Multiple sequence alignment - TraesCS3B01G461900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G461900 chr3B 100.000 4600 0 0 1 4600 705002318 705006917 0.000000e+00 8495.0
1 TraesCS3B01G461900 chr3B 75.635 669 114 36 3134 3778 705154488 705155131 2.090000e-73 287.0
2 TraesCS3B01G461900 chr3B 77.849 465 90 9 3127 3588 705564667 705565121 4.530000e-70 276.0
3 TraesCS3B01G461900 chr3B 87.379 206 25 1 3384 3588 705567869 705568074 7.690000e-58 235.0
4 TraesCS3B01G461900 chr3A 93.775 2217 80 19 1 2191 667947691 667949875 0.000000e+00 3277.0
5 TraesCS3B01G461900 chr3A 94.862 1557 65 8 2466 4020 667950145 667951688 0.000000e+00 2418.0
6 TraesCS3B01G461900 chr3A 90.947 243 13 2 2179 2420 667949913 667950147 7.430000e-83 318.0
7 TraesCS3B01G461900 chr3A 78.587 467 81 15 3127 3588 669525524 669525976 1.620000e-74 291.0
8 TraesCS3B01G461900 chr3A 96.429 84 2 1 4005 4087 667951708 667951791 2.230000e-28 137.0
9 TraesCS3B01G461900 chr3D 93.562 2190 99 24 1 2181 532773944 532776100 0.000000e+00 3225.0
10 TraesCS3B01G461900 chr3D 93.120 1846 65 16 2179 4020 532776148 532777935 0.000000e+00 2649.0
11 TraesCS3B01G461900 chr3D 86.577 447 22 22 4005 4440 532777952 532778371 4.190000e-125 459.0
12 TraesCS3B01G461900 chr3D 77.778 522 100 10 3071 3588 533674580 533675089 1.610000e-79 307.0
13 TraesCS3B01G461900 chr3D 75.455 660 125 30 3138 3778 532956702 532957343 2.090000e-73 287.0
14 TraesCS3B01G461900 chr3D 87.379 206 25 1 3384 3588 533677836 533678041 7.690000e-58 235.0
15 TraesCS3B01G461900 chr6A 92.593 135 10 0 4466 4600 326312955 326312821 1.310000e-45 195.0
16 TraesCS3B01G461900 chr6A 92.593 135 10 0 4466 4600 390348272 390348138 1.310000e-45 195.0
17 TraesCS3B01G461900 chr2D 92.647 136 8 2 4466 4600 286785101 286784967 1.310000e-45 195.0
18 TraesCS3B01G461900 chr2D 91.852 135 11 0 4466 4600 150651794 150651660 6.080000e-44 189.0
19 TraesCS3B01G461900 chr6D 91.852 135 11 0 4466 4600 158758763 158758897 6.080000e-44 189.0
20 TraesCS3B01G461900 chr6D 91.852 135 11 0 4466 4600 354673424 354673558 6.080000e-44 189.0
21 TraesCS3B01G461900 chr6D 96.000 50 1 1 4364 4412 457284184 457284233 3.820000e-11 80.5
22 TraesCS3B01G461900 chr4D 91.852 135 11 0 4466 4600 113082376 113082510 6.080000e-44 189.0
23 TraesCS3B01G461900 chr4D 91.852 135 11 0 4466 4600 131521665 131521531 6.080000e-44 189.0
24 TraesCS3B01G461900 chr4D 91.852 135 11 0 4466 4600 229202109 229201975 6.080000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G461900 chr3B 705002318 705006917 4599 False 8495.0 8495 100.000000 1 4600 1 chr3B.!!$F1 4599
1 TraesCS3B01G461900 chr3B 705154488 705155131 643 False 287.0 287 75.635000 3134 3778 1 chr3B.!!$F2 644
2 TraesCS3B01G461900 chr3B 705564667 705568074 3407 False 255.5 276 82.614000 3127 3588 2 chr3B.!!$F3 461
3 TraesCS3B01G461900 chr3A 667947691 667951791 4100 False 1537.5 3277 94.003250 1 4087 4 chr3A.!!$F2 4086
4 TraesCS3B01G461900 chr3D 532773944 532778371 4427 False 2111.0 3225 91.086333 1 4440 3 chr3D.!!$F2 4439
5 TraesCS3B01G461900 chr3D 532956702 532957343 641 False 287.0 287 75.455000 3138 3778 1 chr3D.!!$F1 640
6 TraesCS3B01G461900 chr3D 533674580 533678041 3461 False 271.0 307 82.578500 3071 3588 2 chr3D.!!$F3 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
500 529 0.188342 CCATGGGGATTAGGGGGTTG 59.812 60.000 2.85 0.0 35.59 3.77 F
524 553 1.132977 GGTTGGGGAAAGGGAGGAAAA 60.133 52.381 0.00 0.0 0.00 2.29 F
2019 2051 0.405198 TGGTGGCCATTCTGTCATGT 59.595 50.000 9.72 0.0 0.00 3.21 F
2495 2578 0.323302 TCATTGCCTTACACGCCTCA 59.677 50.000 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1456 1487 0.541063 TCCTGGACGACTGTTGCCTA 60.541 55.0 0.00 0.0 0.00 3.93 R
2265 2348 0.821301 GCCTAGATTTGAGCCCCTGC 60.821 60.0 0.00 0.0 37.95 4.85 R
3512 6574 0.322975 GGCACTTCTTCTGAGCCTGA 59.677 55.0 0.00 0.0 42.01 3.86 R
4416 7532 1.009078 CATGCATGTACACTGTCCCG 58.991 55.0 18.91 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.764369 ACAGCTTCCAGTCCAGTGGA 60.764 55.000 8.12 8.12 45.37 4.02
50 57 2.125952 CACCGAGCGCAGTGATGA 60.126 61.111 17.30 0.00 36.01 2.92
63 70 1.002662 TGATGAGGAGGAGCTGGCT 59.997 57.895 0.00 0.00 0.00 4.75
64 71 1.335882 TGATGAGGAGGAGCTGGCTG 61.336 60.000 0.00 0.00 0.00 4.85
65 72 2.042404 GATGAGGAGGAGCTGGCTGG 62.042 65.000 0.00 0.00 0.00 4.85
66 73 3.478274 GAGGAGGAGCTGGCTGGG 61.478 72.222 0.00 0.00 0.00 4.45
67 74 3.991924 GAGGAGGAGCTGGCTGGGA 62.992 68.421 0.00 0.00 0.00 4.37
68 75 3.478274 GGAGGAGCTGGCTGGGAG 61.478 72.222 0.00 0.00 0.00 4.30
69 76 4.173924 GAGGAGCTGGCTGGGAGC 62.174 72.222 0.00 0.00 41.46 4.70
232 239 1.335132 CCAAACCCTAGCCGCTCCTA 61.335 60.000 0.00 0.00 0.00 2.94
245 252 4.024984 TCCTACCAGCCCCAGCCT 62.025 66.667 0.00 0.00 41.25 4.58
325 353 2.891448 GCCGCGCCGTGGTATTTA 60.891 61.111 19.14 0.00 35.34 1.40
418 446 1.865340 GCTCGGATTCACGGGATTTAC 59.135 52.381 0.00 0.00 36.12 2.01
465 494 1.963985 TTGGGATGGAATTTTGGGGG 58.036 50.000 0.00 0.00 0.00 5.40
466 495 1.096857 TGGGATGGAATTTTGGGGGA 58.903 50.000 0.00 0.00 0.00 4.81
476 505 5.370880 TGGAATTTTGGGGGATTTTCTTTCA 59.629 36.000 0.00 0.00 0.00 2.69
481 510 2.571202 TGGGGGATTTTCTTTCAATGGC 59.429 45.455 0.00 0.00 0.00 4.40
487 516 3.699411 TTTTCTTTCAATGGCCATGGG 57.301 42.857 21.63 15.23 0.00 4.00
498 527 2.091283 GCCATGGGGATTAGGGGGT 61.091 63.158 15.13 0.00 35.59 4.95
499 528 1.664956 GCCATGGGGATTAGGGGGTT 61.665 60.000 15.13 0.00 35.59 4.11
500 529 0.188342 CCATGGGGATTAGGGGGTTG 59.812 60.000 2.85 0.00 35.59 3.77
524 553 1.132977 GGTTGGGGAAAGGGAGGAAAA 60.133 52.381 0.00 0.00 0.00 2.29
528 557 1.646447 GGGGAAAGGGAGGAAAAGGAT 59.354 52.381 0.00 0.00 0.00 3.24
596 625 2.991540 GGGCTCAAAGGCGCCTTT 60.992 61.111 41.76 41.76 45.98 3.11
637 666 2.900716 TTTAGGGTTTGCTTGTTGGC 57.099 45.000 0.00 0.00 0.00 4.52
680 709 5.222130 GGGGAGGGCATGAAAAGATTAGATA 60.222 44.000 0.00 0.00 0.00 1.98
686 715 8.636213 AGGGCATGAAAAGATTAGATATTTGTG 58.364 33.333 0.00 0.00 0.00 3.33
865 895 1.538047 GCCAGACATGCCTTTTCAGA 58.462 50.000 0.00 0.00 0.00 3.27
895 925 9.807649 AGTATTGCATTTCTTTATTTGTCCATC 57.192 29.630 0.00 0.00 0.00 3.51
962 992 8.192743 TGTTAACTTACATACAGGGTGTTCTA 57.807 34.615 7.22 0.00 0.00 2.10
971 1001 3.844640 ACAGGGTGTTCTATTGGCTTTT 58.155 40.909 0.00 0.00 0.00 2.27
1079 1109 1.597854 CTGCAGACCGGCAACTTCA 60.598 57.895 8.42 0.00 44.40 3.02
1108 1138 2.291741 CAGTTTCTGGACCTGAACTTGC 59.708 50.000 12.96 5.08 0.00 4.01
1456 1487 3.845781 TTTCACTCTCTGTTTCAGGCT 57.154 42.857 0.00 0.00 31.51 4.58
1713 1744 5.409520 GTCATCAGACATTGACTGTTTAGCA 59.590 40.000 14.29 0.00 44.34 3.49
1734 1765 4.213270 GCATGCAAAATAGTGTCCGCTATA 59.787 41.667 14.21 0.00 31.94 1.31
1858 1889 3.543665 ACTTGCAATGTGCCATGTTTTT 58.456 36.364 0.00 0.00 44.23 1.94
2014 2046 2.969821 TTACTTGGTGGCCATTCTGT 57.030 45.000 9.72 9.18 31.53 3.41
2019 2051 0.405198 TGGTGGCCATTCTGTCATGT 59.595 50.000 9.72 0.00 0.00 3.21
2082 2114 4.456566 TGTTGTTGTCATGATCTGATGGTG 59.543 41.667 0.00 0.00 35.97 4.17
2096 2128 6.575244 TCTGATGGTGGATATTACTTTGGT 57.425 37.500 0.00 0.00 0.00 3.67
2114 2146 1.744522 GGTCTCCTAGAGGTGAACGAC 59.255 57.143 1.96 0.67 39.16 4.34
2127 2159 0.458025 GAACGACCACCTCCGATCAC 60.458 60.000 0.00 0.00 0.00 3.06
2157 2189 7.439356 CAGGTTAATATGGACATCACACTACAG 59.561 40.741 0.00 0.00 0.00 2.74
2258 2341 5.531659 CCTCATTTCCAGAGATGATTGAAGG 59.468 44.000 1.73 0.00 35.09 3.46
2259 2342 4.885907 TCATTTCCAGAGATGATTGAAGGC 59.114 41.667 0.00 0.00 0.00 4.35
2260 2343 4.581309 TTTCCAGAGATGATTGAAGGCT 57.419 40.909 0.00 0.00 0.00 4.58
2261 2344 4.581309 TTCCAGAGATGATTGAAGGCTT 57.419 40.909 0.00 0.00 0.00 4.35
2262 2345 3.882444 TCCAGAGATGATTGAAGGCTTG 58.118 45.455 3.46 0.00 0.00 4.01
2263 2346 3.520721 TCCAGAGATGATTGAAGGCTTGA 59.479 43.478 3.46 0.00 0.00 3.02
2264 2347 4.019051 TCCAGAGATGATTGAAGGCTTGAA 60.019 41.667 3.46 1.89 0.00 2.69
2265 2348 4.335874 CCAGAGATGATTGAAGGCTTGAAG 59.664 45.833 3.46 0.00 0.00 3.02
2346 2429 1.031235 CTGTTGTGTGTTGGGCATCA 58.969 50.000 0.00 0.00 0.00 3.07
2350 2433 3.118482 TGTTGTGTGTTGGGCATCAAAAT 60.118 39.130 0.00 0.00 37.08 1.82
2428 2511 4.459390 TCCATGATGCTTGGTGAAATTG 57.541 40.909 0.00 0.00 35.64 2.32
2433 2516 4.808558 TGATGCTTGGTGAAATTGCTTAC 58.191 39.130 0.00 0.00 0.00 2.34
2434 2517 4.280425 TGATGCTTGGTGAAATTGCTTACA 59.720 37.500 0.00 0.00 0.00 2.41
2435 2518 4.870123 TGCTTGGTGAAATTGCTTACAT 57.130 36.364 0.00 0.00 0.00 2.29
2436 2519 4.558178 TGCTTGGTGAAATTGCTTACATG 58.442 39.130 0.00 0.00 0.00 3.21
2437 2520 4.280425 TGCTTGGTGAAATTGCTTACATGA 59.720 37.500 0.00 0.00 0.00 3.07
2438 2521 5.221402 TGCTTGGTGAAATTGCTTACATGAA 60.221 36.000 0.00 0.00 0.00 2.57
2439 2522 5.695816 GCTTGGTGAAATTGCTTACATGAAA 59.304 36.000 0.00 0.00 0.00 2.69
2440 2523 6.202570 GCTTGGTGAAATTGCTTACATGAAAA 59.797 34.615 0.00 0.00 0.00 2.29
2441 2524 7.569957 GCTTGGTGAAATTGCTTACATGAAAAG 60.570 37.037 0.00 3.89 0.00 2.27
2450 2533 5.520022 GCTTACATGAAAAGCAAATGGTG 57.480 39.130 23.54 0.00 46.85 4.17
2451 2534 4.389687 GCTTACATGAAAAGCAAATGGTGG 59.610 41.667 23.54 0.00 46.85 4.61
2452 2535 3.405823 ACATGAAAAGCAAATGGTGGG 57.594 42.857 0.00 0.00 0.00 4.61
2453 2536 2.038820 ACATGAAAAGCAAATGGTGGGG 59.961 45.455 0.00 0.00 0.00 4.96
2494 2577 1.448985 TTCATTGCCTTACACGCCTC 58.551 50.000 0.00 0.00 0.00 4.70
2495 2578 0.323302 TCATTGCCTTACACGCCTCA 59.677 50.000 0.00 0.00 0.00 3.86
2496 2579 1.065491 TCATTGCCTTACACGCCTCAT 60.065 47.619 0.00 0.00 0.00 2.90
2497 2580 1.331756 CATTGCCTTACACGCCTCATC 59.668 52.381 0.00 0.00 0.00 2.92
2498 2581 0.392461 TTGCCTTACACGCCTCATCC 60.392 55.000 0.00 0.00 0.00 3.51
2499 2582 1.264749 TGCCTTACACGCCTCATCCT 61.265 55.000 0.00 0.00 0.00 3.24
2542 2625 8.976353 TGTTCTATGGTTGCCATTTACATTAAT 58.024 29.630 5.94 0.00 42.23 1.40
2724 2807 1.069358 TCCCATTTTGTTTGTTCGGCC 59.931 47.619 0.00 0.00 0.00 6.13
2750 2833 7.489160 GGTGGTTTGTTCTGTTTCTTAAGAAT 58.511 34.615 18.37 0.00 35.03 2.40
2942 3025 4.811557 GTCTGGTATGGATTGTCAACTAGC 59.188 45.833 0.00 0.00 0.00 3.42
2947 3030 6.318648 TGGTATGGATTGTCAACTAGCAAATC 59.681 38.462 0.00 0.00 0.00 2.17
2969 3052 4.053983 CGATATTGATGGTGGTCAGTCTG 58.946 47.826 0.00 0.00 0.00 3.51
3044 3127 8.443953 AAATATCCTGTCTCAGAACTTTATGC 57.556 34.615 0.00 0.00 32.44 3.14
3108 3191 0.530744 TCTTGACCGTCTTCCCATCG 59.469 55.000 0.00 0.00 0.00 3.84
3109 3192 0.530744 CTTGACCGTCTTCCCATCGA 59.469 55.000 0.00 0.00 0.00 3.59
3110 3193 0.530744 TTGACCGTCTTCCCATCGAG 59.469 55.000 0.00 0.00 0.00 4.04
3149 3232 0.969149 GCTTTTGTTCCAGGGGAAGG 59.031 55.000 0.00 0.00 42.88 3.46
3288 3371 2.351726 CAGCATACCGGTAAGAACTTGC 59.648 50.000 22.32 22.32 0.00 4.01
3340 3429 9.853555 CAAATTAGCACCATACATCAGTTTTTA 57.146 29.630 0.00 0.00 0.00 1.52
3349 3439 8.421002 ACCATACATCAGTTTTTAAAAGCTTGT 58.579 29.630 19.50 19.50 29.51 3.16
3494 6556 1.538047 GCCACATCTTCTGCCAGAAA 58.462 50.000 8.74 0.55 33.19 2.52
3512 6574 2.170012 AATGCATCAAGGCCTCCATT 57.830 45.000 5.23 7.67 0.00 3.16
3610 6672 5.001232 GGCAGATAATTAAACCTATCCGCA 58.999 41.667 10.52 0.00 32.05 5.69
3613 6675 7.335924 GGCAGATAATTAAACCTATCCGCAATA 59.664 37.037 10.52 0.00 32.05 1.90
3622 6686 2.037772 CCTATCCGCAATACTTGGAGCT 59.962 50.000 0.00 0.00 34.75 4.09
3719 6786 6.071728 AGGGTCATCATGAACATTCAGTTTTC 60.072 38.462 4.72 0.00 41.51 2.29
3720 6787 6.095377 GGTCATCATGAACATTCAGTTTTCC 58.905 40.000 0.00 0.00 41.51 3.13
3747 6814 4.749245 ACAATTTAACAAGTGCTCGAGG 57.251 40.909 15.58 0.00 30.75 4.63
3795 6862 4.763793 GTGGTAGTGGACACTGTTAGTAGA 59.236 45.833 14.86 0.00 42.52 2.59
3880 6948 1.944032 ACGTTTCCTGCGTGTTTAGT 58.056 45.000 0.00 0.00 41.33 2.24
3958 7029 1.909700 ATGTTTGGGCTCGTTGTCAT 58.090 45.000 0.00 0.00 0.00 3.06
4067 7173 2.371179 AGGATGCCTGACCAGTATCATG 59.629 50.000 11.16 0.00 29.57 3.07
4101 7208 5.995282 CCCTATTAGGAACGCATGAATGTTA 59.005 40.000 11.52 0.00 37.67 2.41
4109 7216 5.572896 GGAACGCATGAATGTTAGGAAAAAG 59.427 40.000 0.00 0.00 0.00 2.27
4141 7248 6.127619 GGGAAGAAACACTGGGAATAAGAATG 60.128 42.308 0.00 0.00 0.00 2.67
4142 7249 6.434340 GGAAGAAACACTGGGAATAAGAATGT 59.566 38.462 0.00 0.00 0.00 2.71
4149 7265 9.927668 AACACTGGGAATAAGAATGTTAATTTG 57.072 29.630 0.00 0.00 0.00 2.32
4200 7316 9.661954 AGTCAATATAGGAGAGGAAAACATAGA 57.338 33.333 0.00 0.00 0.00 1.98
4267 7383 9.574516 AGAAACCACATGAATCTTAGTAGTTTT 57.425 29.630 0.00 0.00 28.68 2.43
4307 7423 2.081462 GGTGGTTGGATTACGGACAAG 58.919 52.381 0.00 0.00 0.00 3.16
4358 7474 7.602265 ACATGCATTAAATTTGACCCAAACTAC 59.398 33.333 0.00 0.00 36.13 2.73
4359 7475 6.459923 TGCATTAAATTTGACCCAAACTACC 58.540 36.000 0.00 0.00 36.13 3.18
4412 7528 4.467084 CTTGCCCGGGCTCGCTAA 62.467 66.667 43.34 28.41 42.51 3.09
4416 7532 2.280186 CCCGGGCTCGCTAATCAC 60.280 66.667 8.08 0.00 34.56 3.06
4424 7540 0.456221 CTCGCTAATCACGGGACAGT 59.544 55.000 0.00 0.00 30.77 3.55
4431 7547 2.672961 ATCACGGGACAGTGTACATG 57.327 50.000 8.02 5.23 42.40 3.21
4433 7549 0.320334 CACGGGACAGTGTACATGCA 60.320 55.000 8.02 0.00 37.35 3.96
4440 7556 4.881273 GGGACAGTGTACATGCATGATAAA 59.119 41.667 32.75 13.40 0.00 1.40
4441 7557 5.220854 GGGACAGTGTACATGCATGATAAAC 60.221 44.000 32.75 22.59 0.00 2.01
4442 7558 5.353956 GGACAGTGTACATGCATGATAAACA 59.646 40.000 32.75 23.95 0.00 2.83
4443 7559 6.128035 GGACAGTGTACATGCATGATAAACAA 60.128 38.462 32.75 12.03 0.00 2.83
4444 7560 6.611381 ACAGTGTACATGCATGATAAACAAC 58.389 36.000 32.75 20.07 0.00 3.32
4445 7561 5.734035 CAGTGTACATGCATGATAAACAACG 59.266 40.000 32.75 17.87 0.00 4.10
4446 7562 5.411361 AGTGTACATGCATGATAAACAACGT 59.589 36.000 32.75 14.38 0.00 3.99
4447 7563 5.507876 GTGTACATGCATGATAAACAACGTG 59.492 40.000 32.75 3.42 34.19 4.49
4448 7564 4.095410 ACATGCATGATAAACAACGTGG 57.905 40.909 32.75 1.29 33.09 4.94
4449 7565 2.627863 TGCATGATAAACAACGTGGC 57.372 45.000 0.00 0.00 0.00 5.01
4450 7566 1.882623 TGCATGATAAACAACGTGGCA 59.117 42.857 0.00 0.00 0.00 4.92
4451 7567 2.294512 TGCATGATAAACAACGTGGCAA 59.705 40.909 0.00 0.00 0.00 4.52
4452 7568 3.243535 TGCATGATAAACAACGTGGCAAA 60.244 39.130 0.00 0.00 0.00 3.68
4453 7569 3.925913 GCATGATAAACAACGTGGCAAAT 59.074 39.130 0.00 0.00 0.00 2.32
4454 7570 4.388469 GCATGATAAACAACGTGGCAAATT 59.612 37.500 0.00 0.00 0.00 1.82
4455 7571 5.444481 GCATGATAAACAACGTGGCAAATTC 60.444 40.000 0.00 0.00 0.00 2.17
4456 7572 5.446143 TGATAAACAACGTGGCAAATTCT 57.554 34.783 0.00 0.00 0.00 2.40
4457 7573 5.837437 TGATAAACAACGTGGCAAATTCTT 58.163 33.333 0.00 0.00 0.00 2.52
4458 7574 6.276847 TGATAAACAACGTGGCAAATTCTTT 58.723 32.000 0.00 0.00 0.00 2.52
4459 7575 7.426410 TGATAAACAACGTGGCAAATTCTTTA 58.574 30.769 0.00 0.00 0.00 1.85
4460 7576 7.921214 TGATAAACAACGTGGCAAATTCTTTAA 59.079 29.630 0.00 0.00 0.00 1.52
4461 7577 5.959652 AACAACGTGGCAAATTCTTTAAC 57.040 34.783 0.00 0.00 0.00 2.01
4462 7578 5.000012 ACAACGTGGCAAATTCTTTAACA 58.000 34.783 0.00 0.00 0.00 2.41
4463 7579 4.801516 ACAACGTGGCAAATTCTTTAACAC 59.198 37.500 0.00 0.00 0.00 3.32
4464 7580 4.640789 ACGTGGCAAATTCTTTAACACA 57.359 36.364 0.00 0.00 32.22 3.72
4465 7581 4.356289 ACGTGGCAAATTCTTTAACACAC 58.644 39.130 0.00 0.00 32.22 3.82
4466 7582 4.097286 ACGTGGCAAATTCTTTAACACACT 59.903 37.500 0.00 0.00 32.22 3.55
4467 7583 5.297278 ACGTGGCAAATTCTTTAACACACTA 59.703 36.000 0.00 0.00 32.22 2.74
4468 7584 5.851177 CGTGGCAAATTCTTTAACACACTAG 59.149 40.000 0.00 0.00 32.22 2.57
4469 7585 6.512741 CGTGGCAAATTCTTTAACACACTAGT 60.513 38.462 0.00 0.00 32.22 2.57
4473 7589 7.040961 GGCAAATTCTTTAACACACTAGTGGTA 60.041 37.037 26.12 12.52 45.81 3.25
4490 7606 8.296799 CTAGTGGTACTAGTAAGATAGACGTG 57.703 42.308 3.61 0.00 42.41 4.49
4491 7607 5.526846 AGTGGTACTAGTAAGATAGACGTGC 59.473 44.000 3.61 0.00 0.00 5.34
4492 7608 5.295292 GTGGTACTAGTAAGATAGACGTGCA 59.705 44.000 3.61 0.00 0.00 4.57
4493 7609 6.017275 GTGGTACTAGTAAGATAGACGTGCAT 60.017 42.308 3.61 0.00 0.00 3.96
4494 7610 6.544931 TGGTACTAGTAAGATAGACGTGCATT 59.455 38.462 3.61 0.00 0.00 3.56
4495 7611 6.856938 GGTACTAGTAAGATAGACGTGCATTG 59.143 42.308 3.61 0.00 0.00 2.82
4496 7612 5.282510 ACTAGTAAGATAGACGTGCATTGC 58.717 41.667 0.46 0.46 0.00 3.56
4497 7613 4.123497 AGTAAGATAGACGTGCATTGCA 57.877 40.909 7.38 7.38 35.60 4.08
4498 7614 4.697514 AGTAAGATAGACGTGCATTGCAT 58.302 39.130 15.49 0.00 41.91 3.96
4516 7632 7.959733 CATTGCATGCATGATATTTGATAACC 58.040 34.615 30.64 7.94 0.00 2.85
4517 7633 6.651975 TGCATGCATGATATTTGATAACCA 57.348 33.333 30.64 10.52 0.00 3.67
4518 7634 7.052142 TGCATGCATGATATTTGATAACCAA 57.948 32.000 30.64 0.00 0.00 3.67
4554 7670 9.681062 AAATACCACACTATAACATGTAAGCTT 57.319 29.630 3.48 3.48 0.00 3.74
4555 7671 9.681062 AATACCACACTATAACATGTAAGCTTT 57.319 29.630 3.20 0.00 0.00 3.51
4556 7672 7.377766 ACCACACTATAACATGTAAGCTTTG 57.622 36.000 3.20 0.00 0.00 2.77
4557 7673 7.165485 ACCACACTATAACATGTAAGCTTTGA 58.835 34.615 3.20 0.00 0.00 2.69
4558 7674 7.663905 ACCACACTATAACATGTAAGCTTTGAA 59.336 33.333 3.20 0.00 0.00 2.69
4559 7675 8.677300 CCACACTATAACATGTAAGCTTTGAAT 58.323 33.333 3.20 0.00 0.00 2.57
4560 7676 9.708222 CACACTATAACATGTAAGCTTTGAATC 57.292 33.333 3.20 0.00 0.00 2.52
4561 7677 9.448438 ACACTATAACATGTAAGCTTTGAATCA 57.552 29.630 3.20 0.00 0.00 2.57
4568 7684 9.903682 AACATGTAAGCTTTGAATCATATATGC 57.096 29.630 3.20 0.00 0.00 3.14
4569 7685 9.070179 ACATGTAAGCTTTGAATCATATATGCA 57.930 29.630 3.20 0.00 0.00 3.96
4572 7688 9.287373 TGTAAGCTTTGAATCATATATGCATGA 57.713 29.630 10.16 0.00 39.20 3.07
4575 7691 8.349568 AGCTTTGAATCATATATGCATGATGT 57.650 30.769 10.16 0.00 43.33 3.06
4576 7692 9.457436 AGCTTTGAATCATATATGCATGATGTA 57.543 29.630 10.16 4.19 43.33 2.29
4577 7693 9.717892 GCTTTGAATCATATATGCATGATGTAG 57.282 33.333 10.16 2.78 43.33 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.227205 CCTCCTCATCACTGCGCTC 60.227 63.158 9.73 0.00 0.00 5.03
40 47 1.227205 GCTCCTCCTCATCACTGCG 60.227 63.158 0.00 0.00 0.00 5.18
50 57 3.999705 CTCCCAGCCAGCTCCTCCT 63.000 68.421 0.00 0.00 0.00 3.69
110 117 2.364002 TGACGGAGGATGATTTATGCGA 59.636 45.455 0.00 0.00 31.51 5.10
111 118 2.476619 GTGACGGAGGATGATTTATGCG 59.523 50.000 0.00 0.00 31.51 4.73
245 252 2.043248 GCTGGGGTCGGTAGGAGA 60.043 66.667 0.00 0.00 0.00 3.71
325 353 4.887655 GGACGATTACCCCAAAATTCAGAT 59.112 41.667 0.00 0.00 0.00 2.90
418 446 3.990469 CGTATCTCCCTCGAAAATCCATG 59.010 47.826 0.00 0.00 0.00 3.66
465 494 4.193865 CCCATGGCCATTGAAAGAAAATC 58.806 43.478 17.92 0.00 0.00 2.17
466 495 3.054213 CCCCATGGCCATTGAAAGAAAAT 60.054 43.478 17.92 0.00 0.00 1.82
476 505 0.488668 CCCTAATCCCCATGGCCATT 59.511 55.000 17.92 3.45 0.00 3.16
481 510 0.188342 CAACCCCCTAATCCCCATGG 59.812 60.000 4.14 4.14 0.00 3.66
487 516 0.708209 ACCAACCAACCCCCTAATCC 59.292 55.000 0.00 0.00 0.00 3.01
498 527 0.399233 CCCTTTCCCCAACCAACCAA 60.399 55.000 0.00 0.00 0.00 3.67
499 528 1.234529 CCCTTTCCCCAACCAACCA 59.765 57.895 0.00 0.00 0.00 3.67
500 529 0.541998 CTCCCTTTCCCCAACCAACC 60.542 60.000 0.00 0.00 0.00 3.77
539 568 1.079888 CCGCATCCAACAAAAGGCC 60.080 57.895 0.00 0.00 0.00 5.19
596 625 0.965439 CCCAATCAAACCTCGCCAAA 59.035 50.000 0.00 0.00 0.00 3.28
637 666 1.000827 CCTCCATCGAATCGACTCCAG 60.001 57.143 7.77 1.69 39.18 3.86
680 709 7.765695 ACATGGAGATGTAGAAAACACAAAT 57.234 32.000 0.00 0.00 41.27 2.32
686 715 9.250624 GATACAGTACATGGAGATGTAGAAAAC 57.749 37.037 8.50 0.00 44.16 2.43
921 951 7.770801 AAGTTAACAAAACTTTGGAATCAGC 57.229 32.000 8.61 0.00 42.34 4.26
1079 1109 0.318762 GTCCAGAAACTGTCGCTCCT 59.681 55.000 0.00 0.00 0.00 3.69
1108 1138 2.079925 GGCTACTTCAACAGCTGGAAG 58.920 52.381 23.37 23.37 44.68 3.46
1131 1161 1.127567 TGGAGAGTGAACCCCCAGTG 61.128 60.000 0.00 0.00 0.00 3.66
1456 1487 0.541063 TCCTGGACGACTGTTGCCTA 60.541 55.000 0.00 0.00 0.00 3.93
1713 1744 9.534565 CTATATATAGCGGACACTATTTTGCAT 57.465 33.333 6.82 0.00 34.66 3.96
1910 1941 3.056328 GTGCGAAACCCAGCCCTC 61.056 66.667 0.00 0.00 0.00 4.30
1933 1964 3.119173 TGAACCCACTGAAGCAACAAAAG 60.119 43.478 0.00 0.00 0.00 2.27
2014 2046 3.762407 TTCTCCTTTCAACGGACATGA 57.238 42.857 0.00 0.00 0.00 3.07
2019 2051 3.521937 ACCCATATTCTCCTTTCAACGGA 59.478 43.478 0.00 0.00 0.00 4.69
2082 2114 6.783482 ACCTCTAGGAGACCAAAGTAATATCC 59.217 42.308 2.23 0.00 38.94 2.59
2096 2128 1.353358 TGGTCGTTCACCTCTAGGAGA 59.647 52.381 2.23 0.00 46.98 3.71
2127 2159 4.750098 GTGATGTCCATATTAACCTGTCCG 59.250 45.833 0.00 0.00 0.00 4.79
2157 2189 8.850454 TTACTGTATTGCTTCTTTGTTTGTTC 57.150 30.769 0.00 0.00 0.00 3.18
2265 2348 0.821301 GCCTAGATTTGAGCCCCTGC 60.821 60.000 0.00 0.00 37.95 4.85
2350 2433 9.494271 CCAAGTTCAGAGCTATATTATAAGCAA 57.506 33.333 0.00 0.00 41.32 3.91
2396 2479 6.038356 CCAAGCATCATGGAAAACTTGATAC 58.962 40.000 13.04 0.00 40.75 2.24
2400 2483 3.991773 CACCAAGCATCATGGAAAACTTG 59.008 43.478 0.00 0.80 40.56 3.16
2428 2511 4.389687 CCACCATTTGCTTTTCATGTAAGC 59.610 41.667 20.85 20.85 46.33 3.09
2433 2516 2.302445 TCCCCACCATTTGCTTTTCATG 59.698 45.455 0.00 0.00 0.00 3.07
2434 2517 2.302733 GTCCCCACCATTTGCTTTTCAT 59.697 45.455 0.00 0.00 0.00 2.57
2435 2518 1.691434 GTCCCCACCATTTGCTTTTCA 59.309 47.619 0.00 0.00 0.00 2.69
2436 2519 1.001974 GGTCCCCACCATTTGCTTTTC 59.998 52.381 0.00 0.00 43.17 2.29
2437 2520 1.055849 GGTCCCCACCATTTGCTTTT 58.944 50.000 0.00 0.00 43.17 2.27
2438 2521 2.758648 GGTCCCCACCATTTGCTTT 58.241 52.632 0.00 0.00 43.17 3.51
2439 2522 4.539235 GGTCCCCACCATTTGCTT 57.461 55.556 0.00 0.00 43.17 3.91
2447 2530 1.001974 GAAAAGCAAATGGTCCCCACC 59.998 52.381 0.00 0.00 44.10 4.61
2448 2531 1.691434 TGAAAAGCAAATGGTCCCCAC 59.309 47.619 0.00 0.00 35.80 4.61
2449 2532 2.094100 TGAAAAGCAAATGGTCCCCA 57.906 45.000 0.00 0.00 38.19 4.96
2450 2533 2.302733 ACATGAAAAGCAAATGGTCCCC 59.697 45.455 0.00 0.00 0.00 4.81
2451 2534 3.683365 ACATGAAAAGCAAATGGTCCC 57.317 42.857 0.00 0.00 0.00 4.46
2452 2535 7.387397 TGAAAATACATGAAAAGCAAATGGTCC 59.613 33.333 0.00 0.00 0.00 4.46
2453 2536 8.309163 TGAAAATACATGAAAAGCAAATGGTC 57.691 30.769 0.00 0.00 0.00 4.02
2520 2603 7.642071 GCATTAATGTAAATGGCAACCATAG 57.358 36.000 16.61 0.00 44.40 2.23
2542 2625 0.039165 CATCTGCGCTATAGTCGGCA 60.039 55.000 9.73 13.85 0.00 5.69
2589 2672 3.189770 AACCCCCGACCTTCCCTCT 62.190 63.158 0.00 0.00 0.00 3.69
2705 2788 1.507562 GGCCGAACAAACAAAATGGG 58.492 50.000 0.00 0.00 0.00 4.00
2724 2807 3.775661 AAGAAACAGAACAAACCACCG 57.224 42.857 0.00 0.00 0.00 4.94
2750 2833 4.967084 TTAGAAAGGCTGTTACAGACCA 57.033 40.909 15.44 0.00 41.11 4.02
2850 2933 4.155462 ACAGAACTTTCATGCAGCATACAG 59.845 41.667 7.82 6.82 0.00 2.74
2921 3004 4.769688 TGCTAGTTGACAATCCATACCAG 58.230 43.478 0.00 0.00 0.00 4.00
2942 3025 5.528690 ACTGACCACCATCAATATCGATTTG 59.471 40.000 1.71 8.47 0.00 2.32
2947 3030 4.053983 CAGACTGACCACCATCAATATCG 58.946 47.826 0.00 0.00 0.00 2.92
3149 3232 3.750130 AGTGTTCACATGCTCATCAAGAC 59.250 43.478 5.74 0.00 0.00 3.01
3288 3371 6.809689 TCACGGTATTGATAAAGTACAGTGTG 59.190 38.462 5.88 5.38 41.79 3.82
3340 3429 4.629634 GCTGTGGTGTTTAAACAAGCTTTT 59.370 37.500 25.24 0.00 41.21 2.27
3349 3439 2.035632 CCTTGGGCTGTGGTGTTTAAA 58.964 47.619 0.00 0.00 0.00 1.52
3494 6556 1.063492 TGAATGGAGGCCTTGATGCAT 60.063 47.619 6.77 0.00 0.00 3.96
3512 6574 0.322975 GGCACTTCTTCTGAGCCTGA 59.677 55.000 0.00 0.00 42.01 3.86
3622 6686 1.375908 CAGCTGCCACGGCTCTAAA 60.376 57.895 9.92 0.00 43.23 1.85
3658 6722 3.695556 CAGATACAATCACCACAATGCCA 59.304 43.478 0.00 0.00 0.00 4.92
3720 6787 3.070878 AGCACTTGTTAAATTGTTGGGGG 59.929 43.478 0.00 0.00 0.00 5.40
3747 6814 3.058914 GGTATGCAGATTGGTAATCACGC 60.059 47.826 0.00 6.66 40.42 5.34
3890 6958 8.506168 TGATATACCTAAACAAGCAGGAAAAG 57.494 34.615 0.00 0.00 35.76 2.27
3958 7029 3.627237 GGCCCAATGGGTCTGAATTTAGA 60.627 47.826 21.02 0.00 45.53 2.10
3982 7053 3.847671 TGTGTTGGTGTGACAGGATAA 57.152 42.857 0.00 0.00 0.00 1.75
4101 7208 6.611236 TGTTTCTTCCCATTCTTCTTTTTCCT 59.389 34.615 0.00 0.00 0.00 3.36
4109 7216 3.507622 CCCAGTGTTTCTTCCCATTCTTC 59.492 47.826 0.00 0.00 0.00 2.87
4165 7281 8.734763 TCCTCTCCTATATTGACTACCTTAACT 58.265 37.037 0.00 0.00 0.00 2.24
4166 7282 8.937207 TCCTCTCCTATATTGACTACCTTAAC 57.063 38.462 0.00 0.00 0.00 2.01
4167 7283 9.947189 TTTCCTCTCCTATATTGACTACCTTAA 57.053 33.333 0.00 0.00 0.00 1.85
4269 7385 8.711170 CCAACCACCTAGTAAGATTCCTATAAA 58.289 37.037 0.00 0.00 0.00 1.40
4270 7386 8.069356 TCCAACCACCTAGTAAGATTCCTATAA 58.931 37.037 0.00 0.00 0.00 0.98
4271 7387 7.598248 TCCAACCACCTAGTAAGATTCCTATA 58.402 38.462 0.00 0.00 0.00 1.31
4272 7388 6.449956 TCCAACCACCTAGTAAGATTCCTAT 58.550 40.000 0.00 0.00 0.00 2.57
4273 7389 5.845734 TCCAACCACCTAGTAAGATTCCTA 58.154 41.667 0.00 0.00 0.00 2.94
4274 7390 4.695606 TCCAACCACCTAGTAAGATTCCT 58.304 43.478 0.00 0.00 0.00 3.36
4275 7391 5.632034 ATCCAACCACCTAGTAAGATTCC 57.368 43.478 0.00 0.00 0.00 3.01
4276 7392 6.700520 CGTAATCCAACCACCTAGTAAGATTC 59.299 42.308 0.00 0.00 0.00 2.52
4277 7393 6.407752 CCGTAATCCAACCACCTAGTAAGATT 60.408 42.308 0.00 0.00 0.00 2.40
4278 7394 5.070047 CCGTAATCCAACCACCTAGTAAGAT 59.930 44.000 0.00 0.00 0.00 2.40
4279 7395 4.403432 CCGTAATCCAACCACCTAGTAAGA 59.597 45.833 0.00 0.00 0.00 2.10
4280 7396 4.403432 TCCGTAATCCAACCACCTAGTAAG 59.597 45.833 0.00 0.00 0.00 2.34
4281 7397 4.160252 GTCCGTAATCCAACCACCTAGTAA 59.840 45.833 0.00 0.00 0.00 2.24
4282 7398 3.701040 GTCCGTAATCCAACCACCTAGTA 59.299 47.826 0.00 0.00 0.00 1.82
4283 7399 2.498885 GTCCGTAATCCAACCACCTAGT 59.501 50.000 0.00 0.00 0.00 2.57
4284 7400 2.498481 TGTCCGTAATCCAACCACCTAG 59.502 50.000 0.00 0.00 0.00 3.02
4285 7401 2.538222 TGTCCGTAATCCAACCACCTA 58.462 47.619 0.00 0.00 0.00 3.08
4286 7402 1.354101 TGTCCGTAATCCAACCACCT 58.646 50.000 0.00 0.00 0.00 4.00
4287 7403 2.081462 CTTGTCCGTAATCCAACCACC 58.919 52.381 0.00 0.00 0.00 4.61
4294 7410 5.874895 AAAGCTTAACTTGTCCGTAATCC 57.125 39.130 0.00 0.00 39.09 3.01
4307 7423 7.722795 TTTTATTTCCTGGCAAAAGCTTAAC 57.277 32.000 0.00 0.00 0.00 2.01
4349 7465 2.014128 CGCCACTATTGGTAGTTTGGG 58.986 52.381 0.55 0.00 45.98 4.12
4409 7525 3.861276 TGTACACTGTCCCGTGATTAG 57.139 47.619 0.00 0.00 38.27 1.73
4412 7528 1.405526 GCATGTACACTGTCCCGTGAT 60.406 52.381 0.00 0.00 38.27 3.06
4416 7532 1.009078 CATGCATGTACACTGTCCCG 58.991 55.000 18.91 0.00 0.00 5.14
4424 7540 5.391416 CCACGTTGTTTATCATGCATGTACA 60.391 40.000 25.43 20.19 0.00 2.90
4431 7547 2.627863 TGCCACGTTGTTTATCATGC 57.372 45.000 0.00 0.00 0.00 4.06
4433 7549 6.024552 AGAATTTGCCACGTTGTTTATCAT 57.975 33.333 0.00 0.00 0.00 2.45
4440 7556 4.801516 GTGTTAAAGAATTTGCCACGTTGT 59.198 37.500 0.00 0.00 39.63 3.32
4441 7557 4.800993 TGTGTTAAAGAATTTGCCACGTTG 59.199 37.500 0.00 0.00 40.57 4.10
4442 7558 4.801516 GTGTGTTAAAGAATTTGCCACGTT 59.198 37.500 0.00 0.00 40.57 3.99
4443 7559 4.097286 AGTGTGTTAAAGAATTTGCCACGT 59.903 37.500 0.00 0.00 40.57 4.49
4444 7560 4.606961 AGTGTGTTAAAGAATTTGCCACG 58.393 39.130 0.00 0.00 40.57 4.94
4445 7561 6.636850 CACTAGTGTGTTAAAGAATTTGCCAC 59.363 38.462 15.06 0.00 37.92 5.01
4446 7562 6.238897 CCACTAGTGTGTTAAAGAATTTGCCA 60.239 38.462 21.18 0.00 39.74 4.92
4447 7563 6.149633 CCACTAGTGTGTTAAAGAATTTGCC 58.850 40.000 21.18 0.00 39.74 4.52
4448 7564 6.735130 ACCACTAGTGTGTTAAAGAATTTGC 58.265 36.000 21.18 0.00 39.74 3.68
4449 7565 9.052759 AGTACCACTAGTGTGTTAAAGAATTTG 57.947 33.333 21.18 3.58 39.74 2.32
4451 7567 9.924650 CTAGTACCACTAGTGTGTTAAAGAATT 57.075 33.333 21.18 3.42 42.41 2.17
4466 7582 6.703607 GCACGTCTATCTTACTAGTACCACTA 59.296 42.308 0.91 0.00 0.00 2.74
4467 7583 5.526846 GCACGTCTATCTTACTAGTACCACT 59.473 44.000 0.91 0.00 0.00 4.00
4468 7584 5.295292 TGCACGTCTATCTTACTAGTACCAC 59.705 44.000 0.91 0.00 0.00 4.16
4469 7585 5.430886 TGCACGTCTATCTTACTAGTACCA 58.569 41.667 0.91 0.00 0.00 3.25
4470 7586 5.998454 TGCACGTCTATCTTACTAGTACC 57.002 43.478 0.91 0.00 0.00 3.34
4471 7587 6.360148 GCAATGCACGTCTATCTTACTAGTAC 59.640 42.308 0.91 0.00 0.00 2.73
4472 7588 6.038936 TGCAATGCACGTCTATCTTACTAGTA 59.961 38.462 2.72 0.00 31.71 1.82
4473 7589 5.163550 TGCAATGCACGTCTATCTTACTAGT 60.164 40.000 2.72 0.00 31.71 2.57
4474 7590 5.281727 TGCAATGCACGTCTATCTTACTAG 58.718 41.667 2.72 0.00 31.71 2.57
4475 7591 5.257082 TGCAATGCACGTCTATCTTACTA 57.743 39.130 2.72 0.00 31.71 1.82
4476 7592 4.123497 TGCAATGCACGTCTATCTTACT 57.877 40.909 2.72 0.00 31.71 2.24
4477 7593 4.766007 CATGCAATGCACGTCTATCTTAC 58.234 43.478 11.23 0.00 43.04 2.34
4479 7595 3.957671 CATGCAATGCACGTCTATCTT 57.042 42.857 11.23 0.00 43.04 2.40
4492 7608 7.672240 TGGTTATCAAATATCATGCATGCAAT 58.328 30.769 26.68 17.17 0.00 3.56
4493 7609 7.052142 TGGTTATCAAATATCATGCATGCAA 57.948 32.000 26.68 9.94 0.00 4.08
4494 7610 6.651975 TGGTTATCAAATATCATGCATGCA 57.348 33.333 25.04 25.04 0.00 3.96
4495 7611 7.949903 TTTGGTTATCAAATATCATGCATGC 57.050 32.000 22.25 11.82 40.14 4.06
4528 7644 9.681062 AAGCTTACATGTTATAGTGTGGTATTT 57.319 29.630 2.30 0.00 0.00 1.40
4529 7645 9.681062 AAAGCTTACATGTTATAGTGTGGTATT 57.319 29.630 2.30 0.00 0.00 1.89
4530 7646 9.109393 CAAAGCTTACATGTTATAGTGTGGTAT 57.891 33.333 2.30 0.00 0.00 2.73
4531 7647 8.315482 TCAAAGCTTACATGTTATAGTGTGGTA 58.685 33.333 2.30 0.00 0.00 3.25
4532 7648 7.165485 TCAAAGCTTACATGTTATAGTGTGGT 58.835 34.615 2.30 0.00 0.00 4.16
4533 7649 7.609760 TCAAAGCTTACATGTTATAGTGTGG 57.390 36.000 2.30 0.00 0.00 4.17
4534 7650 9.708222 GATTCAAAGCTTACATGTTATAGTGTG 57.292 33.333 2.30 0.00 0.00 3.82
4535 7651 9.448438 TGATTCAAAGCTTACATGTTATAGTGT 57.552 29.630 2.30 0.00 0.00 3.55
4542 7658 9.903682 GCATATATGATTCAAAGCTTACATGTT 57.096 29.630 17.10 0.00 0.00 2.71
4543 7659 9.070179 TGCATATATGATTCAAAGCTTACATGT 57.930 29.630 17.10 2.69 0.00 3.21
4546 7662 9.287373 TCATGCATATATGATTCAAAGCTTACA 57.713 29.630 17.10 0.53 32.39 2.41
4549 7665 8.803235 ACATCATGCATATATGATTCAAAGCTT 58.197 29.630 21.83 0.00 43.41 3.74
4550 7666 8.349568 ACATCATGCATATATGATTCAAAGCT 57.650 30.769 21.83 0.00 43.41 3.74
4551 7667 9.717892 CTACATCATGCATATATGATTCAAAGC 57.282 33.333 21.83 0.00 43.41 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.