Multiple sequence alignment - TraesCS3B01G461200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G461200 chr3B 100.000 6974 0 0 1 6974 704330080 704323107 0.000000e+00 12879.0
1 TraesCS3B01G461200 chr3B 78.837 808 94 41 4937 5722 704312372 704311620 2.280000e-129 473.0
2 TraesCS3B01G461200 chr3B 83.588 262 41 2 5077 5337 704025857 704025597 1.940000e-60 244.0
3 TraesCS3B01G461200 chr3B 82.213 253 41 4 5087 5337 704109975 704109725 1.520000e-51 215.0
4 TraesCS3B01G461200 chr3B 84.302 172 15 8 2 168 696704409 696704573 2.600000e-34 158.0
5 TraesCS3B01G461200 chr3A 90.919 4625 211 79 1209 5716 667358259 667353727 0.000000e+00 6021.0
6 TraesCS3B01G461200 chr3A 90.312 640 43 13 5818 6448 667353699 667353070 0.000000e+00 821.0
7 TraesCS3B01G461200 chr3A 93.981 515 22 6 654 1163 667358899 667358389 0.000000e+00 771.0
8 TraesCS3B01G461200 chr3A 81.017 806 91 38 4940 5722 667346049 667345283 1.010000e-162 584.0
9 TraesCS3B01G461200 chr3A 97.788 226 4 1 418 643 487442970 487442746 8.480000e-104 388.0
10 TraesCS3B01G461200 chr3A 76.407 551 96 26 4801 5324 667133443 667132900 4.150000e-67 267.0
11 TraesCS3B01G461200 chr3A 86.243 189 25 1 230 418 705254839 705254652 3.300000e-48 204.0
12 TraesCS3B01G461200 chr3A 84.302 172 15 8 2 168 9969622 9969458 2.600000e-34 158.0
13 TraesCS3B01G461200 chr3A 82.883 111 5 4 6878 6974 667351247 667351137 3.470000e-13 87.9
14 TraesCS3B01G461200 chr3D 91.336 3024 143 45 1161 4097 532175084 532172093 0.000000e+00 4023.0
15 TraesCS3B01G461200 chr3D 88.506 1392 93 25 4183 5557 532171703 532170362 0.000000e+00 1622.0
16 TraesCS3B01G461200 chr3D 91.575 724 38 13 5746 6448 532170091 532169370 0.000000e+00 977.0
17 TraesCS3B01G461200 chr3D 94.307 527 13 5 654 1163 532175684 532175158 0.000000e+00 791.0
18 TraesCS3B01G461200 chr3D 78.810 807 93 41 4937 5722 532156503 532155754 8.190000e-129 472.0
19 TraesCS3B01G461200 chr3D 76.693 502 94 17 4837 5324 532105979 532105487 2.500000e-64 257.0
20 TraesCS3B01G461200 chr3D 87.500 216 15 5 6757 6972 532168924 532168721 9.040000e-59 239.0
21 TraesCS3B01G461200 chr3D 89.157 166 17 1 252 417 9100322 9100158 9.170000e-49 206.0
22 TraesCS3B01G461200 chr3D 87.302 126 5 5 4096 4218 532171835 532171718 4.390000e-27 134.0
23 TraesCS3B01G461200 chr2B 92.417 422 28 1 1 418 467796757 467797178 3.600000e-167 599.0
24 TraesCS3B01G461200 chr2B 87.629 194 24 0 224 417 477591868 477592061 7.040000e-55 226.0
25 TraesCS3B01G461200 chr4B 92.105 418 29 1 1 414 429297736 429298153 2.800000e-163 586.0
26 TraesCS3B01G461200 chr2A 99.548 221 1 0 424 644 98119934 98120154 3.030000e-108 403.0
27 TraesCS3B01G461200 chr2A 83.854 192 31 0 230 421 14950390 14950581 4.300000e-42 183.0
28 TraesCS3B01G461200 chrUn 97.425 233 5 1 421 652 311486155 311485923 5.070000e-106 396.0
29 TraesCS3B01G461200 chr7B 98.643 221 3 0 424 644 411546102 411545882 6.560000e-105 392.0
30 TraesCS3B01G461200 chr7B 96.930 228 6 1 416 643 606395119 606394893 1.420000e-101 381.0
31 TraesCS3B01G461200 chr5B 98.206 223 4 0 422 644 26029665 26029887 2.360000e-104 390.0
32 TraesCS3B01G461200 chr7A 96.983 232 6 1 416 646 575269054 575269285 8.480000e-104 388.0
33 TraesCS3B01G461200 chr7A 76.773 409 60 20 33 417 660426845 660427242 5.520000e-46 196.0
34 TraesCS3B01G461200 chr7A 85.443 158 11 8 2 154 51361078 51361228 3.370000e-33 154.0
35 TraesCS3B01G461200 chr5A 96.983 232 6 1 411 642 675426082 675426312 8.480000e-104 388.0
36 TraesCS3B01G461200 chr5A 77.073 410 59 19 32 417 622440339 622440737 3.300000e-48 204.0
37 TraesCS3B01G461200 chr5A 79.283 251 49 3 172 421 665720703 665720455 9.300000e-39 172.0
38 TraesCS3B01G461200 chr1A 95.763 236 8 2 410 645 20415852 20415619 5.110000e-101 379.0
39 TraesCS3B01G461200 chr7D 92.386 197 13 2 221 416 406862852 406863047 5.330000e-71 279.0
40 TraesCS3B01G461200 chr7D 90.244 205 16 2 21 221 406862215 406862419 1.490000e-66 265.0
41 TraesCS3B01G461200 chr1D 89.175 194 20 1 224 417 492364920 492365112 2.510000e-59 241.0
42 TraesCS3B01G461200 chr6A 91.228 114 9 1 1 113 617720660 617720773 3.370000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G461200 chr3B 704323107 704330080 6973 True 12879.000000 12879 100.000000 1 6974 1 chr3B.!!$R4 6973
1 TraesCS3B01G461200 chr3B 704311620 704312372 752 True 473.000000 473 78.837000 4937 5722 1 chr3B.!!$R3 785
2 TraesCS3B01G461200 chr3A 667351137 667358899 7762 True 1925.225000 6021 89.523750 654 6974 4 chr3A.!!$R6 6320
3 TraesCS3B01G461200 chr3A 667345283 667346049 766 True 584.000000 584 81.017000 4940 5722 1 chr3A.!!$R4 782
4 TraesCS3B01G461200 chr3A 667132900 667133443 543 True 267.000000 267 76.407000 4801 5324 1 chr3A.!!$R3 523
5 TraesCS3B01G461200 chr3D 532168721 532175684 6963 True 1297.666667 4023 90.087667 654 6972 6 chr3D.!!$R4 6318
6 TraesCS3B01G461200 chr3D 532155754 532156503 749 True 472.000000 472 78.810000 4937 5722 1 chr3D.!!$R3 785
7 TraesCS3B01G461200 chr7D 406862215 406863047 832 False 272.000000 279 91.315000 21 416 2 chr7D.!!$F1 395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 876 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.0 0.00 0.0 0.00 5.14 F
1638 2228 0.039180 TCTGTCCTCCACCTCGCTTA 59.961 55.0 0.00 0.0 0.00 3.09 F
2256 2870 0.367210 GTAGAAAACTCGAGCGCTGC 59.633 55.0 18.48 5.6 0.00 5.25 F
2617 3231 0.035630 AGATGCAGGACTCAAGGCAC 60.036 55.0 0.00 0.0 39.34 5.01 F
2995 3609 0.107654 GGTTAGCATCCCAGCGTTCT 60.108 55.0 0.00 0.0 40.15 3.01 F
3816 4484 0.392998 TCTTTCTCCTGGAATGGCGC 60.393 55.0 0.00 0.0 33.53 6.53 F
5428 6447 0.179103 GCAGCTTTGCCACAAGTGTT 60.179 50.0 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 2997 0.462581 TGAGAATGCACCGATCAGCC 60.463 55.000 0.0 0.0 0.00 4.85 R
2609 3223 0.036732 AGGATTTCTGCGTGCCTTGA 59.963 50.000 0.0 0.0 0.00 3.02 R
3816 4484 2.099592 TGCACAACTGAGGCAAGAAAAG 59.900 45.455 0.0 0.0 34.05 2.27 R
4209 5181 2.111384 GATTCAGCAGTACTCCCTCCA 58.889 52.381 0.0 0.0 0.00 3.86 R
4552 5530 3.792956 CGGTGCAAAATGATGTAATCTGC 59.207 43.478 0.0 0.0 45.81 4.26 R
5738 6875 0.037326 ACATCGTGCGACCTGTTGAT 60.037 50.000 0.0 0.0 0.00 2.57 R
6522 7729 0.179032 ATGTGTGAGTTCACCCGCAA 60.179 50.000 9.6 0.0 45.88 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.299468 CCGTCGACATAGGCTGAGC 60.299 63.158 17.16 0.00 0.00 4.26
71 72 2.684104 CTCGAGGGAGGAGGGTCA 59.316 66.667 3.91 0.00 36.61 4.02
76 77 4.554036 GGGAGGAGGGTCATGCGC 62.554 72.222 0.00 0.00 0.00 6.09
77 78 4.554036 GGAGGAGGGTCATGCGCC 62.554 72.222 4.18 0.00 0.00 6.53
117 118 2.100252 GGGTTTTATTTTAGCGAGGGGC 59.900 50.000 0.00 0.00 44.05 5.80
136 137 4.910585 GTGGCGATAGGTGCGGGG 62.911 72.222 0.00 0.00 0.00 5.73
173 178 1.006832 CAATCACGGGGAAGTTAGCG 58.993 55.000 0.00 0.00 0.00 4.26
178 183 2.159198 TCACGGGGAAGTTAGCGATTAC 60.159 50.000 0.00 0.00 0.00 1.89
196 201 5.006261 CGATTACATTTGCGTGATTGTAGGA 59.994 40.000 0.00 0.00 0.00 2.94
197 202 6.456315 CGATTACATTTGCGTGATTGTAGGAA 60.456 38.462 0.00 0.00 0.00 3.36
204 209 1.135603 CGTGATTGTAGGAACGTCGGA 60.136 52.381 0.00 0.00 0.00 4.55
231 669 3.118531 AGGTGGAATATTCTCTGCAGGT 58.881 45.455 15.13 0.42 0.00 4.00
240 678 1.005748 CTCTGCAGGTGAAGCACGA 60.006 57.895 15.13 0.00 37.02 4.35
241 679 0.390866 CTCTGCAGGTGAAGCACGAT 60.391 55.000 15.13 0.00 37.02 3.73
242 680 0.390340 TCTGCAGGTGAAGCACGATC 60.390 55.000 15.13 0.00 37.02 3.69
277 715 1.134367 GCTACGTGCACACCATAGAGA 59.866 52.381 18.64 0.00 42.31 3.10
289 727 8.090831 TGCACACCATAGAGATATTAGATCAAC 58.909 37.037 0.00 0.00 0.00 3.18
295 733 7.651304 CCATAGAGATATTAGATCAACGATGGC 59.349 40.741 10.68 0.00 30.75 4.40
317 755 4.096984 GCTGTTAGATTCAGATTTGTGGGG 59.903 45.833 0.00 0.00 35.20 4.96
334 772 2.461110 GGCTAATCGTGCGGTGGTG 61.461 63.158 0.00 0.00 0.00 4.17
348 786 0.242825 GTGGTGAATGAGTCGTCCGA 59.757 55.000 0.00 0.00 0.00 4.55
352 790 2.098607 GGTGAATGAGTCGTCCGATGTA 59.901 50.000 0.00 0.00 0.00 2.29
354 792 3.014623 TGAATGAGTCGTCCGATGTACT 58.985 45.455 0.00 0.00 0.00 2.73
366 804 2.171870 CCGATGTACTGGGGGTAATTGT 59.828 50.000 0.00 0.00 31.56 2.71
384 822 2.582052 TGTGGGGTGCACTTAAGAAAG 58.418 47.619 17.98 0.00 38.77 2.62
393 831 5.743872 GGTGCACTTAAGAAAGTTCTTGTTG 59.256 40.000 17.98 10.28 43.60 3.33
416 854 9.614792 GTTGGATTGTTTAATAGTAGTGGAGAT 57.385 33.333 0.00 0.00 0.00 2.75
429 867 9.978336 ATAGTAGTGGAGATTAATAGTACTCCC 57.022 37.037 15.03 8.79 45.61 4.30
430 868 8.059565 AGTAGTGGAGATTAATAGTACTCCCT 57.940 38.462 15.03 13.58 45.61 4.20
431 869 8.165397 AGTAGTGGAGATTAATAGTACTCCCTC 58.835 40.741 15.03 9.98 45.61 4.30
432 870 6.316513 AGTGGAGATTAATAGTACTCCCTCC 58.683 44.000 15.03 11.61 45.61 4.30
433 871 5.183522 GTGGAGATTAATAGTACTCCCTCCG 59.816 48.000 15.03 0.00 45.61 4.63
434 872 5.163012 TGGAGATTAATAGTACTCCCTCCGT 60.163 44.000 15.03 0.00 45.61 4.69
435 873 5.415389 GGAGATTAATAGTACTCCCTCCGTC 59.585 48.000 0.00 0.00 41.89 4.79
436 874 5.323581 AGATTAATAGTACTCCCTCCGTCC 58.676 45.833 0.00 0.00 0.00 4.79
437 875 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
438 876 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
439 877 1.987807 TAGTACTCCCTCCGTCCGGG 61.988 65.000 0.00 0.00 43.38 5.73
440 878 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
441 879 3.650298 TACTCCCTCCGTCCGGGTG 62.650 68.421 0.00 0.00 42.56 4.61
443 881 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
444 882 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
445 883 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
446 884 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
447 885 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
448 886 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
449 887 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
450 888 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
451 889 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
452 890 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
453 891 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
454 892 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
455 893 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
456 894 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
457 895 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
458 896 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
459 897 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
460 898 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
461 899 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
462 900 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
463 901 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
464 902 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
465 903 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
466 904 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
467 905 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
468 906 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
469 907 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
470 908 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
471 909 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
472 910 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
473 911 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
474 912 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
475 913 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
476 914 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
477 915 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
478 916 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
479 917 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
480 918 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
481 919 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
482 920 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
483 921 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
484 922 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
485 923 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
486 924 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
487 925 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
488 926 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
490 928 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
530 968 9.529325 TGAAAAGTATATCACTAGATTTCCACG 57.471 33.333 0.00 0.00 36.04 4.94
531 969 7.948278 AAAGTATATCACTAGATTTCCACGC 57.052 36.000 0.00 0.00 36.04 5.34
532 970 5.700846 AGTATATCACTAGATTTCCACGCG 58.299 41.667 3.53 3.53 34.98 6.01
533 971 2.225068 ATCACTAGATTTCCACGCGG 57.775 50.000 12.47 0.00 0.00 6.46
534 972 1.179152 TCACTAGATTTCCACGCGGA 58.821 50.000 12.47 0.00 40.60 5.54
535 973 1.754803 TCACTAGATTTCCACGCGGAT 59.245 47.619 12.47 0.00 42.41 4.18
536 974 1.860950 CACTAGATTTCCACGCGGATG 59.139 52.381 12.47 0.00 42.41 3.51
537 975 1.480954 ACTAGATTTCCACGCGGATGT 59.519 47.619 12.47 0.00 42.41 3.06
538 976 2.691526 ACTAGATTTCCACGCGGATGTA 59.308 45.455 12.47 0.00 42.41 2.29
539 977 2.684001 AGATTTCCACGCGGATGTAA 57.316 45.000 12.47 0.00 42.41 2.41
540 978 3.194005 AGATTTCCACGCGGATGTAAT 57.806 42.857 12.47 3.68 42.41 1.89
541 979 3.541632 AGATTTCCACGCGGATGTAATT 58.458 40.909 12.47 0.00 42.41 1.40
542 980 3.945285 AGATTTCCACGCGGATGTAATTT 59.055 39.130 12.47 0.00 42.41 1.82
543 981 3.750639 TTTCCACGCGGATGTAATTTC 57.249 42.857 12.47 0.00 42.41 2.17
544 982 2.684001 TCCACGCGGATGTAATTTCT 57.316 45.000 12.47 0.00 35.91 2.52
545 983 3.804786 TCCACGCGGATGTAATTTCTA 57.195 42.857 12.47 0.00 35.91 2.10
546 984 4.126208 TCCACGCGGATGTAATTTCTAA 57.874 40.909 12.47 0.00 35.91 2.10
547 985 4.505808 TCCACGCGGATGTAATTTCTAAA 58.494 39.130 12.47 0.00 35.91 1.85
548 986 5.120399 TCCACGCGGATGTAATTTCTAAAT 58.880 37.500 12.47 0.00 35.91 1.40
549 987 6.282167 TCCACGCGGATGTAATTTCTAAATA 58.718 36.000 12.47 0.00 35.91 1.40
550 988 6.932400 TCCACGCGGATGTAATTTCTAAATAT 59.068 34.615 12.47 0.00 35.91 1.28
551 989 8.089597 TCCACGCGGATGTAATTTCTAAATATA 58.910 33.333 12.47 0.00 35.91 0.86
552 990 8.879759 CCACGCGGATGTAATTTCTAAATATAT 58.120 33.333 12.47 0.00 0.00 0.86
610 1048 8.897752 AGTTAAATTATCGACCTAGAACTACGT 58.102 33.333 0.00 0.00 0.00 3.57
611 1049 8.951969 GTTAAATTATCGACCTAGAACTACGTG 58.048 37.037 0.00 0.00 0.00 4.49
612 1050 6.932356 AATTATCGACCTAGAACTACGTGA 57.068 37.500 0.00 0.00 0.00 4.35
613 1051 6.932356 ATTATCGACCTAGAACTACGTGAA 57.068 37.500 0.00 0.00 0.00 3.18
614 1052 6.932356 TTATCGACCTAGAACTACGTGAAT 57.068 37.500 0.00 0.00 0.00 2.57
615 1053 4.611310 TCGACCTAGAACTACGTGAATG 57.389 45.455 0.00 0.00 0.00 2.67
616 1054 4.256110 TCGACCTAGAACTACGTGAATGA 58.744 43.478 0.00 0.00 0.00 2.57
617 1055 4.093998 TCGACCTAGAACTACGTGAATGAC 59.906 45.833 0.00 0.00 0.00 3.06
618 1056 4.094590 CGACCTAGAACTACGTGAATGACT 59.905 45.833 0.00 0.00 0.00 3.41
619 1057 5.391736 CGACCTAGAACTACGTGAATGACTT 60.392 44.000 0.00 0.00 0.00 3.01
620 1058 6.183360 CGACCTAGAACTACGTGAATGACTTA 60.183 42.308 0.00 0.00 0.00 2.24
621 1059 7.466996 CGACCTAGAACTACGTGAATGACTTAT 60.467 40.741 0.00 0.00 0.00 1.73
622 1060 8.743085 ACCTAGAACTACGTGAATGACTTATA 57.257 34.615 0.00 0.00 0.00 0.98
623 1061 8.619546 ACCTAGAACTACGTGAATGACTTATAC 58.380 37.037 0.00 0.00 0.00 1.47
624 1062 8.618677 CCTAGAACTACGTGAATGACTTATACA 58.381 37.037 0.00 0.00 0.00 2.29
625 1063 9.435802 CTAGAACTACGTGAATGACTTATACAC 57.564 37.037 0.00 0.00 0.00 2.90
626 1064 7.256286 AGAACTACGTGAATGACTTATACACC 58.744 38.462 0.00 0.00 0.00 4.16
627 1065 5.575957 ACTACGTGAATGACTTATACACCG 58.424 41.667 0.00 0.00 0.00 4.94
628 1066 3.777478 ACGTGAATGACTTATACACCGG 58.223 45.455 0.00 0.00 0.00 5.28
629 1067 3.120792 CGTGAATGACTTATACACCGGG 58.879 50.000 6.32 0.00 0.00 5.73
630 1068 3.181484 CGTGAATGACTTATACACCGGGA 60.181 47.826 6.32 0.00 0.00 5.14
631 1069 4.117685 GTGAATGACTTATACACCGGGAC 58.882 47.826 6.32 0.00 0.00 4.46
645 1083 2.804549 GGGACGGAGGTAGTAGTGG 58.195 63.158 0.00 0.00 0.00 4.00
646 1084 0.257039 GGGACGGAGGTAGTAGTGGA 59.743 60.000 0.00 0.00 0.00 4.02
647 1085 1.677942 GGACGGAGGTAGTAGTGGAG 58.322 60.000 0.00 0.00 0.00 3.86
648 1086 1.211457 GGACGGAGGTAGTAGTGGAGA 59.789 57.143 0.00 0.00 0.00 3.71
649 1087 2.158638 GGACGGAGGTAGTAGTGGAGAT 60.159 54.545 0.00 0.00 0.00 2.75
650 1088 2.879646 GACGGAGGTAGTAGTGGAGATG 59.120 54.545 0.00 0.00 0.00 2.90
651 1089 2.231529 CGGAGGTAGTAGTGGAGATGG 58.768 57.143 0.00 0.00 0.00 3.51
652 1090 2.158652 CGGAGGTAGTAGTGGAGATGGA 60.159 54.545 0.00 0.00 0.00 3.41
696 1135 2.627945 CCAACCGCCACGCATATATAT 58.372 47.619 0.00 0.00 0.00 0.86
703 1147 3.369756 CGCCACGCATATATATCCGTTTT 59.630 43.478 8.99 0.00 0.00 2.43
804 1258 3.195661 CATTTGACTACTACCGGCTTCC 58.804 50.000 0.00 0.00 0.00 3.46
1055 1509 3.080641 CTGCCACTGGGGATGTCA 58.919 61.111 0.00 0.00 40.01 3.58
1131 1585 9.705290 ATTAAAGTTTCGATTTTTGCTTGGTAT 57.295 25.926 0.00 0.00 0.00 2.73
1147 1606 1.790623 GGTATACTACATGGTTGCGCG 59.209 52.381 0.00 0.00 0.00 6.86
1163 1622 0.647410 CGCGAGTCCAGCATTTGTAG 59.353 55.000 0.00 0.00 34.19 2.74
1164 1623 0.375106 GCGAGTCCAGCATTTGTAGC 59.625 55.000 0.00 0.00 34.19 3.58
1165 1624 1.725641 CGAGTCCAGCATTTGTAGCA 58.274 50.000 0.00 0.00 0.00 3.49
1178 1714 8.981647 CAGCATTTGTAGCATTTCTTTAAAACT 58.018 29.630 0.00 0.00 0.00 2.66
1271 1839 5.858049 CACATTTGTAATTGTACTGCACCAG 59.142 40.000 0.00 0.00 37.52 4.00
1325 1893 5.596836 AGAAACCTGAAGAAATGTTTGCA 57.403 34.783 0.00 0.00 31.51 4.08
1335 1904 3.886505 AGAAATGTTTGCACCGTTAAGGA 59.113 39.130 0.00 0.00 45.00 3.36
1381 1950 2.912956 TGTGCCTATTGGAAGGAGAACT 59.087 45.455 0.00 0.00 39.15 3.01
1461 2050 9.077885 GAATTAAAGATGAAATAGCATGGGGTA 57.922 33.333 0.00 0.00 0.00 3.69
1469 2058 7.523293 TGAAATAGCATGGGGTATAATGTTG 57.477 36.000 0.00 0.00 36.73 3.33
1522 2111 4.097741 ACAGCTTGTCAATTTAGTGCAACA 59.902 37.500 0.00 0.00 41.43 3.33
1554 2144 5.556915 TGGTTCCAAGATTCGAGTTGTTAT 58.443 37.500 4.23 0.00 0.00 1.89
1608 2198 9.768662 AATGCTCTAAAATTGAACTGTTGAATT 57.231 25.926 11.40 11.40 0.00 2.17
1622 2212 5.125100 TGTTGAATTTGCTAGCCTTTCTG 57.875 39.130 13.29 0.00 0.00 3.02
1631 2221 1.208293 CTAGCCTTTCTGTCCTCCACC 59.792 57.143 0.00 0.00 0.00 4.61
1634 2224 0.247736 CCTTTCTGTCCTCCACCTCG 59.752 60.000 0.00 0.00 0.00 4.63
1635 2225 0.390472 CTTTCTGTCCTCCACCTCGC 60.390 60.000 0.00 0.00 0.00 5.03
1636 2226 0.832135 TTTCTGTCCTCCACCTCGCT 60.832 55.000 0.00 0.00 0.00 4.93
1638 2228 0.039180 TCTGTCCTCCACCTCGCTTA 59.961 55.000 0.00 0.00 0.00 3.09
1641 2231 1.112113 GTCCTCCACCTCGCTTATCA 58.888 55.000 0.00 0.00 0.00 2.15
1643 2233 2.103263 GTCCTCCACCTCGCTTATCAAT 59.897 50.000 0.00 0.00 0.00 2.57
1644 2234 2.365617 TCCTCCACCTCGCTTATCAATC 59.634 50.000 0.00 0.00 0.00 2.67
1645 2235 2.103094 CCTCCACCTCGCTTATCAATCA 59.897 50.000 0.00 0.00 0.00 2.57
1646 2236 3.244353 CCTCCACCTCGCTTATCAATCAT 60.244 47.826 0.00 0.00 0.00 2.45
1647 2237 4.384056 CTCCACCTCGCTTATCAATCATT 58.616 43.478 0.00 0.00 0.00 2.57
1668 2265 8.002984 TCATTCAACTTATGCATGTCATTCAT 57.997 30.769 10.16 3.41 34.69 2.57
1671 2268 5.585844 TCAACTTATGCATGTCATTCATCGT 59.414 36.000 10.16 0.00 36.63 3.73
1829 2443 7.847848 AGGTACCTTCCTTGATTACAGGTTATA 59.152 37.037 9.21 0.00 33.52 0.98
1865 2479 4.581309 TTCAGGAGAAAGATTGCATCCT 57.419 40.909 0.00 0.00 41.08 3.24
1956 2570 4.180057 GTCTCAATGACTCAAATCGAGCT 58.820 43.478 0.00 0.00 46.63 4.09
1986 2600 1.560505 TGCAGATCTGTACCTCAGCA 58.439 50.000 23.38 10.08 43.32 4.41
2018 2632 3.577848 TCTTTGGCAAATGTAAGCATGGT 59.422 39.130 13.89 0.00 35.15 3.55
2028 2642 7.359514 GCAAATGTAAGCATGGTTCTCTTTTTC 60.360 37.037 14.50 9.71 35.15 2.29
2047 2661 2.498167 TCTTGGAGCTCACTTTTCTGC 58.502 47.619 17.19 0.00 0.00 4.26
2218 2832 6.203338 GTCCTACTCCTGAATACTCTTCTACG 59.797 46.154 0.00 0.00 0.00 3.51
2256 2870 0.367210 GTAGAAAACTCGAGCGCTGC 59.633 55.000 18.48 5.60 0.00 5.25
2318 2932 6.589523 CCTCATGAACTCTGTAGAAAGTCAAG 59.410 42.308 0.00 0.00 0.00 3.02
2360 2974 1.875813 CGACAGCTGGCTGATCGTC 60.876 63.158 26.42 13.58 46.30 4.20
2383 2997 3.145286 TCATAGCAGATCCTCTCGTGAG 58.855 50.000 7.53 7.53 39.92 3.51
2455 3069 3.794690 CTCGAACGAGCTCAAGGAA 57.205 52.632 15.40 0.00 35.31 3.36
2551 3165 8.376203 CACATGTTAGAGAAGATTAAGTTGTCG 58.624 37.037 0.00 0.00 0.00 4.35
2581 3195 2.165998 CAGAAAGCTTCCTTCCAAGGG 58.834 52.381 0.00 0.00 46.47 3.95
2609 3223 2.533916 TCAAGACTCAGATGCAGGACT 58.466 47.619 0.00 0.00 0.00 3.85
2617 3231 0.035630 AGATGCAGGACTCAAGGCAC 60.036 55.000 0.00 0.00 39.34 5.01
2799 3413 8.547967 TCGCTCAAAATTACTCTTGATAAGTT 57.452 30.769 0.00 0.00 31.40 2.66
2826 3440 7.663081 TCATTGTTAATCAGAAGCTTCTCACTT 59.337 33.333 26.18 19.58 34.74 3.16
2995 3609 0.107654 GGTTAGCATCCCAGCGTTCT 60.108 55.000 0.00 0.00 40.15 3.01
3049 3663 8.482128 ACTTTCAATTTCATTTTGTTGGGAGTA 58.518 29.630 0.00 0.00 0.00 2.59
3138 3752 2.230660 GTGGGAAGTCCTTTGTTCCAG 58.769 52.381 3.65 0.00 43.65 3.86
3172 3786 6.761242 TCGGAAACTGTTATCCATCTGTTATG 59.239 38.462 16.49 0.00 35.34 1.90
3227 3841 1.853428 AGCAAGAATGGTGTGGGGT 59.147 52.632 0.00 0.00 35.55 4.95
3436 4075 6.349243 TGAATTTGATGTTTGCCTCAGAAT 57.651 33.333 0.00 0.00 0.00 2.40
3455 4094 8.798859 TCAGAATTTTATCTTTGGAGAAGGAG 57.201 34.615 0.00 0.00 35.07 3.69
3491 4131 4.717233 TGATGGCATTGTTGAACCATAC 57.283 40.909 0.00 0.00 42.92 2.39
3508 4148 7.824289 TGAACCATACAGGAAGAATAGTTGAAG 59.176 37.037 0.00 0.00 41.22 3.02
3509 4149 6.116126 ACCATACAGGAAGAATAGTTGAAGC 58.884 40.000 0.00 0.00 41.22 3.86
3510 4150 5.529060 CCATACAGGAAGAATAGTTGAAGCC 59.471 44.000 0.00 0.00 41.22 4.35
3511 4151 4.917906 ACAGGAAGAATAGTTGAAGCCT 57.082 40.909 0.00 0.00 0.00 4.58
3512 4152 5.248380 ACAGGAAGAATAGTTGAAGCCTT 57.752 39.130 0.00 0.00 0.00 4.35
3513 4153 5.006386 ACAGGAAGAATAGTTGAAGCCTTG 58.994 41.667 0.00 0.00 0.00 3.61
3514 4154 5.221925 ACAGGAAGAATAGTTGAAGCCTTGA 60.222 40.000 0.00 0.00 0.00 3.02
3515 4155 5.707298 CAGGAAGAATAGTTGAAGCCTTGAA 59.293 40.000 0.00 0.00 0.00 2.69
3624 4264 7.913297 TGCTTCAGTTTGCCGTATATATTTTTC 59.087 33.333 0.00 0.00 0.00 2.29
3688 4328 1.235724 GGTTAACTGCCACCTGTGTC 58.764 55.000 5.42 0.00 0.00 3.67
3780 4448 5.163131 ACCAGTTGACTACCACCTTTATTGT 60.163 40.000 0.00 0.00 0.00 2.71
3816 4484 0.392998 TCTTTCTCCTGGAATGGCGC 60.393 55.000 0.00 0.00 33.53 6.53
3851 4519 4.748102 CAGTTGTGCAATCTTTTTGCTCAT 59.252 37.500 13.70 0.83 44.77 2.90
3852 4520 4.986659 AGTTGTGCAATCTTTTTGCTCATC 59.013 37.500 13.70 12.87 44.77 2.92
3853 4521 4.587584 TGTGCAATCTTTTTGCTCATCA 57.412 36.364 11.18 3.84 45.13 3.07
4090 4758 5.475220 TCATGTACACAATTGTTAACCCCAG 59.525 40.000 8.77 0.00 37.15 4.45
4222 5194 8.190326 TGTATTATGTTATGGAGGGAGTACTG 57.810 38.462 0.00 0.00 0.00 2.74
4229 5201 2.111384 TGGAGGGAGTACTGCTGAATC 58.889 52.381 14.52 7.46 0.00 2.52
4236 5208 4.323104 GGGAGTACTGCTGAATCTTTGAGT 60.323 45.833 14.52 0.00 0.00 3.41
4267 5239 4.959596 AAAGATGCAGCAGTTGATGTAG 57.040 40.909 4.07 0.00 33.30 2.74
4268 5240 3.623906 AGATGCAGCAGTTGATGTAGT 57.376 42.857 4.07 0.00 33.30 2.73
4269 5241 4.743057 AGATGCAGCAGTTGATGTAGTA 57.257 40.909 4.07 0.00 33.30 1.82
4270 5242 4.437239 AGATGCAGCAGTTGATGTAGTAC 58.563 43.478 4.07 0.00 33.30 2.73
4278 5250 6.646653 CAGCAGTTGATGTAGTACTTGAGAAA 59.353 38.462 0.00 0.00 0.00 2.52
4490 5468 8.219105 GCTTTTTCTATGAAATTGCTCAACAAG 58.781 33.333 0.00 0.00 42.87 3.16
4544 5522 3.146066 TGCACTGGTTACTGATTTGACC 58.854 45.455 0.00 0.00 0.00 4.02
4546 5524 3.058224 GCACTGGTTACTGATTTGACCAC 60.058 47.826 0.00 0.00 37.26 4.16
4547 5525 3.502211 CACTGGTTACTGATTTGACCACC 59.498 47.826 0.00 0.00 37.26 4.61
4548 5526 3.137544 ACTGGTTACTGATTTGACCACCA 59.862 43.478 0.00 0.00 37.26 4.17
4550 5528 4.735369 TGGTTACTGATTTGACCACCATT 58.265 39.130 0.00 0.00 37.26 3.16
4552 5530 5.943416 TGGTTACTGATTTGACCACCATTAG 59.057 40.000 0.00 0.00 37.26 1.73
4553 5531 5.163652 GGTTACTGATTTGACCACCATTAGC 60.164 44.000 0.00 0.00 32.41 3.09
4554 5532 4.032960 ACTGATTTGACCACCATTAGCA 57.967 40.909 0.00 0.00 0.00 3.49
4555 5533 4.012374 ACTGATTTGACCACCATTAGCAG 58.988 43.478 0.00 0.00 32.73 4.24
4557 5535 4.858850 TGATTTGACCACCATTAGCAGAT 58.141 39.130 0.00 0.00 0.00 2.90
4558 5536 5.263599 TGATTTGACCACCATTAGCAGATT 58.736 37.500 0.00 0.00 0.00 2.40
4559 5537 6.422333 TGATTTGACCACCATTAGCAGATTA 58.578 36.000 0.00 0.00 0.00 1.75
4560 5538 6.318648 TGATTTGACCACCATTAGCAGATTAC 59.681 38.462 0.00 0.00 0.00 1.89
4561 5539 4.835284 TGACCACCATTAGCAGATTACA 57.165 40.909 0.00 0.00 0.00 2.41
4562 5540 5.372343 TGACCACCATTAGCAGATTACAT 57.628 39.130 0.00 0.00 0.00 2.29
4579 5557 8.077991 CAGATTACATCATTTTGCACCGATTAT 58.922 33.333 0.00 0.00 0.00 1.28
4741 5721 8.432805 ACATCTACACATAGCTTTAAGCCTTAT 58.567 33.333 13.84 3.19 43.77 1.73
4824 5804 3.072184 ACAAAAGTCTCAGTCTGCAGGAT 59.928 43.478 15.13 0.00 0.00 3.24
4830 5810 4.584325 AGTCTCAGTCTGCAGGATAGATTC 59.416 45.833 15.13 2.09 0.00 2.52
5109 6114 8.521176 TGTAGTCTACTTGTTTGATCCTCTTAC 58.479 37.037 11.28 0.00 0.00 2.34
5120 6125 7.125659 TGTTTGATCCTCTTACATGGAGTCATA 59.874 37.037 0.00 0.00 35.63 2.15
5198 6206 5.491982 TCCTCACTAGATTTTGAAAGAGCC 58.508 41.667 0.00 0.00 0.00 4.70
5317 6325 6.430308 AGAAATATCATGCGCAGATTCAGATT 59.570 34.615 18.32 11.75 0.00 2.40
5324 6332 7.929159 TCATGCGCAGATTCAGATTAAAATTA 58.071 30.769 18.32 0.00 0.00 1.40
5326 6334 8.635983 CATGCGCAGATTCAGATTAAAATTATG 58.364 33.333 18.32 0.00 0.00 1.90
5329 6337 7.857389 GCGCAGATTCAGATTAAAATTATGTCA 59.143 33.333 0.30 0.00 0.00 3.58
5351 6359 7.772292 TGTCAGAATATCTCTTTGCATTAAGCT 59.228 33.333 0.00 0.00 36.74 3.74
5409 6427 6.140896 GCACTATGCACATACTATGTAACG 57.859 41.667 1.19 0.00 44.26 3.18
5419 6438 1.737793 ACTATGTAACGCAGCTTTGCC 59.262 47.619 0.00 0.00 0.00 4.52
5426 6445 1.659335 CGCAGCTTTGCCACAAGTG 60.659 57.895 0.00 0.00 0.00 3.16
5427 6446 1.438814 GCAGCTTTGCCACAAGTGT 59.561 52.632 0.00 0.00 0.00 3.55
5428 6447 0.179103 GCAGCTTTGCCACAAGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
5429 6448 1.563111 CAGCTTTGCCACAAGTGTTG 58.437 50.000 0.00 0.00 0.00 3.33
5432 6451 1.134848 GCTTTGCCACAAGTGTTGGAA 60.135 47.619 0.00 0.00 34.12 3.53
5446 6465 2.558378 GTTGGAAACTCCGTATAGCCC 58.442 52.381 0.00 0.00 45.32 5.19
5447 6466 1.868713 TGGAAACTCCGTATAGCCCA 58.131 50.000 0.00 0.00 40.17 5.36
5448 6467 1.483415 TGGAAACTCCGTATAGCCCAC 59.517 52.381 0.00 0.00 40.17 4.61
5449 6468 1.483415 GGAAACTCCGTATAGCCCACA 59.517 52.381 0.00 0.00 0.00 4.17
5450 6469 2.483188 GGAAACTCCGTATAGCCCACAG 60.483 54.545 0.00 0.00 0.00 3.66
5462 6498 2.590821 AGCCCACAGATGCCAAATATC 58.409 47.619 0.00 0.00 0.00 1.63
5511 6547 7.616313 AGGAGTAGAGTTGAGTTGGAAAATAG 58.384 38.462 0.00 0.00 0.00 1.73
5517 6553 5.625150 AGTTGAGTTGGAAAATAGCAGACT 58.375 37.500 0.00 0.00 0.00 3.24
5518 6554 5.471456 AGTTGAGTTGGAAAATAGCAGACTG 59.529 40.000 0.00 0.00 0.00 3.51
5519 6555 3.753272 TGAGTTGGAAAATAGCAGACTGC 59.247 43.478 20.12 20.12 45.46 4.40
5538 6579 4.235079 TGCATTAGGGCAGTTCAATAGT 57.765 40.909 0.00 0.00 39.25 2.12
5541 6582 5.997746 TGCATTAGGGCAGTTCAATAGTATC 59.002 40.000 0.00 0.00 39.25 2.24
5557 6599 4.778213 AGTATCTCAAATGCCCTTGCTA 57.222 40.909 0.00 0.00 38.71 3.49
5624 6713 4.022068 TGCTTCCAACTTGCTCAAATAAGG 60.022 41.667 0.00 0.00 0.00 2.69
5638 6740 8.307483 TGCTCAAATAAGGTGCTACTATATCTC 58.693 37.037 0.00 0.00 0.00 2.75
5647 6749 4.703093 GTGCTACTATATCTCTGGACCCTC 59.297 50.000 0.00 0.00 0.00 4.30
5649 6751 5.015710 TGCTACTATATCTCTGGACCCTCAT 59.984 44.000 0.00 0.00 0.00 2.90
5662 6764 4.581824 TGGACCCTCATTATCGTGTACTAC 59.418 45.833 0.00 0.00 0.00 2.73
5663 6765 4.826183 GGACCCTCATTATCGTGTACTACT 59.174 45.833 0.00 0.00 0.00 2.57
5664 6766 5.278364 GGACCCTCATTATCGTGTACTACTG 60.278 48.000 0.00 0.00 0.00 2.74
5665 6767 4.037684 ACCCTCATTATCGTGTACTACTGC 59.962 45.833 0.00 0.00 0.00 4.40
5666 6768 4.278669 CCCTCATTATCGTGTACTACTGCT 59.721 45.833 0.00 0.00 0.00 4.24
5667 6769 5.472478 CCCTCATTATCGTGTACTACTGCTA 59.528 44.000 0.00 0.00 0.00 3.49
5686 6788 6.604795 ACTGCTAATATTTGATGAAACTGGCT 59.395 34.615 0.77 0.00 0.00 4.75
5703 6805 3.225104 TGGCTCAAAACTCAATCAAGCT 58.775 40.909 0.00 0.00 0.00 3.74
5709 6811 6.219417 TCAAAACTCAATCAAGCTTTGGAA 57.781 33.333 0.00 0.00 34.56 3.53
5723 6826 5.079643 AGCTTTGGAACCTGAACAACATAT 58.920 37.500 0.00 0.00 0.00 1.78
5725 6828 6.891908 AGCTTTGGAACCTGAACAACATATAT 59.108 34.615 0.00 0.00 0.00 0.86
5753 6909 0.109086 AGAGATCAACAGGTCGCACG 60.109 55.000 0.00 0.00 0.00 5.34
5774 6930 0.036164 TGTACTTCCACAGCCGCAAT 59.964 50.000 0.00 0.00 0.00 3.56
5775 6931 0.447801 GTACTTCCACAGCCGCAATG 59.552 55.000 0.00 0.00 0.00 2.82
5776 6932 0.676466 TACTTCCACAGCCGCAATGG 60.676 55.000 6.59 6.59 42.50 3.16
5777 6933 1.675310 CTTCCACAGCCGCAATGGA 60.675 57.895 10.75 10.75 42.00 3.41
5778 6934 1.926511 CTTCCACAGCCGCAATGGAC 61.927 60.000 13.69 0.00 42.26 4.02
5780 6936 2.693762 CCACAGCCGCAATGGACAG 61.694 63.158 7.04 0.00 42.00 3.51
5782 6938 1.028330 CACAGCCGCAATGGACAGAT 61.028 55.000 0.00 0.00 42.00 2.90
5783 6939 0.322816 ACAGCCGCAATGGACAGATT 60.323 50.000 0.00 0.00 42.00 2.40
5807 6969 5.627499 AATGTCACAAAGCGAACATGTAT 57.373 34.783 0.00 0.00 32.88 2.29
5808 6970 4.661993 TGTCACAAAGCGAACATGTATC 57.338 40.909 0.00 0.00 0.00 2.24
5809 6971 4.314961 TGTCACAAAGCGAACATGTATCT 58.685 39.130 0.00 0.00 0.00 1.98
5811 6973 5.107104 TGTCACAAAGCGAACATGTATCTTC 60.107 40.000 0.00 0.00 0.00 2.87
5813 6975 4.154015 CACAAAGCGAACATGTATCTTCCA 59.846 41.667 0.00 0.00 0.00 3.53
5814 6976 4.943705 ACAAAGCGAACATGTATCTTCCAT 59.056 37.500 0.00 0.00 0.00 3.41
5815 6977 5.065218 ACAAAGCGAACATGTATCTTCCATC 59.935 40.000 0.00 0.00 0.00 3.51
5823 6993 4.411540 ACATGTATCTTCCATCCTGCTCTT 59.588 41.667 0.00 0.00 0.00 2.85
5830 7000 4.964897 TCTTCCATCCTGCTCTTTATCTCA 59.035 41.667 0.00 0.00 0.00 3.27
5836 7006 6.183360 CCATCCTGCTCTTTATCTCAAGTAGT 60.183 42.308 0.00 0.00 0.00 2.73
5848 7018 5.363562 TCTCAAGTAGTGCCATGAATCAT 57.636 39.130 0.00 0.00 0.00 2.45
5853 7023 3.881688 AGTAGTGCCATGAATCATGAAGC 59.118 43.478 23.55 18.63 43.81 3.86
5861 7031 1.025041 GAATCATGAAGCCGGGGTTC 58.975 55.000 27.64 27.64 40.03 3.62
5863 7033 1.281925 ATCATGAAGCCGGGGTTCCT 61.282 55.000 30.13 20.87 39.02 3.36
5864 7034 1.452108 CATGAAGCCGGGGTTCCTC 60.452 63.158 30.13 12.25 39.02 3.71
5879 7051 1.597854 CCTCAAGAACACGGCAGCA 60.598 57.895 0.00 0.00 0.00 4.41
5891 7063 2.334946 GGCAGCACCGCAAGAATCA 61.335 57.895 0.00 0.00 43.02 2.57
5894 7066 1.904144 CAGCACCGCAAGAATCATTG 58.096 50.000 0.00 0.00 43.02 2.82
5901 7073 5.007626 GCACCGCAAGAATCATTGAATAGTA 59.992 40.000 0.00 0.00 43.02 1.82
5902 7074 6.653183 CACCGCAAGAATCATTGAATAGTAG 58.347 40.000 0.00 0.00 43.02 2.57
5903 7075 6.258727 CACCGCAAGAATCATTGAATAGTAGT 59.741 38.462 0.00 0.00 43.02 2.73
5904 7076 7.438160 CACCGCAAGAATCATTGAATAGTAGTA 59.562 37.037 0.00 0.00 43.02 1.82
5905 7077 7.653713 ACCGCAAGAATCATTGAATAGTAGTAG 59.346 37.037 0.00 0.00 43.02 2.57
5907 7079 9.678941 CGCAAGAATCATTGAATAGTAGTAGTA 57.321 33.333 0.00 0.00 43.02 1.82
6084 7256 1.227089 CGCGGCTGATGAAGTAGCT 60.227 57.895 0.00 0.00 39.80 3.32
6273 7445 2.166459 TCGATTCTTCTTGGATGCTCGT 59.834 45.455 0.00 0.00 0.00 4.18
6274 7446 3.380320 TCGATTCTTCTTGGATGCTCGTA 59.620 43.478 0.00 0.00 0.00 3.43
6275 7447 3.487574 CGATTCTTCTTGGATGCTCGTAC 59.512 47.826 0.00 0.00 0.00 3.67
6276 7448 2.561733 TCTTCTTGGATGCTCGTACG 57.438 50.000 9.53 9.53 0.00 3.67
6297 7476 1.826921 GCTGGTACGATCGGGGAGA 60.827 63.158 20.98 0.00 0.00 3.71
6309 7488 0.533032 CGGGGAGAGAGAGGAACAAC 59.467 60.000 0.00 0.00 0.00 3.32
6432 7611 4.076244 GGATACGGGCTCTCGCTA 57.924 61.111 0.00 0.00 36.09 4.26
6433 7612 2.338381 GGATACGGGCTCTCGCTAA 58.662 57.895 0.00 0.00 36.09 3.09
6486 7693 0.909610 TTGGTCCCCGCTCTCATCTT 60.910 55.000 0.00 0.00 0.00 2.40
6495 7702 1.202687 CGCTCTCATCTTGGCCCATTA 60.203 52.381 0.00 0.00 0.00 1.90
6496 7703 2.551721 CGCTCTCATCTTGGCCCATTAT 60.552 50.000 0.00 0.00 0.00 1.28
6497 7704 3.306989 CGCTCTCATCTTGGCCCATTATA 60.307 47.826 0.00 0.00 0.00 0.98
6498 7705 4.006319 GCTCTCATCTTGGCCCATTATAC 58.994 47.826 0.00 0.00 0.00 1.47
6499 7706 4.263243 GCTCTCATCTTGGCCCATTATACT 60.263 45.833 0.00 0.00 0.00 2.12
6500 7707 5.486526 CTCTCATCTTGGCCCATTATACTC 58.513 45.833 0.00 0.00 0.00 2.59
6501 7708 4.907269 TCTCATCTTGGCCCATTATACTCA 59.093 41.667 0.00 0.00 0.00 3.41
6502 7709 4.973168 TCATCTTGGCCCATTATACTCAC 58.027 43.478 0.00 0.00 0.00 3.51
6503 7710 4.411869 TCATCTTGGCCCATTATACTCACA 59.588 41.667 0.00 0.00 0.00 3.58
6504 7711 4.150897 TCTTGGCCCATTATACTCACAC 57.849 45.455 0.00 0.00 0.00 3.82
6505 7712 3.521531 TCTTGGCCCATTATACTCACACA 59.478 43.478 0.00 0.00 0.00 3.72
6506 7713 4.165950 TCTTGGCCCATTATACTCACACAT 59.834 41.667 0.00 0.00 0.00 3.21
6507 7714 5.368230 TCTTGGCCCATTATACTCACACATA 59.632 40.000 0.00 0.00 0.00 2.29
6508 7715 5.227569 TGGCCCATTATACTCACACATAG 57.772 43.478 0.00 0.00 0.00 2.23
6509 7716 4.041567 TGGCCCATTATACTCACACATAGG 59.958 45.833 0.00 0.00 0.00 2.57
6510 7717 4.286032 GGCCCATTATACTCACACATAGGA 59.714 45.833 0.00 0.00 0.00 2.94
6511 7718 5.482908 GCCCATTATACTCACACATAGGAG 58.517 45.833 0.00 0.00 37.18 3.69
6512 7719 5.012148 GCCCATTATACTCACACATAGGAGT 59.988 44.000 0.00 0.00 45.72 3.85
6514 7721 7.603651 CCCATTATACTCACACATAGGAGTAC 58.396 42.308 3.85 0.00 46.17 2.73
6515 7722 7.451877 CCCATTATACTCACACATAGGAGTACT 59.548 40.741 0.00 0.00 46.17 2.73
6516 7723 9.516546 CCATTATACTCACACATAGGAGTACTA 57.483 37.037 0.00 0.00 46.17 1.82
6662 9256 3.063997 AGCTTTATATGTGCGTGAACAGC 59.936 43.478 0.00 0.00 32.52 4.40
6664 9258 4.270084 GCTTTATATGTGCGTGAACAGCTA 59.730 41.667 0.00 0.00 32.52 3.32
6667 9261 4.801147 ATATGTGCGTGAACAGCTATTG 57.199 40.909 0.00 0.00 32.52 1.90
6680 9274 7.693951 GTGAACAGCTATTGAACATGTGAATAC 59.306 37.037 0.00 1.78 0.00 1.89
6826 9611 2.036217 TCCAGAATCGTACACGGTTTGT 59.964 45.455 1.27 0.00 43.48 2.83
6870 9693 1.274596 GTAATCCAGCACGTACACGG 58.725 55.000 6.72 0.00 44.95 4.94
6872 9695 2.167398 AATCCAGCACGTACACGGCT 62.167 55.000 6.72 8.98 43.15 5.52
6875 9698 3.359523 AGCACGTACACGGCTCGA 61.360 61.111 6.72 0.00 44.95 4.04
6876 9699 2.202570 GCACGTACACGGCTCGAT 60.203 61.111 6.72 0.00 44.95 3.59
6912 9735 3.558505 GATCAACATATACGTACGCGGT 58.441 45.455 16.72 0.39 43.45 5.68
6921 9744 2.104859 CGTACGCGGTCTCTCTCCA 61.105 63.158 12.47 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.944372 CCTATGTCGACGGGCGGC 62.944 72.222 11.62 0.00 46.88 6.53
5 6 4.944372 GCCTATGTCGACGGGCGG 62.944 72.222 23.89 16.45 41.33 6.13
7 8 2.279517 CAGCCTATGTCGACGGGC 60.280 66.667 27.98 27.98 44.38 6.13
8 9 1.360551 CTCAGCCTATGTCGACGGG 59.639 63.158 11.62 13.59 0.00 5.28
9 10 1.299468 GCTCAGCCTATGTCGACGG 60.299 63.158 11.62 7.36 0.00 4.79
10 11 1.299468 GGCTCAGCCTATGTCGACG 60.299 63.158 9.09 0.00 46.69 5.12
11 12 4.740235 GGCTCAGCCTATGTCGAC 57.260 61.111 9.09 9.11 46.69 4.20
50 51 3.535962 CCTCCTCCCTCGAGCAGC 61.536 72.222 6.99 0.00 34.49 5.25
88 89 2.425578 AAAATAAAACCCACACGCCG 57.574 45.000 0.00 0.00 0.00 6.46
136 137 1.418334 TGCATCTCTTCTAGCCCCTC 58.582 55.000 0.00 0.00 0.00 4.30
159 164 1.826720 TGTAATCGCTAACTTCCCCGT 59.173 47.619 0.00 0.00 0.00 5.28
163 168 4.201783 ACGCAAATGTAATCGCTAACTTCC 60.202 41.667 0.00 0.00 0.00 3.46
173 178 6.358118 TCCTACAATCACGCAAATGTAATC 57.642 37.500 0.00 0.00 0.00 1.75
178 183 3.120338 ACGTTCCTACAATCACGCAAATG 60.120 43.478 0.00 0.00 36.05 2.32
196 201 3.357079 ACCTACGCGTCCGACGTT 61.357 61.111 18.63 11.77 44.73 3.99
197 202 4.093952 CACCTACGCGTCCGACGT 62.094 66.667 18.63 11.39 44.73 4.34
204 209 2.957006 AGAGAATATTCCACCTACGCGT 59.043 45.455 19.17 19.17 0.00 6.01
231 669 1.089112 CATTGGCTGATCGTGCTTCA 58.911 50.000 9.79 0.00 0.00 3.02
240 678 3.067180 CGTAGCAATTTCCATTGGCTGAT 59.933 43.478 0.00 0.00 40.36 2.90
241 679 2.423185 CGTAGCAATTTCCATTGGCTGA 59.577 45.455 0.00 0.00 40.36 4.26
242 680 2.164219 ACGTAGCAATTTCCATTGGCTG 59.836 45.455 0.00 0.00 40.36 4.85
277 715 7.896811 TCTAACAGCCATCGTTGATCTAATAT 58.103 34.615 0.00 0.00 0.00 1.28
289 727 5.295292 ACAAATCTGAATCTAACAGCCATCG 59.705 40.000 0.00 0.00 35.61 3.84
295 733 4.096984 GCCCCACAAATCTGAATCTAACAG 59.903 45.833 0.00 0.00 36.80 3.16
317 755 1.017177 TTCACCACCGCACGATTAGC 61.017 55.000 0.00 0.00 0.00 3.09
334 772 3.364062 CAGTACATCGGACGACTCATTC 58.636 50.000 0.00 0.00 0.00 2.67
348 786 2.243736 CCCACAATTACCCCCAGTACAT 59.756 50.000 0.00 0.00 0.00 2.29
352 790 0.778479 ACCCCACAATTACCCCCAGT 60.778 55.000 0.00 0.00 0.00 4.00
354 792 1.777639 CACCCCACAATTACCCCCA 59.222 57.895 0.00 0.00 0.00 4.96
366 804 3.117663 AGAACTTTCTTAAGTGCACCCCA 60.118 43.478 14.63 0.00 43.74 4.96
407 845 7.468496 GGAGGGAGTACTATTAATCTCCACTA 58.532 42.308 18.00 0.00 45.65 2.74
416 854 3.480470 CGGACGGAGGGAGTACTATTAA 58.520 50.000 0.00 0.00 0.00 1.40
417 855 2.224621 CCGGACGGAGGGAGTACTATTA 60.225 54.545 4.40 0.00 37.50 0.98
418 856 1.478288 CCGGACGGAGGGAGTACTATT 60.478 57.143 4.40 0.00 37.50 1.73
419 857 0.110104 CCGGACGGAGGGAGTACTAT 59.890 60.000 4.40 0.00 37.50 2.12
420 858 1.528824 CCGGACGGAGGGAGTACTA 59.471 63.158 4.40 0.00 37.50 1.82
421 859 2.274760 CCGGACGGAGGGAGTACT 59.725 66.667 4.40 0.00 37.50 2.73
428 866 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
429 867 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
430 868 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
431 869 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
432 870 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
433 871 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
434 872 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
435 873 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
436 874 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
437 875 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
438 876 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
439 877 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
440 878 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
441 879 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
442 880 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
443 881 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
444 882 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
445 883 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
446 884 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
447 885 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
448 886 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
449 887 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
450 888 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
451 889 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
452 890 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
453 891 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
454 892 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
455 893 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
456 894 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
457 895 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
458 896 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
459 897 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
460 898 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
461 899 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
462 900 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
464 902 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
504 942 9.529325 CGTGGAAATCTAGTGATATACTTTTCA 57.471 33.333 0.00 0.00 40.89 2.69
505 943 8.488764 GCGTGGAAATCTAGTGATATACTTTTC 58.511 37.037 0.00 0.00 40.89 2.29
506 944 7.169308 CGCGTGGAAATCTAGTGATATACTTTT 59.831 37.037 0.00 0.00 40.89 2.27
507 945 6.641314 CGCGTGGAAATCTAGTGATATACTTT 59.359 38.462 0.00 0.00 40.89 2.66
508 946 6.150318 CGCGTGGAAATCTAGTGATATACTT 58.850 40.000 0.00 0.00 40.89 2.24
509 947 5.335740 CCGCGTGGAAATCTAGTGATATACT 60.336 44.000 10.20 0.00 39.66 2.12
510 948 4.857588 CCGCGTGGAAATCTAGTGATATAC 59.142 45.833 10.20 0.00 37.49 1.47
511 949 4.763279 TCCGCGTGGAAATCTAGTGATATA 59.237 41.667 17.09 0.00 42.85 0.86
512 950 3.572682 TCCGCGTGGAAATCTAGTGATAT 59.427 43.478 17.09 0.00 42.85 1.63
513 951 2.953648 TCCGCGTGGAAATCTAGTGATA 59.046 45.455 17.09 0.00 42.85 2.15
514 952 1.754803 TCCGCGTGGAAATCTAGTGAT 59.245 47.619 17.09 0.00 42.85 3.06
515 953 1.179152 TCCGCGTGGAAATCTAGTGA 58.821 50.000 17.09 0.00 42.85 3.41
516 954 3.733236 TCCGCGTGGAAATCTAGTG 57.267 52.632 17.09 0.00 42.85 2.74
526 964 4.868450 TTTAGAAATTACATCCGCGTGG 57.132 40.909 9.28 9.28 0.00 4.94
584 1022 8.897752 ACGTAGTTCTAGGTCGATAATTTAACT 58.102 33.333 0.00 0.00 37.78 2.24
585 1023 8.951969 CACGTAGTTCTAGGTCGATAATTTAAC 58.048 37.037 0.00 0.00 41.61 2.01
586 1024 8.892723 TCACGTAGTTCTAGGTCGATAATTTAA 58.107 33.333 0.00 0.00 41.61 1.52
587 1025 8.437360 TCACGTAGTTCTAGGTCGATAATTTA 57.563 34.615 0.00 0.00 41.61 1.40
588 1026 7.325660 TCACGTAGTTCTAGGTCGATAATTT 57.674 36.000 0.00 0.00 41.61 1.82
589 1027 6.932356 TCACGTAGTTCTAGGTCGATAATT 57.068 37.500 0.00 0.00 41.61 1.40
590 1028 6.932356 TTCACGTAGTTCTAGGTCGATAAT 57.068 37.500 0.00 0.00 41.61 1.28
591 1029 6.539826 TCATTCACGTAGTTCTAGGTCGATAA 59.460 38.462 0.00 0.00 41.61 1.75
592 1030 6.018425 GTCATTCACGTAGTTCTAGGTCGATA 60.018 42.308 0.00 0.00 41.61 2.92
593 1031 4.880120 TCATTCACGTAGTTCTAGGTCGAT 59.120 41.667 0.00 0.00 41.61 3.59
594 1032 4.093998 GTCATTCACGTAGTTCTAGGTCGA 59.906 45.833 0.00 0.00 41.61 4.20
595 1033 4.094590 AGTCATTCACGTAGTTCTAGGTCG 59.905 45.833 0.00 0.00 41.61 4.79
596 1034 5.564048 AGTCATTCACGTAGTTCTAGGTC 57.436 43.478 0.00 0.00 41.61 3.85
597 1035 5.979288 AAGTCATTCACGTAGTTCTAGGT 57.021 39.130 0.00 0.20 41.61 3.08
598 1036 8.618677 TGTATAAGTCATTCACGTAGTTCTAGG 58.381 37.037 0.00 0.00 41.61 3.02
599 1037 9.435802 GTGTATAAGTCATTCACGTAGTTCTAG 57.564 37.037 0.00 0.00 41.61 2.43
600 1038 8.400947 GGTGTATAAGTCATTCACGTAGTTCTA 58.599 37.037 0.00 0.00 41.61 2.10
601 1039 7.256286 GGTGTATAAGTCATTCACGTAGTTCT 58.744 38.462 0.00 0.00 41.61 3.01
602 1040 6.195983 CGGTGTATAAGTCATTCACGTAGTTC 59.804 42.308 0.00 0.00 41.61 3.01
603 1041 6.032094 CGGTGTATAAGTCATTCACGTAGTT 58.968 40.000 0.00 0.00 41.61 2.24
605 1043 4.974275 CCGGTGTATAAGTCATTCACGTAG 59.026 45.833 0.00 0.00 36.16 3.51
606 1044 4.202040 CCCGGTGTATAAGTCATTCACGTA 60.202 45.833 0.00 0.00 36.16 3.57
607 1045 3.429822 CCCGGTGTATAAGTCATTCACGT 60.430 47.826 0.00 0.00 36.16 4.49
608 1046 3.120792 CCCGGTGTATAAGTCATTCACG 58.879 50.000 0.00 0.00 36.16 4.35
609 1047 4.117685 GTCCCGGTGTATAAGTCATTCAC 58.882 47.826 0.00 0.00 34.95 3.18
610 1048 3.181484 CGTCCCGGTGTATAAGTCATTCA 60.181 47.826 0.00 0.00 0.00 2.57
611 1049 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
612 1050 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
613 1051 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
614 1052 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
615 1053 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
626 1064 1.099879 CCACTACTACCTCCGTCCCG 61.100 65.000 0.00 0.00 0.00 5.14
627 1065 0.257039 TCCACTACTACCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
628 1066 1.211457 TCTCCACTACTACCTCCGTCC 59.789 57.143 0.00 0.00 0.00 4.79
629 1067 2.706339 TCTCCACTACTACCTCCGTC 57.294 55.000 0.00 0.00 0.00 4.79
630 1068 2.423088 CCATCTCCACTACTACCTCCGT 60.423 54.545 0.00 0.00 0.00 4.69
631 1069 2.158652 TCCATCTCCACTACTACCTCCG 60.159 54.545 0.00 0.00 0.00 4.63
632 1070 3.138653 TCTCCATCTCCACTACTACCTCC 59.861 52.174 0.00 0.00 0.00 4.30
633 1071 4.440826 TCTCCATCTCCACTACTACCTC 57.559 50.000 0.00 0.00 0.00 3.85
634 1072 4.883021 TTCTCCATCTCCACTACTACCT 57.117 45.455 0.00 0.00 0.00 3.08
635 1073 5.934402 TTTTCTCCATCTCCACTACTACC 57.066 43.478 0.00 0.00 0.00 3.18
636 1074 6.517605 GGATTTTCTCCATCTCCACTACTAC 58.482 44.000 0.00 0.00 44.26 2.73
637 1075 6.732896 GGATTTTCTCCATCTCCACTACTA 57.267 41.667 0.00 0.00 44.26 1.82
638 1076 5.622346 GGATTTTCTCCATCTCCACTACT 57.378 43.478 0.00 0.00 44.26 2.57
650 1088 4.398044 TGAATTAGCCGTTGGATTTTCTCC 59.602 41.667 0.00 0.00 45.19 3.71
651 1089 5.560966 TGAATTAGCCGTTGGATTTTCTC 57.439 39.130 0.00 0.00 0.00 2.87
652 1090 5.567138 CTGAATTAGCCGTTGGATTTTCT 57.433 39.130 0.00 0.00 0.00 2.52
696 1135 4.461781 TGGGAGTAAACAAAACAAAACGGA 59.538 37.500 0.00 0.00 0.00 4.69
703 1147 1.677052 GGCGTGGGAGTAAACAAAACA 59.323 47.619 0.00 0.00 0.00 2.83
996 1450 2.551270 GCCGCCATTATCTTCGCG 59.449 61.111 0.00 0.00 44.08 5.87
1131 1585 0.528924 ACTCGCGCAACCATGTAGTA 59.471 50.000 8.75 0.00 0.00 1.82
1147 1606 4.397417 AGAAATGCTACAAATGCTGGACTC 59.603 41.667 0.00 0.00 0.00 3.36
1178 1714 6.819649 GTGTGTGTAAAGGCACCATATAAGTA 59.180 38.462 0.00 0.00 38.52 2.24
1179 1715 5.646360 GTGTGTGTAAAGGCACCATATAAGT 59.354 40.000 0.00 0.00 38.52 2.24
1180 1716 6.119144 GTGTGTGTAAAGGCACCATATAAG 57.881 41.667 0.00 0.00 38.52 1.73
1188 1724 1.961793 TCAGGTGTGTGTAAAGGCAC 58.038 50.000 0.00 0.00 39.65 5.01
1271 1839 3.947834 AGGAGGTTTTACAGCATATGCAC 59.052 43.478 28.62 16.42 45.16 4.57
1325 1893 5.687166 TCCATGAAACTATCCTTAACGGT 57.313 39.130 0.00 0.00 0.00 4.83
1359 1928 3.525199 AGTTCTCCTTCCAATAGGCACAT 59.475 43.478 0.00 0.00 35.15 3.21
1440 2029 9.028284 CATTATACCCCATGCTATTTCATCTTT 57.972 33.333 0.00 0.00 0.00 2.52
1441 2030 8.172741 ACATTATACCCCATGCTATTTCATCTT 58.827 33.333 0.00 0.00 0.00 2.40
1452 2041 1.269448 CGCCAACATTATACCCCATGC 59.731 52.381 0.00 0.00 0.00 4.06
1461 2050 1.091537 CCACGGTTCGCCAACATTAT 58.908 50.000 0.00 0.00 37.00 1.28
1492 2081 4.574599 AAATTGACAAGCTGTCCTCAAC 57.425 40.909 11.99 0.00 46.40 3.18
1522 2111 4.818546 CGAATCTTGGAACCAATAGCAGAT 59.181 41.667 6.74 3.35 35.20 2.90
1554 2144 6.183360 GCGTTCACCACAGATATGGAAATTAA 60.183 38.462 0.00 0.00 43.02 1.40
1608 2198 1.279271 GGAGGACAGAAAGGCTAGCAA 59.721 52.381 18.24 0.00 0.00 3.91
1613 2203 0.474660 AGGTGGAGGACAGAAAGGCT 60.475 55.000 0.00 0.00 0.00 4.58
1622 2212 1.112113 TGATAAGCGAGGTGGAGGAC 58.888 55.000 0.00 0.00 0.00 3.85
1631 2221 7.533222 GCATAAGTTGAATGATTGATAAGCGAG 59.467 37.037 0.00 0.00 0.00 5.03
1634 2224 8.912658 CATGCATAAGTTGAATGATTGATAAGC 58.087 33.333 0.00 0.00 43.33 3.09
1635 2225 9.961265 ACATGCATAAGTTGAATGATTGATAAG 57.039 29.630 0.00 0.00 43.33 1.73
1636 2226 9.955208 GACATGCATAAGTTGAATGATTGATAA 57.045 29.630 0.00 0.00 43.33 1.75
1638 2228 8.002984 TGACATGCATAAGTTGAATGATTGAT 57.997 30.769 0.00 0.00 43.33 2.57
1641 2231 8.471609 TGAATGACATGCATAAGTTGAATGATT 58.528 29.630 0.00 0.00 43.33 2.57
1643 2233 7.393841 TGAATGACATGCATAAGTTGAATGA 57.606 32.000 0.00 0.00 43.33 2.57
1644 2234 7.112984 CGATGAATGACATGCATAAGTTGAATG 59.887 37.037 9.01 0.00 45.76 2.67
1645 2235 7.136772 CGATGAATGACATGCATAAGTTGAAT 58.863 34.615 9.01 0.00 39.56 2.57
1646 2236 6.093909 ACGATGAATGACATGCATAAGTTGAA 59.906 34.615 9.01 0.00 39.56 2.69
1647 2237 5.585844 ACGATGAATGACATGCATAAGTTGA 59.414 36.000 9.01 0.00 39.56 3.18
1668 2265 2.616376 CAGTTGTGGGATGAAAACACGA 59.384 45.455 0.00 0.00 37.92 4.35
1671 2268 2.100584 GTGCAGTTGTGGGATGAAAACA 59.899 45.455 0.00 0.00 0.00 2.83
1805 2419 9.895138 TTTATAACCTGTAATCAAGGAAGGTAC 57.105 33.333 0.00 0.00 40.37 3.34
1829 2443 7.543359 TTCTCCTGAATCATTGGTTGAATTT 57.457 32.000 0.00 0.00 38.03 1.82
1835 2449 6.350780 GCAATCTTTCTCCTGAATCATTGGTT 60.351 38.462 0.00 0.00 34.94 3.67
1837 2451 5.126545 TGCAATCTTTCTCCTGAATCATTGG 59.873 40.000 0.00 0.00 34.94 3.16
1956 2570 5.357878 GGTACAGATCTGCATTTTGAATCCA 59.642 40.000 22.83 0.00 0.00 3.41
1986 2600 4.590222 ACATTTGCCAAAGATTCCTTCACT 59.410 37.500 0.00 0.00 0.00 3.41
2018 2632 5.041191 AGTGAGCTCCAAGAAAAAGAGAA 57.959 39.130 12.15 0.00 0.00 2.87
2028 2642 2.225963 CAGCAGAAAAGTGAGCTCCAAG 59.774 50.000 12.15 0.00 34.61 3.61
2218 2832 4.891037 GCCCCAGAGCCTCCATGC 62.891 72.222 0.00 0.00 0.00 4.06
2241 2855 0.671781 ATCAGCAGCGCTCGAGTTTT 60.672 50.000 7.13 0.00 36.40 2.43
2256 2870 8.975410 TTCTTTTGTATGATTTTGCAGATCAG 57.025 30.769 16.69 5.47 36.99 2.90
2318 2932 5.689383 TTGTCTCTGGCATAAAGAACAAC 57.311 39.130 0.00 0.00 0.00 3.32
2383 2997 0.462581 TGAGAATGCACCGATCAGCC 60.463 55.000 0.00 0.00 0.00 4.85
2391 3005 2.294233 TCAAAAGCACTGAGAATGCACC 59.706 45.455 0.00 0.00 45.92 5.01
2440 3054 2.670414 CTCACATTCCTTGAGCTCGTTC 59.330 50.000 9.64 0.00 34.41 3.95
2446 3060 5.669477 AGACTAATCTCACATTCCTTGAGC 58.331 41.667 0.00 0.00 40.39 4.26
2455 3069 7.594351 TCTCATGCTAAGACTAATCTCACAT 57.406 36.000 0.00 0.00 32.34 3.21
2551 3165 3.384789 AGGAAGCTTTCTGAAAACCCAAC 59.615 43.478 6.42 0.00 0.00 3.77
2581 3195 4.940046 TGCATCTGAGTCTTGAATTTCTCC 59.060 41.667 0.00 0.00 0.00 3.71
2609 3223 0.036732 AGGATTTCTGCGTGCCTTGA 59.963 50.000 0.00 0.00 0.00 3.02
2617 3231 1.480137 AGAGTCCTCAGGATTTCTGCG 59.520 52.381 9.36 0.00 43.06 5.18
2799 3413 7.663081 AGTGAGAAGCTTCTGATTAACAATGAA 59.337 33.333 33.07 0.00 37.73 2.57
2802 3416 7.992754 AAGTGAGAAGCTTCTGATTAACAAT 57.007 32.000 33.07 18.93 37.73 2.71
2826 3440 4.019321 CCTGTATGAGGTGGGAAAAGAGAA 60.019 45.833 0.00 0.00 37.02 2.87
2995 3609 3.628942 GCATATTTGATCCAGTCAGTGCA 59.371 43.478 0.00 0.00 38.29 4.57
3049 3663 0.392336 TTCCAGCAAAGCCGCAAATT 59.608 45.000 0.00 0.00 0.00 1.82
3138 3752 5.220796 GGATAACAGTTTCCGAGTAAATGGC 60.221 44.000 0.00 0.00 0.00 4.40
3227 3841 2.357760 GCGAACCCAGTACGGCAA 60.358 61.111 0.00 0.00 0.00 4.52
3436 4075 7.448469 CCAAAGTCTCCTTCTCCAAAGATAAAA 59.552 37.037 0.00 0.00 0.00 1.52
3455 4094 2.102578 CCATCAACCCCATCCAAAGTC 58.897 52.381 0.00 0.00 0.00 3.01
3491 4131 5.248640 TCAAGGCTTCAACTATTCTTCCTG 58.751 41.667 0.00 0.00 0.00 3.86
3624 4264 2.426738 TGTGACCTTGCACCTTGAAAAG 59.573 45.455 0.00 0.00 45.69 2.27
3780 4448 9.427821 AGGAGAAAGATTAGAAGAGCATAACTA 57.572 33.333 0.00 0.00 0.00 2.24
3816 4484 2.099592 TGCACAACTGAGGCAAGAAAAG 59.900 45.455 0.00 0.00 34.05 2.27
3851 4519 8.298729 ACTACATCTCTTGATATTGACAGTGA 57.701 34.615 0.00 0.00 0.00 3.41
3852 4520 8.939201 AACTACATCTCTTGATATTGACAGTG 57.061 34.615 0.00 0.00 0.00 3.66
3853 4521 8.200792 GGAACTACATCTCTTGATATTGACAGT 58.799 37.037 0.00 0.00 0.00 3.55
4056 4724 4.698201 TTGTGTACATGAGTGGGAGAAA 57.302 40.909 0.00 0.00 0.00 2.52
4209 5181 2.111384 GATTCAGCAGTACTCCCTCCA 58.889 52.381 0.00 0.00 0.00 3.86
4236 5208 5.434408 ACTGCTGCATCTTTATGAGATCAA 58.566 37.500 1.31 0.00 43.32 2.57
4343 5316 8.628882 AAACTTGGTCGACTTTTTAAAATGAG 57.371 30.769 16.46 8.98 0.00 2.90
4490 5468 5.913137 TCCCAAAATATGTCATGTTGGTC 57.087 39.130 17.10 0.00 37.60 4.02
4544 5522 7.168637 GCAAAATGATGTAATCTGCTAATGGTG 59.831 37.037 0.00 0.00 45.81 4.17
4546 5524 7.168637 GTGCAAAATGATGTAATCTGCTAATGG 59.831 37.037 0.00 0.00 45.81 3.16
4547 5525 7.168637 GGTGCAAAATGATGTAATCTGCTAATG 59.831 37.037 0.00 0.00 45.81 1.90
4548 5526 7.205297 GGTGCAAAATGATGTAATCTGCTAAT 58.795 34.615 0.00 0.00 45.81 1.73
4550 5528 5.220835 CGGTGCAAAATGATGTAATCTGCTA 60.221 40.000 0.00 0.00 45.81 3.49
4552 5530 3.792956 CGGTGCAAAATGATGTAATCTGC 59.207 43.478 0.00 0.00 45.81 4.26
4553 5531 5.233957 TCGGTGCAAAATGATGTAATCTG 57.766 39.130 0.00 0.00 45.81 2.90
4554 5532 6.455360 AATCGGTGCAAAATGATGTAATCT 57.545 33.333 0.00 0.00 45.81 2.40
4557 5535 9.061435 TGATATAATCGGTGCAAAATGATGTAA 57.939 29.630 0.00 0.00 0.00 2.41
4558 5536 8.614469 TGATATAATCGGTGCAAAATGATGTA 57.386 30.769 0.00 0.00 0.00 2.29
4559 5537 7.509141 TGATATAATCGGTGCAAAATGATGT 57.491 32.000 0.00 0.00 0.00 3.06
4560 5538 8.456471 AGATGATATAATCGGTGCAAAATGATG 58.544 33.333 0.00 0.00 0.00 3.07
4561 5539 8.571461 AGATGATATAATCGGTGCAAAATGAT 57.429 30.769 0.00 0.00 0.00 2.45
4562 5540 7.984422 AGATGATATAATCGGTGCAAAATGA 57.016 32.000 0.00 0.00 0.00 2.57
4741 5721 6.763135 GCTAAGATTATGTGAACTGACATGGA 59.237 38.462 0.00 0.00 37.16 3.41
5040 6029 4.150804 GCCGAAGTTCAGTCTCTTAACTTG 59.849 45.833 11.94 6.49 42.06 3.16
5109 6114 3.070159 AGGTTGGACGATATGACTCCATG 59.930 47.826 0.00 0.00 33.99 3.66
5120 6125 2.494073 GAGAAGACTCAGGTTGGACGAT 59.506 50.000 0.00 0.00 42.21 3.73
5198 6206 0.882042 AGCTCCAACACAACAGCTCG 60.882 55.000 0.00 0.00 37.72 5.03
5324 6332 8.566260 GCTTAATGCAAAGAGATATTCTGACAT 58.434 33.333 2.23 0.00 42.31 3.06
5326 6334 8.152309 AGCTTAATGCAAAGAGATATTCTGAC 57.848 34.615 2.23 0.00 45.94 3.51
5419 6438 2.014128 ACGGAGTTTCCAACACTTGTG 58.986 47.619 0.00 0.00 37.78 3.33
5426 6445 2.093341 TGGGCTATACGGAGTTTCCAAC 60.093 50.000 0.00 0.00 37.78 3.77
5427 6446 2.093341 GTGGGCTATACGGAGTTTCCAA 60.093 50.000 0.00 0.00 37.78 3.53
5428 6447 1.483415 GTGGGCTATACGGAGTTTCCA 59.517 52.381 0.00 0.00 37.78 3.53
5429 6448 1.483415 TGTGGGCTATACGGAGTTTCC 59.517 52.381 0.00 0.00 37.78 3.13
5432 6451 2.154567 TCTGTGGGCTATACGGAGTT 57.845 50.000 0.00 0.00 37.78 3.01
5434 6453 1.337260 GCATCTGTGGGCTATACGGAG 60.337 57.143 0.00 0.00 36.91 4.63
5436 6455 0.320771 GGCATCTGTGGGCTATACGG 60.321 60.000 0.00 0.00 0.00 4.02
5437 6456 0.392706 TGGCATCTGTGGGCTATACG 59.607 55.000 0.00 0.00 0.00 3.06
5439 6458 3.882102 ATTTGGCATCTGTGGGCTATA 57.118 42.857 0.00 0.00 0.00 1.31
5440 6459 2.761786 ATTTGGCATCTGTGGGCTAT 57.238 45.000 0.00 0.00 0.00 2.97
5441 6460 3.138098 TGATATTTGGCATCTGTGGGCTA 59.862 43.478 0.00 0.00 0.00 3.93
5443 6462 2.295349 CTGATATTTGGCATCTGTGGGC 59.705 50.000 0.00 0.00 0.00 5.36
5444 6463 3.567164 GTCTGATATTTGGCATCTGTGGG 59.433 47.826 0.00 0.00 0.00 4.61
5446 6465 3.303593 GCGTCTGATATTTGGCATCTGTG 60.304 47.826 0.00 0.00 0.00 3.66
5447 6466 2.874701 GCGTCTGATATTTGGCATCTGT 59.125 45.455 0.00 0.00 0.00 3.41
5448 6467 2.874086 TGCGTCTGATATTTGGCATCTG 59.126 45.455 0.00 0.00 0.00 2.90
5449 6468 3.198409 TGCGTCTGATATTTGGCATCT 57.802 42.857 0.00 0.00 0.00 2.90
5450 6469 4.692625 ACTATGCGTCTGATATTTGGCATC 59.307 41.667 0.00 0.00 41.03 3.91
5462 6498 3.702330 TGATTTCGGTACTATGCGTCTG 58.298 45.455 0.00 0.00 0.00 3.51
5511 6547 4.643795 TGCCCTAATGCAGTCTGC 57.356 55.556 18.32 18.32 45.29 4.26
5517 6553 4.235079 ACTATTGAACTGCCCTAATGCA 57.765 40.909 0.00 0.00 39.37 3.96
5518 6554 6.234177 AGATACTATTGAACTGCCCTAATGC 58.766 40.000 0.00 0.00 0.00 3.56
5519 6555 7.445121 TGAGATACTATTGAACTGCCCTAATG 58.555 38.462 0.00 0.00 0.00 1.90
5520 6556 7.618019 TGAGATACTATTGAACTGCCCTAAT 57.382 36.000 0.00 0.00 0.00 1.73
5522 6558 7.432148 TTTGAGATACTATTGAACTGCCCTA 57.568 36.000 0.00 0.00 0.00 3.53
5523 6559 5.957771 TTGAGATACTATTGAACTGCCCT 57.042 39.130 0.00 0.00 0.00 5.19
5537 6578 4.708177 TCTAGCAAGGGCATTTGAGATAC 58.292 43.478 5.31 0.00 44.61 2.24
5538 6579 5.372343 TTCTAGCAAGGGCATTTGAGATA 57.628 39.130 5.31 0.00 44.61 1.98
5541 6582 5.766670 TGATATTCTAGCAAGGGCATTTGAG 59.233 40.000 5.31 0.00 44.61 3.02
5624 6713 4.668636 AGGGTCCAGAGATATAGTAGCAC 58.331 47.826 0.00 0.00 0.00 4.40
5638 6740 3.637229 AGTACACGATAATGAGGGTCCAG 59.363 47.826 0.00 0.00 0.00 3.86
5662 6764 7.035840 AGCCAGTTTCATCAAATATTAGCAG 57.964 36.000 0.00 0.00 0.00 4.24
5663 6765 6.602803 TGAGCCAGTTTCATCAAATATTAGCA 59.397 34.615 0.00 0.00 0.00 3.49
5664 6766 7.031226 TGAGCCAGTTTCATCAAATATTAGC 57.969 36.000 0.00 0.00 0.00 3.09
5665 6767 9.859427 TTTTGAGCCAGTTTCATCAAATATTAG 57.141 29.630 0.56 0.00 40.32 1.73
5666 6768 9.638239 GTTTTGAGCCAGTTTCATCAAATATTA 57.362 29.630 0.56 0.00 40.32 0.98
5667 6769 8.370182 AGTTTTGAGCCAGTTTCATCAAATATT 58.630 29.630 0.56 0.00 40.32 1.28
5686 6788 5.850557 TCCAAAGCTTGATTGAGTTTTGA 57.149 34.783 13.42 1.18 45.20 2.69
5703 6805 9.613428 CTCTATATATGTTGTTCAGGTTCCAAA 57.387 33.333 0.00 0.00 0.00 3.28
5723 6826 7.174080 CGACCTGTTGATCTCTGATTCTCTATA 59.826 40.741 0.00 0.00 0.00 1.31
5725 6828 5.298026 CGACCTGTTGATCTCTGATTCTCTA 59.702 44.000 0.00 0.00 0.00 2.43
5732 6869 1.067565 GTGCGACCTGTTGATCTCTGA 60.068 52.381 0.00 0.00 0.00 3.27
5738 6875 0.037326 ACATCGTGCGACCTGTTGAT 60.037 50.000 0.00 0.00 0.00 2.57
5753 6909 0.391130 TGCGGCTGTGGAAGTACATC 60.391 55.000 0.00 0.00 0.00 3.06
5774 6930 5.334802 CGCTTTGTGACATTTAATCTGTCCA 60.335 40.000 13.29 9.42 41.87 4.02
5775 6931 5.088739 CGCTTTGTGACATTTAATCTGTCC 58.911 41.667 13.29 7.65 41.87 4.02
5776 6932 5.927030 TCGCTTTGTGACATTTAATCTGTC 58.073 37.500 10.33 10.33 42.68 3.51
5777 6933 5.940192 TCGCTTTGTGACATTTAATCTGT 57.060 34.783 0.00 0.00 0.00 3.41
5778 6934 6.142139 TGTTCGCTTTGTGACATTTAATCTG 58.858 36.000 0.00 0.00 0.00 2.90
5780 6936 6.582295 ACATGTTCGCTTTGTGACATTTAATC 59.418 34.615 0.00 0.00 0.00 1.75
5782 6938 5.826586 ACATGTTCGCTTTGTGACATTTAA 58.173 33.333 0.00 0.00 0.00 1.52
5783 6939 5.431420 ACATGTTCGCTTTGTGACATTTA 57.569 34.783 0.00 0.00 0.00 1.40
5793 6955 4.576463 GGATGGAAGATACATGTTCGCTTT 59.424 41.667 2.30 0.00 31.43 3.51
5798 6960 4.712476 AGCAGGATGGAAGATACATGTTC 58.288 43.478 2.30 1.60 35.86 3.18
5807 6969 4.964897 TGAGATAAAGAGCAGGATGGAAGA 59.035 41.667 0.00 0.00 35.86 2.87
5808 6970 5.287674 TGAGATAAAGAGCAGGATGGAAG 57.712 43.478 0.00 0.00 35.86 3.46
5809 6971 5.190528 ACTTGAGATAAAGAGCAGGATGGAA 59.809 40.000 0.00 0.00 35.86 3.53
5811 6973 5.033589 ACTTGAGATAAAGAGCAGGATGG 57.966 43.478 0.00 0.00 35.86 3.51
5813 6975 6.685116 GCACTACTTGAGATAAAGAGCAGGAT 60.685 42.308 0.00 0.00 0.00 3.24
5814 6976 5.394663 GCACTACTTGAGATAAAGAGCAGGA 60.395 44.000 0.00 0.00 0.00 3.86
5815 6977 4.808364 GCACTACTTGAGATAAAGAGCAGG 59.192 45.833 0.00 0.00 0.00 4.85
5823 6993 6.888105 TGATTCATGGCACTACTTGAGATAA 58.112 36.000 0.00 0.00 0.00 1.75
5830 7000 4.337555 GCTTCATGATTCATGGCACTACTT 59.662 41.667 23.07 0.00 41.66 2.24
5836 7006 1.026584 CGGCTTCATGATTCATGGCA 58.973 50.000 23.07 11.62 41.66 4.92
5848 7018 2.124507 CTTGAGGAACCCCGGCTTCA 62.125 60.000 11.14 0.70 37.58 3.02
5853 7023 4.716003 GTTCTTGAGGAACCCCGG 57.284 61.111 0.00 0.00 46.17 5.73
5861 7031 1.597854 TGCTGCCGTGTTCTTGAGG 60.598 57.895 0.00 0.00 0.00 3.86
5863 7033 1.891919 GGTGCTGCCGTGTTCTTGA 60.892 57.895 0.00 0.00 0.00 3.02
5864 7034 2.639286 GGTGCTGCCGTGTTCTTG 59.361 61.111 0.00 0.00 0.00 3.02
5876 7048 1.825090 TCAATGATTCTTGCGGTGCT 58.175 45.000 0.00 0.00 0.00 4.40
5879 7051 6.349300 ACTACTATTCAATGATTCTTGCGGT 58.651 36.000 0.00 0.00 0.00 5.68
5901 7073 5.702209 GCGCCTCTCTTCTTATAGTACTACT 59.298 44.000 4.31 0.00 0.00 2.57
5902 7074 5.469421 TGCGCCTCTCTTCTTATAGTACTAC 59.531 44.000 4.18 0.00 0.00 2.73
5903 7075 5.469421 GTGCGCCTCTCTTCTTATAGTACTA 59.531 44.000 4.18 4.77 0.00 1.82
5904 7076 4.276431 GTGCGCCTCTCTTCTTATAGTACT 59.724 45.833 4.18 0.00 0.00 2.73
5905 7077 4.538917 GTGCGCCTCTCTTCTTATAGTAC 58.461 47.826 4.18 0.00 0.00 2.73
5907 7079 2.362717 GGTGCGCCTCTCTTCTTATAGT 59.637 50.000 9.68 0.00 0.00 2.12
5908 7080 2.625790 AGGTGCGCCTCTCTTCTTATAG 59.374 50.000 14.67 0.00 42.67 1.31
5911 7083 0.532573 CAGGTGCGCCTCTCTTCTTA 59.467 55.000 18.11 0.00 44.97 2.10
5912 7084 1.294780 CAGGTGCGCCTCTCTTCTT 59.705 57.895 18.11 0.00 44.97 2.52
5913 7085 2.654079 CCAGGTGCGCCTCTCTTCT 61.654 63.158 18.11 0.00 44.97 2.85
5914 7086 2.125350 CCAGGTGCGCCTCTCTTC 60.125 66.667 18.11 0.00 44.97 2.87
6075 7247 0.037326 CCGCCTCAACAGCTACTTCA 60.037 55.000 0.00 0.00 0.00 3.02
6084 7256 4.680237 CCAGCGTCCGCCTCAACA 62.680 66.667 8.23 0.00 43.17 3.33
6249 7421 3.539604 AGCATCCAAGAAGAATCGAAGG 58.460 45.455 0.00 0.00 0.00 3.46
6273 7445 1.354155 CGATCGTACCAGCTGCGTA 59.646 57.895 8.66 9.51 0.00 4.42
6274 7446 2.102357 CGATCGTACCAGCTGCGT 59.898 61.111 8.66 10.58 0.00 5.24
6275 7447 2.655364 CCGATCGTACCAGCTGCG 60.655 66.667 15.09 7.07 0.00 5.18
6276 7448 2.279517 CCCGATCGTACCAGCTGC 60.280 66.667 15.09 0.00 0.00 5.25
6297 7476 0.319641 GTTCGCCGTTGTTCCTCTCT 60.320 55.000 0.00 0.00 0.00 3.10
6309 7488 2.954753 GCAACCAGAGTGTTCGCCG 61.955 63.158 0.00 0.00 0.00 6.46
6372 7551 1.808411 GGCGACACTTCCAGAAATCA 58.192 50.000 0.00 0.00 0.00 2.57
6471 7678 2.735772 GCCAAGATGAGAGCGGGGA 61.736 63.158 0.00 0.00 0.00 4.81
6486 7693 4.041567 CCTATGTGTGAGTATAATGGGCCA 59.958 45.833 9.61 9.61 0.00 5.36
6519 7726 1.133407 GTGTGAGTTCACCCGCAAAAA 59.867 47.619 9.60 0.00 45.88 1.94
6520 7727 0.736053 GTGTGAGTTCACCCGCAAAA 59.264 50.000 9.60 0.00 45.88 2.44
6521 7728 0.393132 TGTGTGAGTTCACCCGCAAA 60.393 50.000 9.60 0.00 45.88 3.68
6522 7729 0.179032 ATGTGTGAGTTCACCCGCAA 60.179 50.000 9.60 0.00 45.88 4.85
6523 7730 0.682292 TATGTGTGAGTTCACCCGCA 59.318 50.000 9.60 6.74 45.88 5.69
6524 7731 1.076332 GTATGTGTGAGTTCACCCGC 58.924 55.000 9.60 1.71 45.88 6.13
6525 7732 2.743636 AGTATGTGTGAGTTCACCCG 57.256 50.000 9.60 0.00 45.88 5.28
6526 7733 5.163754 GCATTAAGTATGTGTGAGTTCACCC 60.164 44.000 9.60 0.00 39.10 4.61
6527 7734 5.411361 TGCATTAAGTATGTGTGAGTTCACC 59.589 40.000 9.60 2.54 39.10 4.02
6528 7735 6.480524 TGCATTAAGTATGTGTGAGTTCAC 57.519 37.500 5.33 5.33 39.68 3.18
6529 7736 7.503521 TTTGCATTAAGTATGTGTGAGTTCA 57.496 32.000 0.00 0.00 36.57 3.18
6567 7774 8.987890 AGCGTTCAATATTTGCATTAAGTTTTT 58.012 25.926 0.00 0.00 0.00 1.94
6568 7775 8.532977 AGCGTTCAATATTTGCATTAAGTTTT 57.467 26.923 0.00 0.00 0.00 2.43
6569 7776 8.532977 AAGCGTTCAATATTTGCATTAAGTTT 57.467 26.923 0.00 0.00 0.00 2.66
6570 7777 8.532977 AAAGCGTTCAATATTTGCATTAAGTT 57.467 26.923 0.00 0.00 0.00 2.66
6571 7778 8.028938 AGAAAGCGTTCAATATTTGCATTAAGT 58.971 29.630 14.88 0.00 36.09 2.24
6572 7779 8.398491 AGAAAGCGTTCAATATTTGCATTAAG 57.602 30.769 14.88 0.00 36.09 1.85
6573 7780 9.847706 TTAGAAAGCGTTCAATATTTGCATTAA 57.152 25.926 14.88 0.00 36.09 1.40
6574 7781 9.847706 TTTAGAAAGCGTTCAATATTTGCATTA 57.152 25.926 14.88 0.00 36.09 1.90
6575 7782 8.755696 TTTAGAAAGCGTTCAATATTTGCATT 57.244 26.923 14.88 0.00 36.09 3.56
6576 7783 8.931385 ATTTAGAAAGCGTTCAATATTTGCAT 57.069 26.923 14.88 0.00 36.09 3.96
6639 9233 4.581493 CTGTTCACGCACATATAAAGCTG 58.419 43.478 0.00 0.00 0.00 4.24
6644 9238 6.045955 TCAATAGCTGTTCACGCACATATAA 58.954 36.000 0.00 0.00 0.00 0.98
6752 9364 1.982612 CGAGCTTTAAGCCCTTTTGC 58.017 50.000 13.84 0.00 43.77 3.68
6753 9365 1.541588 AGCGAGCTTTAAGCCCTTTTG 59.458 47.619 13.84 0.12 43.77 2.44
6760 9545 1.226239 GCTGCAGCGAGCTTTAAGC 60.226 57.895 25.23 9.18 45.94 3.09
6826 9611 7.493320 ACATCAGCGATTCGGTTTATAACTTAA 59.507 33.333 8.24 0.00 34.62 1.85
6870 9693 3.105659 GCCAAAGCCTGATCGAGC 58.894 61.111 0.00 0.00 0.00 5.03
6897 9720 2.735663 AGAGAGACCGCGTACGTATATG 59.264 50.000 17.90 3.80 37.70 1.78
6921 9744 3.626930 AGGAAGCGTTCTCTACATCTCT 58.373 45.455 0.00 0.00 0.00 3.10
6925 9748 6.049790 GGATTTTAGGAAGCGTTCTCTACAT 58.950 40.000 0.00 0.00 0.00 2.29
6926 9749 5.187186 AGGATTTTAGGAAGCGTTCTCTACA 59.813 40.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.