
25 | TraesCS3B01G463700 | chr3D | 93.407 | 91 | 5 | 1 | 3576 | 3666 | 534108654 | 534108743 | 2.300000e-27 | 134.0 |
26 | TraesCS3B01G463700 | chr3D | 84.000 | 125 | 17 | 3 | 3129 | 3251 | 533958190 | 533958067 | 2.310000e-22 | 117.0 |
27 | TraesCS3B01G463700 | chr3D | 85.981 | 107 | 9 | 4 | 146 | 252 | 535398494 | 535398594 | 3.870000e-20 | 110.0 |
28 | TraesCS3B01G463700 | chr3D | 97.297 | 37 | 1 | 0 | 3613 | 3649 | 534766145 | 534766181 | 3.060000e-06 | 63.9 |
29 | TraesCS3B01G463700 | chr3A | 93.659 | 1577 | 69 | 9 | 1515 | 3089 | 670545601 | 670547148 | 0.000000e+00 | 2329.0 |
30 | TraesCS3B01G463700 | chr3A | 89.608 | 510 | 30 | 15 | 76 | 569 | 670535242 | 670535744 | 8.640000e-176 | 627.0 |
31 | TraesCS3B01G463700 | chr3A | 90.688 | 247 | 18 | 4 | 3087 | 3333 | 670547101 | 670547342 | 1.270000e-84 | 324.0 |
32 | TraesCS3B01G463700 | chr3A | 91.589 | 214 | 16 | 2 | 3326 | 3539 | 670548059 | 670548270 | 9.960000e-76 | 294.0 |
33 | TraesCS3B01G463700 | chr3A | 100.000 | 44 | 0 | 0 | 568 | 611 | 219342059 | 219342102 | 8.440000e-12 | 82.4 |
34 | TraesCS3B01G463700 | chr3A | 100.000 | 43 | 0 | 0 | 569 | 611 | 219340490 | 219340532 | 3.030000e-11 | 80.5 |
35 | TraesCS3B01G463700 | chr4D | 81.418 | 1523 | 233 | 30 | 1026 | 2525 | 98015617 | 98014122 | 0.000000e+00 | 1199.0 |
36 | TraesCS3B01G463700 | chr4D | 79.531 | 1578 | 256 | 37 | 1055 | 2614 | 435198925 | 435197397 | 0.000000e+00 | 1062.0 |
37 | TraesCS3B01G463700 | chr4D | 78.321 | 1453 | 235 | 52 | 1026 | 2451 | 505358889 | 505357490 | 0.000000e+00 | 865.0 |
38 | TraesCS3B01G463700 | chr4D | 79.023 | 1249 | 199 | 40 | 1225 | 2447 | 97962020 | 97960809 | 0.000000e+00 | 797.0 |
39 | TraesCS3B01G463700 | chr4D | 97.872 | 47 | 1 | 0 | 565 | 611 | 506936029 | 506936075 | 8.440000e-12 | 82.4 |
40 | TraesCS3B01G463700 | chr4A | 81.448 | 1450 | 220 | 33 | 1026 | 2451 | 478191212 | 478192636 | 0.000000e+00 | 1142.0 |
41 | TraesCS3B01G463700 | chr4A | 100.000 | 43 | 0 | 0 | 569 | 611 | 304782564 | 304782522 | 3.030000e-11 | 80.5 |
42 | TraesCS3B01G463700 | chr7D | 79.092 | 1454 | 232 | 46 | 1026 | 2451 | 63462346 | 63463755 | 0.000000e+00 | 935.0 |
43 | TraesCS3B01G463700 | chr4B | 78.766 | 1248 | 205 | 38 | 1225 | 2447 | 139548785 | 139547573 | 0.000000e+00 | 782.0 |
44 | TraesCS3B01G463700 | chr4B | 97.059 | 136 | 4 | 0 | 857 | 992 | 455976668 | 455976803 | 2.850000e-56 | 230.0 |
45 | TraesCS3B01G463700 | chr5B | 98.473 | 131 | 2 | 0 | 857 | 987 | 604227752 | 604227882 | 7.920000e-57 | 231.0 |
46 | TraesCS3B01G463700 | chr5B | 97.727 | 132 | 3 | 0 | 857 | 988 | 528367858 | 528367989 | 1.020000e-55 | 228.0 |
47 | TraesCS3B01G463700 | chr5A | 97.080 | 137 | 3 | 1 | 857 | 993 | 525451136 | 525451001 | 2.850000e-56 | 230.0 |
48 | TraesCS3B01G463700 | chr6A | 97.037 | 135 | 4 | 0 | 857 | 991 | 72967818 | 72967952 | 1.020000e-55 | 228.0 |
49 | TraesCS3B01G463700 | chr6A | 97.710 | 131 | 3 | 0 | 857 | 987 | 201453136 | 201453006 | 3.680000e-55 | 226.0 |
50 | TraesCS3B01G463700 | chr6A | 97.710 | 131 | 3 | 0 | 857 | 987 | 404480049 | 404479919 | 3.680000e-55 | 226.0 |
51 | TraesCS3B01G463700 | chr1B | 97.037 | 135 | 3 | 1 | 857 | 991 | 524162401 | 524162268 | 3.680000e-55 | 226.0 |
52 | TraesCS3B01G463700 | chr2B | 96.350 | 137 | 4 | 1 | 857 | 993 | 702727771 | 702727636 | 1.320000e-54 | 224.0 |
53 | TraesCS3B01G463700 | chr2B | 100.000 | 43 | 0 | 0 | 569 | 611 | 702728458 | 702728416 | 3.030000e-11 | 80.5 |
54 | TraesCS3B01G463700 | chr2B | 97.826 | 46 | 1 | 0 | 566 | 611 | 703972405 | 703972360 | 3.030000e-11 | 80.5 |
55 | TraesCS3B01G463700 | chr6B | 86.207 | 203 | 28 | 0 | 2246 | 2448 | 134839615 | 134839817 | 1.710000e-53 | 220.0 |
56 | TraesCS3B01G463700 | chr1A | 100.000 | 42 | 0 | 0 | 570 | 611 | 243143687 | 243143646 | 1.090000e-10 | 78.7 |
57 | TraesCS3B01G463700 | chr2D | 91.071 | 56 | 4 | 1 | 556 | 611 | 614868124 | 614868178 | 1.410000e-09 | 75.0 |
58 | TraesCS3B01G463700 | chr7B | 90.566 | 53 | 2 | 3 | 554 | 605 | 355749951 | 355750001 | 2.360000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G463700 | chr3B | 706753660 | 706757325 | 3665 | False | 1626.500000 | 5190 | 89.583500 | 1 | 3666 | 4 | chr3B.!!$F5 | 3665 |
1 | TraesCS3B01G463700 | chr3B | 706181489 | 706189288 | 7799 | False | 723.028571 | 2370 | 88.004857 | 1026 | 3666 | 7 | chr3B.!!$F4 | 2640 |
2 | TraesCS3B01G463700 | chr3B | 706026894 | 706029185 | 2291 | True | 721.333333 | 1892 | 83.655667 | 309 | 3251 | 3 | chr3B.!!$R1 | 2942 |
3 | TraesCS3B01G463700 | chr3D | 534115611 | 534117184 | 1573 | False | 1829.000000 | 1829 | 87.656000 | 1026 | 2619 | 1 | chr3D.!!$F2 | 1593 |
4 | TraesCS3B01G463700 | chr3D | 535398494 | 535403015 | 4521 | False | 935.000000 | 3315 | 90.518400 | 146 | 3663 | 5 | chr3D.!!$F5 | 3517 |
5 | TraesCS3B01G463700 | chr3D | 533958067 | 533960397 | 2330 | True | 754.333333 | 1975 | 84.195333 | 290 | 3251 | 3 | chr3D.!!$R1 | 2961 |
6 | TraesCS3B01G463700 | chr3A | 670545601 | 670548270 | 2669 | False | 982.333333 | 2329 | 91.978667 | 1515 | 3539 | 3 | chr3A.!!$F3 | 2024 |
7 | TraesCS3B01G463700 | chr3A | 670535242 | 670535744 | 502 | False | 627.000000 | 627 | 89.608000 | 76 | 569 | 1 | chr3A.!!$F1 | 493 |
8 | TraesCS3B01G463700 | chr4D | 98014122 | 98015617 | 1495 | True | 1199.000000 | 1199 | 81.418000 | 1026 | 2525 | 1 | chr4D.!!$R2 | 1499 |
9 | TraesCS3B01G463700 | chr4D | 435197397 | 435198925 | 1528 | True | 1062.000000 | 1062 | 79.531000 | 1055 | 2614 | 1 | chr4D.!!$R3 | 1559 |
10 | TraesCS3B01G463700 | chr4D | 505357490 | 505358889 | 1399 | True | 865.000000 | 865 | 78.321000 | 1026 | 2451 | 1 | chr4D.!!$R4 | 1425 |
11 | TraesCS3B01G463700 | chr4D | 97960809 | 97962020 | 1211 | True | 797.000000 | 797 | 79.023000 | 1225 | 2447 | 1 | chr4D.!!$R1 | 1222 |
12 | TraesCS3B01G463700 | chr4A | 478191212 | 478192636 | 1424 | False | 1142.000000 | 1142 | 81.448000 | 1026 | 2451 | 1 | chr4A.!!$F1 | 1425 |
13 | TraesCS3B01G463700 | chr7D | 63462346 | 63463755 | 1409 | False | 935.000000 | 935 | 79.092000 | 1026 | 2451 | 1 | chr7D.!!$F1 | 1425 |
14 | TraesCS3B01G463700 | chr4B | 139547573 | 139548785 | 1212 | True | 782.000000 | 782 | 78.766000 | 1225 | 2447 | 1 | chr4B.!!$R1 | 1222 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
40 | 41 | 0.106819 | AGATGGTGGGATGCTGCTTC | 60.107 | 55.0 | 6.97 | 6.97 | 0.0 | 3.86 | F |
577 | 1619 | 0.254178 | CCCCACTCAATCAGACCTGG | 59.746 | 60.0 | 0.00 | 0.00 | 0.0 | 4.45 | F |
580 | 1622 | 0.325933 | CACTCAATCAGACCTGGCCA | 59.674 | 55.0 | 4.71 | 4.71 | 0.0 | 5.36 | F |
585 | 1627 | 0.609131 | AATCAGACCTGGCCAAACGG | 60.609 | 55.0 | 7.01 | 7.56 | 0.0 | 4.44 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1850 | 2917 | 0.255890 | ACCAGGCGCCTTAATGATGT | 59.744 | 50.000 | 30.6 | 12.3 | 0.00 | 3.06 | R |
1857 | 2924 | 1.298667 | GGAGAAACCAGGCGCCTTA | 59.701 | 57.895 | 30.6 | 0.0 | 38.79 | 2.69 | R |
2126 | 5421 | 1.888391 | GCCAAAAGAAGAGTCAGGGGG | 60.888 | 57.143 | 0.0 | 0.0 | 0.00 | 5.40 | R |
2677 | 6161 | 3.300667 | CTGCCAACTTCGACGCTGC | 62.301 | 63.158 | 0.0 | 0.0 | 0.00 | 5.25 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 2.384899 | GAGTTTTGCACTGGACGAAC | 57.615 | 50.000 | 0.00 | 0.00 | 35.01 | 3.95 |
20 | 21 | 1.668751 | GAGTTTTGCACTGGACGAACA | 59.331 | 47.619 | 0.00 | 0.00 | 35.01 | 3.18 |
21 | 22 | 2.088423 | AGTTTTGCACTGGACGAACAA | 58.912 | 42.857 | 0.00 | 0.00 | 32.83 | 2.83 |
22 | 23 | 2.097466 | AGTTTTGCACTGGACGAACAAG | 59.903 | 45.455 | 0.00 | 0.00 | 32.83 | 3.16 |
25 | 26 | 1.511850 | TGCACTGGACGAACAAGATG | 58.488 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
28 | 29 | 1.800586 | CACTGGACGAACAAGATGGTG | 59.199 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
29 | 30 | 1.270839 | ACTGGACGAACAAGATGGTGG | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
31 | 32 | 0.323629 | GGACGAACAAGATGGTGGGA | 59.676 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
32 | 33 | 1.065418 | GGACGAACAAGATGGTGGGAT | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
33 | 34 | 2.009774 | GACGAACAAGATGGTGGGATG | 58.990 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
35 | 36 | 1.679944 | CGAACAAGATGGTGGGATGCT | 60.680 | 52.381 | 0.00 | 0.00 | 0.00 | 3.79 |
36 | 37 | 1.747355 | GAACAAGATGGTGGGATGCTG | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
37 | 38 | 0.682209 | ACAAGATGGTGGGATGCTGC | 60.682 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
39 | 40 | 0.333993 | AAGATGGTGGGATGCTGCTT | 59.666 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
40 | 41 | 0.106819 | AGATGGTGGGATGCTGCTTC | 60.107 | 55.000 | 6.97 | 6.97 | 0.00 | 3.86 |
41 | 42 | 0.106819 | GATGGTGGGATGCTGCTTCT | 60.107 | 55.000 | 14.20 | 0.00 | 0.00 | 2.85 |
42 | 43 | 0.395311 | ATGGTGGGATGCTGCTTCTG | 60.395 | 55.000 | 14.20 | 0.00 | 0.00 | 3.02 |
69 | 70 | 1.863880 | GCAGAGTGCGTCGACGTAG | 60.864 | 63.158 | 35.48 | 21.62 | 42.22 | 3.51 |
70 | 71 | 1.863880 | CAGAGTGCGTCGACGTAGC | 60.864 | 63.158 | 35.48 | 25.60 | 42.22 | 3.58 |
71 | 72 | 2.033755 | AGAGTGCGTCGACGTAGCT | 61.034 | 57.895 | 35.48 | 28.38 | 42.22 | 3.32 |
73 | 74 | 0.304098 | GAGTGCGTCGACGTAGCTAT | 59.696 | 55.000 | 35.48 | 19.04 | 42.22 | 2.97 |
74 | 75 | 0.731417 | AGTGCGTCGACGTAGCTATT | 59.269 | 50.000 | 35.48 | 14.03 | 42.22 | 1.73 |
178 | 184 | 7.540474 | AGATTCTACTTAGTTGGACAGACAA | 57.460 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
179 | 185 | 7.963532 | AGATTCTACTTAGTTGGACAGACAAA | 58.036 | 34.615 | 0.00 | 0.00 | 31.17 | 2.83 |
180 | 186 | 7.873505 | AGATTCTACTTAGTTGGACAGACAAAC | 59.126 | 37.037 | 0.00 | 0.00 | 31.17 | 2.93 |
181 | 187 | 5.526115 | TCTACTTAGTTGGACAGACAAACG | 58.474 | 41.667 | 0.00 | 0.00 | 31.17 | 3.60 |
182 | 188 | 4.395959 | ACTTAGTTGGACAGACAAACGA | 57.604 | 40.909 | 0.00 | 0.00 | 31.17 | 3.85 |
198 | 204 | 4.511826 | ACAAACGAACCTCTGAATTGTCTC | 59.488 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
202 | 208 | 3.611766 | CGAACCTCTGAATTGTCTCGTCA | 60.612 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
240 | 256 | 9.554724 | GACGATGTAATGCTCTTTTGATTTTAA | 57.445 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
256 | 1293 | 5.239306 | TGATTTTAATGAAGCTAGCCATCCG | 59.761 | 40.000 | 12.13 | 0.00 | 0.00 | 4.18 |
258 | 1295 | 1.131638 | AATGAAGCTAGCCATCCGGA | 58.868 | 50.000 | 12.13 | 6.61 | 0.00 | 5.14 |
262 | 1299 | 1.943340 | GAAGCTAGCCATCCGGAAAAG | 59.057 | 52.381 | 9.01 | 0.37 | 0.00 | 2.27 |
397 | 1439 | 4.176752 | GTCGGCTCATCCCCACCC | 62.177 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
564 | 1606 | 2.113139 | CGCTTGTTCCACCCCACT | 59.887 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
569 | 1611 | 2.162681 | CTTGTTCCACCCCACTCAATC | 58.837 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
570 | 1612 | 1.144691 | TGTTCCACCCCACTCAATCA | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
572 | 1614 | 1.351017 | GTTCCACCCCACTCAATCAGA | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
576 | 1618 | 0.987294 | ACCCCACTCAATCAGACCTG | 59.013 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
577 | 1619 | 0.254178 | CCCCACTCAATCAGACCTGG | 59.746 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
580 | 1622 | 0.325933 | CACTCAATCAGACCTGGCCA | 59.674 | 55.000 | 4.71 | 4.71 | 0.00 | 5.36 |
581 | 1623 | 1.067295 | ACTCAATCAGACCTGGCCAA | 58.933 | 50.000 | 7.01 | 0.00 | 0.00 | 4.52 |
582 | 1624 | 1.425066 | ACTCAATCAGACCTGGCCAAA | 59.575 | 47.619 | 7.01 | 0.00 | 0.00 | 3.28 |
585 | 1627 | 0.609131 | AATCAGACCTGGCCAAACGG | 60.609 | 55.000 | 7.01 | 7.56 | 0.00 | 4.44 |
586 | 1628 | 2.484287 | ATCAGACCTGGCCAAACGGG | 62.484 | 60.000 | 7.01 | 7.12 | 42.81 | 5.28 |
913 | 1955 | 3.784412 | CGTTTAGCCCGTGCCGTG | 61.784 | 66.667 | 0.00 | 0.00 | 38.69 | 4.94 |
914 | 1956 | 4.097863 | GTTTAGCCCGTGCCGTGC | 62.098 | 66.667 | 0.00 | 0.00 | 38.69 | 5.34 |
973 | 2015 | 4.404098 | CTGTTTAGCCCGGCCCGT | 62.404 | 66.667 | 5.55 | 0.00 | 0.00 | 5.28 |
974 | 2016 | 3.912745 | CTGTTTAGCCCGGCCCGTT | 62.913 | 63.158 | 5.55 | 0.00 | 0.00 | 4.44 |
975 | 2017 | 2.674033 | GTTTAGCCCGGCCCGTTT | 60.674 | 61.111 | 5.55 | 0.00 | 0.00 | 3.60 |
976 | 2018 | 2.673687 | TTTAGCCCGGCCCGTTTG | 60.674 | 61.111 | 5.55 | 0.00 | 0.00 | 2.93 |
977 | 2019 | 4.726304 | TTAGCCCGGCCCGTTTGG | 62.726 | 66.667 | 5.55 | 0.00 | 37.09 | 3.28 |
988 | 2030 | 2.116827 | CCCGTTTGGCCAGTTATACA | 57.883 | 50.000 | 5.11 | 0.00 | 0.00 | 2.29 |
989 | 2031 | 1.741145 | CCCGTTTGGCCAGTTATACAC | 59.259 | 52.381 | 5.11 | 0.00 | 0.00 | 2.90 |
990 | 2032 | 1.741145 | CCGTTTGGCCAGTTATACACC | 59.259 | 52.381 | 5.11 | 0.00 | 0.00 | 4.16 |
991 | 2033 | 1.741145 | CGTTTGGCCAGTTATACACCC | 59.259 | 52.381 | 5.11 | 0.00 | 0.00 | 4.61 |
992 | 2034 | 2.797786 | GTTTGGCCAGTTATACACCCA | 58.202 | 47.619 | 5.11 | 0.00 | 0.00 | 4.51 |
993 | 2035 | 3.158676 | GTTTGGCCAGTTATACACCCAA | 58.841 | 45.455 | 5.11 | 0.00 | 0.00 | 4.12 |
994 | 2036 | 3.748645 | TTGGCCAGTTATACACCCAAT | 57.251 | 42.857 | 5.11 | 0.00 | 0.00 | 3.16 |
1850 | 2917 | 1.621317 | TGTCCTAGATGTCGGCAACAA | 59.379 | 47.619 | 0.00 | 0.00 | 42.37 | 2.83 |
1857 | 2924 | 3.084039 | AGATGTCGGCAACAACATCATT | 58.916 | 40.909 | 15.53 | 0.00 | 42.37 | 2.57 |
1862 | 2929 | 2.163412 | TCGGCAACAACATCATTAAGGC | 59.837 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
1890 | 2963 | 4.082026 | GGTTTCTCCATTGGTTCAATCCTG | 60.082 | 45.833 | 1.86 | 0.00 | 31.05 | 3.86 |
1963 | 3062 | 5.463286 | TGTGAATCTGTGATTGATTGCAAC | 58.537 | 37.500 | 0.00 | 0.00 | 36.72 | 4.17 |
1964 | 3063 | 5.242171 | TGTGAATCTGTGATTGATTGCAACT | 59.758 | 36.000 | 0.00 | 0.00 | 36.72 | 3.16 |
1965 | 3064 | 5.571741 | GTGAATCTGTGATTGATTGCAACTG | 59.428 | 40.000 | 0.00 | 0.00 | 36.72 | 3.16 |
1966 | 3065 | 3.564235 | TCTGTGATTGATTGCAACTGC | 57.436 | 42.857 | 0.00 | 0.00 | 36.72 | 4.40 |
1977 | 3076 | 3.060615 | CAACTGCAGGCTGGGAGC | 61.061 | 66.667 | 19.93 | 1.54 | 41.46 | 4.70 |
2418 | 5747 | 1.237285 | TTCTTTGAGAGCGCCTTGGC | 61.237 | 55.000 | 2.29 | 0.75 | 0.00 | 4.52 |
2677 | 6161 | 2.481854 | CTGTGCTAGCCTGATTAGCTG | 58.518 | 52.381 | 13.29 | 0.00 | 43.07 | 4.24 |
2744 | 6256 | 0.110678 | TTGGCAATTACGGACCACCA | 59.889 | 50.000 | 0.00 | 0.00 | 35.59 | 4.17 |
2745 | 6257 | 0.329931 | TGGCAATTACGGACCACCAT | 59.670 | 50.000 | 0.00 | 0.00 | 35.59 | 3.55 |
2746 | 6258 | 1.021968 | GGCAATTACGGACCACCATC | 58.978 | 55.000 | 0.00 | 0.00 | 35.59 | 3.51 |
2747 | 6259 | 1.021968 | GCAATTACGGACCACCATCC | 58.978 | 55.000 | 0.00 | 0.00 | 35.59 | 3.51 |
2748 | 6260 | 1.680555 | GCAATTACGGACCACCATCCA | 60.681 | 52.381 | 0.00 | 0.00 | 38.87 | 3.41 |
2749 | 6261 | 2.930950 | CAATTACGGACCACCATCCAT | 58.069 | 47.619 | 0.00 | 0.00 | 38.87 | 3.41 |
2750 | 6262 | 2.878406 | CAATTACGGACCACCATCCATC | 59.122 | 50.000 | 0.00 | 0.00 | 38.87 | 3.51 |
2773 | 6285 | 6.964908 | TCGTGTATGTGTTTCATGTGATTTT | 58.035 | 32.000 | 0.00 | 0.00 | 37.91 | 1.82 |
2777 | 6289 | 8.268052 | GTGTATGTGTTTCATGTGATTTTGTTG | 58.732 | 33.333 | 0.00 | 0.00 | 37.91 | 3.33 |
2975 | 6488 | 2.230992 | TGCTTTGCTTTGTGTCTTGTGT | 59.769 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
2987 | 6501 | 1.737236 | GTCTTGTGTGTTGTGCTGTGA | 59.263 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
3026 | 6540 | 2.896044 | TCATGCTGGTTGGCAATTACAA | 59.104 | 40.909 | 1.92 | 0.00 | 45.68 | 2.41 |
3054 | 6568 | 5.559608 | GCCATATCTGTGTTTCATGTGATCG | 60.560 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3065 | 6579 | 5.774498 | TTCATGTGATCGCACTATCTAGT | 57.226 | 39.130 | 11.96 | 0.00 | 45.36 | 2.57 |
3079 | 6593 | 7.362487 | CGCACTATCTAGTTGTGATAGGATGAT | 60.362 | 40.741 | 13.21 | 0.00 | 44.46 | 2.45 |
3080 | 6594 | 8.961634 | GCACTATCTAGTTGTGATAGGATGATA | 58.038 | 37.037 | 13.21 | 0.00 | 44.46 | 2.15 |
3083 | 6597 | 9.995957 | CTATCTAGTTGTGATAGGATGATAACG | 57.004 | 37.037 | 0.00 | 0.00 | 39.54 | 3.18 |
3084 | 6598 | 7.215719 | TCTAGTTGTGATAGGATGATAACGG | 57.784 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3085 | 6599 | 5.871396 | AGTTGTGATAGGATGATAACGGT | 57.129 | 39.130 | 0.00 | 0.00 | 0.00 | 4.83 |
3086 | 6600 | 5.601662 | AGTTGTGATAGGATGATAACGGTG | 58.398 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
3087 | 6601 | 5.128827 | AGTTGTGATAGGATGATAACGGTGT | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3088 | 6602 | 5.607939 | TGTGATAGGATGATAACGGTGTT | 57.392 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
3089 | 6603 | 5.597806 | TGTGATAGGATGATAACGGTGTTC | 58.402 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3090 | 6604 | 4.989168 | GTGATAGGATGATAACGGTGTTCC | 59.011 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
3091 | 6605 | 4.651962 | TGATAGGATGATAACGGTGTTCCA | 59.348 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
3092 | 6606 | 5.306937 | TGATAGGATGATAACGGTGTTCCAT | 59.693 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3093 | 6607 | 3.808728 | AGGATGATAACGGTGTTCCATG | 58.191 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
3094 | 6608 | 3.199946 | AGGATGATAACGGTGTTCCATGT | 59.800 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
3095 | 6609 | 3.312421 | GGATGATAACGGTGTTCCATGTG | 59.688 | 47.826 | 0.00 | 0.00 | 0.00 | 3.21 |
3096 | 6610 | 3.686916 | TGATAACGGTGTTCCATGTGA | 57.313 | 42.857 | 0.00 | 0.00 | 0.00 | 3.58 |
3097 | 6611 | 4.214986 | TGATAACGGTGTTCCATGTGAT | 57.785 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
3098 | 6612 | 4.188462 | TGATAACGGTGTTCCATGTGATC | 58.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
3099 | 6613 | 1.438651 | AACGGTGTTCCATGTGATCG | 58.561 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3100 | 6614 | 1.019278 | ACGGTGTTCCATGTGATCGC | 61.019 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
3101 | 6615 | 1.018752 | CGGTGTTCCATGTGATCGCA | 61.019 | 55.000 | 12.12 | 12.12 | 0.00 | 5.10 |
3102 | 6616 | 0.447801 | GGTGTTCCATGTGATCGCAC | 59.552 | 55.000 | 11.96 | 0.00 | 45.35 | 5.34 |
3103 | 6617 | 1.442769 | GTGTTCCATGTGATCGCACT | 58.557 | 50.000 | 11.96 | 0.00 | 45.36 | 4.40 |
3104 | 6618 | 2.616960 | GTGTTCCATGTGATCGCACTA | 58.383 | 47.619 | 11.96 | 0.00 | 45.36 | 2.74 |
3105 | 6619 | 3.198068 | GTGTTCCATGTGATCGCACTAT | 58.802 | 45.455 | 11.96 | 0.00 | 45.36 | 2.12 |
3106 | 6620 | 3.246226 | GTGTTCCATGTGATCGCACTATC | 59.754 | 47.826 | 11.96 | 2.60 | 45.36 | 2.08 |
3107 | 6621 | 3.132824 | TGTTCCATGTGATCGCACTATCT | 59.867 | 43.478 | 11.96 | 0.00 | 45.36 | 1.98 |
3108 | 6622 | 4.340950 | TGTTCCATGTGATCGCACTATCTA | 59.659 | 41.667 | 11.96 | 0.00 | 45.36 | 1.98 |
3109 | 6623 | 4.773323 | TCCATGTGATCGCACTATCTAG | 57.227 | 45.455 | 11.96 | 0.00 | 45.36 | 2.43 |
3110 | 6624 | 4.145052 | TCCATGTGATCGCACTATCTAGT | 58.855 | 43.478 | 11.96 | 0.00 | 45.36 | 2.57 |
3111 | 6625 | 4.584743 | TCCATGTGATCGCACTATCTAGTT | 59.415 | 41.667 | 11.96 | 0.00 | 45.36 | 2.24 |
3112 | 6626 | 4.683320 | CCATGTGATCGCACTATCTAGTTG | 59.317 | 45.833 | 11.96 | 2.45 | 45.36 | 3.16 |
3113 | 6627 | 4.983671 | TGTGATCGCACTATCTAGTTGT | 57.016 | 40.909 | 4.45 | 0.00 | 45.36 | 3.32 |
3114 | 6628 | 4.672409 | TGTGATCGCACTATCTAGTTGTG | 58.328 | 43.478 | 4.45 | 7.71 | 45.36 | 3.33 |
3115 | 6629 | 4.398044 | TGTGATCGCACTATCTAGTTGTGA | 59.602 | 41.667 | 4.45 | 8.58 | 45.36 | 3.58 |
3116 | 6630 | 5.067805 | TGTGATCGCACTATCTAGTTGTGAT | 59.932 | 40.000 | 4.45 | 11.88 | 45.36 | 3.06 |
3117 | 6631 | 6.262273 | TGTGATCGCACTATCTAGTTGTGATA | 59.738 | 38.462 | 4.45 | 0.00 | 45.36 | 2.15 |
3118 | 6632 | 6.799441 | GTGATCGCACTATCTAGTTGTGATAG | 59.201 | 42.308 | 0.16 | 8.64 | 45.21 | 2.08 |
3119 | 6633 | 5.690997 | TCGCACTATCTAGTTGTGATAGG | 57.309 | 43.478 | 13.21 | 5.71 | 44.46 | 2.57 |
3120 | 6634 | 5.374071 | TCGCACTATCTAGTTGTGATAGGA | 58.626 | 41.667 | 13.21 | 1.72 | 44.46 | 2.94 |
3121 | 6635 | 6.004574 | TCGCACTATCTAGTTGTGATAGGAT | 58.995 | 40.000 | 13.21 | 0.00 | 44.46 | 3.24 |
3122 | 6636 | 6.072452 | TCGCACTATCTAGTTGTGATAGGATG | 60.072 | 42.308 | 13.21 | 6.43 | 44.46 | 3.51 |
3123 | 6637 | 6.072452 | CGCACTATCTAGTTGTGATAGGATGA | 60.072 | 42.308 | 13.21 | 0.00 | 44.46 | 2.92 |
3124 | 6638 | 7.362487 | CGCACTATCTAGTTGTGATAGGATGAT | 60.362 | 40.741 | 13.21 | 0.00 | 44.46 | 2.45 |
3153 | 6667 | 2.818130 | ACATTGCGTGATTTTGGCTT | 57.182 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3157 | 6671 | 5.053145 | ACATTGCGTGATTTTGGCTTAAAA | 58.947 | 33.333 | 2.73 | 2.73 | 42.10 | 1.52 |
3158 | 6672 | 5.177327 | ACATTGCGTGATTTTGGCTTAAAAG | 59.823 | 36.000 | 5.82 | 0.00 | 41.26 | 2.27 |
3159 | 6673 | 4.314740 | TGCGTGATTTTGGCTTAAAAGT | 57.685 | 36.364 | 5.82 | 0.00 | 41.26 | 2.66 |
3160 | 6674 | 4.047822 | TGCGTGATTTTGGCTTAAAAGTG | 58.952 | 39.130 | 5.82 | 0.00 | 41.26 | 3.16 |
3161 | 6675 | 4.048504 | GCGTGATTTTGGCTTAAAAGTGT | 58.951 | 39.130 | 5.82 | 0.00 | 41.26 | 3.55 |
3162 | 6676 | 4.506288 | GCGTGATTTTGGCTTAAAAGTGTT | 59.494 | 37.500 | 5.82 | 0.00 | 41.26 | 3.32 |
3163 | 6677 | 5.006261 | GCGTGATTTTGGCTTAAAAGTGTTT | 59.994 | 36.000 | 5.82 | 0.00 | 41.26 | 2.83 |
3164 | 6678 | 6.199342 | GCGTGATTTTGGCTTAAAAGTGTTTA | 59.801 | 34.615 | 5.82 | 0.00 | 41.26 | 2.01 |
3165 | 6679 | 7.095816 | GCGTGATTTTGGCTTAAAAGTGTTTAT | 60.096 | 33.333 | 5.82 | 0.00 | 41.26 | 1.40 |
3166 | 6680 | 8.760569 | CGTGATTTTGGCTTAAAAGTGTTTATT | 58.239 | 29.630 | 5.82 | 0.00 | 41.26 | 1.40 |
3167 | 6681 | 9.862585 | GTGATTTTGGCTTAAAAGTGTTTATTG | 57.137 | 29.630 | 5.82 | 0.00 | 41.26 | 1.90 |
3168 | 6682 | 9.606631 | TGATTTTGGCTTAAAAGTGTTTATTGT | 57.393 | 25.926 | 5.82 | 0.00 | 41.26 | 2.71 |
3169 | 6683 | 9.862585 | GATTTTGGCTTAAAAGTGTTTATTGTG | 57.137 | 29.630 | 5.82 | 0.00 | 41.26 | 3.33 |
3170 | 6684 | 9.606631 | ATTTTGGCTTAAAAGTGTTTATTGTGA | 57.393 | 25.926 | 5.82 | 0.00 | 41.26 | 3.58 |
3171 | 6685 | 7.995463 | TTGGCTTAAAAGTGTTTATTGTGAC | 57.005 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3172 | 6686 | 7.101652 | TGGCTTAAAAGTGTTTATTGTGACA | 57.898 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3173 | 6687 | 7.548097 | TGGCTTAAAAGTGTTTATTGTGACAA | 58.452 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
3174 | 6688 | 8.200792 | TGGCTTAAAAGTGTTTATTGTGACAAT | 58.799 | 29.630 | 15.80 | 15.80 | 0.00 | 2.71 |
3175 | 6689 | 8.487176 | GGCTTAAAAGTGTTTATTGTGACAATG | 58.513 | 33.333 | 20.29 | 0.56 | 0.00 | 2.82 |
3176 | 6690 | 8.487176 | GCTTAAAAGTGTTTATTGTGACAATGG | 58.513 | 33.333 | 20.29 | 0.00 | 0.00 | 3.16 |
3177 | 6691 | 9.528018 | CTTAAAAGTGTTTATTGTGACAATGGT | 57.472 | 29.630 | 20.29 | 0.00 | 0.00 | 3.55 |
3178 | 6692 | 7.769272 | AAAAGTGTTTATTGTGACAATGGTG | 57.231 | 32.000 | 20.29 | 0.00 | 0.00 | 4.17 |
3179 | 6693 | 6.463995 | AAGTGTTTATTGTGACAATGGTGT | 57.536 | 33.333 | 20.29 | 0.00 | 42.10 | 4.16 |
3180 | 6694 | 6.463995 | AGTGTTTATTGTGACAATGGTGTT | 57.536 | 33.333 | 20.29 | 0.00 | 38.41 | 3.32 |
3181 | 6695 | 7.575414 | AGTGTTTATTGTGACAATGGTGTTA | 57.425 | 32.000 | 20.29 | 0.00 | 38.41 | 2.41 |
3182 | 6696 | 7.422399 | AGTGTTTATTGTGACAATGGTGTTAC | 58.578 | 34.615 | 20.29 | 11.25 | 42.96 | 2.50 |
3196 | 6710 | 5.776173 | TGGTGTTACATTGGTACTTTTGG | 57.224 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
3197 | 6711 | 4.038162 | TGGTGTTACATTGGTACTTTTGGC | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
3198 | 6712 | 4.279922 | GGTGTTACATTGGTACTTTTGGCT | 59.720 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
3199 | 6713 | 5.474189 | GGTGTTACATTGGTACTTTTGGCTA | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 3.93 |
3200 | 6714 | 6.016108 | GGTGTTACATTGGTACTTTTGGCTAA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
3201 | 6715 | 7.427214 | GTGTTACATTGGTACTTTTGGCTAAA | 58.573 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
3202 | 6716 | 7.921745 | GTGTTACATTGGTACTTTTGGCTAAAA | 59.078 | 33.333 | 7.80 | 7.80 | 34.75 | 1.52 |
3283 | 6846 | 4.717233 | TGATTTGCTTTGTGACTTGTGT | 57.283 | 36.364 | 0.00 | 0.00 | 0.00 | 3.72 |
3284 | 6847 | 5.070770 | TGATTTGCTTTGTGACTTGTGTT | 57.929 | 34.783 | 0.00 | 0.00 | 0.00 | 3.32 |
3285 | 6848 | 4.863689 | TGATTTGCTTTGTGACTTGTGTTG | 59.136 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
3286 | 6849 | 4.511617 | TTTGCTTTGTGACTTGTGTTGA | 57.488 | 36.364 | 0.00 | 0.00 | 0.00 | 3.18 |
3335 | 6920 | 2.928116 | CCCGTTCACGAGTATTTCTTCC | 59.072 | 50.000 | 0.00 | 0.00 | 43.02 | 3.46 |
3361 | 7757 | 4.953579 | GCAAAATGGAAAGATGGGGTACTA | 59.046 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
3441 | 7837 | 8.204886 | CGGAATCGAAGCAGATTTGATATGCA | 62.205 | 42.308 | 9.81 | 0.00 | 43.55 | 3.96 |
3450 | 7846 | 4.034858 | CAGATTTGATATGCACACTTCGCT | 59.965 | 41.667 | 0.00 | 0.00 | 0.00 | 4.93 |
3523 | 9031 | 4.810191 | TGTGTTTGGCAGGTTAACTTTT | 57.190 | 36.364 | 5.42 | 0.00 | 0.00 | 2.27 |
3570 | 9196 | 8.544622 | TCAAGTCCCAGTTGAAACATACATATA | 58.455 | 33.333 | 0.00 | 0.00 | 34.83 | 0.86 |
3616 | 9242 | 2.565834 | GGCATAAATAGGCCCGAGTCTA | 59.434 | 50.000 | 0.00 | 0.00 | 46.75 | 2.59 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 2.096819 | TCTTGTTCGTCCAGTGCAAAAC | 59.903 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
3 | 4 | 2.360844 | TCTTGTTCGTCCAGTGCAAAA | 58.639 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
4 | 5 | 2.031258 | TCTTGTTCGTCCAGTGCAAA | 57.969 | 45.000 | 0.00 | 0.00 | 0.00 | 3.68 |
5 | 6 | 1.872952 | CATCTTGTTCGTCCAGTGCAA | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
7 | 8 | 0.798776 | CCATCTTGTTCGTCCAGTGC | 59.201 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
8 | 9 | 1.800586 | CACCATCTTGTTCGTCCAGTG | 59.199 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
10 | 11 | 1.442769 | CCACCATCTTGTTCGTCCAG | 58.557 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
11 | 12 | 0.036164 | CCCACCATCTTGTTCGTCCA | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
13 | 14 | 2.009774 | CATCCCACCATCTTGTTCGTC | 58.990 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
14 | 15 | 1.950484 | GCATCCCACCATCTTGTTCGT | 60.950 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
15 | 16 | 0.734889 | GCATCCCACCATCTTGTTCG | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
16 | 17 | 1.747355 | CAGCATCCCACCATCTTGTTC | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
17 | 18 | 1.843368 | CAGCATCCCACCATCTTGTT | 58.157 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
18 | 19 | 0.682209 | GCAGCATCCCACCATCTTGT | 60.682 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
19 | 20 | 0.395311 | AGCAGCATCCCACCATCTTG | 60.395 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
20 | 21 | 0.333993 | AAGCAGCATCCCACCATCTT | 59.666 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
21 | 22 | 0.106819 | GAAGCAGCATCCCACCATCT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
22 | 23 | 0.106819 | AGAAGCAGCATCCCACCATC | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
25 | 26 | 2.413142 | GCAGAAGCAGCATCCCACC | 61.413 | 63.158 | 0.00 | 0.00 | 41.58 | 4.61 |
44 | 45 | 0.792640 | CGACGCACTCTGCAAAGATT | 59.207 | 50.000 | 0.00 | 0.00 | 45.36 | 2.40 |
45 | 46 | 0.038251 | TCGACGCACTCTGCAAAGAT | 60.038 | 50.000 | 0.00 | 0.00 | 45.36 | 2.40 |
46 | 47 | 0.939577 | GTCGACGCACTCTGCAAAGA | 60.940 | 55.000 | 0.00 | 0.00 | 45.36 | 2.52 |
47 | 48 | 1.488957 | GTCGACGCACTCTGCAAAG | 59.511 | 57.895 | 0.00 | 0.00 | 45.36 | 2.77 |
49 | 50 | 2.120355 | TACGTCGACGCACTCTGCAA | 62.120 | 55.000 | 35.92 | 8.88 | 45.36 | 4.08 |
51 | 52 | 1.863880 | CTACGTCGACGCACTCTGC | 60.864 | 63.158 | 35.92 | 0.00 | 44.43 | 4.26 |
52 | 53 | 1.863880 | GCTACGTCGACGCACTCTG | 60.864 | 63.158 | 35.92 | 19.81 | 44.43 | 3.35 |
53 | 54 | 0.738762 | TAGCTACGTCGACGCACTCT | 60.739 | 55.000 | 35.92 | 26.83 | 44.43 | 3.24 |
54 | 55 | 0.304098 | ATAGCTACGTCGACGCACTC | 59.696 | 55.000 | 35.92 | 21.97 | 44.43 | 3.51 |
55 | 56 | 0.731417 | AATAGCTACGTCGACGCACT | 59.269 | 50.000 | 35.92 | 29.52 | 44.43 | 4.40 |
56 | 57 | 1.542544 | AAATAGCTACGTCGACGCAC | 58.457 | 50.000 | 35.92 | 24.75 | 44.43 | 5.34 |
57 | 58 | 2.267188 | AAAATAGCTACGTCGACGCA | 57.733 | 45.000 | 35.92 | 24.21 | 44.43 | 5.24 |
58 | 59 | 4.943508 | ATTAAAATAGCTACGTCGACGC | 57.056 | 40.909 | 35.92 | 20.85 | 44.43 | 5.19 |
60 | 61 | 6.817270 | TCCAATTAAAATAGCTACGTCGAC | 57.183 | 37.500 | 5.18 | 5.18 | 0.00 | 4.20 |
61 | 62 | 7.760794 | TCTTTCCAATTAAAATAGCTACGTCGA | 59.239 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
63 | 64 | 9.865484 | GATCTTTCCAATTAAAATAGCTACGTC | 57.135 | 33.333 | 0.00 | 0.00 | 0.00 | 4.34 |
92 | 93 | 7.766738 | TGATTAGCGGAACTATCACAATGTTAA | 59.233 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
178 | 184 | 3.243771 | ACGAGACAATTCAGAGGTTCGTT | 60.244 | 43.478 | 0.00 | 0.00 | 36.76 | 3.85 |
179 | 185 | 2.296471 | ACGAGACAATTCAGAGGTTCGT | 59.704 | 45.455 | 0.00 | 0.00 | 35.48 | 3.85 |
180 | 186 | 2.917971 | GACGAGACAATTCAGAGGTTCG | 59.082 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
181 | 187 | 3.675698 | GTGACGAGACAATTCAGAGGTTC | 59.324 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
182 | 188 | 3.322254 | AGTGACGAGACAATTCAGAGGTT | 59.678 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
198 | 204 | 0.793478 | CGTCCACGAGCTTAGTGACG | 60.793 | 60.000 | 20.47 | 20.71 | 41.83 | 4.35 |
240 | 256 | 1.131638 | TTCCGGATGGCTAGCTTCAT | 58.868 | 50.000 | 15.72 | 10.49 | 34.14 | 2.57 |
242 | 1279 | 1.943340 | CTTTTCCGGATGGCTAGCTTC | 59.057 | 52.381 | 15.72 | 11.78 | 34.14 | 3.86 |
564 | 1606 | 1.881925 | CGTTTGGCCAGGTCTGATTGA | 60.882 | 52.381 | 5.11 | 0.00 | 0.00 | 2.57 |
569 | 1611 | 2.672996 | CCCGTTTGGCCAGGTCTG | 60.673 | 66.667 | 5.11 | 0.00 | 0.00 | 3.51 |
956 | 1998 | 3.912745 | AACGGGCCGGGCTAAACAG | 62.913 | 63.158 | 31.78 | 14.11 | 0.00 | 3.16 |
957 | 1999 | 3.494736 | AAACGGGCCGGGCTAAACA | 62.495 | 57.895 | 31.78 | 0.00 | 0.00 | 2.83 |
958 | 2000 | 2.674033 | AAACGGGCCGGGCTAAAC | 60.674 | 61.111 | 31.78 | 10.12 | 0.00 | 2.01 |
959 | 2001 | 2.673687 | CAAACGGGCCGGGCTAAA | 60.674 | 61.111 | 31.78 | 0.00 | 0.00 | 1.85 |
960 | 2002 | 4.726304 | CCAAACGGGCCGGGCTAA | 62.726 | 66.667 | 31.78 | 0.00 | 0.00 | 3.09 |
969 | 2011 | 1.741145 | GTGTATAACTGGCCAAACGGG | 59.259 | 52.381 | 7.01 | 0.00 | 40.85 | 5.28 |
970 | 2012 | 1.741145 | GGTGTATAACTGGCCAAACGG | 59.259 | 52.381 | 7.01 | 0.00 | 0.00 | 4.44 |
971 | 2013 | 1.741145 | GGGTGTATAACTGGCCAAACG | 59.259 | 52.381 | 7.01 | 0.00 | 0.00 | 3.60 |
972 | 2014 | 2.797786 | TGGGTGTATAACTGGCCAAAC | 58.202 | 47.619 | 7.01 | 0.69 | 0.00 | 2.93 |
973 | 2015 | 3.527507 | TTGGGTGTATAACTGGCCAAA | 57.472 | 42.857 | 7.01 | 0.00 | 28.22 | 3.28 |
974 | 2016 | 3.748645 | ATTGGGTGTATAACTGGCCAA | 57.251 | 42.857 | 7.01 | 0.00 | 33.71 | 4.52 |
975 | 2017 | 3.432467 | CGTATTGGGTGTATAACTGGCCA | 60.432 | 47.826 | 4.71 | 4.71 | 0.00 | 5.36 |
976 | 2018 | 3.135994 | CGTATTGGGTGTATAACTGGCC | 58.864 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
977 | 2019 | 3.805971 | GTCGTATTGGGTGTATAACTGGC | 59.194 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
978 | 2020 | 5.013568 | TGTCGTATTGGGTGTATAACTGG | 57.986 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
979 | 2021 | 5.050363 | GCATGTCGTATTGGGTGTATAACTG | 60.050 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
980 | 2022 | 5.054477 | GCATGTCGTATTGGGTGTATAACT | 58.946 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
981 | 2023 | 4.212636 | GGCATGTCGTATTGGGTGTATAAC | 59.787 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
982 | 2024 | 4.382291 | GGCATGTCGTATTGGGTGTATAA | 58.618 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
983 | 2025 | 3.244284 | GGGCATGTCGTATTGGGTGTATA | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 1.47 |
984 | 2026 | 2.486548 | GGGCATGTCGTATTGGGTGTAT | 60.487 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
985 | 2027 | 1.134340 | GGGCATGTCGTATTGGGTGTA | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
986 | 2028 | 0.393808 | GGGCATGTCGTATTGGGTGT | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
987 | 2029 | 1.436195 | CGGGCATGTCGTATTGGGTG | 61.436 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
988 | 2030 | 1.153249 | CGGGCATGTCGTATTGGGT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
989 | 2031 | 1.153249 | ACGGGCATGTCGTATTGGG | 60.153 | 57.895 | 13.05 | 0.00 | 39.22 | 4.12 |
990 | 2032 | 0.461163 | TGACGGGCATGTCGTATTGG | 60.461 | 55.000 | 14.30 | 0.00 | 41.87 | 3.16 |
991 | 2033 | 1.062002 | GTTGACGGGCATGTCGTATTG | 59.938 | 52.381 | 14.30 | 0.00 | 41.87 | 1.90 |
992 | 2034 | 1.365699 | GTTGACGGGCATGTCGTATT | 58.634 | 50.000 | 14.30 | 0.00 | 41.87 | 1.89 |
993 | 2035 | 0.461339 | GGTTGACGGGCATGTCGTAT | 60.461 | 55.000 | 14.30 | 0.00 | 41.87 | 3.06 |
994 | 2036 | 1.079681 | GGTTGACGGGCATGTCGTA | 60.080 | 57.895 | 14.30 | 0.48 | 41.87 | 3.43 |
1441 | 2502 | 0.824109 | CTCCACATGCCGAGGTAGAA | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1850 | 2917 | 0.255890 | ACCAGGCGCCTTAATGATGT | 59.744 | 50.000 | 30.60 | 12.30 | 0.00 | 3.06 |
1857 | 2924 | 1.298667 | GGAGAAACCAGGCGCCTTA | 59.701 | 57.895 | 30.60 | 0.00 | 38.79 | 2.69 |
1969 | 3068 | 4.106925 | CTGTCCCAGGCTCCCAGC | 62.107 | 72.222 | 0.00 | 0.00 | 41.46 | 4.85 |
1970 | 3069 | 3.406200 | CCTGTCCCAGGCTCCCAG | 61.406 | 72.222 | 0.00 | 0.00 | 45.13 | 4.45 |
2126 | 5421 | 1.888391 | GCCAAAAGAAGAGTCAGGGGG | 60.888 | 57.143 | 0.00 | 0.00 | 0.00 | 5.40 |
2677 | 6161 | 3.300667 | CTGCCAACTTCGACGCTGC | 62.301 | 63.158 | 0.00 | 0.00 | 0.00 | 5.25 |
2744 | 6256 | 5.065090 | CACATGAAACACATACACGATGGAT | 59.935 | 40.000 | 0.00 | 0.00 | 40.18 | 3.41 |
2745 | 6257 | 4.391523 | CACATGAAACACATACACGATGGA | 59.608 | 41.667 | 0.00 | 0.00 | 40.18 | 3.41 |
2746 | 6258 | 4.391523 | TCACATGAAACACATACACGATGG | 59.608 | 41.667 | 0.00 | 0.00 | 40.18 | 3.51 |
2747 | 6259 | 5.529014 | TCACATGAAACACATACACGATG | 57.471 | 39.130 | 0.00 | 0.00 | 41.79 | 3.84 |
2748 | 6260 | 6.741992 | AATCACATGAAACACATACACGAT | 57.258 | 33.333 | 0.00 | 0.00 | 37.46 | 3.73 |
2749 | 6261 | 6.552859 | AAATCACATGAAACACATACACGA | 57.447 | 33.333 | 0.00 | 0.00 | 37.46 | 4.35 |
2750 | 6262 | 6.636447 | ACAAAATCACATGAAACACATACACG | 59.364 | 34.615 | 0.00 | 0.00 | 37.46 | 4.49 |
2773 | 6285 | 1.279496 | AGATCACAGCCTAGCCAACA | 58.721 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2777 | 6289 | 2.103771 | TCATCAAGATCACAGCCTAGCC | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
2975 | 6488 | 1.202279 | GCACACAATCACAGCACAACA | 60.202 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
2987 | 6501 | 5.353938 | GCATGAAGGAAATATGCACACAAT | 58.646 | 37.500 | 0.00 | 0.00 | 44.88 | 2.71 |
3026 | 6540 | 3.066291 | TGAAACACAGATATGGCGGTT | 57.934 | 42.857 | 0.00 | 0.00 | 0.00 | 4.44 |
3033 | 6547 | 5.007039 | GTGCGATCACATGAAACACAGATAT | 59.993 | 40.000 | 0.00 | 0.00 | 42.66 | 1.63 |
3035 | 6549 | 3.125829 | GTGCGATCACATGAAACACAGAT | 59.874 | 43.478 | 0.00 | 0.00 | 42.66 | 2.90 |
3054 | 6568 | 7.220741 | TCATCCTATCACAACTAGATAGTGC | 57.779 | 40.000 | 0.00 | 0.00 | 42.06 | 4.40 |
3065 | 6579 | 5.607939 | ACACCGTTATCATCCTATCACAA | 57.392 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
3082 | 6596 | 3.176821 | GTGCGATCACATGGAACACCG | 62.177 | 57.143 | 0.00 | 0.00 | 42.66 | 4.94 |
3083 | 6597 | 0.447801 | GTGCGATCACATGGAACACC | 59.552 | 55.000 | 0.00 | 0.00 | 42.66 | 4.16 |
3084 | 6598 | 1.442769 | AGTGCGATCACATGGAACAC | 58.557 | 50.000 | 0.00 | 3.11 | 45.49 | 3.32 |
3085 | 6599 | 3.132824 | AGATAGTGCGATCACATGGAACA | 59.867 | 43.478 | 0.00 | 0.00 | 45.49 | 3.18 |
3086 | 6600 | 3.722147 | AGATAGTGCGATCACATGGAAC | 58.278 | 45.455 | 0.00 | 0.00 | 45.49 | 3.62 |
3087 | 6601 | 4.584743 | ACTAGATAGTGCGATCACATGGAA | 59.415 | 41.667 | 0.00 | 0.00 | 45.49 | 3.53 |
3088 | 6602 | 4.145052 | ACTAGATAGTGCGATCACATGGA | 58.855 | 43.478 | 0.00 | 0.00 | 45.49 | 3.41 |
3089 | 6603 | 4.511617 | ACTAGATAGTGCGATCACATGG | 57.488 | 45.455 | 0.00 | 0.00 | 45.49 | 3.66 |
3090 | 6604 | 5.174579 | CACAACTAGATAGTGCGATCACATG | 59.825 | 44.000 | 0.00 | 0.00 | 45.49 | 3.21 |
3091 | 6605 | 5.067805 | TCACAACTAGATAGTGCGATCACAT | 59.932 | 40.000 | 0.00 | 0.00 | 45.49 | 3.21 |
3092 | 6606 | 4.398044 | TCACAACTAGATAGTGCGATCACA | 59.602 | 41.667 | 0.00 | 0.00 | 45.49 | 3.58 |
3093 | 6607 | 4.921547 | TCACAACTAGATAGTGCGATCAC | 58.078 | 43.478 | 0.00 | 0.00 | 43.44 | 3.06 |
3094 | 6608 | 5.774498 | ATCACAACTAGATAGTGCGATCA | 57.226 | 39.130 | 0.00 | 0.00 | 36.50 | 2.92 |
3095 | 6609 | 6.149640 | TCCTATCACAACTAGATAGTGCGATC | 59.850 | 42.308 | 0.00 | 0.00 | 42.06 | 3.69 |
3096 | 6610 | 6.004574 | TCCTATCACAACTAGATAGTGCGAT | 58.995 | 40.000 | 0.00 | 0.05 | 42.06 | 4.58 |
3097 | 6611 | 5.374071 | TCCTATCACAACTAGATAGTGCGA | 58.626 | 41.667 | 0.00 | 0.00 | 42.06 | 5.10 |
3098 | 6612 | 5.690997 | TCCTATCACAACTAGATAGTGCG | 57.309 | 43.478 | 0.00 | 0.00 | 42.06 | 5.34 |
3099 | 6613 | 7.220741 | TCATCCTATCACAACTAGATAGTGC | 57.779 | 40.000 | 0.00 | 0.00 | 42.06 | 4.40 |
3102 | 6616 | 9.995957 | CGTTATCATCCTATCACAACTAGATAG | 57.004 | 37.037 | 0.00 | 0.00 | 42.84 | 2.08 |
3103 | 6617 | 8.957466 | CCGTTATCATCCTATCACAACTAGATA | 58.043 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
3104 | 6618 | 7.451877 | ACCGTTATCATCCTATCACAACTAGAT | 59.548 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
3105 | 6619 | 6.776116 | ACCGTTATCATCCTATCACAACTAGA | 59.224 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
3106 | 6620 | 6.863645 | CACCGTTATCATCCTATCACAACTAG | 59.136 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
3107 | 6621 | 6.322969 | ACACCGTTATCATCCTATCACAACTA | 59.677 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
3108 | 6622 | 5.128827 | ACACCGTTATCATCCTATCACAACT | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3109 | 6623 | 5.357257 | ACACCGTTATCATCCTATCACAAC | 58.643 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
3110 | 6624 | 5.607939 | ACACCGTTATCATCCTATCACAA | 57.392 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
3111 | 6625 | 5.607939 | AACACCGTTATCATCCTATCACA | 57.392 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
3112 | 6626 | 6.509656 | TGTAACACCGTTATCATCCTATCAC | 58.490 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3113 | 6627 | 6.718522 | TGTAACACCGTTATCATCCTATCA | 57.281 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
3114 | 6628 | 7.360101 | GCAATGTAACACCGTTATCATCCTATC | 60.360 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
3115 | 6629 | 6.426937 | GCAATGTAACACCGTTATCATCCTAT | 59.573 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
3116 | 6630 | 5.756347 | GCAATGTAACACCGTTATCATCCTA | 59.244 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3117 | 6631 | 4.574828 | GCAATGTAACACCGTTATCATCCT | 59.425 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
3118 | 6632 | 4.551990 | CGCAATGTAACACCGTTATCATCC | 60.552 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
3119 | 6633 | 4.033587 | ACGCAATGTAACACCGTTATCATC | 59.966 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
3120 | 6634 | 3.936453 | ACGCAATGTAACACCGTTATCAT | 59.064 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
3121 | 6635 | 3.123790 | CACGCAATGTAACACCGTTATCA | 59.876 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
3122 | 6636 | 3.368539 | TCACGCAATGTAACACCGTTATC | 59.631 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
3123 | 6637 | 3.327626 | TCACGCAATGTAACACCGTTAT | 58.672 | 40.909 | 0.00 | 0.00 | 0.00 | 1.89 |
3124 | 6638 | 2.752121 | TCACGCAATGTAACACCGTTA | 58.248 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
3153 | 6667 | 8.470805 | ACACCATTGTCACAATAAACACTTTTA | 58.529 | 29.630 | 1.72 | 0.00 | 0.00 | 1.52 |
3157 | 6671 | 6.463995 | AACACCATTGTCACAATAAACACT | 57.536 | 33.333 | 1.72 | 0.00 | 33.55 | 3.55 |
3158 | 6672 | 7.197017 | TGTAACACCATTGTCACAATAAACAC | 58.803 | 34.615 | 1.72 | 0.00 | 33.55 | 3.32 |
3159 | 6673 | 7.334844 | TGTAACACCATTGTCACAATAAACA | 57.665 | 32.000 | 1.72 | 0.00 | 33.55 | 2.83 |
3160 | 6674 | 8.698854 | CAATGTAACACCATTGTCACAATAAAC | 58.301 | 33.333 | 1.72 | 0.00 | 44.24 | 2.01 |
3161 | 6675 | 7.869937 | CCAATGTAACACCATTGTCACAATAAA | 59.130 | 33.333 | 1.72 | 0.00 | 46.61 | 1.40 |
3162 | 6676 | 7.014711 | ACCAATGTAACACCATTGTCACAATAA | 59.985 | 33.333 | 1.72 | 0.00 | 46.61 | 1.40 |
3163 | 6677 | 6.491745 | ACCAATGTAACACCATTGTCACAATA | 59.508 | 34.615 | 1.72 | 0.00 | 46.61 | 1.90 |
3164 | 6678 | 5.304101 | ACCAATGTAACACCATTGTCACAAT | 59.696 | 36.000 | 0.00 | 0.00 | 46.61 | 2.71 |
3165 | 6679 | 4.646945 | ACCAATGTAACACCATTGTCACAA | 59.353 | 37.500 | 11.62 | 0.00 | 46.61 | 3.33 |
3166 | 6680 | 4.211125 | ACCAATGTAACACCATTGTCACA | 58.789 | 39.130 | 11.62 | 0.00 | 46.61 | 3.58 |
3167 | 6681 | 4.846779 | ACCAATGTAACACCATTGTCAC | 57.153 | 40.909 | 11.62 | 0.00 | 46.61 | 3.67 |
3168 | 6682 | 5.626142 | AGTACCAATGTAACACCATTGTCA | 58.374 | 37.500 | 11.62 | 0.00 | 46.61 | 3.58 |
3169 | 6683 | 6.569179 | AAGTACCAATGTAACACCATTGTC | 57.431 | 37.500 | 11.62 | 4.07 | 46.61 | 3.18 |
3170 | 6684 | 6.969993 | AAAGTACCAATGTAACACCATTGT | 57.030 | 33.333 | 11.62 | 4.52 | 46.61 | 2.71 |
3172 | 6686 | 6.740122 | GCCAAAAGTACCAATGTAACACCATT | 60.740 | 38.462 | 0.00 | 0.00 | 35.45 | 3.16 |
3173 | 6687 | 5.279256 | GCCAAAAGTACCAATGTAACACCAT | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3174 | 6688 | 4.038162 | GCCAAAAGTACCAATGTAACACCA | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3175 | 6689 | 4.279922 | AGCCAAAAGTACCAATGTAACACC | 59.720 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
3176 | 6690 | 5.447624 | AGCCAAAAGTACCAATGTAACAC | 57.552 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
3177 | 6691 | 7.584122 | TTTAGCCAAAAGTACCAATGTAACA | 57.416 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3178 | 6692 | 8.874744 | TTTTTAGCCAAAAGTACCAATGTAAC | 57.125 | 30.769 | 0.00 | 0.00 | 35.15 | 2.50 |
3200 | 6714 | 6.930731 | AGGCGGTGTCATAATAAACATTTTT | 58.069 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3201 | 6715 | 6.524101 | AGGCGGTGTCATAATAAACATTTT | 57.476 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3202 | 6716 | 6.524101 | AAGGCGGTGTCATAATAAACATTT | 57.476 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
3335 | 6920 | 2.093341 | CCCCATCTTTCCATTTTGCAGG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3361 | 7757 | 1.206849 | CAAACAGCAAACCACCCAAGT | 59.793 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3441 | 7837 | 0.593128 | GTCAATTGCCAGCGAAGTGT | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3450 | 7846 | 3.526931 | TTTCAAAACCGTCAATTGCCA | 57.473 | 38.095 | 0.00 | 0.00 | 0.00 | 4.92 |
3523 | 9031 | 5.875224 | TGATGAATCAAACTAACCCTGACA | 58.125 | 37.500 | 0.00 | 0.00 | 33.08 | 3.58 |
3570 | 9196 | 3.494048 | GGAGTCCATTGATCGCTCATCTT | 60.494 | 47.826 | 3.60 | 0.00 | 31.92 | 2.40 |
3616 | 9242 | 6.990349 | CGTTGTTGATGGTCCTATAATAAGGT | 59.010 | 38.462 | 0.00 | 0.00 | 37.91 | 3.50 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.