Multiple sequence alignment - TraesCS3B01G462400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G462400 chr3B 100.000 3088 0 0 1 3088 705452175 705455262 0.000000e+00 5703
1 TraesCS3B01G462400 chr3B 85.007 727 74 10 1 717 705309981 705310682 0.000000e+00 706
2 TraesCS3B01G462400 chr3B 100.000 366 0 0 3305 3670 705455479 705455844 0.000000e+00 676
3 TraesCS3B01G462400 chr3B 81.199 734 109 23 9 727 293792812 293793531 6.880000e-157 564
4 TraesCS3B01G462400 chr3B 79.142 513 77 15 2396 2890 705154682 705155182 9.830000e-86 327
5 TraesCS3B01G462400 chr3B 86.175 217 28 2 2470 2685 705567883 705568098 2.200000e-57 233
6 TraesCS3B01G462400 chr3A 90.479 1460 115 12 1482 2935 669180410 669181851 0.000000e+00 1905
7 TraesCS3B01G462400 chr3A 83.474 593 64 7 850 1433 669179825 669180392 4.200000e-144 521
8 TraesCS3B01G462400 chr3A 86.257 342 46 1 3305 3646 669182264 669182604 1.610000e-98 370
9 TraesCS3B01G462400 chr3A 78.647 473 71 14 2470 2923 668878331 668878792 1.670000e-73 287
10 TraesCS3B01G462400 chr3A 86.047 215 30 0 2464 2678 669525779 669525993 7.930000e-57 231
11 TraesCS3B01G462400 chr3A 87.629 194 24 0 2464 2657 667951059 667951252 3.690000e-55 226
12 TraesCS3B01G462400 chr3A 95.402 87 3 1 3003 3088 669182086 669182172 1.780000e-28 137
13 TraesCS3B01G462400 chr3A 85.606 132 13 2 728 853 669177873 669178004 2.300000e-27 134
14 TraesCS3B01G462400 chr2D 82.917 720 109 11 9 722 367171762 367171051 1.440000e-178 636
15 TraesCS3B01G462400 chr2D 81.528 720 109 21 9 714 212782501 212783210 4.110000e-159 571
16 TraesCS3B01G462400 chr6D 82.782 726 107 11 1 717 219157272 219156556 1.860000e-177 632
17 TraesCS3B01G462400 chr4A 82.296 723 110 12 1 714 429241033 429240320 8.710000e-171 610
18 TraesCS3B01G462400 chr4D 84.227 634 83 13 1 627 222962772 222962149 5.240000e-168 601
19 TraesCS3B01G462400 chr4D 80.894 738 116 22 1 724 199831437 199832163 3.200000e-155 558
20 TraesCS3B01G462400 chr1D 81.450 717 112 15 1 705 285065487 285064780 5.320000e-158 568
21 TraesCS3B01G462400 chr3D 79.623 530 75 18 2396 2905 532956893 532957409 2.100000e-92 350
22 TraesCS3B01G462400 chr3D 87.940 199 22 2 2480 2677 533677860 533678057 2.200000e-57 233
23 TraesCS3B01G462400 chr3D 85.116 215 32 0 2464 2678 533670316 533670530 1.720000e-53 220
24 TraesCS3B01G462400 chr3D 75.971 412 64 21 1960 2359 532956415 532956803 2.910000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G462400 chr3B 705452175 705455844 3669 False 3189.5 5703 100.0000 1 3670 2 chr3B.!!$F5 3669
1 TraesCS3B01G462400 chr3B 705309981 705310682 701 False 706.0 706 85.0070 1 717 1 chr3B.!!$F3 716
2 TraesCS3B01G462400 chr3B 293792812 293793531 719 False 564.0 564 81.1990 9 727 1 chr3B.!!$F1 718
3 TraesCS3B01G462400 chr3B 705154682 705155182 500 False 327.0 327 79.1420 2396 2890 1 chr3B.!!$F2 494
4 TraesCS3B01G462400 chr3A 669177873 669182604 4731 False 613.4 1905 88.2436 728 3646 5 chr3A.!!$F4 2918
5 TraesCS3B01G462400 chr2D 367171051 367171762 711 True 636.0 636 82.9170 9 722 1 chr2D.!!$R1 713
6 TraesCS3B01G462400 chr2D 212782501 212783210 709 False 571.0 571 81.5280 9 714 1 chr2D.!!$F1 705
7 TraesCS3B01G462400 chr6D 219156556 219157272 716 True 632.0 632 82.7820 1 717 1 chr6D.!!$R1 716
8 TraesCS3B01G462400 chr4A 429240320 429241033 713 True 610.0 610 82.2960 1 714 1 chr4A.!!$R1 713
9 TraesCS3B01G462400 chr4D 222962149 222962772 623 True 601.0 601 84.2270 1 627 1 chr4D.!!$R1 626
10 TraesCS3B01G462400 chr4D 199831437 199832163 726 False 558.0 558 80.8940 1 724 1 chr4D.!!$F1 723
11 TraesCS3B01G462400 chr1D 285064780 285065487 707 True 568.0 568 81.4500 1 705 1 chr1D.!!$R1 704
12 TraesCS3B01G462400 chr3D 532956415 532957409 994 False 265.0 350 77.7970 1960 2905 2 chr3D.!!$F3 945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 2743 0.397187 ATGCTGCTAGCTCAGGATGG 59.603 55.0 17.23 0.0 42.37 3.51 F
1604 3467 0.107703 CCGGTTCTTGGCTGCTCATA 60.108 55.0 0.00 0.0 0.00 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 4123 0.698818 GGAGCTTCCCCTGGAAAGAA 59.301 55.0 11.53 3.97 41.54 2.52 R
3573 5686 0.105658 AGAGGAAGCAGCGGGGTATA 60.106 55.0 0.00 0.00 0.00 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.637872 CCCTACTCCTTCTTTGTGGTGA 59.362 50.000 0.00 0.00 0.00 4.02
61 62 1.303236 TGGTGAATTGGCCTCACGG 60.303 57.895 15.29 0.00 43.45 4.94
86 88 4.353777 AGGCTGAGGATGAACTAGTACAA 58.646 43.478 0.00 0.00 0.00 2.41
130 133 3.119352 GCTTTGGTGATGAAGGTGGAATC 60.119 47.826 0.00 0.00 0.00 2.52
134 137 3.709141 TGGTGATGAAGGTGGAATCGATA 59.291 43.478 0.00 0.00 0.00 2.92
262 271 7.235812 AGGGGACAAATAGTACATCTTATCCTC 59.764 40.741 0.00 0.00 30.17 3.71
311 320 4.409218 GGTCGTGACGCAGCGGTA 62.409 66.667 21.15 4.21 0.00 4.02
337 346 1.620819 GGCGATGACATCCATCCTACT 59.379 52.381 9.87 0.00 46.98 2.57
343 352 2.042464 GACATCCATCCTACTGAGCCA 58.958 52.381 0.00 0.00 0.00 4.75
345 354 1.055040 ATCCATCCTACTGAGCCAGC 58.945 55.000 2.50 0.00 34.37 4.85
418 433 4.742201 GCGCTCGTCCTTGCTCCA 62.742 66.667 0.00 0.00 0.00 3.86
530 545 2.289444 GCCGGCTACCTGCATAGAAATA 60.289 50.000 22.15 0.00 45.15 1.40
537 552 4.357918 ACCTGCATAGAAATATCCGCTT 57.642 40.909 0.00 0.00 0.00 4.68
570 588 1.107114 CTGAAGAAGCCGCTCCTCTA 58.893 55.000 0.00 0.00 0.00 2.43
674 696 2.440796 CCATTGATGGGCCAGCGT 60.441 61.111 18.16 5.39 44.31 5.07
706 728 2.366435 GCAGGCCTAGGTACCCCA 60.366 66.667 3.98 0.00 0.00 4.96
709 731 0.765510 CAGGCCTAGGTACCCCAATC 59.234 60.000 3.98 0.00 0.00 2.67
739 762 4.629200 CACTGAGAGTAATGCAAGGAACTC 59.371 45.833 11.17 11.17 38.49 3.01
803 832 2.743636 TCTGGCAAGAAGTAACTCGG 57.256 50.000 0.00 0.00 0.00 4.63
805 834 2.029290 TCTGGCAAGAAGTAACTCGGTC 60.029 50.000 0.00 0.00 0.00 4.79
806 835 1.689813 TGGCAAGAAGTAACTCGGTCA 59.310 47.619 0.00 0.00 0.00 4.02
807 836 2.301870 TGGCAAGAAGTAACTCGGTCAT 59.698 45.455 0.00 0.00 0.00 3.06
819 848 1.398390 CTCGGTCATGCTACTTTTGGC 59.602 52.381 0.00 0.00 0.00 4.52
830 859 6.302535 TGCTACTTTTGGCAGGTAGTAATA 57.697 37.500 18.43 5.83 36.34 0.98
833 862 6.990349 GCTACTTTTGGCAGGTAGTAATATGA 59.010 38.462 18.43 0.00 36.34 2.15
842 871 4.750098 CAGGTAGTAATATGACGCCAAAGG 59.250 45.833 8.85 0.00 0.00 3.11
886 2739 3.733806 GCATGCTGCTAGCTCAGG 58.266 61.111 17.23 15.71 42.97 3.86
890 2743 0.397187 ATGCTGCTAGCTCAGGATGG 59.603 55.000 17.23 0.00 42.37 3.51
951 2813 3.116746 TCCCCTACATATCTTGCTCCTCA 60.117 47.826 0.00 0.00 0.00 3.86
954 2816 5.664908 CCCCTACATATCTTGCTCCTCATAT 59.335 44.000 0.00 0.00 0.00 1.78
963 2825 5.847304 TCTTGCTCCTCATATGTATGTGAC 58.153 41.667 1.90 0.00 35.26 3.67
964 2826 4.243007 TGCTCCTCATATGTATGTGACG 57.757 45.455 1.90 0.00 35.26 4.35
965 2827 3.636764 TGCTCCTCATATGTATGTGACGT 59.363 43.478 1.90 0.00 35.26 4.34
966 2828 3.983988 GCTCCTCATATGTATGTGACGTG 59.016 47.826 1.90 0.00 35.26 4.49
974 2836 2.799017 TGTATGTGACGTGTCCTACCT 58.201 47.619 0.00 0.00 0.00 3.08
995 2857 2.785703 GGTCCTACCCCCTCCTGT 59.214 66.667 0.00 0.00 30.04 4.00
1014 2876 1.089112 TGAAGATGAACATGCGGCAG 58.911 50.000 9.25 3.35 0.00 4.85
1018 2880 2.040213 GATGAACATGCGGCAGACGG 62.040 60.000 9.25 0.42 44.51 4.79
1082 2944 2.669569 GCAACCGCAGAAGCAGGA 60.670 61.111 0.00 0.00 42.27 3.86
1089 2951 1.676635 GCAGAAGCAGGATGTGGCA 60.677 57.895 0.00 0.00 41.58 4.92
1095 2957 2.357836 CAGGATGTGGCAGGCCTT 59.642 61.111 0.00 0.00 36.94 4.35
1097 2959 2.036256 GGATGTGGCAGGCCTTGT 59.964 61.111 0.00 0.00 36.94 3.16
1116 2978 2.668632 GCAGGTGTCGATCCCCAA 59.331 61.111 6.08 0.00 0.00 4.12
1125 2987 1.133025 GTCGATCCCCAATTTGTGCTG 59.867 52.381 0.00 0.00 0.00 4.41
1137 2999 2.022346 GTGCTGATGCGCGACATG 59.978 61.111 12.10 3.45 39.84 3.21
1138 3000 2.125592 TGCTGATGCGCGACATGA 60.126 55.556 12.10 6.39 39.84 3.07
1157 3019 5.047306 ACATGATCCGACAGAAGTTGTAAGA 60.047 40.000 0.00 0.00 41.05 2.10
1159 3021 5.227908 TGATCCGACAGAAGTTGTAAGAAC 58.772 41.667 0.00 0.00 41.05 3.01
1182 3044 0.387565 TTGCTTTTCTTTGCCCCGAC 59.612 50.000 0.00 0.00 0.00 4.79
1201 3063 6.591750 CCGACTGGGAATGAGTATAATACT 57.408 41.667 0.00 0.00 39.13 2.12
1202 3064 6.994221 CCGACTGGGAATGAGTATAATACTT 58.006 40.000 0.00 0.00 37.23 2.24
1203 3065 7.091443 CCGACTGGGAATGAGTATAATACTTC 58.909 42.308 0.00 0.00 37.23 3.01
1204 3066 6.802348 CGACTGGGAATGAGTATAATACTTCG 59.198 42.308 0.00 0.00 39.59 3.79
1224 3086 3.198635 TCGAGAAAAATCATGCTCCCTCT 59.801 43.478 0.00 0.00 0.00 3.69
1230 3092 0.975135 ATCATGCTCCCTCTGATCCG 59.025 55.000 0.00 0.00 0.00 4.18
1243 3105 7.046033 TCCCTCTGATCCGAAATAAGTTTTAC 58.954 38.462 0.00 0.00 0.00 2.01
1259 3121 9.783256 ATAAGTTTTACGATCAAAGTTAATGGC 57.217 29.630 7.84 0.00 34.31 4.40
1260 3122 6.617879 AGTTTTACGATCAAAGTTAATGGCC 58.382 36.000 0.00 0.00 0.00 5.36
1261 3123 6.433093 AGTTTTACGATCAAAGTTAATGGCCT 59.567 34.615 3.32 0.00 0.00 5.19
1262 3124 7.608761 AGTTTTACGATCAAAGTTAATGGCCTA 59.391 33.333 3.32 0.00 0.00 3.93
1263 3125 7.548196 TTTACGATCAAAGTTAATGGCCTAG 57.452 36.000 3.32 0.00 0.00 3.02
1264 3126 5.353394 ACGATCAAAGTTAATGGCCTAGA 57.647 39.130 3.32 0.00 0.00 2.43
1265 3127 5.930135 ACGATCAAAGTTAATGGCCTAGAT 58.070 37.500 3.32 0.00 0.00 1.98
1266 3128 5.992217 ACGATCAAAGTTAATGGCCTAGATC 59.008 40.000 3.32 3.03 0.00 2.75
1267 3129 6.183361 ACGATCAAAGTTAATGGCCTAGATCT 60.183 38.462 3.32 0.00 0.00 2.75
1268 3130 7.015292 ACGATCAAAGTTAATGGCCTAGATCTA 59.985 37.037 3.32 1.69 0.00 1.98
1269 3131 7.872993 CGATCAAAGTTAATGGCCTAGATCTAA 59.127 37.037 3.32 0.00 0.00 2.10
1270 3132 9.732130 GATCAAAGTTAATGGCCTAGATCTAAT 57.268 33.333 3.32 0.00 0.00 1.73
1290 3152 8.383318 TCTAATATAGTTGCTCTTGAATTGGC 57.617 34.615 0.00 0.00 0.00 4.52
1296 3158 4.082354 AGTTGCTCTTGAATTGGCAGAATC 60.082 41.667 0.00 0.00 36.06 2.52
1306 3168 5.753438 TGAATTGGCAGAATCGAGTGTATAC 59.247 40.000 0.00 0.00 0.00 1.47
1319 3181 5.574055 TCGAGTGTATACGAATGAAACCAAC 59.426 40.000 0.00 0.00 35.62 3.77
1321 3183 5.472148 AGTGTATACGAATGAAACCAACGA 58.528 37.500 0.00 0.00 0.00 3.85
1325 3187 1.141645 CGAATGAAACCAACGACGGA 58.858 50.000 0.00 0.00 0.00 4.69
1329 3191 2.242047 TGAAACCAACGACGGATGAA 57.758 45.000 0.00 0.00 0.00 2.57
1337 3199 2.874694 CGACGGATGAATGGCAGCG 61.875 63.158 0.00 0.00 32.46 5.18
1338 3200 3.173390 GACGGATGAATGGCAGCGC 62.173 63.158 0.00 0.00 32.46 5.92
1385 3247 4.935808 GCTCGAGGAAATCTTGTTTAGGAA 59.064 41.667 15.58 0.00 0.00 3.36
1425 3287 8.237267 GTGTACCTGTATTTCCTTCTTCATTTG 58.763 37.037 0.00 0.00 0.00 2.32
1426 3288 7.942341 TGTACCTGTATTTCCTTCTTCATTTGT 59.058 33.333 0.00 0.00 0.00 2.83
1433 3295 9.626045 GTATTTCCTTCTTCATTTGTACCTTTG 57.374 33.333 0.00 0.00 0.00 2.77
1435 3297 5.701224 TCCTTCTTCATTTGTACCTTTGGT 58.299 37.500 0.00 0.00 40.16 3.67
1436 3298 6.133356 TCCTTCTTCATTTGTACCTTTGGTT 58.867 36.000 0.00 0.00 37.09 3.67
1437 3299 6.609616 TCCTTCTTCATTTGTACCTTTGGTTT 59.390 34.615 0.00 0.00 37.09 3.27
1438 3300 7.125053 TCCTTCTTCATTTGTACCTTTGGTTTT 59.875 33.333 0.00 0.00 37.09 2.43
1440 3302 6.500041 TCTTCATTTGTACCTTTGGTTTTCG 58.500 36.000 0.00 0.00 37.09 3.46
1441 3303 6.319152 TCTTCATTTGTACCTTTGGTTTTCGA 59.681 34.615 0.00 0.00 37.09 3.71
1442 3304 6.642707 TCATTTGTACCTTTGGTTTTCGAT 57.357 33.333 0.00 0.00 37.09 3.59
1444 3306 4.735662 TTGTACCTTTGGTTTTCGATCG 57.264 40.909 9.36 9.36 37.09 3.69
1446 3308 3.991773 TGTACCTTTGGTTTTCGATCGAG 59.008 43.478 18.54 5.81 37.09 4.04
1451 3313 0.796312 TGGTTTTCGATCGAGCAAGC 59.204 50.000 23.89 23.89 0.00 4.01
1453 3315 1.201965 GGTTTTCGATCGAGCAAGCTG 60.202 52.381 23.60 0.00 0.00 4.24
1456 3318 2.299993 TTCGATCGAGCAAGCTGATT 57.700 45.000 18.54 0.00 0.00 2.57
1457 3319 2.299993 TCGATCGAGCAAGCTGATTT 57.700 45.000 15.15 0.00 0.00 2.17
1459 3321 2.159184 TCGATCGAGCAAGCTGATTTCT 60.159 45.455 15.15 0.00 0.00 2.52
1460 3322 2.606725 CGATCGAGCAAGCTGATTTCTT 59.393 45.455 10.26 0.00 0.00 2.52
1461 3323 3.798878 CGATCGAGCAAGCTGATTTCTTA 59.201 43.478 10.26 0.00 0.00 2.10
1462 3324 4.447054 CGATCGAGCAAGCTGATTTCTTAT 59.553 41.667 10.26 0.00 0.00 1.73
1463 3325 5.388268 CGATCGAGCAAGCTGATTTCTTATC 60.388 44.000 10.26 0.00 0.00 1.75
1464 3326 4.758688 TCGAGCAAGCTGATTTCTTATCA 58.241 39.130 0.00 0.00 0.00 2.15
1465 3327 5.178061 TCGAGCAAGCTGATTTCTTATCAA 58.822 37.500 0.00 0.00 0.00 2.57
1466 3328 5.643348 TCGAGCAAGCTGATTTCTTATCAAA 59.357 36.000 0.00 0.00 0.00 2.69
1467 3329 6.149308 TCGAGCAAGCTGATTTCTTATCAAAA 59.851 34.615 0.00 0.00 0.00 2.44
1468 3330 6.971184 CGAGCAAGCTGATTTCTTATCAAAAT 59.029 34.615 0.00 0.00 0.00 1.82
1469 3331 7.044249 CGAGCAAGCTGATTTCTTATCAAAATG 60.044 37.037 0.00 0.00 0.00 2.32
1470 3332 7.833786 AGCAAGCTGATTTCTTATCAAAATGA 58.166 30.769 0.00 0.00 0.00 2.57
1471 3333 8.308931 AGCAAGCTGATTTCTTATCAAAATGAA 58.691 29.630 0.00 0.00 0.00 2.57
1472 3334 8.928733 GCAAGCTGATTTCTTATCAAAATGAAA 58.071 29.630 0.00 0.00 33.74 2.69
1474 3336 8.992835 AGCTGATTTCTTATCAAAATGAAACC 57.007 30.769 0.00 0.00 32.32 3.27
1475 3337 8.810041 AGCTGATTTCTTATCAAAATGAAACCT 58.190 29.630 0.00 0.00 32.32 3.50
1476 3338 9.428097 GCTGATTTCTTATCAAAATGAAACCTT 57.572 29.630 0.00 0.00 32.32 3.50
1480 3342 9.855021 ATTTCTTATCAAAATGAAACCTTACCG 57.145 29.630 0.00 0.00 32.32 4.02
1481 3343 7.385778 TCTTATCAAAATGAAACCTTACCGG 57.614 36.000 0.00 0.00 39.35 5.28
1496 3358 4.338118 CCTTACCGGTTAATCATGCATGTT 59.662 41.667 25.43 19.70 0.00 2.71
1526 3389 4.440663 GCTGATATTTCTGGTCTTTTGGGC 60.441 45.833 0.00 0.00 0.00 5.36
1556 3419 2.666317 ACTACAATATGGCAAAGGGGC 58.334 47.619 0.00 0.00 43.73 5.80
1565 3428 1.078918 GCAAAGGGGCCAATTCAGC 60.079 57.895 4.39 4.23 0.00 4.26
1571 3434 3.372730 GGCCAATTCAGCCGCACA 61.373 61.111 0.00 0.00 41.41 4.57
1579 3442 1.890876 TTCAGCCGCACATGTACTTT 58.109 45.000 0.00 0.00 0.00 2.66
1595 3458 1.160137 CTTTGCTCTCCGGTTCTTGG 58.840 55.000 0.00 0.00 0.00 3.61
1604 3467 0.107703 CCGGTTCTTGGCTGCTCATA 60.108 55.000 0.00 0.00 0.00 2.15
1606 3469 1.667724 CGGTTCTTGGCTGCTCATAAG 59.332 52.381 0.00 0.29 0.00 1.73
1607 3470 2.716217 GGTTCTTGGCTGCTCATAAGT 58.284 47.619 0.00 0.00 0.00 2.24
1646 3509 1.541588 GCCAACAATCCTCAGGACAAC 59.458 52.381 0.00 0.00 32.98 3.32
1663 3526 2.012673 CAACTAGCATCTTCACCTGGC 58.987 52.381 0.00 0.00 0.00 4.85
1665 3528 1.209019 ACTAGCATCTTCACCTGGCTG 59.791 52.381 0.00 0.00 36.10 4.85
1722 3585 5.471797 TGTCTTATGTAACACACAACATGGG 59.528 40.000 0.00 0.00 41.55 4.00
1759 3622 1.518903 GCTTGGTTCCACAGAGTGCC 61.519 60.000 0.00 0.00 31.34 5.01
1761 3624 0.478072 TTGGTTCCACAGAGTGCCAT 59.522 50.000 0.00 0.00 31.34 4.40
1786 3649 1.304630 TACCTCGCTGCCAGGTACA 60.305 57.895 20.23 3.52 42.91 2.90
1801 3664 8.326680 TGCCAGGTACAAATAGTTTTACTAAC 57.673 34.615 0.00 0.00 33.89 2.34
1831 3694 7.716612 AGTTGAAATTATTATGTAGCCTTGCC 58.283 34.615 0.00 0.00 0.00 4.52
1832 3695 7.561356 AGTTGAAATTATTATGTAGCCTTGCCT 59.439 33.333 0.00 0.00 0.00 4.75
1931 3794 6.589523 TGTTGAAGAAACACCACATTTTTCAG 59.410 34.615 0.00 0.00 43.96 3.02
1942 3805 4.627467 CCACATTTTTCAGAGTCTACCTCG 59.373 45.833 0.00 0.00 45.44 4.63
1950 3813 4.392047 TCAGAGTCTACCTCGTGTGTTTA 58.608 43.478 0.00 0.00 45.44 2.01
1953 3816 3.755378 GAGTCTACCTCGTGTGTTTAGGA 59.245 47.826 0.00 0.00 34.34 2.94
1956 3819 3.834732 CCTCGTGTGTTTAGGAGGG 57.165 57.895 6.61 0.00 44.86 4.30
1957 3820 0.249398 CCTCGTGTGTTTAGGAGGGG 59.751 60.000 6.61 0.00 44.86 4.79
1958 3821 0.249398 CTCGTGTGTTTAGGAGGGGG 59.751 60.000 0.00 0.00 0.00 5.40
1967 3830 2.973406 GTTTAGGAGGGGGATCCACTAG 59.027 54.545 15.23 0.00 42.26 2.57
1969 3832 1.843832 GGAGGGGGATCCACTAGGC 60.844 68.421 15.23 0.00 39.34 3.93
1989 3852 6.566197 AGGCAGCTATTATATGACAAAAGC 57.434 37.500 0.00 0.00 0.00 3.51
2008 3875 7.921745 ACAAAAGCGCTTTAAAATGTTAACCTA 59.078 29.630 33.81 0.00 31.63 3.08
2060 3928 5.940470 TGCTCTTTCAGACTCTTAATTTCCC 59.060 40.000 0.00 0.00 0.00 3.97
2126 3994 1.075212 TCACAATGATCTGCCCCACAA 59.925 47.619 0.00 0.00 0.00 3.33
2130 3998 3.289836 CAATGATCTGCCCCACAATGTA 58.710 45.455 0.00 0.00 0.00 2.29
2139 4007 2.813907 CCCCACAATGTAATCCCACAA 58.186 47.619 0.00 0.00 30.84 3.33
2165 4033 8.885494 TCATGTATGACATATTGACATTTCGA 57.115 30.769 0.00 0.00 36.53 3.71
2170 4039 9.803130 GTATGACATATTGACATTTCGAATCAG 57.197 33.333 0.00 0.00 34.78 2.90
2172 4041 7.909267 TGACATATTGACATTTCGAATCAGAC 58.091 34.615 0.00 0.00 0.00 3.51
2174 4043 8.442632 ACATATTGACATTTCGAATCAGACAT 57.557 30.769 0.00 0.00 0.00 3.06
2181 4050 9.249457 TGACATTTCGAATCAGACATACTATTC 57.751 33.333 0.00 0.00 0.00 1.75
2209 4080 4.358214 TGGAGGTTTTCTTTCCCAGTTTT 58.642 39.130 0.00 0.00 0.00 2.43
2250 4123 8.807948 AGTTACTAATTTGGCATGTATTGTCT 57.192 30.769 0.00 0.00 0.00 3.41
2263 4136 3.913799 TGTATTGTCTTCTTTCCAGGGGA 59.086 43.478 0.00 0.00 0.00 4.81
2271 4144 0.254462 CTTTCCAGGGGAAGCTCCTC 59.746 60.000 0.00 0.00 43.06 3.71
2291 4164 4.193865 CTCATGAGCATGTGAACACCATA 58.806 43.478 10.38 0.00 39.72 2.74
2386 4307 8.284945 ACTCTACGTTATGGTTTACACATAGA 57.715 34.615 0.00 0.00 32.85 1.98
2443 4369 1.362224 ACACTACAGCCCAAGGTGAT 58.638 50.000 0.00 0.00 44.53 3.06
2648 4574 2.270352 TGAGAAGTTTCCACCGCATT 57.730 45.000 0.00 0.00 0.00 3.56
2660 4586 0.402504 ACCGCATTTACCTCCCAACA 59.597 50.000 0.00 0.00 0.00 3.33
2686 4612 2.295885 CTGAAGTGATCCTGGCATTCC 58.704 52.381 0.00 0.00 0.00 3.01
2718 4647 1.402720 GCATCGACACCCAAACCATTG 60.403 52.381 0.00 0.00 36.25 2.82
2732 4661 3.356529 ACCATTGTCCTCAATCCTCAC 57.643 47.619 0.00 0.00 41.66 3.51
2733 4662 2.915604 ACCATTGTCCTCAATCCTCACT 59.084 45.455 0.00 0.00 41.66 3.41
2734 4663 4.104086 ACCATTGTCCTCAATCCTCACTA 58.896 43.478 0.00 0.00 41.66 2.74
2750 4679 4.201851 CCTCACTAGCATTTTGGTGATTCG 60.202 45.833 0.00 0.00 37.92 3.34
2800 4735 2.958355 CTCTTCAGTTTTTGCCCCTCAA 59.042 45.455 0.00 0.00 0.00 3.02
2857 4801 5.128663 GCATCCTTGGTGGTAATTGGTAAAT 59.871 40.000 0.00 0.00 37.07 1.40
2863 4807 7.201875 CCTTGGTGGTAATTGGTAAATGATACC 60.202 40.741 0.00 0.00 38.07 2.73
2915 4860 9.210329 TGTTAAATATACTTTCTGCTTGTTCGA 57.790 29.630 0.00 0.00 0.00 3.71
2923 4868 6.398918 ACTTTCTGCTTGTTCGAGTATATGT 58.601 36.000 0.00 0.00 0.00 2.29
2925 4870 8.033038 ACTTTCTGCTTGTTCGAGTATATGTTA 58.967 33.333 0.00 0.00 0.00 2.41
2930 4875 8.487313 TGCTTGTTCGAGTATATGTTATTGTT 57.513 30.769 0.00 0.00 0.00 2.83
2935 4880 7.756272 TGTTCGAGTATATGTTATTGTTCACGT 59.244 33.333 0.00 0.00 0.00 4.49
2936 4881 7.673810 TCGAGTATATGTTATTGTTCACGTG 57.326 36.000 9.94 9.94 0.00 4.49
2938 4883 6.198403 CGAGTATATGTTATTGTTCACGTGCT 59.802 38.462 11.67 0.00 0.00 4.40
2939 4884 7.464830 AGTATATGTTATTGTTCACGTGCTC 57.535 36.000 11.67 6.77 0.00 4.26
2940 4885 7.265673 AGTATATGTTATTGTTCACGTGCTCT 58.734 34.615 11.67 0.00 0.00 4.09
2941 4886 4.668576 ATGTTATTGTTCACGTGCTCTG 57.331 40.909 11.67 0.00 0.00 3.35
2942 4887 2.805671 TGTTATTGTTCACGTGCTCTGG 59.194 45.455 11.67 0.00 0.00 3.86
2943 4888 3.064207 GTTATTGTTCACGTGCTCTGGA 58.936 45.455 11.67 0.00 0.00 3.86
2944 4889 1.512926 ATTGTTCACGTGCTCTGGAC 58.487 50.000 11.67 3.17 0.00 4.02
2945 4890 0.464036 TTGTTCACGTGCTCTGGACT 59.536 50.000 11.67 0.00 0.00 3.85
2946 4891 1.324383 TGTTCACGTGCTCTGGACTA 58.676 50.000 11.67 0.00 0.00 2.59
2947 4892 1.893137 TGTTCACGTGCTCTGGACTAT 59.107 47.619 11.67 0.00 0.00 2.12
2948 4893 2.263077 GTTCACGTGCTCTGGACTATG 58.737 52.381 11.67 0.00 0.00 2.23
2949 4894 1.545841 TCACGTGCTCTGGACTATGT 58.454 50.000 11.67 0.00 0.00 2.29
2950 4895 2.718563 TCACGTGCTCTGGACTATGTA 58.281 47.619 11.67 0.00 0.00 2.29
2951 4896 3.288092 TCACGTGCTCTGGACTATGTAT 58.712 45.455 11.67 0.00 0.00 2.29
2952 4897 3.066760 TCACGTGCTCTGGACTATGTATG 59.933 47.826 11.67 0.00 0.00 2.39
2953 4898 3.024547 ACGTGCTCTGGACTATGTATGT 58.975 45.455 0.00 0.00 0.00 2.29
2954 4899 3.181486 ACGTGCTCTGGACTATGTATGTG 60.181 47.826 0.00 0.00 0.00 3.21
2955 4900 3.181486 CGTGCTCTGGACTATGTATGTGT 60.181 47.826 0.00 0.00 0.00 3.72
2956 4901 4.115516 GTGCTCTGGACTATGTATGTGTG 58.884 47.826 0.00 0.00 0.00 3.82
2957 4902 3.769300 TGCTCTGGACTATGTATGTGTGT 59.231 43.478 0.00 0.00 0.00 3.72
2958 4903 4.953579 TGCTCTGGACTATGTATGTGTGTA 59.046 41.667 0.00 0.00 0.00 2.90
2959 4904 5.598417 TGCTCTGGACTATGTATGTGTGTAT 59.402 40.000 0.00 0.00 0.00 2.29
2960 4905 5.923114 GCTCTGGACTATGTATGTGTGTATG 59.077 44.000 0.00 0.00 0.00 2.39
2961 4906 6.461648 GCTCTGGACTATGTATGTGTGTATGT 60.462 42.308 0.00 0.00 0.00 2.29
2962 4907 7.039313 TCTGGACTATGTATGTGTGTATGTC 57.961 40.000 0.00 0.00 0.00 3.06
2963 4908 6.605594 TCTGGACTATGTATGTGTGTATGTCA 59.394 38.462 0.00 0.00 0.00 3.58
2964 4909 7.287696 TCTGGACTATGTATGTGTGTATGTCAT 59.712 37.037 0.00 0.00 0.00 3.06
2965 4910 7.209475 TGGACTATGTATGTGTGTATGTCATG 58.791 38.462 0.00 0.00 0.00 3.07
2966 4911 7.069331 TGGACTATGTATGTGTGTATGTCATGA 59.931 37.037 0.00 0.00 0.00 3.07
2967 4912 7.926018 GGACTATGTATGTGTGTATGTCATGAA 59.074 37.037 0.00 0.00 0.00 2.57
2968 4913 9.481340 GACTATGTATGTGTGTATGTCATGAAT 57.519 33.333 0.00 0.00 0.00 2.57
2974 4919 9.882996 GTATGTGTGTATGTCATGAATATTTGG 57.117 33.333 0.00 0.00 0.00 3.28
2975 4920 7.332213 TGTGTGTATGTCATGAATATTTGGG 57.668 36.000 0.00 0.00 0.00 4.12
2976 4921 6.183360 TGTGTGTATGTCATGAATATTTGGGC 60.183 38.462 0.00 0.00 0.00 5.36
2977 4922 6.039717 GTGTGTATGTCATGAATATTTGGGCT 59.960 38.462 0.00 0.00 0.00 5.19
2978 4923 6.606796 TGTGTATGTCATGAATATTTGGGCTT 59.393 34.615 0.00 0.00 0.00 4.35
2979 4924 7.123997 TGTGTATGTCATGAATATTTGGGCTTT 59.876 33.333 0.00 0.00 0.00 3.51
2980 4925 7.436080 GTGTATGTCATGAATATTTGGGCTTTG 59.564 37.037 0.00 0.00 0.00 2.77
2981 4926 5.999205 TGTCATGAATATTTGGGCTTTGT 57.001 34.783 0.00 0.00 0.00 2.83
2982 4927 7.658525 ATGTCATGAATATTTGGGCTTTGTA 57.341 32.000 0.00 0.00 0.00 2.41
2983 4928 7.658525 TGTCATGAATATTTGGGCTTTGTAT 57.341 32.000 0.00 0.00 0.00 2.29
2984 4929 8.076910 TGTCATGAATATTTGGGCTTTGTATT 57.923 30.769 0.00 0.00 0.00 1.89
2985 4930 7.980662 TGTCATGAATATTTGGGCTTTGTATTG 59.019 33.333 0.00 0.00 0.00 1.90
2986 4931 7.981225 GTCATGAATATTTGGGCTTTGTATTGT 59.019 33.333 0.00 0.00 0.00 2.71
2987 4932 7.980662 TCATGAATATTTGGGCTTTGTATTGTG 59.019 33.333 0.00 0.00 0.00 3.33
2988 4933 7.238486 TGAATATTTGGGCTTTGTATTGTGT 57.762 32.000 0.00 0.00 0.00 3.72
2989 4934 7.675062 TGAATATTTGGGCTTTGTATTGTGTT 58.325 30.769 0.00 0.00 0.00 3.32
2990 4935 7.601886 TGAATATTTGGGCTTTGTATTGTGTTG 59.398 33.333 0.00 0.00 0.00 3.33
2991 4936 2.810439 TGGGCTTTGTATTGTGTTGC 57.190 45.000 0.00 0.00 0.00 4.17
2992 4937 1.342819 TGGGCTTTGTATTGTGTTGCC 59.657 47.619 0.00 0.00 38.28 4.52
2993 4938 2.078849 GGCTTTGTATTGTGTTGCCC 57.921 50.000 0.00 0.00 33.45 5.36
2994 4939 1.337728 GGCTTTGTATTGTGTTGCCCC 60.338 52.381 0.00 0.00 33.45 5.80
2995 4940 1.337728 GCTTTGTATTGTGTTGCCCCC 60.338 52.381 0.00 0.00 0.00 5.40
2996 4941 2.247358 CTTTGTATTGTGTTGCCCCCT 58.753 47.619 0.00 0.00 0.00 4.79
2997 4942 3.426615 CTTTGTATTGTGTTGCCCCCTA 58.573 45.455 0.00 0.00 0.00 3.53
2998 4943 3.527507 TTGTATTGTGTTGCCCCCTAA 57.472 42.857 0.00 0.00 0.00 2.69
2999 4944 3.527507 TGTATTGTGTTGCCCCCTAAA 57.472 42.857 0.00 0.00 0.00 1.85
3000 4945 4.054359 TGTATTGTGTTGCCCCCTAAAT 57.946 40.909 0.00 0.00 0.00 1.40
3001 4946 4.020543 TGTATTGTGTTGCCCCCTAAATC 58.979 43.478 0.00 0.00 0.00 2.17
3030 5142 9.073475 GACCAATCGAGCCTAGATTATATATCT 57.927 37.037 0.00 0.00 36.64 1.98
3069 5182 6.927294 ATTAAGGGTTTATCAGAGAAAGCG 57.073 37.500 12.38 0.00 35.59 4.68
3332 5445 3.983741 CCTTAGAGGCTTAGATTGTCGG 58.016 50.000 0.00 0.00 0.00 4.79
3337 5450 1.751437 GGCTTAGATTGTCGGCCTTT 58.249 50.000 0.00 0.00 39.68 3.11
3359 5472 3.837146 TGAGCATCTCTAATGATCCCCTC 59.163 47.826 1.30 0.00 33.87 4.30
3363 5476 4.423913 CATCTCTAATGATCCCCTCTCCA 58.576 47.826 0.00 0.00 0.00 3.86
3372 5485 3.245984 TGATCCCCTCTCCAGTGTTAGAA 60.246 47.826 0.00 0.00 0.00 2.10
3382 5495 7.762159 CCTCTCCAGTGTTAGAAGAAGATAAAC 59.238 40.741 0.00 0.00 0.00 2.01
3408 5521 3.478857 TTTCTTCTTCTAACCGGCACA 57.521 42.857 0.00 0.00 0.00 4.57
3418 5531 1.989706 AACCGGCACATAACCAAACT 58.010 45.000 0.00 0.00 0.00 2.66
3425 5538 4.523083 GGCACATAACCAAACTCCTATCA 58.477 43.478 0.00 0.00 0.00 2.15
3426 5539 4.335594 GGCACATAACCAAACTCCTATCAC 59.664 45.833 0.00 0.00 0.00 3.06
3428 5541 4.570772 CACATAACCAAACTCCTATCACCG 59.429 45.833 0.00 0.00 0.00 4.94
3432 5545 4.467198 ACCAAACTCCTATCACCGTTAG 57.533 45.455 0.00 0.00 0.00 2.34
3433 5546 4.091549 ACCAAACTCCTATCACCGTTAGA 58.908 43.478 0.00 0.00 0.00 2.10
3435 5548 4.441634 CCAAACTCCTATCACCGTTAGAGG 60.442 50.000 0.00 0.00 37.30 3.69
3436 5549 3.947612 ACTCCTATCACCGTTAGAGGA 57.052 47.619 0.00 0.00 35.06 3.71
3442 5555 5.897824 TCCTATCACCGTTAGAGGAGAAAAT 59.102 40.000 0.00 0.00 34.68 1.82
3443 5556 6.383147 TCCTATCACCGTTAGAGGAGAAAATT 59.617 38.462 0.00 0.00 34.68 1.82
3444 5557 7.048512 CCTATCACCGTTAGAGGAGAAAATTT 58.951 38.462 0.00 0.00 34.68 1.82
3459 5572 8.672823 GGAGAAAATTTTATCCTACGTGGTAT 57.327 34.615 29.17 0.00 43.44 2.73
3468 5581 1.271656 CCTACGTGGTATCCCCGATTC 59.728 57.143 0.00 0.00 35.15 2.52
3497 5610 0.037303 CTGACCACCCACAGAGCAAT 59.963 55.000 0.00 0.00 36.38 3.56
3522 5635 3.597728 GCCTCTCCCCTACGCTCG 61.598 72.222 0.00 0.00 0.00 5.03
3524 5637 2.829003 CTCTCCCCTACGCTCGCA 60.829 66.667 0.00 0.00 0.00 5.10
3550 5663 2.064434 TGTCATTGGTGTTGCTTCCA 57.936 45.000 0.00 0.00 0.00 3.53
3560 5673 4.704540 TGGTGTTGCTTCCATCGAATAAAT 59.295 37.500 0.00 0.00 0.00 1.40
3567 5680 4.757149 GCTTCCATCGAATAAATAGTGCCT 59.243 41.667 0.00 0.00 0.00 4.75
3568 5681 5.239525 GCTTCCATCGAATAAATAGTGCCTT 59.760 40.000 0.00 0.00 0.00 4.35
3569 5682 6.238759 GCTTCCATCGAATAAATAGTGCCTTT 60.239 38.462 0.00 0.00 0.00 3.11
3572 5685 4.893424 TCGAATAAATAGTGCCTTTGCC 57.107 40.909 0.00 0.00 36.33 4.52
3573 5686 4.523083 TCGAATAAATAGTGCCTTTGCCT 58.477 39.130 0.00 0.00 36.33 4.75
3575 5688 6.296026 TCGAATAAATAGTGCCTTTGCCTAT 58.704 36.000 0.00 0.00 34.47 2.57
3579 5692 3.790089 ATAGTGCCTTTGCCTATACCC 57.210 47.619 0.00 0.00 36.33 3.69
3581 5694 0.818040 GTGCCTTTGCCTATACCCCG 60.818 60.000 0.00 0.00 36.33 5.73
3585 5698 1.153046 TTTGCCTATACCCCGCTGC 60.153 57.895 0.00 0.00 0.00 5.25
3586 5699 1.632018 TTTGCCTATACCCCGCTGCT 61.632 55.000 0.00 0.00 0.00 4.24
3604 5717 1.412343 GCTTCCTCTGCCCTCTTAGAG 59.588 57.143 1.56 1.56 40.05 2.43
3646 5759 0.465097 CGGAATCCAGCTCCATTGCT 60.465 55.000 0.00 0.00 45.18 3.91
3647 5760 1.202687 CGGAATCCAGCTCCATTGCTA 60.203 52.381 0.00 0.00 41.98 3.49
3648 5761 2.225467 GGAATCCAGCTCCATTGCTAC 58.775 52.381 0.00 0.00 41.98 3.58
3649 5762 2.225467 GAATCCAGCTCCATTGCTACC 58.775 52.381 0.00 0.00 41.98 3.18
3650 5763 0.107456 ATCCAGCTCCATTGCTACCG 59.893 55.000 0.00 0.00 41.98 4.02
3651 5764 2.182842 CCAGCTCCATTGCTACCGC 61.183 63.158 0.00 0.00 41.98 5.68
3652 5765 2.182842 CAGCTCCATTGCTACCGCC 61.183 63.158 0.00 0.00 41.98 6.13
3653 5766 3.272334 GCTCCATTGCTACCGCCG 61.272 66.667 0.00 0.00 34.43 6.46
3654 5767 2.499205 CTCCATTGCTACCGCCGA 59.501 61.111 0.00 0.00 34.43 5.54
3655 5768 1.153449 CTCCATTGCTACCGCCGAA 60.153 57.895 0.00 0.00 34.43 4.30
3656 5769 0.532862 CTCCATTGCTACCGCCGAAT 60.533 55.000 0.00 0.00 34.43 3.34
3657 5770 0.107410 TCCATTGCTACCGCCGAATT 60.107 50.000 0.00 0.00 34.43 2.17
3658 5771 1.139256 TCCATTGCTACCGCCGAATTA 59.861 47.619 0.00 0.00 34.43 1.40
3659 5772 2.151202 CCATTGCTACCGCCGAATTAT 58.849 47.619 0.00 0.00 34.43 1.28
3660 5773 2.159627 CCATTGCTACCGCCGAATTATC 59.840 50.000 0.00 0.00 34.43 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.238521 GAGGCCAATTCACCACAAAGA 58.761 47.619 5.01 0.00 0.00 2.52
61 62 1.691434 CTAGTTCATCCTCAGCCTCCC 59.309 57.143 0.00 0.00 0.00 4.30
86 88 2.729479 CCTGAGGCTGCTCGACCAT 61.729 63.158 0.00 0.00 0.00 3.55
213 222 6.655003 CCTTTCGAATTGGCCACTATATATGT 59.345 38.462 3.88 0.00 0.00 2.29
214 223 6.094048 CCCTTTCGAATTGGCCACTATATATG 59.906 42.308 3.88 0.00 0.00 1.78
215 224 6.180472 CCCTTTCGAATTGGCCACTATATAT 58.820 40.000 3.88 0.00 0.00 0.86
216 225 5.514136 CCCCTTTCGAATTGGCCACTATATA 60.514 44.000 3.88 0.00 0.00 0.86
217 226 4.398319 CCCTTTCGAATTGGCCACTATAT 58.602 43.478 3.88 0.00 0.00 0.86
218 227 3.434453 CCCCTTTCGAATTGGCCACTATA 60.434 47.826 3.88 0.00 0.00 1.31
262 271 1.566018 GGCGAAGACCACCTTTCGTG 61.566 60.000 8.20 0.00 42.62 4.35
283 292 1.583054 GTCACGACCAGAAGCTTTGT 58.417 50.000 0.00 0.00 0.00 2.83
311 320 2.419198 GATGTCATCGCCGAGCCT 59.581 61.111 0.00 0.00 0.00 4.58
337 346 3.240134 GACCAAGACCGCTGGCTCA 62.240 63.158 0.00 0.00 0.00 4.26
343 352 1.166531 GCAACAAGACCAAGACCGCT 61.167 55.000 0.00 0.00 0.00 5.52
345 354 0.307760 GTGCAACAAGACCAAGACCG 59.692 55.000 0.00 0.00 36.32 4.79
418 433 3.119137 GCAATTTCCCTTTCGGTGCTAAT 60.119 43.478 0.00 0.00 0.00 1.73
437 452 1.002430 CAGTAGGCACAGAAGAGGCAA 59.998 52.381 0.00 0.00 33.34 4.52
477 492 2.027007 TGTGATGACATGAGCCATGACA 60.027 45.455 18.41 17.80 46.22 3.58
514 529 5.078411 AGCGGATATTTCTATGCAGGTAG 57.922 43.478 0.00 0.00 0.00 3.18
537 552 3.905153 TTCAGGCTGCCTCCCGAGA 62.905 63.158 20.49 10.08 0.00 4.04
570 588 0.898320 CGGGTGACATCAAGACCTCT 59.102 55.000 0.00 0.00 0.00 3.69
709 731 2.419297 GCATTACTCTCAGTGTCCTGGG 60.419 54.545 0.00 0.00 40.85 4.45
751 774 1.518572 CGGTGCCACGTGGTAGATC 60.519 63.158 33.92 18.61 37.57 2.75
753 776 3.687102 CCGGTGCCACGTGGTAGA 61.687 66.667 33.92 16.82 37.57 2.59
773 802 0.109342 CTTGCCAGAATCCGCCCTAT 59.891 55.000 0.00 0.00 0.00 2.57
803 832 2.162681 ACCTGCCAAAAGTAGCATGAC 58.837 47.619 0.00 0.00 38.56 3.06
805 834 3.347216 ACTACCTGCCAAAAGTAGCATG 58.653 45.455 0.00 0.00 38.56 4.06
806 835 3.721087 ACTACCTGCCAAAAGTAGCAT 57.279 42.857 0.00 0.00 38.56 3.79
807 836 4.627284 TTACTACCTGCCAAAAGTAGCA 57.373 40.909 0.00 0.00 37.57 3.49
819 848 4.750098 CCTTTGGCGTCATATTACTACCTG 59.250 45.833 0.00 0.00 0.00 4.00
830 859 7.875327 AATTAGTAATTACCTTTGGCGTCAT 57.125 32.000 12.05 0.00 0.00 3.06
872 2725 1.828081 CCATCCTGAGCTAGCAGCA 59.172 57.895 18.83 13.49 45.56 4.41
873 2726 1.597578 GCCATCCTGAGCTAGCAGC 60.598 63.158 18.83 9.13 42.84 5.25
879 2732 0.255318 CTCAAAGGCCATCCTGAGCT 59.745 55.000 5.01 0.00 43.40 4.09
913 2768 1.226030 GGGACGAACTTGACCAACGG 61.226 60.000 0.00 0.00 0.00 4.44
918 2773 0.971386 TGTAGGGGACGAACTTGACC 59.029 55.000 0.00 0.00 0.00 4.02
919 2774 4.341520 AGATATGTAGGGGACGAACTTGAC 59.658 45.833 0.00 0.00 0.00 3.18
951 2813 5.138276 AGGTAGGACACGTCACATACATAT 58.862 41.667 12.83 0.18 0.00 1.78
954 2816 2.799017 AGGTAGGACACGTCACATACA 58.201 47.619 12.83 0.00 0.00 2.29
974 2836 1.224003 AGGAGGGGGTAGGACCGTAA 61.224 60.000 0.00 0.00 39.83 3.18
995 2857 1.089112 CTGCCGCATGTTCATCTTCA 58.911 50.000 0.00 0.00 0.00 3.02
1014 2876 2.047655 TGACCCATCAACGCCGTC 60.048 61.111 0.00 0.00 0.00 4.79
1018 2880 3.134127 GGCCTGACCCATCAACGC 61.134 66.667 0.00 0.00 33.30 4.84
1020 2882 3.134127 GCGGCCTGACCCATCAAC 61.134 66.667 0.00 0.00 33.30 3.18
1021 2883 3.329889 AGCGGCCTGACCCATCAA 61.330 61.111 0.00 0.00 33.30 2.57
1076 2938 4.437587 GGCCTGCCACATCCTGCT 62.438 66.667 2.58 0.00 35.81 4.24
1082 2944 2.360350 CGACAAGGCCTGCCACAT 60.360 61.111 5.69 0.00 38.92 3.21
1089 2951 3.537206 GACACCTGCGACAAGGCCT 62.537 63.158 0.00 0.00 41.46 5.19
1095 2957 2.571757 GGATCGACACCTGCGACA 59.428 61.111 0.00 0.00 40.94 4.35
1097 2959 3.458163 GGGGATCGACACCTGCGA 61.458 66.667 9.78 0.00 39.39 5.10
1101 2963 1.354368 ACAAATTGGGGATCGACACCT 59.646 47.619 9.78 0.00 43.74 4.00
1116 2978 1.135315 GTCGCGCATCAGCACAAAT 59.865 52.632 8.75 0.00 42.27 2.32
1125 2987 1.661509 TCGGATCATGTCGCGCATC 60.662 57.895 8.75 0.71 35.19 3.91
1137 2999 4.626172 GGTTCTTACAACTTCTGTCGGATC 59.374 45.833 0.00 0.00 39.64 3.36
1138 3000 4.562963 GGGTTCTTACAACTTCTGTCGGAT 60.563 45.833 0.00 0.00 39.64 4.18
1157 3019 2.487086 GGGCAAAGAAAAGCAATGGGTT 60.487 45.455 0.00 0.00 35.98 4.11
1159 3021 1.611410 GGGGCAAAGAAAAGCAATGGG 60.611 52.381 0.00 0.00 0.00 4.00
1182 3044 8.112016 TCTCGAAGTATTATACTCATTCCCAG 57.888 38.462 5.26 0.00 38.26 4.45
1195 3057 7.226720 GGGAGCATGATTTTTCTCGAAGTATTA 59.773 37.037 0.00 0.00 0.00 0.98
1198 3060 4.876107 GGGAGCATGATTTTTCTCGAAGTA 59.124 41.667 0.00 0.00 0.00 2.24
1201 3063 3.941483 GAGGGAGCATGATTTTTCTCGAA 59.059 43.478 0.00 0.00 0.00 3.71
1202 3064 3.198635 AGAGGGAGCATGATTTTTCTCGA 59.801 43.478 0.00 0.00 0.00 4.04
1203 3065 3.311871 CAGAGGGAGCATGATTTTTCTCG 59.688 47.826 0.00 0.00 0.00 4.04
1204 3066 4.521146 TCAGAGGGAGCATGATTTTTCTC 58.479 43.478 0.00 0.00 0.00 2.87
1213 3075 0.755079 TTCGGATCAGAGGGAGCATG 59.245 55.000 0.00 0.00 32.12 4.06
1214 3076 1.500474 TTTCGGATCAGAGGGAGCAT 58.500 50.000 0.00 0.00 32.12 3.79
1216 3078 3.070302 ACTTATTTCGGATCAGAGGGAGC 59.930 47.826 0.00 0.00 0.00 4.70
1224 3086 8.481974 TTGATCGTAAAACTTATTTCGGATCA 57.518 30.769 0.00 10.33 36.69 2.92
1243 3105 6.226787 AGATCTAGGCCATTAACTTTGATCG 58.773 40.000 5.01 0.00 34.10 3.69
1254 3116 8.386012 AGCAACTATATTAGATCTAGGCCATT 57.614 34.615 5.01 0.00 0.00 3.16
1255 3117 7.843760 AGAGCAACTATATTAGATCTAGGCCAT 59.156 37.037 5.01 0.00 0.00 4.40
1256 3118 7.185565 AGAGCAACTATATTAGATCTAGGCCA 58.814 38.462 5.01 0.00 0.00 5.36
1257 3119 7.654022 AGAGCAACTATATTAGATCTAGGCC 57.346 40.000 2.02 0.00 0.00 5.19
1258 3120 8.744652 TCAAGAGCAACTATATTAGATCTAGGC 58.255 37.037 2.02 0.00 0.00 3.93
1264 3126 9.007901 GCCAATTCAAGAGCAACTATATTAGAT 57.992 33.333 0.00 0.00 0.00 1.98
1265 3127 7.992608 TGCCAATTCAAGAGCAACTATATTAGA 59.007 33.333 0.00 0.00 30.97 2.10
1266 3128 8.158169 TGCCAATTCAAGAGCAACTATATTAG 57.842 34.615 0.00 0.00 30.97 1.73
1267 3129 7.992608 TCTGCCAATTCAAGAGCAACTATATTA 59.007 33.333 0.00 0.00 34.26 0.98
1268 3130 6.830324 TCTGCCAATTCAAGAGCAACTATATT 59.170 34.615 0.00 0.00 34.26 1.28
1269 3131 6.359804 TCTGCCAATTCAAGAGCAACTATAT 58.640 36.000 0.00 0.00 34.26 0.86
1270 3132 5.744171 TCTGCCAATTCAAGAGCAACTATA 58.256 37.500 0.00 0.00 34.26 1.31
1271 3133 4.592942 TCTGCCAATTCAAGAGCAACTAT 58.407 39.130 0.00 0.00 34.26 2.12
1272 3134 4.019792 TCTGCCAATTCAAGAGCAACTA 57.980 40.909 0.00 0.00 34.26 2.24
1273 3135 2.867624 TCTGCCAATTCAAGAGCAACT 58.132 42.857 0.00 0.00 34.26 3.16
1274 3136 3.648339 TTCTGCCAATTCAAGAGCAAC 57.352 42.857 0.00 0.00 34.26 4.17
1275 3137 3.119743 CGATTCTGCCAATTCAAGAGCAA 60.120 43.478 0.00 0.00 34.26 3.91
1276 3138 2.421073 CGATTCTGCCAATTCAAGAGCA 59.579 45.455 0.00 0.00 0.00 4.26
1290 3152 7.306051 GGTTTCATTCGTATACACTCGATTCTG 60.306 40.741 3.32 0.00 36.01 3.02
1296 3158 5.498069 CGTTGGTTTCATTCGTATACACTCG 60.498 44.000 3.32 0.00 0.00 4.18
1306 3168 1.141645 TCCGTCGTTGGTTTCATTCG 58.858 50.000 0.00 0.00 0.00 3.34
1319 3181 2.874694 CGCTGCCATTCATCCGTCG 61.875 63.158 0.00 0.00 0.00 5.12
1321 3183 3.204827 GCGCTGCCATTCATCCGT 61.205 61.111 0.00 0.00 0.00 4.69
1337 3199 4.767255 CGACCTCTGGCACCTGGC 62.767 72.222 0.00 0.00 43.74 4.85
1338 3200 4.767255 GCGACCTCTGGCACCTGG 62.767 72.222 0.00 0.00 0.00 4.45
1363 3225 6.832804 GTTTCCTAAACAAGATTTCCTCGAG 58.167 40.000 5.13 5.13 41.04 4.04
1401 3263 8.336801 ACAAATGAAGAAGGAAATACAGGTAC 57.663 34.615 0.00 0.00 0.00 3.34
1403 3265 7.393515 GGTACAAATGAAGAAGGAAATACAGGT 59.606 37.037 0.00 0.00 0.00 4.00
1405 3267 8.567285 AGGTACAAATGAAGAAGGAAATACAG 57.433 34.615 0.00 0.00 0.00 2.74
1425 3287 3.181523 GCTCGATCGAAAACCAAAGGTAC 60.182 47.826 19.92 0.00 33.12 3.34
1426 3288 2.997986 GCTCGATCGAAAACCAAAGGTA 59.002 45.455 19.92 0.00 33.12 3.08
1433 3295 1.079503 AGCTTGCTCGATCGAAAACC 58.920 50.000 19.92 8.13 0.00 3.27
1435 3297 2.078849 TCAGCTTGCTCGATCGAAAA 57.921 45.000 19.92 14.88 0.00 2.29
1436 3298 2.299993 ATCAGCTTGCTCGATCGAAA 57.700 45.000 19.92 10.56 0.00 3.46
1437 3299 2.299993 AATCAGCTTGCTCGATCGAA 57.700 45.000 19.92 1.73 0.00 3.71
1438 3300 2.159184 AGAAATCAGCTTGCTCGATCGA 60.159 45.455 18.32 18.32 0.00 3.59
1440 3302 5.464722 TGATAAGAAATCAGCTTGCTCGATC 59.535 40.000 0.00 0.00 0.00 3.69
1441 3303 5.363101 TGATAAGAAATCAGCTTGCTCGAT 58.637 37.500 0.00 0.00 0.00 3.59
1442 3304 4.758688 TGATAAGAAATCAGCTTGCTCGA 58.241 39.130 0.00 0.00 0.00 4.04
1444 3306 7.972277 TCATTTTGATAAGAAATCAGCTTGCTC 59.028 33.333 0.00 0.00 0.00 4.26
1446 3308 8.470040 TTCATTTTGATAAGAAATCAGCTTGC 57.530 30.769 0.00 0.00 0.00 4.01
1456 3318 7.822658 CCGGTAAGGTTTCATTTTGATAAGAA 58.177 34.615 0.00 0.00 34.51 2.52
1457 3319 7.385778 CCGGTAAGGTTTCATTTTGATAAGA 57.614 36.000 0.00 0.00 34.51 2.10
1474 3336 5.499139 AACATGCATGATTAACCGGTAAG 57.501 39.130 32.75 1.29 0.00 2.34
1475 3337 8.856153 ATATAACATGCATGATTAACCGGTAA 57.144 30.769 32.75 2.91 0.00 2.85
1476 3338 8.318412 AGATATAACATGCATGATTAACCGGTA 58.682 33.333 32.75 14.70 0.00 4.02
1477 3339 7.119699 CAGATATAACATGCATGATTAACCGGT 59.880 37.037 32.75 0.00 0.00 5.28
1478 3340 7.466805 CAGATATAACATGCATGATTAACCGG 58.533 38.462 32.75 13.48 0.00 5.28
1479 3341 6.963242 GCAGATATAACATGCATGATTAACCG 59.037 38.462 32.75 14.62 39.75 4.44
1480 3342 7.966753 CAGCAGATATAACATGCATGATTAACC 59.033 37.037 32.75 16.15 42.45 2.85
1481 3343 8.724229 TCAGCAGATATAACATGCATGATTAAC 58.276 33.333 32.75 17.32 42.45 2.01
1482 3344 8.851541 TCAGCAGATATAACATGCATGATTAA 57.148 30.769 32.75 15.16 42.45 1.40
1484 3346 7.939784 ATCAGCAGATATAACATGCATGATT 57.060 32.000 32.75 22.68 42.45 2.57
1485 3347 9.628500 AATATCAGCAGATATAACATGCATGAT 57.372 29.630 32.75 23.52 44.67 2.45
1486 3348 9.457436 AAATATCAGCAGATATAACATGCATGA 57.543 29.630 32.75 12.33 44.67 3.07
1487 3349 9.717892 GAAATATCAGCAGATATAACATGCATG 57.282 33.333 25.09 25.09 44.67 4.06
1488 3350 9.682465 AGAAATATCAGCAGATATAACATGCAT 57.318 29.630 11.58 0.00 44.67 3.96
1526 3389 4.037565 TGCCATATTGTAGTACTCCGTCTG 59.962 45.833 0.00 0.00 0.00 3.51
1549 3412 1.984026 CGGCTGAATTGGCCCCTTT 60.984 57.895 0.00 0.00 46.24 3.11
1556 3419 1.093972 TACATGTGCGGCTGAATTGG 58.906 50.000 9.11 0.00 0.00 3.16
1565 3428 1.394917 GAGAGCAAAGTACATGTGCGG 59.605 52.381 9.11 3.82 43.16 5.69
1567 3430 1.394917 CGGAGAGCAAAGTACATGTGC 59.605 52.381 9.11 7.34 38.59 4.57
1568 3431 2.002586 CCGGAGAGCAAAGTACATGTG 58.997 52.381 9.11 0.00 0.00 3.21
1571 3434 2.567615 AGAACCGGAGAGCAAAGTACAT 59.432 45.455 9.46 0.00 0.00 2.29
1579 3442 2.217038 AGCCAAGAACCGGAGAGCA 61.217 57.895 9.46 0.00 0.00 4.26
1595 3458 3.751175 TGTTGTTGGTACTTATGAGCAGC 59.249 43.478 0.00 0.00 0.00 5.25
1604 3467 4.743493 CTTTGTTGCTGTTGTTGGTACTT 58.257 39.130 0.00 0.00 0.00 2.24
1606 3469 2.857748 GCTTTGTTGCTGTTGTTGGTAC 59.142 45.455 0.00 0.00 0.00 3.34
1607 3470 2.159170 GGCTTTGTTGCTGTTGTTGGTA 60.159 45.455 0.00 0.00 0.00 3.25
1646 3509 1.209019 ACAGCCAGGTGAAGATGCTAG 59.791 52.381 3.46 0.00 0.00 3.42
1722 3585 1.552792 AGCCTGCACTAGAAGAAGGAC 59.447 52.381 15.51 8.45 0.00 3.85
1759 3622 0.882042 GCAGCGAGGTACCCATGATG 60.882 60.000 8.74 8.87 0.00 3.07
1761 3624 2.731571 GGCAGCGAGGTACCCATGA 61.732 63.158 8.74 0.00 0.00 3.07
1825 3688 1.452833 GCTAGAAGCCCAGGCAAGG 60.453 63.158 12.03 0.00 44.88 3.61
1826 3689 4.232310 GCTAGAAGCCCAGGCAAG 57.768 61.111 12.03 3.91 44.88 4.01
1847 3710 6.754702 ATATGCTGCTAGCTATTGGATTTG 57.245 37.500 17.23 0.00 42.97 2.32
1921 3784 5.221461 ACACGAGGTAGACTCTGAAAAATGT 60.221 40.000 0.00 0.00 44.33 2.71
1931 3794 3.755378 TCCTAAACACACGAGGTAGACTC 59.245 47.826 0.00 0.00 43.02 3.36
1942 3805 1.212195 GGATCCCCCTCCTAAACACAC 59.788 57.143 0.00 0.00 32.18 3.82
1950 3813 1.950244 CCTAGTGGATCCCCCTCCT 59.050 63.158 9.90 0.00 36.20 3.69
1953 3816 1.074167 CTGCCTAGTGGATCCCCCT 60.074 63.158 9.90 7.79 35.38 4.79
1956 3819 1.650528 ATAGCTGCCTAGTGGATCCC 58.349 55.000 9.90 0.11 34.57 3.85
1957 3820 6.325028 TCATATAATAGCTGCCTAGTGGATCC 59.675 42.308 4.20 4.20 34.57 3.36
1958 3821 7.147828 TGTCATATAATAGCTGCCTAGTGGATC 60.148 40.741 0.00 0.00 34.57 3.36
1967 3830 5.385617 CGCTTTTGTCATATAATAGCTGCC 58.614 41.667 0.00 0.00 32.30 4.85
1969 3832 6.233430 AGCGCTTTTGTCATATAATAGCTG 57.767 37.500 2.64 0.00 32.30 4.24
2067 3935 9.578576 AACTGATACAATTAATGGCATACTCAT 57.421 29.630 0.00 0.00 0.00 2.90
2126 3994 7.289310 TGTCATACATGATTGTGGGATTACAT 58.711 34.615 0.00 0.00 39.30 2.29
2130 3998 8.799367 CAATATGTCATACATGATTGTGGGATT 58.201 33.333 0.00 0.00 39.53 3.01
2139 4007 9.492973 TCGAAATGTCAATATGTCATACATGAT 57.507 29.630 0.00 1.18 39.53 2.45
2170 4039 6.472686 ACCTCCAAGACAGAATAGTATGTC 57.527 41.667 9.82 9.82 44.73 3.06
2172 4041 8.043710 AGAAAACCTCCAAGACAGAATAGTATG 58.956 37.037 0.00 0.00 0.00 2.39
2174 4043 7.554959 AGAAAACCTCCAAGACAGAATAGTA 57.445 36.000 0.00 0.00 0.00 1.82
2181 4050 3.570125 GGGAAAGAAAACCTCCAAGACAG 59.430 47.826 0.00 0.00 0.00 3.51
2222 4093 9.681062 ACAATACATGCCAAATTAGTAACTAGT 57.319 29.630 0.00 0.00 0.00 2.57
2244 4117 3.815757 GCTTCCCCTGGAAAGAAGACAAT 60.816 47.826 19.06 0.00 41.54 2.71
2250 4123 0.698818 GGAGCTTCCCCTGGAAAGAA 59.301 55.000 11.53 3.97 41.54 2.52
2271 4144 3.943381 AGTATGGTGTTCACATGCTCATG 59.057 43.478 8.21 8.21 36.73 3.07
2314 4187 6.351033 GGACTCTGTAGACCAATCATGTTGTA 60.351 42.308 0.00 0.00 37.48 2.41
2342 4215 4.586001 AGAGTCCTTACGAGGTTGTTGTTA 59.414 41.667 0.00 0.00 43.97 2.41
2360 4233 8.400947 TCTATGTGTAAACCATAACGTAGAGTC 58.599 37.037 0.00 0.00 36.63 3.36
2443 4369 4.082523 GCGCCAGGTGTGCCTCTA 62.083 66.667 0.00 0.00 44.97 2.43
2455 4381 3.233953 TCCTTTATAGGAGGCGCCA 57.766 52.632 31.54 8.23 45.82 5.69
2531 4457 3.200605 TGTGGCCACAGATAGTTGATGAT 59.799 43.478 34.74 0.00 36.21 2.45
2648 4574 2.983192 TCAGTCCATTGTTGGGAGGTAA 59.017 45.455 0.00 0.00 43.81 2.85
2660 4586 2.356535 GCCAGGATCACTTCAGTCCATT 60.357 50.000 0.00 0.00 34.42 3.16
2718 4647 4.414337 AATGCTAGTGAGGATTGAGGAC 57.586 45.455 0.00 0.00 41.74 3.85
2732 4661 5.525012 TCAGATCGAATCACCAAAATGCTAG 59.475 40.000 0.00 0.00 0.00 3.42
2733 4662 5.427378 TCAGATCGAATCACCAAAATGCTA 58.573 37.500 0.00 0.00 0.00 3.49
2734 4663 4.264253 TCAGATCGAATCACCAAAATGCT 58.736 39.130 0.00 0.00 0.00 3.79
2800 4735 4.927425 TCTTACGCGAGCAGTTCTTAAAAT 59.073 37.500 15.93 0.00 0.00 1.82
2857 4801 6.763135 GCAGATGAAGTTCACAATAGGTATCA 59.237 38.462 7.96 0.00 0.00 2.15
2863 4807 6.732531 TCTTGCAGATGAAGTTCACAATAG 57.267 37.500 7.96 1.94 0.00 1.73
2892 4837 8.997621 ACTCGAACAAGCAGAAAGTATATTTA 57.002 30.769 0.00 0.00 0.00 1.40
2906 4851 8.600625 TGAACAATAACATATACTCGAACAAGC 58.399 33.333 0.00 0.00 0.00 4.01
2915 4860 7.222805 CAGAGCACGTGAACAATAACATATACT 59.777 37.037 22.23 0.00 0.00 2.12
2923 4868 3.064207 GTCCAGAGCACGTGAACAATAA 58.936 45.455 22.23 0.00 0.00 1.40
2925 4870 1.070758 AGTCCAGAGCACGTGAACAAT 59.929 47.619 22.23 0.00 0.00 2.71
2930 4875 1.545841 ACATAGTCCAGAGCACGTGA 58.454 50.000 22.23 0.00 0.00 4.35
2935 4880 3.769300 ACACACATACATAGTCCAGAGCA 59.231 43.478 0.00 0.00 0.00 4.26
2936 4881 4.392921 ACACACATACATAGTCCAGAGC 57.607 45.455 0.00 0.00 0.00 4.09
2938 4883 6.605594 TGACATACACACATACATAGTCCAGA 59.394 38.462 0.00 0.00 0.00 3.86
2939 4884 6.805713 TGACATACACACATACATAGTCCAG 58.194 40.000 0.00 0.00 0.00 3.86
2940 4885 6.783708 TGACATACACACATACATAGTCCA 57.216 37.500 0.00 0.00 0.00 4.02
2941 4886 7.433680 TCATGACATACACACATACATAGTCC 58.566 38.462 0.00 0.00 0.00 3.85
2942 4887 8.871686 TTCATGACATACACACATACATAGTC 57.128 34.615 0.00 0.00 0.00 2.59
2948 4893 9.882996 CCAAATATTCATGACATACACACATAC 57.117 33.333 0.00 0.00 0.00 2.39
2949 4894 9.065798 CCCAAATATTCATGACATACACACATA 57.934 33.333 0.00 0.00 0.00 2.29
2950 4895 7.470424 GCCCAAATATTCATGACATACACACAT 60.470 37.037 0.00 0.00 0.00 3.21
2951 4896 6.183360 GCCCAAATATTCATGACATACACACA 60.183 38.462 0.00 0.00 0.00 3.72
2952 4897 6.039717 AGCCCAAATATTCATGACATACACAC 59.960 38.462 0.00 0.00 0.00 3.82
2953 4898 6.128486 AGCCCAAATATTCATGACATACACA 58.872 36.000 0.00 0.00 0.00 3.72
2954 4899 6.639632 AGCCCAAATATTCATGACATACAC 57.360 37.500 0.00 0.00 0.00 2.90
2955 4900 7.123997 ACAAAGCCCAAATATTCATGACATACA 59.876 33.333 0.00 0.00 0.00 2.29
2956 4901 7.491682 ACAAAGCCCAAATATTCATGACATAC 58.508 34.615 0.00 0.00 0.00 2.39
2957 4902 7.658525 ACAAAGCCCAAATATTCATGACATA 57.341 32.000 0.00 0.00 0.00 2.29
2958 4903 6.549433 ACAAAGCCCAAATATTCATGACAT 57.451 33.333 0.00 0.00 0.00 3.06
2959 4904 5.999205 ACAAAGCCCAAATATTCATGACA 57.001 34.783 0.00 0.00 0.00 3.58
2960 4905 7.981225 ACAATACAAAGCCCAAATATTCATGAC 59.019 33.333 0.00 0.00 0.00 3.06
2961 4906 7.980662 CACAATACAAAGCCCAAATATTCATGA 59.019 33.333 0.00 0.00 0.00 3.07
2962 4907 7.765360 ACACAATACAAAGCCCAAATATTCATG 59.235 33.333 0.00 0.00 0.00 3.07
2963 4908 7.850193 ACACAATACAAAGCCCAAATATTCAT 58.150 30.769 0.00 0.00 0.00 2.57
2964 4909 7.238486 ACACAATACAAAGCCCAAATATTCA 57.762 32.000 0.00 0.00 0.00 2.57
2965 4910 7.412891 GCAACACAATACAAAGCCCAAATATTC 60.413 37.037 0.00 0.00 0.00 1.75
2966 4911 6.371271 GCAACACAATACAAAGCCCAAATATT 59.629 34.615 0.00 0.00 0.00 1.28
2967 4912 5.874261 GCAACACAATACAAAGCCCAAATAT 59.126 36.000 0.00 0.00 0.00 1.28
2968 4913 5.233988 GCAACACAATACAAAGCCCAAATA 58.766 37.500 0.00 0.00 0.00 1.40
2969 4914 4.064388 GCAACACAATACAAAGCCCAAAT 58.936 39.130 0.00 0.00 0.00 2.32
2970 4915 3.462021 GCAACACAATACAAAGCCCAAA 58.538 40.909 0.00 0.00 0.00 3.28
2971 4916 2.224161 GGCAACACAATACAAAGCCCAA 60.224 45.455 0.00 0.00 34.71 4.12
2972 4917 1.342819 GGCAACACAATACAAAGCCCA 59.657 47.619 0.00 0.00 34.71 5.36
2973 4918 2.078849 GGCAACACAATACAAAGCCC 57.921 50.000 0.00 0.00 34.71 5.19
2974 4919 1.337728 GGGGCAACACAATACAAAGCC 60.338 52.381 0.00 0.00 42.67 4.35
2975 4920 2.078849 GGGGCAACACAATACAAAGC 57.921 50.000 0.00 0.00 42.67 3.51
2985 4930 2.489040 CCGATTTAGGGGGCAACAC 58.511 57.895 0.00 0.00 42.03 3.32
2994 4939 2.755650 CTCGATTGGTCCCGATTTAGG 58.244 52.381 0.00 0.00 34.08 2.69
2995 4940 2.135933 GCTCGATTGGTCCCGATTTAG 58.864 52.381 0.00 0.00 34.08 1.85
2996 4941 1.202604 GGCTCGATTGGTCCCGATTTA 60.203 52.381 0.00 0.00 34.08 1.40
2997 4942 0.463833 GGCTCGATTGGTCCCGATTT 60.464 55.000 0.00 0.00 34.08 2.17
2998 4943 1.146263 GGCTCGATTGGTCCCGATT 59.854 57.895 0.00 0.00 34.08 3.34
2999 4944 0.469331 TAGGCTCGATTGGTCCCGAT 60.469 55.000 0.00 0.00 34.08 4.18
3000 4945 1.076559 TAGGCTCGATTGGTCCCGA 60.077 57.895 0.00 0.00 0.00 5.14
3001 4946 1.107538 TCTAGGCTCGATTGGTCCCG 61.108 60.000 0.00 0.00 0.00 5.14
3011 5123 7.711846 AGCACAAGATATATAATCTAGGCTCG 58.288 38.462 0.00 0.00 29.15 5.03
3030 5142 6.410540 ACCCTTAATTTGTTTTTGAGCACAA 58.589 32.000 0.00 0.00 0.00 3.33
3327 5440 0.391661 GAGATGCTCAAAGGCCGACA 60.392 55.000 0.00 0.00 0.00 4.35
3330 5443 2.315925 TTAGAGATGCTCAAAGGCCG 57.684 50.000 0.00 0.00 32.06 6.13
3331 5444 3.813443 TCATTAGAGATGCTCAAAGGCC 58.187 45.455 0.00 0.00 32.06 5.19
3332 5445 4.455190 GGATCATTAGAGATGCTCAAAGGC 59.545 45.833 0.00 0.00 34.02 4.35
3337 5450 3.837146 GAGGGGATCATTAGAGATGCTCA 59.163 47.826 0.00 0.00 39.10 4.26
3382 5495 5.642063 TGCCGGTTAGAAGAAGAAAACATAG 59.358 40.000 1.90 0.00 0.00 2.23
3386 5499 3.562557 TGTGCCGGTTAGAAGAAGAAAAC 59.437 43.478 1.90 0.00 0.00 2.43
3408 5521 5.431179 AACGGTGATAGGAGTTTGGTTAT 57.569 39.130 0.00 0.00 0.00 1.89
3418 5531 4.515028 TTCTCCTCTAACGGTGATAGGA 57.485 45.455 0.09 0.09 35.14 2.94
3425 5538 7.631007 AGGATAAAATTTTCTCCTCTAACGGT 58.369 34.615 24.86 7.54 38.87 4.83
3426 5539 9.043079 GTAGGATAAAATTTTCTCCTCTAACGG 57.957 37.037 30.64 0.00 41.28 4.44
3428 5541 9.597170 ACGTAGGATAAAATTTTCTCCTCTAAC 57.403 33.333 30.64 23.90 41.28 2.34
3432 5545 6.822170 ACCACGTAGGATAAAATTTTCTCCTC 59.178 38.462 30.64 22.60 41.28 3.71
3433 5546 6.718294 ACCACGTAGGATAAAATTTTCTCCT 58.282 36.000 29.96 29.96 43.58 3.69
3435 5548 8.771766 GGATACCACGTAGGATAAAATTTTCTC 58.228 37.037 6.72 7.22 41.22 2.87
3436 5549 8.672823 GGATACCACGTAGGATAAAATTTTCT 57.327 34.615 6.72 0.00 41.22 2.52
3468 5581 1.218316 GGTGGTCAGCCGAGTTAGG 59.782 63.158 0.00 0.00 37.67 2.69
3477 5590 2.359230 GCTCTGTGGGTGGTCAGC 60.359 66.667 0.00 0.00 0.00 4.26
3522 5635 0.661187 CACCAATGACAACGCAGTGC 60.661 55.000 4.58 4.58 45.00 4.40
3529 5642 2.100584 TGGAAGCAACACCAATGACAAC 59.899 45.455 0.00 0.00 32.93 3.32
3537 5650 2.198827 ATTCGATGGAAGCAACACCA 57.801 45.000 0.00 0.00 40.57 4.17
3550 5663 5.133221 AGGCAAAGGCACTATTTATTCGAT 58.867 37.500 0.00 0.00 43.71 3.59
3560 5673 1.772453 GGGGTATAGGCAAAGGCACTA 59.228 52.381 0.00 0.00 43.71 2.74
3567 5680 1.153046 GCAGCGGGGTATAGGCAAA 60.153 57.895 0.00 0.00 0.00 3.68
3568 5681 1.632018 AAGCAGCGGGGTATAGGCAA 61.632 55.000 0.00 0.00 0.00 4.52
3569 5682 2.040009 GAAGCAGCGGGGTATAGGCA 62.040 60.000 0.00 0.00 0.00 4.75
3572 5685 0.318762 GAGGAAGCAGCGGGGTATAG 59.681 60.000 0.00 0.00 0.00 1.31
3573 5686 0.105658 AGAGGAAGCAGCGGGGTATA 60.106 55.000 0.00 0.00 0.00 1.47
3575 5688 2.038975 AGAGGAAGCAGCGGGGTA 59.961 61.111 0.00 0.00 0.00 3.69
3581 5694 2.124778 GAGGGCAGAGGAAGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
3611 5724 4.170062 CGGCAATGGCAGCGACTG 62.170 66.667 7.75 2.92 43.71 3.51
3646 5759 2.094906 CAGGATCGATAATTCGGCGGTA 60.095 50.000 7.21 0.00 45.53 4.02
3647 5760 0.966920 AGGATCGATAATTCGGCGGT 59.033 50.000 7.21 0.00 45.53 5.68
3648 5761 1.336887 ACAGGATCGATAATTCGGCGG 60.337 52.381 7.21 0.00 45.53 6.13
3649 5762 1.986378 GACAGGATCGATAATTCGGCG 59.014 52.381 0.00 0.00 45.53 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.