Multiple sequence alignment - TraesCS3B01G461300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G461300 chr3B 100.000 4016 0 0 604 4619 704409318 704405303 0.000000e+00 7417.0
1 TraesCS3B01G461300 chr3B 98.586 1485 17 3 1470 2953 599095515 599094034 0.000000e+00 2623.0
2 TraesCS3B01G461300 chr3B 90.287 906 56 17 1654 2559 761496225 761497098 0.000000e+00 1157.0
3 TraesCS3B01G461300 chr3B 89.018 947 72 16 3602 4526 704466089 704465153 0.000000e+00 1144.0
4 TraesCS3B01G461300 chr3B 95.434 657 27 2 2954 3610 704478710 704478057 0.000000e+00 1044.0
5 TraesCS3B01G461300 chr3B 100.000 415 0 0 1 415 704409921 704409507 0.000000e+00 767.0
6 TraesCS3B01G461300 chr3B 95.652 368 14 2 1002 1369 704479317 704478952 1.430000e-164 590.0
7 TraesCS3B01G461300 chr3B 93.571 280 17 1 1 280 172015334 172015056 2.570000e-112 416.0
8 TraesCS3B01G461300 chr3B 98.765 81 1 0 1369 1449 599095579 599095499 1.340000e-30 145.0
9 TraesCS3B01G461300 chr3B 96.104 77 3 0 935 1011 704559987 704559911 4.850000e-25 126.0
10 TraesCS3B01G461300 chr3B 98.361 61 1 0 4559 4619 704465153 704465093 1.760000e-19 108.0
11 TraesCS3B01G461300 chr3B 88.889 81 3 4 1490 1568 761496133 761496209 1.370000e-15 95.3
12 TraesCS3B01G461300 chr1B 99.057 1484 13 1 1470 2953 16770131 16771613 0.000000e+00 2662.0
13 TraesCS3B01G461300 chr1B 89.344 1098 66 26 1470 2559 400164891 400163837 0.000000e+00 1332.0
14 TraesCS3B01G461300 chr1B 93.955 397 22 2 2557 2952 400161952 400161557 2.380000e-167 599.0
15 TraesCS3B01G461300 chr1B 93.214 280 17 2 1 280 674086614 674086891 1.200000e-110 411.0
16 TraesCS3B01G461300 chr1B 98.750 80 1 0 1370 1449 16770068 16770147 4.820000e-30 143.0
17 TraesCS3B01G461300 chr1B 85.938 64 3 5 1544 1601 100627454 100627391 3.860000e-06 63.9
18 TraesCS3B01G461300 chr2A 99.056 1483 13 1 1470 2952 726216924 726218405 0.000000e+00 2660.0
19 TraesCS3B01G461300 chr2A 87.088 759 60 12 2953 3682 768266528 768265779 0.000000e+00 824.0
20 TraesCS3B01G461300 chr2A 86.502 526 59 9 2955 3471 768257453 768257975 6.710000e-158 568.0
21 TraesCS3B01G461300 chr2A 87.253 455 36 14 920 1369 768267206 768266769 2.480000e-137 499.0
22 TraesCS3B01G461300 chr2A 92.806 139 10 0 277 415 324638638 324638500 7.840000e-48 202.0
23 TraesCS3B01G461300 chr2A 83.871 155 25 0 1198 1352 768306703 768306549 1.040000e-31 148.0
24 TraesCS3B01G461300 chr2A 98.750 80 1 0 1370 1449 726216861 726216940 4.820000e-30 143.0
25 TraesCS3B01G461300 chr2A 88.732 71 7 1 3884 3954 759235338 759235407 8.230000e-13 86.1
26 TraesCS3B01G461300 chr7B 98.855 1485 14 2 1470 2952 677957547 677956064 0.000000e+00 2645.0
27 TraesCS3B01G461300 chr7B 98.750 80 1 0 1370 1449 677957610 677957531 4.820000e-30 143.0
28 TraesCS3B01G461300 chr3A 98.790 1487 13 3 1470 2952 715372540 715374025 0.000000e+00 2641.0
29 TraesCS3B01G461300 chr3A 96.181 576 19 3 2953 3525 667494740 667494165 0.000000e+00 939.0
30 TraesCS3B01G461300 chr3A 96.277 376 13 1 994 1369 667495355 667494981 2.360000e-172 616.0
31 TraesCS3B01G461300 chr3A 83.777 413 36 18 4110 4499 667493506 667493102 3.400000e-96 363.0
32 TraesCS3B01G461300 chr3A 86.290 248 15 5 3565 3806 667494169 667493935 7.670000e-63 252.0
33 TraesCS3B01G461300 chr3A 93.525 139 9 0 277 415 667495805 667495667 1.680000e-49 207.0
34 TraesCS3B01G461300 chr3A 98.750 80 1 0 1370 1449 715372477 715372556 4.820000e-30 143.0
35 TraesCS3B01G461300 chr3A 90.323 93 3 2 868 958 667495441 667495353 2.920000e-22 117.0
36 TraesCS3B01G461300 chr3A 77.273 198 25 10 606 786 667495629 667495435 1.060000e-16 99.0
37 TraesCS3B01G461300 chr3A 96.296 54 2 0 4566 4619 667493099 667493046 6.370000e-14 89.8
38 TraesCS3B01G461300 chr3A 97.368 38 1 0 4236 4273 667493406 667493369 1.070000e-06 65.8
39 TraesCS3B01G461300 chr5A 97.505 1483 18 3 1470 2952 512824752 512823289 0.000000e+00 2516.0
40 TraesCS3B01G461300 chr5A 98.750 80 1 0 1370 1449 512824815 512824736 4.820000e-30 143.0
41 TraesCS3B01G461300 chr5D 90.504 853 58 15 1721 2559 487178453 487179296 0.000000e+00 1105.0
42 TraesCS3B01G461300 chr5D 93.571 280 17 1 1 280 370027440 370027718 2.570000e-112 416.0
43 TraesCS3B01G461300 chr5D 87.500 152 13 4 267 414 11312003 11311854 2.210000e-38 171.0
44 TraesCS3B01G461300 chr3D 93.254 756 31 7 633 1369 532206273 532205519 0.000000e+00 1096.0
45 TraesCS3B01G461300 chr3D 97.064 579 16 1 2948 3525 532205301 532204723 0.000000e+00 974.0
46 TraesCS3B01G461300 chr3D 85.219 778 57 26 3881 4619 532198712 532197954 0.000000e+00 747.0
47 TraesCS3B01G461300 chr3D 86.589 343 20 9 3565 3896 532204727 532204400 5.680000e-94 355.0
48 TraesCS3B01G461300 chr3D 85.016 307 14 9 3418 3724 532199223 532198949 2.720000e-72 283.0
49 TraesCS3B01G461300 chr3D 94.964 139 7 0 277 415 532234762 532234624 7.780000e-53 219.0
50 TraesCS3B01G461300 chr4A 85.242 1118 65 37 1470 2559 536782195 536783240 0.000000e+00 1059.0
51 TraesCS3B01G461300 chr4A 95.477 398 17 1 2557 2953 536785128 536785525 6.520000e-178 634.0
52 TraesCS3B01G461300 chr4A 93.214 280 18 1 1 280 650709258 650708980 1.200000e-110 411.0
53 TraesCS3B01G461300 chr6D 89.405 840 58 11 1744 2559 216860078 216860910 0.000000e+00 1029.0
54 TraesCS3B01G461300 chr6D 93.434 396 26 0 2557 2952 216862797 216863192 5.150000e-164 588.0
55 TraesCS3B01G461300 chr2D 85.844 770 60 20 2953 3700 643435659 643436401 0.000000e+00 773.0
56 TraesCS3B01G461300 chr2D 84.914 464 39 16 914 1369 643434978 643435418 1.530000e-119 440.0
57 TraesCS3B01G461300 chr2D 94.286 280 15 1 1 280 577445853 577445575 1.190000e-115 427.0
58 TraesCS3B01G461300 chr2D 93.214 280 18 1 1 280 471508871 471508593 1.200000e-110 411.0
59 TraesCS3B01G461300 chr2D 93.214 280 18 1 1 280 534480809 534481087 1.200000e-110 411.0
60 TraesCS3B01G461300 chr2D 84.028 144 23 0 1198 1341 643468533 643468390 6.230000e-29 139.0
61 TraesCS3B01G461300 chr2D 95.062 81 4 0 1369 1449 564305402 564305482 1.350000e-25 128.0
62 TraesCS3B01G461300 chr2B 91.652 563 38 4 2953 3507 793505706 793505145 0.000000e+00 771.0
63 TraesCS3B01G461300 chr2B 86.355 535 58 9 2955 3480 793517703 793517175 1.860000e-158 569.0
64 TraesCS3B01G461300 chr2B 88.211 475 34 11 910 1369 793506414 793505947 8.740000e-152 547.0
65 TraesCS3B01G461300 chr2B 95.000 280 13 1 1 280 329461092 329461370 5.490000e-119 438.0
66 TraesCS3B01G461300 chr2B 80.925 519 89 7 2956 3472 793456862 793457372 7.200000e-108 401.0
67 TraesCS3B01G461300 chr2B 84.028 144 23 0 1198 1341 793446972 793446829 6.230000e-29 139.0
68 TraesCS3B01G461300 chr2B 98.701 77 0 1 1370 1446 531148680 531148755 8.060000e-28 135.0
69 TraesCS3B01G461300 chr7D 93.571 280 17 1 1 280 234152910 234152632 2.570000e-112 416.0
70 TraesCS3B01G461300 chr7D 89.583 144 14 1 273 415 121758071 121758214 1.020000e-41 182.0
71 TraesCS3B01G461300 chr7D 89.209 139 14 1 277 415 205727484 205727347 6.140000e-39 172.0
72 TraesCS3B01G461300 chr4B 85.127 316 19 11 1531 1832 101854758 101855059 9.720000e-77 298.0
73 TraesCS3B01G461300 chr4D 94.245 139 8 0 277 415 478034642 478034504 3.620000e-51 213.0
74 TraesCS3B01G461300 chr4D 92.806 139 9 1 277 415 478234818 478234955 2.820000e-47 200.0
75 TraesCS3B01G461300 chr7A 93.333 135 8 1 281 415 679742377 679742510 1.010000e-46 198.0
76 TraesCS3B01G461300 chr6B 96.296 81 3 0 1369 1449 62175090 62175010 2.900000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G461300 chr3B 704405303 704409921 4618 True 4092.000000 7417 100.000000 1 4619 2 chr3B.!!$R4 4618
1 TraesCS3B01G461300 chr3B 599094034 599095579 1545 True 1384.000000 2623 98.675500 1369 2953 2 chr3B.!!$R3 1584
2 TraesCS3B01G461300 chr3B 704478057 704479317 1260 True 817.000000 1044 95.543000 1002 3610 2 chr3B.!!$R6 2608
3 TraesCS3B01G461300 chr3B 761496133 761497098 965 False 626.150000 1157 89.588000 1490 2559 2 chr3B.!!$F1 1069
4 TraesCS3B01G461300 chr3B 704465093 704466089 996 True 626.000000 1144 93.689500 3602 4619 2 chr3B.!!$R5 1017
5 TraesCS3B01G461300 chr1B 16770068 16771613 1545 False 1402.500000 2662 98.903500 1370 2953 2 chr1B.!!$F2 1583
6 TraesCS3B01G461300 chr1B 400161557 400164891 3334 True 965.500000 1332 91.649500 1470 2952 2 chr1B.!!$R2 1482
7 TraesCS3B01G461300 chr2A 726216861 726218405 1544 False 1401.500000 2660 98.903000 1370 2952 2 chr2A.!!$F3 1582
8 TraesCS3B01G461300 chr2A 768265779 768267206 1427 True 661.500000 824 87.170500 920 3682 2 chr2A.!!$R3 2762
9 TraesCS3B01G461300 chr2A 768257453 768257975 522 False 568.000000 568 86.502000 2955 3471 1 chr2A.!!$F2 516
10 TraesCS3B01G461300 chr7B 677956064 677957610 1546 True 1394.000000 2645 98.802500 1370 2952 2 chr7B.!!$R1 1582
11 TraesCS3B01G461300 chr3A 715372477 715374025 1548 False 1392.000000 2641 98.770000 1370 2952 2 chr3A.!!$F1 1582
12 TraesCS3B01G461300 chr3A 667493046 667495805 2759 True 305.400000 939 90.812222 277 4619 9 chr3A.!!$R1 4342
13 TraesCS3B01G461300 chr5A 512823289 512824815 1526 True 1329.500000 2516 98.127500 1370 2952 2 chr5A.!!$R1 1582
14 TraesCS3B01G461300 chr5D 487178453 487179296 843 False 1105.000000 1105 90.504000 1721 2559 1 chr5D.!!$F2 838
15 TraesCS3B01G461300 chr3D 532204400 532206273 1873 True 808.333333 1096 92.302333 633 3896 3 chr3D.!!$R3 3263
16 TraesCS3B01G461300 chr3D 532197954 532199223 1269 True 515.000000 747 85.117500 3418 4619 2 chr3D.!!$R2 1201
17 TraesCS3B01G461300 chr4A 536782195 536785525 3330 False 846.500000 1059 90.359500 1470 2953 2 chr4A.!!$F1 1483
18 TraesCS3B01G461300 chr6D 216860078 216863192 3114 False 808.500000 1029 91.419500 1744 2952 2 chr6D.!!$F1 1208
19 TraesCS3B01G461300 chr2D 643434978 643436401 1423 False 606.500000 773 85.379000 914 3700 2 chr2D.!!$F3 2786
20 TraesCS3B01G461300 chr2B 793505145 793506414 1269 True 659.000000 771 89.931500 910 3507 2 chr2B.!!$R3 2597
21 TraesCS3B01G461300 chr2B 793517175 793517703 528 True 569.000000 569 86.355000 2955 3480 1 chr2B.!!$R2 525
22 TraesCS3B01G461300 chr2B 793456862 793457372 510 False 401.000000 401 80.925000 2956 3472 1 chr2B.!!$F3 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.031585 TGTGTCGTCTTTGTCCTCGG 59.968 55.0 0.00 0.00 0.00 4.63 F
42 43 0.031721 GTGTCGTCTTTGTCCTCGGT 59.968 55.0 0.00 0.00 0.00 4.69 F
74 75 0.032267 TGCGTCGTGTTATGTGGACA 59.968 50.0 0.00 0.00 0.00 4.02 F
104 105 0.033781 CCATGTTGTGGGCTTTGTGG 59.966 55.0 0.00 0.00 44.79 4.17 F
196 197 0.033781 TTGTTCTTGCAGCAATGGGC 59.966 50.0 8.67 0.48 45.30 5.36 F
266 267 0.101579 GCCTTCGCTCTGTCTACTCC 59.898 60.0 0.00 0.00 0.00 3.85 F
268 269 0.248296 CTTCGCTCTGTCTACTCCGC 60.248 60.0 0.00 0.00 0.00 5.54 F
1449 1498 1.052694 GCCCCTCCCAGGTATACGTT 61.053 60.0 0.00 0.00 31.93 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1510 0.104882 TACCTGGGAGGGTGTGTTCA 60.105 55.000 0.00 0.00 40.58 3.18 R
1466 1515 0.337428 ACGTATACCTGGGAGGGTGT 59.663 55.000 0.00 0.00 40.58 4.16 R
1468 1517 1.477558 CGTACGTATACCTGGGAGGGT 60.478 57.143 7.22 0.00 40.58 4.34 R
1918 2036 5.105797 TGTTCGATTGATTGAGAAATTGGGG 60.106 40.000 0.00 0.00 0.00 4.96 R
2539 2679 8.631480 ATCCGGTATTTAGTGTTTTCTTCTTT 57.369 30.769 0.00 0.00 0.00 2.52 R
2585 4617 4.592942 ACTTCTTTCAGCTGATGCCATAA 58.407 39.130 19.04 6.67 40.80 1.90 R
2691 4723 8.071368 TCAATTTCATCAAGCAAATTTTTCTGC 58.929 29.630 0.00 0.00 38.91 4.26 R
3638 5766 0.023858 GCAACGACGATCGAAAGCTC 59.976 55.000 24.34 7.40 43.74 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.681978 GCCCCGAGCTTGTGTCGT 62.682 66.667 0.00 0.00 38.99 4.34
30 31 2.432628 CCCCGAGCTTGTGTCGTC 60.433 66.667 0.00 0.00 35.59 4.20
31 32 2.651361 CCCGAGCTTGTGTCGTCT 59.349 61.111 0.00 0.00 35.59 4.18
32 33 1.006102 CCCGAGCTTGTGTCGTCTT 60.006 57.895 0.00 0.00 35.59 3.01
33 34 0.600255 CCCGAGCTTGTGTCGTCTTT 60.600 55.000 0.00 0.00 35.59 2.52
34 35 0.508641 CCGAGCTTGTGTCGTCTTTG 59.491 55.000 0.00 0.00 35.59 2.77
35 36 1.209128 CGAGCTTGTGTCGTCTTTGT 58.791 50.000 0.00 0.00 32.62 2.83
36 37 1.190323 CGAGCTTGTGTCGTCTTTGTC 59.810 52.381 0.00 0.00 32.62 3.18
37 38 1.527311 GAGCTTGTGTCGTCTTTGTCC 59.473 52.381 0.00 0.00 0.00 4.02
38 39 1.139058 AGCTTGTGTCGTCTTTGTCCT 59.861 47.619 0.00 0.00 0.00 3.85
39 40 1.527311 GCTTGTGTCGTCTTTGTCCTC 59.473 52.381 0.00 0.00 0.00 3.71
40 41 1.787155 CTTGTGTCGTCTTTGTCCTCG 59.213 52.381 0.00 0.00 0.00 4.63
41 42 0.031585 TGTGTCGTCTTTGTCCTCGG 59.968 55.000 0.00 0.00 0.00 4.63
42 43 0.031721 GTGTCGTCTTTGTCCTCGGT 59.968 55.000 0.00 0.00 0.00 4.69
43 44 0.313043 TGTCGTCTTTGTCCTCGGTC 59.687 55.000 0.00 0.00 0.00 4.79
44 45 0.388263 GTCGTCTTTGTCCTCGGTCC 60.388 60.000 0.00 0.00 0.00 4.46
45 46 0.824595 TCGTCTTTGTCCTCGGTCCA 60.825 55.000 0.00 0.00 0.00 4.02
46 47 0.388649 CGTCTTTGTCCTCGGTCCAG 60.389 60.000 0.00 0.00 0.00 3.86
47 48 0.966920 GTCTTTGTCCTCGGTCCAGA 59.033 55.000 0.00 0.00 0.00 3.86
48 49 1.067495 GTCTTTGTCCTCGGTCCAGAG 60.067 57.143 4.33 4.33 37.97 3.35
56 57 2.086054 CTCGGTCCAGAGGTTCTTTG 57.914 55.000 3.57 0.00 34.74 2.77
57 58 0.034896 TCGGTCCAGAGGTTCTTTGC 59.965 55.000 0.00 0.00 0.00 3.68
58 59 1.291877 CGGTCCAGAGGTTCTTTGCG 61.292 60.000 0.00 0.00 0.00 4.85
59 60 0.250338 GGTCCAGAGGTTCTTTGCGT 60.250 55.000 0.00 0.00 0.00 5.24
60 61 1.149148 GTCCAGAGGTTCTTTGCGTC 58.851 55.000 0.00 0.00 0.00 5.19
61 62 0.319555 TCCAGAGGTTCTTTGCGTCG 60.320 55.000 0.00 0.00 0.00 5.12
62 63 0.600255 CCAGAGGTTCTTTGCGTCGT 60.600 55.000 0.00 0.00 0.00 4.34
63 64 0.508641 CAGAGGTTCTTTGCGTCGTG 59.491 55.000 0.00 0.00 0.00 4.35
64 65 0.104304 AGAGGTTCTTTGCGTCGTGT 59.896 50.000 0.00 0.00 0.00 4.49
65 66 0.935196 GAGGTTCTTTGCGTCGTGTT 59.065 50.000 0.00 0.00 0.00 3.32
66 67 2.129607 GAGGTTCTTTGCGTCGTGTTA 58.870 47.619 0.00 0.00 0.00 2.41
67 68 2.735134 GAGGTTCTTTGCGTCGTGTTAT 59.265 45.455 0.00 0.00 0.00 1.89
68 69 2.478894 AGGTTCTTTGCGTCGTGTTATG 59.521 45.455 0.00 0.00 0.00 1.90
69 70 2.222445 GGTTCTTTGCGTCGTGTTATGT 59.778 45.455 0.00 0.00 0.00 2.29
70 71 3.215244 GTTCTTTGCGTCGTGTTATGTG 58.785 45.455 0.00 0.00 0.00 3.21
71 72 1.795872 TCTTTGCGTCGTGTTATGTGG 59.204 47.619 0.00 0.00 0.00 4.17
72 73 1.795872 CTTTGCGTCGTGTTATGTGGA 59.204 47.619 0.00 0.00 0.00 4.02
73 74 1.141645 TTGCGTCGTGTTATGTGGAC 58.858 50.000 0.00 0.00 0.00 4.02
74 75 0.032267 TGCGTCGTGTTATGTGGACA 59.968 50.000 0.00 0.00 0.00 4.02
75 76 1.141645 GCGTCGTGTTATGTGGACAA 58.858 50.000 0.00 0.00 0.00 3.18
76 77 1.126113 GCGTCGTGTTATGTGGACAAG 59.874 52.381 0.00 0.00 0.00 3.16
77 78 2.400399 CGTCGTGTTATGTGGACAAGT 58.600 47.619 0.00 0.00 0.00 3.16
78 79 2.154963 CGTCGTGTTATGTGGACAAGTG 59.845 50.000 0.00 0.00 0.00 3.16
79 80 2.096417 GTCGTGTTATGTGGACAAGTGC 60.096 50.000 0.00 0.00 0.00 4.40
80 81 1.136363 CGTGTTATGTGGACAAGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
81 82 1.196808 GTGTTATGTGGACAAGTGCGG 59.803 52.381 0.00 0.00 0.00 5.69
82 83 0.168128 GTTATGTGGACAAGTGCGGC 59.832 55.000 0.00 0.00 0.00 6.53
83 84 1.295357 TTATGTGGACAAGTGCGGCG 61.295 55.000 0.51 0.51 0.00 6.46
103 104 3.591979 CCATGTTGTGGGCTTTGTG 57.408 52.632 0.00 0.00 44.79 3.33
104 105 0.033781 CCATGTTGTGGGCTTTGTGG 59.966 55.000 0.00 0.00 44.79 4.17
105 106 0.600782 CATGTTGTGGGCTTTGTGGC 60.601 55.000 0.00 0.00 40.96 5.01
106 107 1.047596 ATGTTGTGGGCTTTGTGGCA 61.048 50.000 0.00 0.00 43.83 4.92
107 108 1.047596 TGTTGTGGGCTTTGTGGCAT 61.048 50.000 0.00 0.00 43.83 4.40
108 109 0.965439 GTTGTGGGCTTTGTGGCATA 59.035 50.000 0.00 0.00 43.83 3.14
109 110 1.550072 GTTGTGGGCTTTGTGGCATAT 59.450 47.619 0.00 0.00 43.83 1.78
110 111 1.935799 TGTGGGCTTTGTGGCATATT 58.064 45.000 0.00 0.00 43.83 1.28
111 112 1.824230 TGTGGGCTTTGTGGCATATTC 59.176 47.619 0.00 0.00 43.83 1.75
112 113 1.824230 GTGGGCTTTGTGGCATATTCA 59.176 47.619 0.00 0.00 43.83 2.57
113 114 2.431782 GTGGGCTTTGTGGCATATTCAT 59.568 45.455 0.00 0.00 43.83 2.57
114 115 3.636300 GTGGGCTTTGTGGCATATTCATA 59.364 43.478 0.00 0.00 43.83 2.15
115 116 4.099266 GTGGGCTTTGTGGCATATTCATAA 59.901 41.667 0.00 0.00 43.83 1.90
116 117 4.099266 TGGGCTTTGTGGCATATTCATAAC 59.901 41.667 0.00 0.00 43.83 1.89
117 118 4.099266 GGGCTTTGTGGCATATTCATAACA 59.901 41.667 0.00 0.00 43.83 2.41
118 119 5.395103 GGGCTTTGTGGCATATTCATAACAA 60.395 40.000 0.00 0.00 43.83 2.83
119 120 5.750067 GGCTTTGTGGCATATTCATAACAAG 59.250 40.000 0.00 0.00 41.37 3.16
120 121 6.332630 GCTTTGTGGCATATTCATAACAAGT 58.667 36.000 0.00 0.00 0.00 3.16
121 122 6.813152 GCTTTGTGGCATATTCATAACAAGTT 59.187 34.615 0.00 0.00 0.00 2.66
122 123 7.331687 GCTTTGTGGCATATTCATAACAAGTTT 59.668 33.333 0.00 0.00 0.00 2.66
123 124 9.853555 CTTTGTGGCATATTCATAACAAGTTTA 57.146 29.630 0.00 0.00 0.00 2.01
124 125 9.632807 TTTGTGGCATATTCATAACAAGTTTAC 57.367 29.630 0.00 0.00 0.00 2.01
125 126 8.574251 TGTGGCATATTCATAACAAGTTTACT 57.426 30.769 0.00 0.00 0.00 2.24
126 127 9.674068 TGTGGCATATTCATAACAAGTTTACTA 57.326 29.630 0.00 0.00 0.00 1.82
134 135 9.975218 ATTCATAACAAGTTTACTATTGAGGGT 57.025 29.630 0.00 0.00 0.00 4.34
135 136 8.786826 TCATAACAAGTTTACTATTGAGGGTG 57.213 34.615 0.00 0.00 0.00 4.61
136 137 8.380099 TCATAACAAGTTTACTATTGAGGGTGT 58.620 33.333 0.00 0.00 0.00 4.16
137 138 6.877611 AACAAGTTTACTATTGAGGGTGTG 57.122 37.500 0.00 0.00 0.00 3.82
138 139 5.937111 ACAAGTTTACTATTGAGGGTGTGT 58.063 37.500 0.00 0.00 0.00 3.72
139 140 6.362248 ACAAGTTTACTATTGAGGGTGTGTT 58.638 36.000 0.00 0.00 0.00 3.32
140 141 6.485648 ACAAGTTTACTATTGAGGGTGTGTTC 59.514 38.462 0.00 0.00 0.00 3.18
141 142 5.557866 AGTTTACTATTGAGGGTGTGTTCC 58.442 41.667 0.00 0.00 0.00 3.62
149 150 3.950869 GGGTGTGTTCCCCTCTTAC 57.049 57.895 0.00 0.00 41.54 2.34
150 151 0.327259 GGGTGTGTTCCCCTCTTACC 59.673 60.000 0.00 0.00 41.54 2.85
151 152 0.327259 GGTGTGTTCCCCTCTTACCC 59.673 60.000 0.00 0.00 0.00 3.69
152 153 1.359168 GTGTGTTCCCCTCTTACCCT 58.641 55.000 0.00 0.00 0.00 4.34
153 154 1.003233 GTGTGTTCCCCTCTTACCCTG 59.997 57.143 0.00 0.00 0.00 4.45
154 155 0.035343 GTGTTCCCCTCTTACCCTGC 60.035 60.000 0.00 0.00 0.00 4.85
155 156 0.178873 TGTTCCCCTCTTACCCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
156 157 0.253327 GTTCCCCTCTTACCCTGCTG 59.747 60.000 0.00 0.00 0.00 4.41
157 158 0.118346 TTCCCCTCTTACCCTGCTGA 59.882 55.000 0.00 0.00 0.00 4.26
158 159 0.617820 TCCCCTCTTACCCTGCTGAC 60.618 60.000 0.00 0.00 0.00 3.51
159 160 1.517832 CCCTCTTACCCTGCTGACG 59.482 63.158 0.00 0.00 0.00 4.35
160 161 1.258445 CCCTCTTACCCTGCTGACGT 61.258 60.000 0.00 0.00 0.00 4.34
161 162 1.471119 CCTCTTACCCTGCTGACGTA 58.529 55.000 0.00 0.00 0.00 3.57
162 163 1.822990 CCTCTTACCCTGCTGACGTAA 59.177 52.381 0.00 0.00 0.00 3.18
163 164 2.431057 CCTCTTACCCTGCTGACGTAAT 59.569 50.000 0.00 0.00 0.00 1.89
164 165 3.491104 CCTCTTACCCTGCTGACGTAATC 60.491 52.174 0.00 0.00 0.00 1.75
165 166 3.362706 TCTTACCCTGCTGACGTAATCT 58.637 45.455 0.00 0.00 0.00 2.40
166 167 4.529897 TCTTACCCTGCTGACGTAATCTA 58.470 43.478 0.00 0.00 0.00 1.98
167 168 4.337555 TCTTACCCTGCTGACGTAATCTAC 59.662 45.833 0.00 0.00 0.00 2.59
168 169 2.453521 ACCCTGCTGACGTAATCTACA 58.546 47.619 0.00 0.00 0.00 2.74
169 170 2.829720 ACCCTGCTGACGTAATCTACAA 59.170 45.455 0.00 0.00 0.00 2.41
170 171 3.259876 ACCCTGCTGACGTAATCTACAAA 59.740 43.478 0.00 0.00 0.00 2.83
171 172 4.081087 ACCCTGCTGACGTAATCTACAAAT 60.081 41.667 0.00 0.00 0.00 2.32
172 173 4.271049 CCCTGCTGACGTAATCTACAAATG 59.729 45.833 0.00 0.00 0.00 2.32
173 174 4.260375 CCTGCTGACGTAATCTACAAATGC 60.260 45.833 0.00 0.00 0.00 3.56
174 175 4.249661 TGCTGACGTAATCTACAAATGCA 58.750 39.130 0.00 0.00 0.00 3.96
175 176 4.875536 TGCTGACGTAATCTACAAATGCAT 59.124 37.500 0.00 0.00 0.00 3.96
176 177 5.006649 TGCTGACGTAATCTACAAATGCATC 59.993 40.000 0.00 0.00 0.00 3.91
177 178 5.235186 GCTGACGTAATCTACAAATGCATCT 59.765 40.000 0.00 0.00 0.00 2.90
178 179 6.238211 GCTGACGTAATCTACAAATGCATCTT 60.238 38.462 0.00 0.00 0.00 2.40
179 180 7.003939 TGACGTAATCTACAAATGCATCTTG 57.996 36.000 15.58 15.58 0.00 3.02
180 181 6.593770 TGACGTAATCTACAAATGCATCTTGT 59.406 34.615 22.19 22.19 40.13 3.16
181 182 7.119116 TGACGTAATCTACAAATGCATCTTGTT 59.881 33.333 23.11 13.23 38.05 2.83
182 183 7.464358 ACGTAATCTACAAATGCATCTTGTTC 58.536 34.615 23.11 11.82 38.05 3.18
183 184 7.334421 ACGTAATCTACAAATGCATCTTGTTCT 59.666 33.333 23.11 12.96 38.05 3.01
184 185 8.177663 CGTAATCTACAAATGCATCTTGTTCTT 58.822 33.333 23.11 17.67 38.05 2.52
185 186 9.282247 GTAATCTACAAATGCATCTTGTTCTTG 57.718 33.333 23.11 14.88 38.05 3.02
186 187 5.702865 TCTACAAATGCATCTTGTTCTTGC 58.297 37.500 23.11 0.00 38.05 4.01
190 191 1.320507 TGCATCTTGTTCTTGCAGCA 58.679 45.000 0.00 0.00 41.18 4.41
191 192 1.682323 TGCATCTTGTTCTTGCAGCAA 59.318 42.857 7.81 7.81 41.18 3.91
192 193 2.297880 TGCATCTTGTTCTTGCAGCAAT 59.702 40.909 8.67 0.00 41.18 3.56
193 194 2.666508 GCATCTTGTTCTTGCAGCAATG 59.333 45.455 8.67 2.40 36.40 2.82
194 195 3.250744 CATCTTGTTCTTGCAGCAATGG 58.749 45.455 8.67 0.00 0.00 3.16
195 196 1.614903 TCTTGTTCTTGCAGCAATGGG 59.385 47.619 8.67 0.00 0.00 4.00
196 197 0.033781 TTGTTCTTGCAGCAATGGGC 59.966 50.000 8.67 0.48 45.30 5.36
197 198 1.079612 GTTCTTGCAGCAATGGGCC 60.080 57.895 8.67 0.00 46.50 5.80
198 199 2.285024 TTCTTGCAGCAATGGGCCC 61.285 57.895 17.59 17.59 46.50 5.80
199 200 3.777910 CTTGCAGCAATGGGCCCC 61.778 66.667 22.27 2.76 46.50 5.80
217 218 4.039092 GCTGGGAAGGCAGCAGGA 62.039 66.667 0.00 0.00 43.40 3.86
218 219 2.045536 CTGGGAAGGCAGCAGGAC 60.046 66.667 0.00 0.00 0.00 3.85
219 220 2.530151 TGGGAAGGCAGCAGGACT 60.530 61.111 0.00 0.00 34.99 3.85
220 221 2.270527 GGGAAGGCAGCAGGACTC 59.729 66.667 0.00 0.00 28.41 3.36
221 222 2.297129 GGGAAGGCAGCAGGACTCT 61.297 63.158 0.00 0.00 28.41 3.24
222 223 1.078567 GGAAGGCAGCAGGACTCTG 60.079 63.158 0.00 0.00 43.64 3.35
223 224 1.548357 GGAAGGCAGCAGGACTCTGA 61.548 60.000 0.00 0.00 43.49 3.27
224 225 0.540923 GAAGGCAGCAGGACTCTGAT 59.459 55.000 0.00 0.00 43.49 2.90
225 226 0.540923 AAGGCAGCAGGACTCTGATC 59.459 55.000 0.00 0.00 43.49 2.92
226 227 0.325484 AGGCAGCAGGACTCTGATCT 60.325 55.000 0.00 0.00 43.49 2.75
227 228 0.179078 GGCAGCAGGACTCTGATCTG 60.179 60.000 0.00 0.00 43.49 2.90
233 234 3.823281 CAGGACTCTGATCTGCATCTT 57.177 47.619 0.00 0.00 43.49 2.40
234 235 3.719924 CAGGACTCTGATCTGCATCTTC 58.280 50.000 0.00 0.00 43.49 2.87
235 236 3.385433 CAGGACTCTGATCTGCATCTTCT 59.615 47.826 0.00 0.00 43.49 2.85
236 237 3.385433 AGGACTCTGATCTGCATCTTCTG 59.615 47.826 0.00 0.00 0.00 3.02
237 238 3.493002 GGACTCTGATCTGCATCTTCTGG 60.493 52.174 0.00 0.00 0.00 3.86
238 239 2.158928 ACTCTGATCTGCATCTTCTGGC 60.159 50.000 0.00 0.00 0.00 4.85
239 240 2.103432 CTCTGATCTGCATCTTCTGGCT 59.897 50.000 0.00 0.00 0.00 4.75
240 241 2.102757 TCTGATCTGCATCTTCTGGCTC 59.897 50.000 0.00 0.00 0.00 4.70
241 242 2.103432 CTGATCTGCATCTTCTGGCTCT 59.897 50.000 0.00 0.00 0.00 4.09
242 243 2.504585 TGATCTGCATCTTCTGGCTCTT 59.495 45.455 0.00 0.00 0.00 2.85
243 244 2.398252 TCTGCATCTTCTGGCTCTTG 57.602 50.000 0.00 0.00 0.00 3.02
244 245 0.733729 CTGCATCTTCTGGCTCTTGC 59.266 55.000 0.00 0.00 38.76 4.01
245 246 0.327259 TGCATCTTCTGGCTCTTGCT 59.673 50.000 0.00 0.00 39.59 3.91
246 247 1.015868 GCATCTTCTGGCTCTTGCTC 58.984 55.000 0.00 0.00 39.59 4.26
247 248 1.288350 CATCTTCTGGCTCTTGCTCG 58.712 55.000 0.00 0.00 39.59 5.03
248 249 0.461693 ATCTTCTGGCTCTTGCTCGC 60.462 55.000 0.00 0.00 39.59 5.03
249 250 2.046892 TTCTGGCTCTTGCTCGCC 60.047 61.111 0.00 0.00 46.46 5.54
250 251 2.518973 CTTCTGGCTCTTGCTCGCCT 62.519 60.000 0.00 0.00 46.42 5.52
251 252 2.046507 CTGGCTCTTGCTCGCCTT 60.047 61.111 0.00 0.00 46.42 4.35
252 253 2.046892 TGGCTCTTGCTCGCCTTC 60.047 61.111 0.00 0.00 46.42 3.46
253 254 3.191539 GGCTCTTGCTCGCCTTCG 61.192 66.667 0.00 0.00 42.98 3.79
254 255 3.858989 GCTCTTGCTCGCCTTCGC 61.859 66.667 0.00 0.00 36.03 4.70
255 256 2.125753 CTCTTGCTCGCCTTCGCT 60.126 61.111 0.00 0.00 35.26 4.93
256 257 2.125912 TCTTGCTCGCCTTCGCTC 60.126 61.111 0.00 0.00 35.26 5.03
257 258 2.125753 CTTGCTCGCCTTCGCTCT 60.126 61.111 0.00 0.00 35.26 4.09
258 259 2.433145 TTGCTCGCCTTCGCTCTG 60.433 61.111 0.00 0.00 35.26 3.35
259 260 3.226429 TTGCTCGCCTTCGCTCTGT 62.226 57.895 0.00 0.00 35.26 3.41
260 261 2.883253 GCTCGCCTTCGCTCTGTC 60.883 66.667 0.00 0.00 35.26 3.51
261 262 2.881389 CTCGCCTTCGCTCTGTCT 59.119 61.111 0.00 0.00 35.26 3.41
262 263 1.994507 GCTCGCCTTCGCTCTGTCTA 61.995 60.000 0.00 0.00 35.26 2.59
263 264 0.248296 CTCGCCTTCGCTCTGTCTAC 60.248 60.000 0.00 0.00 35.26 2.59
264 265 0.677098 TCGCCTTCGCTCTGTCTACT 60.677 55.000 0.00 0.00 35.26 2.57
265 266 0.248296 CGCCTTCGCTCTGTCTACTC 60.248 60.000 0.00 0.00 0.00 2.59
266 267 0.101579 GCCTTCGCTCTGTCTACTCC 59.898 60.000 0.00 0.00 0.00 3.85
267 268 0.378962 CCTTCGCTCTGTCTACTCCG 59.621 60.000 0.00 0.00 0.00 4.63
268 269 0.248296 CTTCGCTCTGTCTACTCCGC 60.248 60.000 0.00 0.00 0.00 5.54
269 270 1.978712 TTCGCTCTGTCTACTCCGCG 61.979 60.000 0.00 0.00 41.69 6.46
270 271 2.751913 CGCTCTGTCTACTCCGCGT 61.752 63.158 4.92 0.00 36.28 6.01
271 272 1.062845 GCTCTGTCTACTCCGCGTC 59.937 63.158 4.92 0.00 0.00 5.19
272 273 1.348938 CTCTGTCTACTCCGCGTCG 59.651 63.158 4.92 0.00 0.00 5.12
273 274 2.277373 CTGTCTACTCCGCGTCGC 60.277 66.667 7.29 7.29 0.00 5.19
304 305 2.044946 AATGGAAGGCTGACCGGC 60.045 61.111 0.00 0.00 42.76 6.13
326 327 1.469767 GCAACCTTCGCATTGATTCCC 60.470 52.381 0.00 0.00 0.00 3.97
328 329 1.356624 CCTTCGCATTGATTCCCGC 59.643 57.895 0.00 0.00 0.00 6.13
347 348 3.460648 GGGAAACCGAGGTGATGAG 57.539 57.895 0.00 0.00 43.64 2.90
381 382 4.221422 GGCATCGCCCAGTCGCTA 62.221 66.667 0.00 0.00 44.06 4.26
386 387 1.320344 ATCGCCCAGTCGCTAACTCA 61.320 55.000 0.00 0.00 35.45 3.41
399 400 1.122632 TAACTCAGCGGGTCCACCAA 61.123 55.000 0.00 0.00 40.22 3.67
630 631 3.747976 ACCGGCGCCAATTTCAGC 61.748 61.111 28.98 0.00 0.00 4.26
651 652 2.167662 CCTAAGCGGTGAAAATTGGGT 58.832 47.619 0.00 0.00 0.00 4.51
656 657 3.492337 AGCGGTGAAAATTGGGTTTCTA 58.508 40.909 0.00 0.00 38.17 2.10
664 665 2.799126 ATTGGGTTTCTATGGACGCA 57.201 45.000 0.00 0.00 37.00 5.24
735 756 3.172106 TTGGGGCCACTTGACCGA 61.172 61.111 6.53 0.00 0.00 4.69
853 875 2.348666 CCTACACAATGCTAACTCACGC 59.651 50.000 0.00 0.00 0.00 5.34
912 937 4.883083 AGATTTACAGCTCACAGACGAAA 58.117 39.130 0.00 0.00 0.00 3.46
1446 1495 3.902408 GGCCCCTCCCAGGTATAC 58.098 66.667 0.00 0.00 31.93 1.47
1447 1496 2.214920 GGCCCCTCCCAGGTATACG 61.215 68.421 0.00 0.00 31.93 3.06
1449 1498 1.052694 GCCCCTCCCAGGTATACGTT 61.053 60.000 0.00 0.00 31.93 3.99
1450 1499 1.503800 CCCCTCCCAGGTATACGTTT 58.496 55.000 0.00 0.00 31.93 3.60
1452 1501 2.240414 CCCCTCCCAGGTATACGTTTTT 59.760 50.000 0.00 0.00 31.93 1.94
1599 1686 1.519751 GGCCCATGTTTGCACGTACA 61.520 55.000 0.00 0.00 0.00 2.90
1889 2007 2.102084 CTCTTCCCTCGCATGATCTTGA 59.898 50.000 12.54 0.00 0.00 3.02
2170 2295 8.596781 AGTACAGGTAGAAAGTATTCATCTGT 57.403 34.615 0.00 0.00 41.12 3.41
2539 2679 2.377531 GTGGAAAGGGGGTCTAAAAGGA 59.622 50.000 0.00 0.00 0.00 3.36
2585 4617 7.228706 CCGGATTTTCTTTACTATGCCTGTTAT 59.771 37.037 0.00 0.00 0.00 1.89
2919 4952 0.106149 GCCCCGGATCATAGTTTCGT 59.894 55.000 0.73 0.00 0.00 3.85
3151 5218 4.473520 CCGGACCGGCTGCAGAAT 62.474 66.667 22.37 0.00 41.17 2.40
3400 5467 0.694771 TCAGCTGCTTCAGGACCAAT 59.305 50.000 9.47 0.00 31.21 3.16
3406 5473 0.899717 GCTTCAGGACCAATGCCCAA 60.900 55.000 0.00 0.00 0.00 4.12
3571 5680 2.961669 GCCGTAGCCAACCGTGTTG 61.962 63.158 9.11 9.11 0.00 3.33
3572 5681 1.301087 CCGTAGCCAACCGTGTTGA 60.301 57.895 15.59 0.00 0.00 3.18
3633 5761 4.800993 CGTGTAGCAATAAAGAGACAGAGG 59.199 45.833 0.00 0.00 0.00 3.69
3634 5762 4.568760 GTGTAGCAATAAAGAGACAGAGGC 59.431 45.833 0.00 0.00 0.00 4.70
3635 5763 3.988976 AGCAATAAAGAGACAGAGGCA 57.011 42.857 0.00 0.00 0.00 4.75
3636 5764 3.604582 AGCAATAAAGAGACAGAGGCAC 58.395 45.455 0.00 0.00 0.00 5.01
3637 5765 3.008375 AGCAATAAAGAGACAGAGGCACA 59.992 43.478 0.00 0.00 0.00 4.57
3638 5766 3.373439 GCAATAAAGAGACAGAGGCACAG 59.627 47.826 0.00 0.00 0.00 3.66
3639 5767 4.825422 CAATAAAGAGACAGAGGCACAGA 58.175 43.478 0.00 0.00 0.00 3.41
3640 5768 4.734398 ATAAAGAGACAGAGGCACAGAG 57.266 45.455 0.00 0.00 0.00 3.35
3709 5845 2.373540 GGACACCTATGTGCGTGTAA 57.626 50.000 0.00 0.00 46.86 2.41
3754 5909 3.089784 GCGTGTGCGATGGTAAGG 58.910 61.111 0.00 0.00 41.33 2.69
3755 5910 3.089784 CGTGTGCGATGGTAAGGC 58.910 61.111 0.00 0.00 41.33 4.35
3797 5955 2.448582 AAAGGTGGTGGGTCGAGCA 61.449 57.895 17.59 0.00 0.00 4.26
3864 6214 0.039798 CGAACGTTCGTCAAGGGAGA 60.040 55.000 35.92 0.00 45.09 3.71
3908 6258 3.244561 TGGCAGTTTTAGTTGAGAGGGAG 60.245 47.826 0.00 0.00 0.00 4.30
3909 6259 3.008049 GGCAGTTTTAGTTGAGAGGGAGA 59.992 47.826 0.00 0.00 0.00 3.71
3932 6282 1.433534 GAGAGGTGGCAGTTTCTTCG 58.566 55.000 0.00 0.00 0.00 3.79
3942 6292 0.320374 AGTTTCTTCGGGCGACATGA 59.680 50.000 0.00 0.00 0.00 3.07
3943 6293 0.442699 GTTTCTTCGGGCGACATGAC 59.557 55.000 0.00 0.00 0.00 3.06
3970 6321 1.399791 CTCTGAGAAGGCAATTTCCGC 59.600 52.381 0.00 0.00 0.00 5.54
3980 6331 4.956085 AGGCAATTTCCGCTTAAAAACTT 58.044 34.783 0.00 0.00 0.00 2.66
3989 6341 4.083696 TCCGCTTAAAAACTTTCATCGTCC 60.084 41.667 0.00 0.00 0.00 4.79
3998 6350 6.884280 AAACTTTCATCGTCCTTTGATCTT 57.116 33.333 0.00 0.00 0.00 2.40
4042 6396 2.816777 TATATGGTTGCTTGCCACCA 57.183 45.000 18.65 18.65 39.03 4.17
4043 6397 2.163810 ATATGGTTGCTTGCCACCAT 57.836 45.000 26.87 26.87 44.31 3.55
4048 6402 0.811281 GTTGCTTGCCACCATCTACC 59.189 55.000 0.00 0.00 0.00 3.18
4059 6418 0.179145 CCATCTACCGCGAACTTCGT 60.179 55.000 8.23 0.00 42.81 3.85
4067 6426 1.467035 CCGCGAACTTCGTTAGCTACT 60.467 52.381 8.23 0.00 40.87 2.57
4105 6464 7.713073 AGAGACTGAGTTTCTTTCTACCAAAAG 59.287 37.037 0.00 0.00 37.55 2.27
4116 6475 6.268847 TCTTTCTACCAAAAGAAGAGAGAGCT 59.731 38.462 0.00 0.00 41.17 4.09
4159 6522 3.525537 TCGAGTTTCATCCTTGCATCTC 58.474 45.455 0.00 0.00 0.00 2.75
4160 6523 2.283617 CGAGTTTCATCCTTGCATCTCG 59.716 50.000 0.00 0.00 37.72 4.04
4161 6524 3.265791 GAGTTTCATCCTTGCATCTCGT 58.734 45.455 0.00 0.00 0.00 4.18
4320 6762 0.895530 TAAGCTGGACAGGGACTTCG 59.104 55.000 1.01 0.00 34.60 3.79
4338 6780 0.946221 CGCGATCCTGGATGTAAGGC 60.946 60.000 15.25 8.32 34.56 4.35
4360 6803 7.995289 AGGCGTGTTTGAATATGAATAAATGA 58.005 30.769 0.00 0.00 0.00 2.57
4362 6805 7.097047 GGCGTGTTTGAATATGAATAAATGACG 60.097 37.037 0.00 0.00 0.00 4.35
4363 6806 7.563296 GCGTGTTTGAATATGAATAAATGACGC 60.563 37.037 0.00 0.00 38.40 5.19
4364 6807 7.097047 CGTGTTTGAATATGAATAAATGACGCC 60.097 37.037 0.00 0.00 0.00 5.68
4365 6808 7.915397 GTGTTTGAATATGAATAAATGACGCCT 59.085 33.333 0.00 0.00 0.00 5.52
4366 6809 8.465999 TGTTTGAATATGAATAAATGACGCCTT 58.534 29.630 0.00 0.00 0.00 4.35
4367 6810 8.958043 GTTTGAATATGAATAAATGACGCCTTC 58.042 33.333 0.00 0.00 0.00 3.46
4368 6811 7.800155 TGAATATGAATAAATGACGCCTTCA 57.200 32.000 0.00 0.00 39.11 3.02
4379 6822 1.192146 ACGCCTTCAGCCTTCAGGTA 61.192 55.000 0.00 0.00 38.78 3.08
4522 6969 2.161078 TACGTGGCACTCCGAATGCA 62.161 55.000 16.72 0.00 45.27 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.681978 ACGACACAAGCTCGGGGC 62.682 66.667 0.00 0.00 42.19 5.80
13 14 2.432628 GACGACACAAGCTCGGGG 60.433 66.667 0.00 0.00 35.37 5.73
14 15 0.600255 AAAGACGACACAAGCTCGGG 60.600 55.000 0.00 0.00 35.37 5.14
15 16 0.508641 CAAAGACGACACAAGCTCGG 59.491 55.000 0.00 0.00 35.37 4.63
16 17 1.190323 GACAAAGACGACACAAGCTCG 59.810 52.381 0.00 0.00 37.17 5.03
17 18 1.527311 GGACAAAGACGACACAAGCTC 59.473 52.381 0.00 0.00 0.00 4.09
18 19 1.139058 AGGACAAAGACGACACAAGCT 59.861 47.619 0.00 0.00 0.00 3.74
19 20 1.527311 GAGGACAAAGACGACACAAGC 59.473 52.381 0.00 0.00 0.00 4.01
20 21 1.787155 CGAGGACAAAGACGACACAAG 59.213 52.381 0.00 0.00 0.00 3.16
21 22 1.537348 CCGAGGACAAAGACGACACAA 60.537 52.381 0.00 0.00 0.00 3.33
22 23 0.031585 CCGAGGACAAAGACGACACA 59.968 55.000 0.00 0.00 0.00 3.72
23 24 0.031721 ACCGAGGACAAAGACGACAC 59.968 55.000 0.00 0.00 0.00 3.67
24 25 0.313043 GACCGAGGACAAAGACGACA 59.687 55.000 0.00 0.00 0.00 4.35
25 26 0.388263 GGACCGAGGACAAAGACGAC 60.388 60.000 0.00 0.00 0.00 4.34
26 27 0.824595 TGGACCGAGGACAAAGACGA 60.825 55.000 0.00 0.00 0.00 4.20
27 28 0.388649 CTGGACCGAGGACAAAGACG 60.389 60.000 0.00 0.00 0.00 4.18
28 29 0.966920 TCTGGACCGAGGACAAAGAC 59.033 55.000 0.00 0.00 0.00 3.01
29 30 1.257743 CTCTGGACCGAGGACAAAGA 58.742 55.000 0.00 0.00 0.00 2.52
30 31 3.822607 CTCTGGACCGAGGACAAAG 57.177 57.895 0.00 0.00 0.00 2.77
37 38 1.941668 GCAAAGAACCTCTGGACCGAG 60.942 57.143 6.42 6.42 0.00 4.63
38 39 0.034896 GCAAAGAACCTCTGGACCGA 59.965 55.000 0.00 0.00 0.00 4.69
39 40 1.291877 CGCAAAGAACCTCTGGACCG 61.292 60.000 0.00 0.00 0.00 4.79
40 41 0.250338 ACGCAAAGAACCTCTGGACC 60.250 55.000 0.00 0.00 0.00 4.46
41 42 1.149148 GACGCAAAGAACCTCTGGAC 58.851 55.000 0.00 0.00 0.00 4.02
42 43 0.319555 CGACGCAAAGAACCTCTGGA 60.320 55.000 0.00 0.00 0.00 3.86
43 44 0.600255 ACGACGCAAAGAACCTCTGG 60.600 55.000 0.00 0.00 0.00 3.86
44 45 0.508641 CACGACGCAAAGAACCTCTG 59.491 55.000 0.00 0.00 0.00 3.35
45 46 0.104304 ACACGACGCAAAGAACCTCT 59.896 50.000 0.00 0.00 0.00 3.69
46 47 0.935196 AACACGACGCAAAGAACCTC 59.065 50.000 0.00 0.00 0.00 3.85
47 48 2.228138 TAACACGACGCAAAGAACCT 57.772 45.000 0.00 0.00 0.00 3.50
48 49 2.222445 ACATAACACGACGCAAAGAACC 59.778 45.455 0.00 0.00 0.00 3.62
49 50 3.215244 CACATAACACGACGCAAAGAAC 58.785 45.455 0.00 0.00 0.00 3.01
50 51 2.222213 CCACATAACACGACGCAAAGAA 59.778 45.455 0.00 0.00 0.00 2.52
51 52 1.795872 CCACATAACACGACGCAAAGA 59.204 47.619 0.00 0.00 0.00 2.52
52 53 1.795872 TCCACATAACACGACGCAAAG 59.204 47.619 0.00 0.00 0.00 2.77
53 54 1.527736 GTCCACATAACACGACGCAAA 59.472 47.619 0.00 0.00 0.00 3.68
54 55 1.141645 GTCCACATAACACGACGCAA 58.858 50.000 0.00 0.00 0.00 4.85
55 56 0.032267 TGTCCACATAACACGACGCA 59.968 50.000 0.00 0.00 0.00 5.24
56 57 1.126113 CTTGTCCACATAACACGACGC 59.874 52.381 0.00 0.00 0.00 5.19
57 58 2.154963 CACTTGTCCACATAACACGACG 59.845 50.000 0.00 0.00 0.00 5.12
58 59 2.096417 GCACTTGTCCACATAACACGAC 60.096 50.000 0.00 0.00 0.00 4.34
59 60 2.139917 GCACTTGTCCACATAACACGA 58.860 47.619 0.00 0.00 0.00 4.35
60 61 1.136363 CGCACTTGTCCACATAACACG 60.136 52.381 0.00 0.00 0.00 4.49
61 62 1.196808 CCGCACTTGTCCACATAACAC 59.803 52.381 0.00 0.00 0.00 3.32
62 63 1.518325 CCGCACTTGTCCACATAACA 58.482 50.000 0.00 0.00 0.00 2.41
63 64 0.168128 GCCGCACTTGTCCACATAAC 59.832 55.000 0.00 0.00 0.00 1.89
64 65 1.295357 CGCCGCACTTGTCCACATAA 61.295 55.000 0.00 0.00 0.00 1.90
65 66 1.739929 CGCCGCACTTGTCCACATA 60.740 57.895 0.00 0.00 0.00 2.29
66 67 3.049674 CGCCGCACTTGTCCACAT 61.050 61.111 0.00 0.00 0.00 3.21
86 87 0.600782 GCCACAAAGCCCACAACATG 60.601 55.000 0.00 0.00 0.00 3.21
87 88 1.047596 TGCCACAAAGCCCACAACAT 61.048 50.000 0.00 0.00 0.00 2.71
88 89 1.047596 ATGCCACAAAGCCCACAACA 61.048 50.000 0.00 0.00 0.00 3.33
89 90 0.965439 TATGCCACAAAGCCCACAAC 59.035 50.000 0.00 0.00 0.00 3.32
90 91 1.935799 ATATGCCACAAAGCCCACAA 58.064 45.000 0.00 0.00 0.00 3.33
91 92 1.824230 GAATATGCCACAAAGCCCACA 59.176 47.619 0.00 0.00 0.00 4.17
92 93 1.824230 TGAATATGCCACAAAGCCCAC 59.176 47.619 0.00 0.00 0.00 4.61
93 94 2.228545 TGAATATGCCACAAAGCCCA 57.771 45.000 0.00 0.00 0.00 5.36
94 95 4.099266 TGTTATGAATATGCCACAAAGCCC 59.901 41.667 0.00 0.00 0.00 5.19
95 96 5.261209 TGTTATGAATATGCCACAAAGCC 57.739 39.130 0.00 0.00 0.00 4.35
96 97 6.332630 ACTTGTTATGAATATGCCACAAAGC 58.667 36.000 0.00 0.00 0.00 3.51
97 98 8.761575 AAACTTGTTATGAATATGCCACAAAG 57.238 30.769 0.00 0.00 0.00 2.77
98 99 9.632807 GTAAACTTGTTATGAATATGCCACAAA 57.367 29.630 0.00 0.00 0.00 2.83
99 100 9.019656 AGTAAACTTGTTATGAATATGCCACAA 57.980 29.630 0.00 0.00 0.00 3.33
100 101 8.574251 AGTAAACTTGTTATGAATATGCCACA 57.426 30.769 0.00 0.00 0.00 4.17
108 109 9.975218 ACCCTCAATAGTAAACTTGTTATGAAT 57.025 29.630 0.00 0.00 0.00 2.57
109 110 9.226606 CACCCTCAATAGTAAACTTGTTATGAA 57.773 33.333 0.00 0.00 0.00 2.57
110 111 8.380099 ACACCCTCAATAGTAAACTTGTTATGA 58.620 33.333 0.00 0.00 0.00 2.15
111 112 8.450964 CACACCCTCAATAGTAAACTTGTTATG 58.549 37.037 0.00 0.00 0.00 1.90
112 113 8.161425 ACACACCCTCAATAGTAAACTTGTTAT 58.839 33.333 0.00 0.00 0.00 1.89
113 114 7.511268 ACACACCCTCAATAGTAAACTTGTTA 58.489 34.615 0.00 0.00 0.00 2.41
114 115 6.362248 ACACACCCTCAATAGTAAACTTGTT 58.638 36.000 0.00 0.00 0.00 2.83
115 116 5.937111 ACACACCCTCAATAGTAAACTTGT 58.063 37.500 0.00 0.00 0.00 3.16
116 117 6.072673 GGAACACACCCTCAATAGTAAACTTG 60.073 42.308 0.00 0.00 0.00 3.16
117 118 6.002082 GGAACACACCCTCAATAGTAAACTT 58.998 40.000 0.00 0.00 0.00 2.66
118 119 5.514310 GGGAACACACCCTCAATAGTAAACT 60.514 44.000 0.00 0.00 45.90 2.66
119 120 4.698780 GGGAACACACCCTCAATAGTAAAC 59.301 45.833 0.00 0.00 45.90 2.01
120 121 4.913784 GGGAACACACCCTCAATAGTAAA 58.086 43.478 0.00 0.00 45.90 2.01
121 122 4.563140 GGGAACACACCCTCAATAGTAA 57.437 45.455 0.00 0.00 45.90 2.24
132 133 0.327259 GGGTAAGAGGGGAACACACC 59.673 60.000 0.00 0.00 0.00 4.16
133 134 1.003233 CAGGGTAAGAGGGGAACACAC 59.997 57.143 0.00 0.00 0.00 3.82
134 135 1.358152 CAGGGTAAGAGGGGAACACA 58.642 55.000 0.00 0.00 0.00 3.72
135 136 0.035343 GCAGGGTAAGAGGGGAACAC 60.035 60.000 0.00 0.00 0.00 3.32
136 137 0.178873 AGCAGGGTAAGAGGGGAACA 60.179 55.000 0.00 0.00 0.00 3.18
137 138 0.253327 CAGCAGGGTAAGAGGGGAAC 59.747 60.000 0.00 0.00 0.00 3.62
138 139 0.118346 TCAGCAGGGTAAGAGGGGAA 59.882 55.000 0.00 0.00 0.00 3.97
139 140 0.617820 GTCAGCAGGGTAAGAGGGGA 60.618 60.000 0.00 0.00 0.00 4.81
140 141 1.908483 GTCAGCAGGGTAAGAGGGG 59.092 63.158 0.00 0.00 0.00 4.79
141 142 1.258445 ACGTCAGCAGGGTAAGAGGG 61.258 60.000 0.00 0.00 0.00 4.30
142 143 1.471119 TACGTCAGCAGGGTAAGAGG 58.529 55.000 0.00 0.00 0.00 3.69
143 144 3.381908 AGATTACGTCAGCAGGGTAAGAG 59.618 47.826 0.00 0.00 30.49 2.85
144 145 3.362706 AGATTACGTCAGCAGGGTAAGA 58.637 45.455 0.00 0.00 30.49 2.10
145 146 3.802948 AGATTACGTCAGCAGGGTAAG 57.197 47.619 0.00 0.00 30.49 2.34
146 147 4.018490 TGTAGATTACGTCAGCAGGGTAA 58.982 43.478 0.00 0.00 0.00 2.85
147 148 3.623703 TGTAGATTACGTCAGCAGGGTA 58.376 45.455 0.00 0.00 0.00 3.69
148 149 2.453521 TGTAGATTACGTCAGCAGGGT 58.546 47.619 0.00 0.00 0.00 4.34
149 150 3.520290 TTGTAGATTACGTCAGCAGGG 57.480 47.619 0.00 0.00 0.00 4.45
150 151 4.260375 GCATTTGTAGATTACGTCAGCAGG 60.260 45.833 0.00 0.00 0.00 4.85
151 152 4.329801 TGCATTTGTAGATTACGTCAGCAG 59.670 41.667 0.00 0.00 0.00 4.24
152 153 4.249661 TGCATTTGTAGATTACGTCAGCA 58.750 39.130 0.00 0.00 0.00 4.41
153 154 4.857871 TGCATTTGTAGATTACGTCAGC 57.142 40.909 0.00 0.00 0.00 4.26
154 155 6.834959 AGATGCATTTGTAGATTACGTCAG 57.165 37.500 0.00 0.00 0.00 3.51
155 156 6.593770 ACAAGATGCATTTGTAGATTACGTCA 59.406 34.615 19.19 0.00 37.02 4.35
156 157 7.005062 ACAAGATGCATTTGTAGATTACGTC 57.995 36.000 19.19 0.00 37.02 4.34
157 158 6.985188 ACAAGATGCATTTGTAGATTACGT 57.015 33.333 19.19 0.00 37.02 3.57
158 159 7.688372 AGAACAAGATGCATTTGTAGATTACG 58.312 34.615 20.25 0.00 37.77 3.18
159 160 9.282247 CAAGAACAAGATGCATTTGTAGATTAC 57.718 33.333 20.25 11.70 37.77 1.89
160 161 7.970061 GCAAGAACAAGATGCATTTGTAGATTA 59.030 33.333 20.25 0.00 37.77 1.75
161 162 6.810182 GCAAGAACAAGATGCATTTGTAGATT 59.190 34.615 20.25 14.61 37.77 2.40
162 163 6.071784 TGCAAGAACAAGATGCATTTGTAGAT 60.072 34.615 20.25 10.44 44.52 1.98
163 164 5.241285 TGCAAGAACAAGATGCATTTGTAGA 59.759 36.000 20.25 5.89 44.52 2.59
164 165 5.463286 TGCAAGAACAAGATGCATTTGTAG 58.537 37.500 20.25 14.19 44.52 2.74
165 166 5.450592 TGCAAGAACAAGATGCATTTGTA 57.549 34.783 20.25 8.94 44.52 2.41
166 167 4.325028 TGCAAGAACAAGATGCATTTGT 57.675 36.364 16.54 16.54 44.52 2.83
171 172 1.320507 TGCTGCAAGAACAAGATGCA 58.679 45.000 0.00 0.00 46.97 3.96
172 173 2.427232 TTGCTGCAAGAACAAGATGC 57.573 45.000 11.69 0.00 40.45 3.91
173 174 3.250744 CCATTGCTGCAAGAACAAGATG 58.749 45.455 20.72 10.77 34.07 2.90
174 175 2.232941 CCCATTGCTGCAAGAACAAGAT 59.767 45.455 20.72 0.00 34.07 2.40
175 176 1.614903 CCCATTGCTGCAAGAACAAGA 59.385 47.619 20.72 0.00 34.07 3.02
176 177 1.938016 GCCCATTGCTGCAAGAACAAG 60.938 52.381 20.72 7.15 34.07 3.16
177 178 0.033781 GCCCATTGCTGCAAGAACAA 59.966 50.000 20.72 0.00 34.07 2.83
178 179 1.667151 GCCCATTGCTGCAAGAACA 59.333 52.632 20.72 0.00 34.07 3.18
179 180 1.079612 GGCCCATTGCTGCAAGAAC 60.080 57.895 20.72 9.63 40.92 3.01
180 181 2.285024 GGGCCCATTGCTGCAAGAA 61.285 57.895 19.95 0.00 40.92 2.52
181 182 2.681064 GGGCCCATTGCTGCAAGA 60.681 61.111 19.95 0.00 40.92 3.02
182 183 3.777910 GGGGCCCATTGCTGCAAG 61.778 66.667 26.86 12.07 40.92 4.01
201 202 2.045536 GTCCTGCTGCCTTCCCAG 60.046 66.667 0.00 0.00 35.93 4.45
202 203 2.530151 AGTCCTGCTGCCTTCCCA 60.530 61.111 0.00 0.00 0.00 4.37
203 204 2.270527 GAGTCCTGCTGCCTTCCC 59.729 66.667 0.00 0.00 0.00 3.97
204 205 1.078567 CAGAGTCCTGCTGCCTTCC 60.079 63.158 0.00 0.00 33.07 3.46
205 206 0.540923 ATCAGAGTCCTGCTGCCTTC 59.459 55.000 0.00 0.00 40.20 3.46
206 207 0.540923 GATCAGAGTCCTGCTGCCTT 59.459 55.000 0.00 0.00 40.20 4.35
207 208 0.325484 AGATCAGAGTCCTGCTGCCT 60.325 55.000 0.00 0.00 40.20 4.75
208 209 0.179078 CAGATCAGAGTCCTGCTGCC 60.179 60.000 0.00 0.00 40.20 4.85
209 210 0.810823 GCAGATCAGAGTCCTGCTGC 60.811 60.000 10.75 9.59 46.96 5.25
210 211 3.365976 GCAGATCAGAGTCCTGCTG 57.634 57.895 10.75 4.28 46.96 4.41
213 214 3.385433 AGAAGATGCAGATCAGAGTCCTG 59.615 47.826 0.00 0.00 41.74 3.86
214 215 3.385433 CAGAAGATGCAGATCAGAGTCCT 59.615 47.826 0.00 0.00 0.00 3.85
215 216 3.493002 CCAGAAGATGCAGATCAGAGTCC 60.493 52.174 0.00 0.00 0.00 3.85
216 217 3.719924 CCAGAAGATGCAGATCAGAGTC 58.280 50.000 0.00 0.00 0.00 3.36
217 218 2.158928 GCCAGAAGATGCAGATCAGAGT 60.159 50.000 0.00 0.00 0.00 3.24
218 219 2.103432 AGCCAGAAGATGCAGATCAGAG 59.897 50.000 0.00 0.00 0.00 3.35
219 220 2.102757 GAGCCAGAAGATGCAGATCAGA 59.897 50.000 0.00 0.00 0.00 3.27
220 221 2.103432 AGAGCCAGAAGATGCAGATCAG 59.897 50.000 0.00 0.00 0.00 2.90
221 222 2.117051 AGAGCCAGAAGATGCAGATCA 58.883 47.619 0.00 0.00 0.00 2.92
222 223 2.873472 CAAGAGCCAGAAGATGCAGATC 59.127 50.000 0.00 0.00 0.00 2.75
223 224 2.920524 CAAGAGCCAGAAGATGCAGAT 58.079 47.619 0.00 0.00 0.00 2.90
224 225 1.678123 GCAAGAGCCAGAAGATGCAGA 60.678 52.381 0.00 0.00 34.10 4.26
225 226 0.733729 GCAAGAGCCAGAAGATGCAG 59.266 55.000 0.00 0.00 34.10 4.41
226 227 0.327259 AGCAAGAGCCAGAAGATGCA 59.673 50.000 0.00 0.00 43.56 3.96
227 228 1.015868 GAGCAAGAGCCAGAAGATGC 58.984 55.000 0.00 0.00 43.56 3.91
228 229 1.288350 CGAGCAAGAGCCAGAAGATG 58.712 55.000 0.00 0.00 43.56 2.90
229 230 0.461693 GCGAGCAAGAGCCAGAAGAT 60.462 55.000 0.00 0.00 43.56 2.40
230 231 1.079543 GCGAGCAAGAGCCAGAAGA 60.080 57.895 0.00 0.00 43.56 2.87
231 232 3.483959 GCGAGCAAGAGCCAGAAG 58.516 61.111 0.00 0.00 43.56 2.85
237 238 3.858989 GCGAAGGCGAGCAAGAGC 61.859 66.667 0.00 0.00 40.82 4.09
238 239 2.125753 AGCGAAGGCGAGCAAGAG 60.126 61.111 0.00 0.00 46.35 2.85
239 240 2.125912 GAGCGAAGGCGAGCAAGA 60.126 61.111 0.00 0.00 46.35 3.02
240 241 2.125753 AGAGCGAAGGCGAGCAAG 60.126 61.111 0.00 0.00 46.35 4.01
241 242 2.433145 CAGAGCGAAGGCGAGCAA 60.433 61.111 0.00 0.00 46.35 3.91
242 243 3.633094 GACAGAGCGAAGGCGAGCA 62.633 63.158 0.00 0.00 46.35 4.26
243 244 1.994507 TAGACAGAGCGAAGGCGAGC 61.995 60.000 0.00 0.00 46.35 5.03
244 245 0.248296 GTAGACAGAGCGAAGGCGAG 60.248 60.000 0.00 0.00 46.35 5.03
245 246 0.677098 AGTAGACAGAGCGAAGGCGA 60.677 55.000 0.00 0.00 46.35 5.54
246 247 0.248296 GAGTAGACAGAGCGAAGGCG 60.248 60.000 0.00 0.00 46.35 5.52
247 248 0.101579 GGAGTAGACAGAGCGAAGGC 59.898 60.000 0.00 0.00 40.37 4.35
248 249 0.378962 CGGAGTAGACAGAGCGAAGG 59.621 60.000 0.00 0.00 0.00 3.46
249 250 0.248296 GCGGAGTAGACAGAGCGAAG 60.248 60.000 0.00 0.00 0.00 3.79
250 251 1.801332 GCGGAGTAGACAGAGCGAA 59.199 57.895 0.00 0.00 0.00 4.70
251 252 3.499050 GCGGAGTAGACAGAGCGA 58.501 61.111 0.00 0.00 0.00 4.93
252 253 2.023461 CGCGGAGTAGACAGAGCG 59.977 66.667 0.00 0.00 41.56 5.03
253 254 1.062845 GACGCGGAGTAGACAGAGC 59.937 63.158 12.47 0.00 0.00 4.09
254 255 1.348938 CGACGCGGAGTAGACAGAG 59.651 63.158 12.47 0.00 0.00 3.35
255 256 2.747822 GCGACGCGGAGTAGACAGA 61.748 63.158 12.47 0.00 0.00 3.41
256 257 2.277373 GCGACGCGGAGTAGACAG 60.277 66.667 12.47 0.00 0.00 3.51
269 270 3.255379 GATTCACGGGCTCGCGAC 61.255 66.667 5.51 1.87 40.63 5.19
270 271 2.572095 ATTGATTCACGGGCTCGCGA 62.572 55.000 5.51 9.26 40.63 5.87
271 272 2.173669 ATTGATTCACGGGCTCGCG 61.174 57.895 5.51 0.00 40.63 5.87
272 273 1.353103 CATTGATTCACGGGCTCGC 59.647 57.895 5.51 0.00 40.63 5.03
273 274 0.461870 TCCATTGATTCACGGGCTCG 60.462 55.000 3.27 3.27 43.02 5.03
274 275 1.672881 CTTCCATTGATTCACGGGCTC 59.327 52.381 2.29 0.00 0.00 4.70
275 276 1.683011 CCTTCCATTGATTCACGGGCT 60.683 52.381 2.29 0.00 0.00 5.19
304 305 0.171007 AATCAATGCGAAGGTTGCCG 59.829 50.000 0.00 0.00 0.00 5.69
309 310 1.376609 GCGGGAATCAATGCGAAGGT 61.377 55.000 0.00 0.00 0.00 3.50
341 342 3.017442 AGAATCTTCGTCGTCCTCATCA 58.983 45.455 0.00 0.00 0.00 3.07
347 348 0.866483 GCCGAGAATCTTCGTCGTCC 60.866 60.000 0.00 0.00 38.88 4.79
381 382 2.397413 CTTGGTGGACCCGCTGAGTT 62.397 60.000 0.00 0.00 35.15 3.01
386 387 3.133365 AAAGCTTGGTGGACCCGCT 62.133 57.895 0.00 4.38 41.53 5.52
607 608 4.778143 ATTGGCGCCGGTGGACTC 62.778 66.667 23.90 0.00 0.00 3.36
608 609 3.860930 AAATTGGCGCCGGTGGACT 62.861 57.895 23.90 0.00 0.00 3.85
609 610 3.336715 GAAATTGGCGCCGGTGGAC 62.337 63.158 23.90 5.19 0.00 4.02
610 611 3.059386 GAAATTGGCGCCGGTGGA 61.059 61.111 23.90 0.00 0.00 4.02
611 612 3.340953 CTGAAATTGGCGCCGGTGG 62.341 63.158 23.90 3.39 0.00 4.61
612 613 2.179018 CTGAAATTGGCGCCGGTG 59.821 61.111 23.90 11.67 0.00 4.94
613 614 3.747976 GCTGAAATTGGCGCCGGT 61.748 61.111 23.90 10.16 0.00 5.28
614 615 4.496927 GGCTGAAATTGGCGCCGG 62.497 66.667 23.90 0.00 32.22 6.13
621 622 1.133025 CACCGCTTAGGGCTGAAATTG 59.867 52.381 0.00 0.00 46.96 2.32
630 631 1.476488 CCCAATTTTCACCGCTTAGGG 59.524 52.381 0.00 0.00 46.96 3.53
640 641 4.082463 GCGTCCATAGAAACCCAATTTTCA 60.082 41.667 0.00 0.00 37.86 2.69
651 652 2.301870 AGTCCAGTTGCGTCCATAGAAA 59.698 45.455 0.00 0.00 0.00 2.52
656 657 0.615331 ATCAGTCCAGTTGCGTCCAT 59.385 50.000 0.00 0.00 0.00 3.41
737 758 1.224069 CTTGTGTGTGAGCCGAGTGG 61.224 60.000 0.00 0.00 38.77 4.00
853 875 7.971722 TGTATCTGCATGTTCATTTCATTTCTG 59.028 33.333 0.00 0.00 0.00 3.02
902 927 3.243771 ACCAACTACTCCTTTCGTCTGTG 60.244 47.826 0.00 0.00 0.00 3.66
912 937 1.204941 GATCACGCACCAACTACTCCT 59.795 52.381 0.00 0.00 0.00 3.69
1038 1072 0.695347 AGCTAGCTTGACTGGGCTTT 59.305 50.000 12.68 0.00 39.65 3.51
1457 1506 2.383855 CTGGGAGGGTGTGTTCAAAAA 58.616 47.619 0.00 0.00 0.00 1.94
1458 1507 1.410932 CCTGGGAGGGTGTGTTCAAAA 60.411 52.381 0.00 0.00 0.00 2.44
1459 1508 0.184933 CCTGGGAGGGTGTGTTCAAA 59.815 55.000 0.00 0.00 0.00 2.69
1460 1509 0.991355 ACCTGGGAGGGTGTGTTCAA 60.991 55.000 0.00 0.00 40.58 2.69
1461 1510 0.104882 TACCTGGGAGGGTGTGTTCA 60.105 55.000 0.00 0.00 40.58 3.18
1462 1511 1.286248 ATACCTGGGAGGGTGTGTTC 58.714 55.000 0.00 0.00 40.58 3.18
1463 1512 2.193993 GTATACCTGGGAGGGTGTGTT 58.806 52.381 0.00 0.00 40.58 3.32
1464 1513 1.875488 GTATACCTGGGAGGGTGTGT 58.125 55.000 0.00 0.00 40.58 3.72
1465 1514 0.750850 CGTATACCTGGGAGGGTGTG 59.249 60.000 0.00 0.00 40.58 3.82
1466 1515 0.337428 ACGTATACCTGGGAGGGTGT 59.663 55.000 0.00 0.00 40.58 4.16
1467 1516 1.959282 GTACGTATACCTGGGAGGGTG 59.041 57.143 0.00 0.00 40.58 4.61
1468 1517 1.477558 CGTACGTATACCTGGGAGGGT 60.478 57.143 7.22 0.00 40.58 4.34
1918 2036 5.105797 TGTTCGATTGATTGAGAAATTGGGG 60.106 40.000 0.00 0.00 0.00 4.96
2539 2679 8.631480 ATCCGGTATTTAGTGTTTTCTTCTTT 57.369 30.769 0.00 0.00 0.00 2.52
2585 4617 4.592942 ACTTCTTTCAGCTGATGCCATAA 58.407 39.130 19.04 6.67 40.80 1.90
2691 4723 8.071368 TCAATTTCATCAAGCAAATTTTTCTGC 58.929 29.630 0.00 0.00 38.91 4.26
2919 4952 4.068887 GATTTTGGGGGCCCGGGA 62.069 66.667 29.31 0.00 39.42 5.14
3522 5624 1.438710 GCACGCTAACACAACGCAG 60.439 57.895 0.00 0.00 0.00 5.18
3571 5680 6.713792 AAATAGAAGCAAGTCGAGAACTTC 57.286 37.500 8.58 8.58 45.28 3.01
3633 5761 0.642800 GACGATCGAAAGCTCTGTGC 59.357 55.000 24.34 0.00 43.29 4.57
3634 5762 0.910513 CGACGATCGAAAGCTCTGTG 59.089 55.000 24.34 0.00 43.74 3.66
3635 5763 0.522180 ACGACGATCGAAAGCTCTGT 59.478 50.000 24.34 8.02 43.74 3.41
3636 5764 1.318785 CAACGACGATCGAAAGCTCTG 59.681 52.381 24.34 7.42 43.74 3.35
3637 5765 1.618861 CAACGACGATCGAAAGCTCT 58.381 50.000 24.34 0.00 43.74 4.09
3638 5766 0.023858 GCAACGACGATCGAAAGCTC 59.976 55.000 24.34 7.40 43.74 4.09
3639 5767 0.666274 TGCAACGACGATCGAAAGCT 60.666 50.000 24.34 0.00 43.74 3.74
3640 5768 0.370273 ATGCAACGACGATCGAAAGC 59.630 50.000 24.34 17.20 43.74 3.51
3702 5838 6.771188 ATTATCTAGAGCAATGTTACACGC 57.229 37.500 0.00 0.87 0.00 5.34
3750 5905 1.204146 GACCCATCACCTCTGCCTTA 58.796 55.000 0.00 0.00 0.00 2.69
3753 5908 2.187946 CGACCCATCACCTCTGCC 59.812 66.667 0.00 0.00 0.00 4.85
3754 5909 1.142748 CTCGACCCATCACCTCTGC 59.857 63.158 0.00 0.00 0.00 4.26
3755 5910 1.186200 TTCTCGACCCATCACCTCTG 58.814 55.000 0.00 0.00 0.00 3.35
3797 5955 5.374071 ACTACACGAACCCAGAAGAAAAAT 58.626 37.500 0.00 0.00 0.00 1.82
3864 6214 4.314440 ACCGCTCACGTGTGCCAT 62.314 61.111 30.45 19.06 37.70 4.40
3877 6227 1.917782 TAAAACTGCCATGCGACCGC 61.918 55.000 7.53 7.53 42.35 5.68
3908 6258 0.980423 AAACTGCCACCTCTCCTCTC 59.020 55.000 0.00 0.00 0.00 3.20
3909 6259 0.980423 GAAACTGCCACCTCTCCTCT 59.020 55.000 0.00 0.00 0.00 3.69
3932 6282 0.247736 AGAGAAGTGTCATGTCGCCC 59.752 55.000 0.00 0.00 0.00 6.13
3970 6321 9.118236 GATCAAAGGACGATGAAAGTTTTTAAG 57.882 33.333 0.00 0.00 0.00 1.85
3980 6331 6.633500 AAAACAAGATCAAAGGACGATGAA 57.367 33.333 0.00 0.00 0.00 2.57
4059 6418 9.790344 AGTCTCTTTATCGGTAATAGTAGCTAA 57.210 33.333 0.00 0.00 0.00 3.09
4067 6426 9.186837 AGAAACTCAGTCTCTTTATCGGTAATA 57.813 33.333 0.00 0.00 0.00 0.98
4159 6522 6.093404 AGTAGAACACACAACATAGATCACG 58.907 40.000 0.00 0.00 0.00 4.35
4160 6523 7.488471 GGTAGTAGAACACACAACATAGATCAC 59.512 40.741 0.00 0.00 0.00 3.06
4161 6524 7.396339 AGGTAGTAGAACACACAACATAGATCA 59.604 37.037 0.00 0.00 0.00 2.92
4320 6762 0.946221 CGCCTTACATCCAGGATCGC 60.946 60.000 0.00 0.00 32.41 4.58
4338 6780 7.097047 GGCGTCATTTATTCATATTCAAACACG 60.097 37.037 0.00 0.00 0.00 4.49
4360 6803 1.192146 TACCTGAAGGCTGAAGGCGT 61.192 55.000 14.12 0.00 46.23 5.68
4362 6805 0.393132 GGTACCTGAAGGCTGAAGGC 60.393 60.000 14.12 0.00 39.32 4.35
4363 6806 1.280457 AGGTACCTGAAGGCTGAAGG 58.720 55.000 15.42 12.91 39.32 3.46
4364 6807 3.077359 CAAAGGTACCTGAAGGCTGAAG 58.923 50.000 17.14 0.00 39.32 3.02
4365 6808 2.441750 ACAAAGGTACCTGAAGGCTGAA 59.558 45.455 17.14 0.00 39.32 3.02
4366 6809 2.038557 GACAAAGGTACCTGAAGGCTGA 59.961 50.000 17.14 0.00 39.32 4.26
4367 6810 2.039084 AGACAAAGGTACCTGAAGGCTG 59.961 50.000 17.14 8.75 39.32 4.85
4368 6811 2.339769 AGACAAAGGTACCTGAAGGCT 58.660 47.619 17.14 13.07 39.32 4.58
4402 6849 1.815003 GCACCAAACATCTCCCTCAAG 59.185 52.381 0.00 0.00 0.00 3.02
4488 6935 3.060363 GCCACGTAACACTAAACAGATCG 59.940 47.826 0.00 0.00 0.00 3.69
4522 6969 1.881709 CGAGCTGACGATGCATGCT 60.882 57.895 20.33 5.95 36.63 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.