Multiple sequence alignment - TraesCS3B01G460900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G460900 chr3B 100.000 3639 0 0 1 3639 704263719 704260081 0.000000e+00 6721.0
1 TraesCS3B01G460900 chr3B 100.000 31 0 0 3339 3369 68902733 68902703 1.410000e-04 58.4
2 TraesCS3B01G460900 chr3D 95.763 2077 74 5 833 2899 532125856 532123784 0.000000e+00 3336.0
3 TraesCS3B01G460900 chr3D 92.385 499 33 3 351 846 532128554 532128058 0.000000e+00 706.0
4 TraesCS3B01G460900 chr3D 90.331 362 34 1 3023 3384 532123573 532123213 1.180000e-129 473.0
5 TraesCS3B01G460900 chr3D 89.014 355 33 5 7 358 433305957 433305606 5.580000e-118 435.0
6 TraesCS3B01G460900 chr3D 94.574 129 7 0 2910 3038 532123748 532123620 2.220000e-47 200.0
7 TraesCS3B01G460900 chr3A 93.216 2152 111 13 640 2785 667308340 667306218 0.000000e+00 3133.0
8 TraesCS3B01G460900 chr3A 88.522 758 55 12 2777 3522 667296872 667296135 0.000000e+00 889.0
9 TraesCS3B01G460900 chr3A 90.722 97 9 0 3543 3639 667296028 667295932 2.950000e-26 130.0
10 TraesCS3B01G460900 chr4D 85.138 1736 200 35 1001 2696 448395032 448393315 0.000000e+00 1724.0
11 TraesCS3B01G460900 chr2A 77.256 1640 322 34 994 2599 678994556 678996178 0.000000e+00 915.0
12 TraesCS3B01G460900 chr2A 78.178 944 169 31 1000 1929 684915848 684914928 5.270000e-158 568.0
13 TraesCS3B01G460900 chr2A 78.514 740 150 9 1038 1773 34157556 34156822 9.140000e-131 477.0
14 TraesCS3B01G460900 chr2A 77.442 563 124 2 2004 2566 678677752 678677193 2.090000e-87 333.0
15 TraesCS3B01G460900 chr2A 95.000 40 0 2 587 626 22019270 22019307 1.090000e-05 62.1
16 TraesCS3B01G460900 chr5B 93.623 345 19 3 6 348 672583037 672582694 2.510000e-141 512.0
17 TraesCS3B01G460900 chr5B 90.625 352 28 4 1 348 206790976 206790626 2.560000e-126 462.0
18 TraesCS3B01G460900 chr5B 89.459 351 33 3 1 348 458688787 458689136 1.200000e-119 440.0
19 TraesCS3B01G460900 chr5B 76.615 449 72 19 2981 3423 224325537 224325116 2.200000e-52 217.0
20 TraesCS3B01G460900 chr5B 95.122 41 0 2 587 627 290747807 290747769 3.030000e-06 63.9
21 TraesCS3B01G460900 chrUn 91.014 345 29 1 1 343 39248576 39248920 7.120000e-127 464.0
22 TraesCS3B01G460900 chrUn 76.339 672 142 15 1104 1765 12449706 12450370 9.670000e-91 344.0
23 TraesCS3B01G460900 chr1B 91.040 346 27 3 6 348 623720200 623720544 7.120000e-127 464.0
24 TraesCS3B01G460900 chr1B 95.000 40 2 0 589 628 325287088 325287049 3.030000e-06 63.9
25 TraesCS3B01G460900 chr1B 92.683 41 2 1 592 632 10007846 10007807 1.410000e-04 58.4
26 TraesCS3B01G460900 chr7D 89.855 345 32 2 6 348 45127102 45126759 1.200000e-119 440.0
27 TraesCS3B01G460900 chr5D 89.744 351 27 7 7 351 23279700 23279353 1.200000e-119 440.0
28 TraesCS3B01G460900 chr5D 97.222 36 1 0 593 628 255941230 255941265 1.090000e-05 62.1
29 TraesCS3B01G460900 chr2D 89.625 347 32 4 6 351 615976808 615976465 4.310000e-119 438.0
30 TraesCS3B01G460900 chr2D 79.700 601 122 0 1999 2599 536480833 536481433 5.580000e-118 435.0
31 TraesCS3B01G460900 chr2D 78.546 564 116 4 2004 2566 535581112 535580553 2.060000e-97 366.0
32 TraesCS3B01G460900 chr2D 76.042 672 144 15 1104 1765 12324649 12323985 2.090000e-87 333.0
33 TraesCS3B01G460900 chr2D 92.857 42 3 0 586 627 336505891 336505932 1.090000e-05 62.1
34 TraesCS3B01G460900 chr2B 77.482 564 122 4 2004 2566 636821770 636821211 2.090000e-87 333.0
35 TraesCS3B01G460900 chr2B 76.962 599 129 8 2004 2599 638752977 638753569 2.090000e-87 333.0
36 TraesCS3B01G460900 chr2B 79.535 215 41 1 1000 1211 647004080 647003866 2.260000e-32 150.0
37 TraesCS3B01G460900 chr1D 75.000 324 63 14 3113 3424 54851537 54851220 2.280000e-27 134.0
38 TraesCS3B01G460900 chr1D 86.842 76 10 0 3334 3409 211507496 211507571 6.470000e-13 86.1
39 TraesCS3B01G460900 chr5A 74.178 426 52 29 2970 3390 272950526 272950154 1.370000e-24 124.0
40 TraesCS3B01G460900 chr7B 97.222 36 1 0 593 628 707816812 707816777 1.090000e-05 62.1
41 TraesCS3B01G460900 chr4A 95.000 40 1 1 589 628 722799645 722799683 1.090000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G460900 chr3B 704260081 704263719 3638 True 6721.00 6721 100.00000 1 3639 1 chr3B.!!$R2 3638
1 TraesCS3B01G460900 chr3D 532123213 532128554 5341 True 1178.75 3336 93.26325 351 3384 4 chr3D.!!$R2 3033
2 TraesCS3B01G460900 chr3A 667306218 667308340 2122 True 3133.00 3133 93.21600 640 2785 1 chr3A.!!$R1 2145
3 TraesCS3B01G460900 chr3A 667295932 667296872 940 True 509.50 889 89.62200 2777 3639 2 chr3A.!!$R2 862
4 TraesCS3B01G460900 chr4D 448393315 448395032 1717 True 1724.00 1724 85.13800 1001 2696 1 chr4D.!!$R1 1695
5 TraesCS3B01G460900 chr2A 678994556 678996178 1622 False 915.00 915 77.25600 994 2599 1 chr2A.!!$F2 1605
6 TraesCS3B01G460900 chr2A 684914928 684915848 920 True 568.00 568 78.17800 1000 1929 1 chr2A.!!$R3 929
7 TraesCS3B01G460900 chr2A 34156822 34157556 734 True 477.00 477 78.51400 1038 1773 1 chr2A.!!$R1 735
8 TraesCS3B01G460900 chr2A 678677193 678677752 559 True 333.00 333 77.44200 2004 2566 1 chr2A.!!$R2 562
9 TraesCS3B01G460900 chrUn 12449706 12450370 664 False 344.00 344 76.33900 1104 1765 1 chrUn.!!$F1 661
10 TraesCS3B01G460900 chr2D 536480833 536481433 600 False 435.00 435 79.70000 1999 2599 1 chr2D.!!$F2 600
11 TraesCS3B01G460900 chr2D 535580553 535581112 559 True 366.00 366 78.54600 2004 2566 1 chr2D.!!$R2 562
12 TraesCS3B01G460900 chr2D 12323985 12324649 664 True 333.00 333 76.04200 1104 1765 1 chr2D.!!$R1 661
13 TraesCS3B01G460900 chr2B 636821211 636821770 559 True 333.00 333 77.48200 2004 2566 1 chr2B.!!$R1 562
14 TraesCS3B01G460900 chr2B 638752977 638753569 592 False 333.00 333 76.96200 2004 2599 1 chr2B.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.038166 GTGTGGGCTGATCCTCCAAA 59.962 55.0 3.20 0.0 34.39 3.28 F
973 3194 0.249868 TCTTGCTGTTCGTCCACAGG 60.250 55.0 12.11 0.0 43.94 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1126 3372 0.250234 TGGAGAAGGTTGCCGATCAG 59.750 55.0 0.00 0.0 0.0 2.90 R
2907 5217 0.032130 GGAATACTCGCAGATCGCCA 59.968 55.0 4.37 0.0 37.3 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.466856 CCATACATGGCAACTGCAGT 58.533 50.000 15.25 15.25 41.75 4.40
20 21 1.820519 CCATACATGGCAACTGCAGTT 59.179 47.619 26.36 26.36 41.75 3.16
29 30 3.189568 AACTGCAGTTGAGCAACCA 57.810 47.368 30.66 1.68 45.13 3.67
30 31 1.696063 AACTGCAGTTGAGCAACCAT 58.304 45.000 30.66 2.58 45.13 3.55
31 32 0.956633 ACTGCAGTTGAGCAACCATG 59.043 50.000 15.25 4.34 45.13 3.66
32 33 0.242825 CTGCAGTTGAGCAACCATGG 59.757 55.000 11.19 11.19 45.13 3.66
33 34 1.080298 GCAGTTGAGCAACCATGGC 60.080 57.895 13.04 0.00 42.06 4.40
34 35 1.808531 GCAGTTGAGCAACCATGGCA 61.809 55.000 13.04 0.00 42.06 4.92
35 36 0.675083 CAGTTGAGCAACCATGGCAA 59.325 50.000 13.04 4.49 42.06 4.52
36 37 0.675633 AGTTGAGCAACCATGGCAAC 59.324 50.000 19.02 19.02 42.06 4.17
37 38 0.675633 GTTGAGCAACCATGGCAACT 59.324 50.000 19.25 11.63 36.73 3.16
38 39 0.675083 TTGAGCAACCATGGCAACTG 59.325 50.000 13.04 5.49 37.61 3.16
39 40 0.467844 TGAGCAACCATGGCAACTGT 60.468 50.000 13.04 0.00 37.61 3.55
40 41 1.202867 TGAGCAACCATGGCAACTGTA 60.203 47.619 13.04 0.00 37.61 2.74
41 42 1.470098 GAGCAACCATGGCAACTGTAG 59.530 52.381 13.04 0.00 37.61 2.74
42 43 1.202927 AGCAACCATGGCAACTGTAGT 60.203 47.619 13.04 0.00 37.61 2.73
43 44 1.613437 GCAACCATGGCAACTGTAGTT 59.387 47.619 13.04 0.00 39.12 2.24
54 55 2.743636 ACTGTAGTTGTCCGACATGG 57.256 50.000 1.09 0.00 40.09 3.66
55 56 1.337823 ACTGTAGTTGTCCGACATGGC 60.338 52.381 1.09 0.00 37.80 4.40
56 57 0.682292 TGTAGTTGTCCGACATGGCA 59.318 50.000 1.09 0.00 37.80 4.92
57 58 1.070914 TGTAGTTGTCCGACATGGCAA 59.929 47.619 1.09 0.00 37.80 4.52
58 59 1.463444 GTAGTTGTCCGACATGGCAAC 59.537 52.381 1.09 5.44 46.38 4.17
59 60 2.629002 GTTGTCCGACATGGCAACT 58.371 52.632 1.09 0.00 44.47 3.16
60 61 0.238289 GTTGTCCGACATGGCAACTG 59.762 55.000 1.09 0.00 44.47 3.16
61 62 1.514678 TTGTCCGACATGGCAACTGC 61.515 55.000 1.09 0.00 37.80 4.40
62 63 1.965930 GTCCGACATGGCAACTGCA 60.966 57.895 0.00 0.00 44.36 4.41
63 64 1.672030 TCCGACATGGCAACTGCAG 60.672 57.895 13.48 13.48 44.36 4.41
64 65 1.968017 CCGACATGGCAACTGCAGT 60.968 57.895 15.25 15.25 44.36 4.40
65 66 1.518056 CCGACATGGCAACTGCAGTT 61.518 55.000 26.36 26.36 44.36 3.16
66 67 1.155889 CGACATGGCAACTGCAGTTA 58.844 50.000 30.67 16.98 44.36 2.24
67 68 1.535028 CGACATGGCAACTGCAGTTAA 59.465 47.619 30.67 19.43 44.36 2.01
68 69 2.031245 CGACATGGCAACTGCAGTTAAA 60.031 45.455 30.67 19.09 44.36 1.52
69 70 3.366273 CGACATGGCAACTGCAGTTAAAT 60.366 43.478 30.67 20.35 44.36 1.40
70 71 3.916761 ACATGGCAACTGCAGTTAAATG 58.083 40.909 30.67 29.58 44.36 2.32
71 72 3.573538 ACATGGCAACTGCAGTTAAATGA 59.426 39.130 33.22 19.61 44.36 2.57
72 73 4.039004 ACATGGCAACTGCAGTTAAATGAA 59.961 37.500 33.22 19.65 44.36 2.57
73 74 3.976169 TGGCAACTGCAGTTAAATGAAC 58.024 40.909 30.67 15.85 44.36 3.18
74 75 3.382865 TGGCAACTGCAGTTAAATGAACA 59.617 39.130 30.67 17.97 44.36 3.18
75 76 4.142071 TGGCAACTGCAGTTAAATGAACAA 60.142 37.500 30.67 6.45 44.36 2.83
76 77 4.445385 GGCAACTGCAGTTAAATGAACAAG 59.555 41.667 30.67 15.56 44.36 3.16
77 78 4.445385 GCAACTGCAGTTAAATGAACAAGG 59.555 41.667 30.67 15.06 40.86 3.61
78 79 5.735922 GCAACTGCAGTTAAATGAACAAGGA 60.736 40.000 30.67 0.00 40.86 3.36
79 80 6.272318 CAACTGCAGTTAAATGAACAAGGAA 58.728 36.000 30.67 0.00 40.86 3.36
80 81 6.076981 ACTGCAGTTAAATGAACAAGGAAG 57.923 37.500 15.25 0.00 40.86 3.46
81 82 5.827797 ACTGCAGTTAAATGAACAAGGAAGA 59.172 36.000 15.25 0.00 40.86 2.87
82 83 6.016777 ACTGCAGTTAAATGAACAAGGAAGAG 60.017 38.462 15.25 0.00 40.86 2.85
83 84 5.241506 TGCAGTTAAATGAACAAGGAAGAGG 59.758 40.000 7.18 0.00 40.86 3.69
84 85 5.335976 GCAGTTAAATGAACAAGGAAGAGGG 60.336 44.000 7.18 0.00 40.86 4.30
85 86 5.770162 CAGTTAAATGAACAAGGAAGAGGGT 59.230 40.000 0.00 0.00 40.86 4.34
86 87 6.004574 AGTTAAATGAACAAGGAAGAGGGTC 58.995 40.000 0.00 0.00 40.86 4.46
87 88 3.441500 AATGAACAAGGAAGAGGGTCC 57.558 47.619 0.00 0.00 38.03 4.46
88 89 1.814429 TGAACAAGGAAGAGGGTCCA 58.186 50.000 0.00 0.00 40.48 4.02
89 90 1.699634 TGAACAAGGAAGAGGGTCCAG 59.300 52.381 0.00 0.00 40.48 3.86
90 91 1.978580 GAACAAGGAAGAGGGTCCAGA 59.021 52.381 0.00 0.00 40.48 3.86
91 92 1.353091 ACAAGGAAGAGGGTCCAGAC 58.647 55.000 0.00 0.00 40.48 3.51
103 104 4.828409 CCAGACCATGGCAACTGT 57.172 55.556 23.28 2.25 43.83 3.55
104 105 2.260247 CCAGACCATGGCAACTGTG 58.740 57.895 23.28 15.28 43.83 3.66
105 106 1.246056 CCAGACCATGGCAACTGTGG 61.246 60.000 23.28 14.76 43.83 4.17
106 107 1.075482 AGACCATGGCAACTGTGGG 59.925 57.895 13.04 0.00 44.26 4.61
107 108 1.978617 GACCATGGCAACTGTGGGG 60.979 63.158 13.04 0.00 44.26 4.96
108 109 2.424842 GACCATGGCAACTGTGGGGA 62.425 60.000 13.04 0.00 44.26 4.81
109 110 1.978617 CCATGGCAACTGTGGGGAC 60.979 63.158 0.00 0.00 38.77 4.46
110 111 2.034066 ATGGCAACTGTGGGGACG 59.966 61.111 0.00 0.00 37.61 4.79
111 112 4.947147 TGGCAACTGTGGGGACGC 62.947 66.667 0.00 0.00 42.66 5.19
112 113 4.643387 GGCAACTGTGGGGACGCT 62.643 66.667 0.00 0.00 42.82 5.07
113 114 3.357079 GCAACTGTGGGGACGCTG 61.357 66.667 0.00 0.00 44.41 5.18
114 115 2.669569 CAACTGTGGGGACGCTGG 60.670 66.667 0.00 0.00 43.29 4.85
115 116 3.168528 AACTGTGGGGACGCTGGT 61.169 61.111 0.00 0.00 43.29 4.00
116 117 3.476031 AACTGTGGGGACGCTGGTG 62.476 63.158 0.00 0.00 43.29 4.17
117 118 3.625897 CTGTGGGGACGCTGGTGA 61.626 66.667 0.00 0.00 42.82 4.02
118 119 3.883744 CTGTGGGGACGCTGGTGAC 62.884 68.421 0.00 0.00 42.82 3.67
119 120 3.626924 GTGGGGACGCTGGTGACT 61.627 66.667 0.00 0.00 38.02 3.41
120 121 3.625897 TGGGGACGCTGGTGACTG 61.626 66.667 0.00 0.00 0.00 3.51
121 122 3.626924 GGGGACGCTGGTGACTGT 61.627 66.667 0.00 0.00 0.00 3.55
122 123 2.048127 GGGACGCTGGTGACTGTC 60.048 66.667 0.00 0.00 0.00 3.51
123 124 2.734591 GGACGCTGGTGACTGTCA 59.265 61.111 6.36 6.36 33.04 3.58
124 125 1.664965 GGACGCTGGTGACTGTCAC 60.665 63.158 28.29 28.29 46.23 3.67
142 143 4.865761 GCGGCGTGCGAGACCATA 62.866 66.667 9.37 0.00 0.00 2.74
143 144 2.202690 CGGCGTGCGAGACCATAA 60.203 61.111 0.00 0.00 0.00 1.90
144 145 2.230940 CGGCGTGCGAGACCATAAG 61.231 63.158 0.00 0.00 0.00 1.73
145 146 1.883084 GGCGTGCGAGACCATAAGG 60.883 63.158 0.00 0.00 42.21 2.69
157 158 2.103153 CCATAAGGTAGGAGGCCTGA 57.897 55.000 12.00 0.00 36.30 3.86
158 159 1.694696 CCATAAGGTAGGAGGCCTGAC 59.305 57.143 12.00 5.04 36.30 3.51
159 160 1.341531 CATAAGGTAGGAGGCCTGACG 59.658 57.143 12.00 0.00 36.30 4.35
160 161 0.333993 TAAGGTAGGAGGCCTGACGT 59.666 55.000 12.00 3.95 36.30 4.34
161 162 0.333993 AAGGTAGGAGGCCTGACGTA 59.666 55.000 12.00 0.00 36.30 3.57
162 163 0.395448 AGGTAGGAGGCCTGACGTAC 60.395 60.000 12.00 12.93 34.61 3.67
163 164 1.722636 GGTAGGAGGCCTGACGTACG 61.723 65.000 12.00 15.01 34.61 3.67
164 165 1.452651 TAGGAGGCCTGACGTACGG 60.453 63.158 21.06 2.24 34.61 4.02
170 171 4.047059 CCTGACGTACGGGCGTGT 62.047 66.667 21.06 0.00 45.79 4.49
171 172 2.803670 CTGACGTACGGGCGTGTG 60.804 66.667 21.06 0.00 45.79 3.82
172 173 4.345962 TGACGTACGGGCGTGTGG 62.346 66.667 21.06 0.00 45.79 4.17
184 185 3.588277 CGTGTGGGCGCTATCTATT 57.412 52.632 7.64 0.00 0.00 1.73
185 186 1.865865 CGTGTGGGCGCTATCTATTT 58.134 50.000 7.64 0.00 0.00 1.40
186 187 2.210116 CGTGTGGGCGCTATCTATTTT 58.790 47.619 7.64 0.00 0.00 1.82
187 188 2.032894 CGTGTGGGCGCTATCTATTTTG 60.033 50.000 7.64 0.00 0.00 2.44
188 189 1.946768 TGTGGGCGCTATCTATTTTGC 59.053 47.619 7.64 0.00 0.00 3.68
189 190 1.266989 GTGGGCGCTATCTATTTTGCC 59.733 52.381 7.64 0.00 41.72 4.52
191 192 1.604604 GGCGCTATCTATTTTGCCCA 58.395 50.000 7.64 0.00 36.51 5.36
192 193 1.266989 GGCGCTATCTATTTTGCCCAC 59.733 52.381 7.64 0.00 36.51 4.61
193 194 1.946768 GCGCTATCTATTTTGCCCACA 59.053 47.619 0.00 0.00 0.00 4.17
194 195 2.287009 GCGCTATCTATTTTGCCCACAC 60.287 50.000 0.00 0.00 0.00 3.82
195 196 2.032894 CGCTATCTATTTTGCCCACACG 60.033 50.000 0.00 0.00 0.00 4.49
196 197 2.943033 GCTATCTATTTTGCCCACACGT 59.057 45.455 0.00 0.00 0.00 4.49
197 198 4.124238 GCTATCTATTTTGCCCACACGTA 58.876 43.478 0.00 0.00 0.00 3.57
198 199 4.211374 GCTATCTATTTTGCCCACACGTAG 59.789 45.833 0.00 0.00 0.00 3.51
199 200 2.980568 TCTATTTTGCCCACACGTAGG 58.019 47.619 0.00 0.00 0.00 3.18
207 208 2.225068 CCCACACGTAGGCATAAGAG 57.775 55.000 0.00 0.00 0.00 2.85
208 209 1.754803 CCCACACGTAGGCATAAGAGA 59.245 52.381 0.00 0.00 0.00 3.10
209 210 2.223829 CCCACACGTAGGCATAAGAGAG 60.224 54.545 0.00 0.00 0.00 3.20
210 211 2.688446 CCACACGTAGGCATAAGAGAGA 59.312 50.000 0.00 0.00 0.00 3.10
211 212 3.130516 CCACACGTAGGCATAAGAGAGAA 59.869 47.826 0.00 0.00 0.00 2.87
212 213 4.381612 CCACACGTAGGCATAAGAGAGAAA 60.382 45.833 0.00 0.00 0.00 2.52
213 214 5.352284 CACACGTAGGCATAAGAGAGAAAT 58.648 41.667 0.00 0.00 0.00 2.17
214 215 5.460419 CACACGTAGGCATAAGAGAGAAATC 59.540 44.000 0.00 0.00 0.00 2.17
215 216 4.677378 CACGTAGGCATAAGAGAGAAATCG 59.323 45.833 0.00 0.00 0.00 3.34
216 217 3.670991 CGTAGGCATAAGAGAGAAATCGC 59.329 47.826 0.00 0.00 0.00 4.58
217 218 2.748605 AGGCATAAGAGAGAAATCGCG 58.251 47.619 0.00 0.00 0.00 5.87
218 219 2.362397 AGGCATAAGAGAGAAATCGCGA 59.638 45.455 13.09 13.09 0.00 5.87
219 220 2.728839 GGCATAAGAGAGAAATCGCGAG 59.271 50.000 16.66 0.00 0.00 5.03
240 241 3.670377 AAAAAGAGGCGCGTGGGC 61.670 61.111 7.63 0.00 42.69 5.36
241 242 4.947147 AAAAGAGGCGCGTGGGCA 62.947 61.111 7.63 0.00 45.36 5.36
242 243 4.722700 AAAGAGGCGCGTGGGCAT 62.723 61.111 7.63 3.17 45.36 4.40
243 244 4.722700 AAGAGGCGCGTGGGCATT 62.723 61.111 7.63 0.00 45.36 3.56
244 245 2.813226 AAAGAGGCGCGTGGGCATTA 62.813 55.000 7.63 0.00 45.36 1.90
245 246 3.573491 GAGGCGCGTGGGCATTAC 61.573 66.667 7.63 0.00 45.36 1.89
246 247 4.096003 AGGCGCGTGGGCATTACT 62.096 61.111 8.43 0.00 45.36 2.24
247 248 3.131478 GGCGCGTGGGCATTACTT 61.131 61.111 8.43 0.00 41.77 2.24
248 249 2.100216 GCGCGTGGGCATTACTTG 59.900 61.111 8.43 0.00 39.92 3.16
249 250 2.686816 GCGCGTGGGCATTACTTGT 61.687 57.895 8.43 0.00 39.92 3.16
250 251 1.873165 CGCGTGGGCATTACTTGTT 59.127 52.632 0.00 0.00 39.92 2.83
251 252 0.239879 CGCGTGGGCATTACTTGTTT 59.760 50.000 0.00 0.00 39.92 2.83
252 253 1.335506 CGCGTGGGCATTACTTGTTTT 60.336 47.619 0.00 0.00 39.92 2.43
253 254 2.058057 GCGTGGGCATTACTTGTTTTG 58.942 47.619 0.00 0.00 39.62 2.44
254 255 2.544903 GCGTGGGCATTACTTGTTTTGT 60.545 45.455 0.00 0.00 39.62 2.83
255 256 3.305110 CGTGGGCATTACTTGTTTTGTC 58.695 45.455 0.00 0.00 0.00 3.18
256 257 3.649073 GTGGGCATTACTTGTTTTGTCC 58.351 45.455 0.00 0.00 34.40 4.02
257 258 3.068873 GTGGGCATTACTTGTTTTGTCCA 59.931 43.478 5.30 5.30 41.34 4.02
258 259 3.068873 TGGGCATTACTTGTTTTGTCCAC 59.931 43.478 5.30 0.00 38.86 4.02
259 260 3.068873 GGGCATTACTTGTTTTGTCCACA 59.931 43.478 0.00 0.00 33.99 4.17
260 261 4.048504 GGCATTACTTGTTTTGTCCACAC 58.951 43.478 0.00 0.00 0.00 3.82
261 262 3.728718 GCATTACTTGTTTTGTCCACACG 59.271 43.478 0.00 0.00 0.00 4.49
262 263 4.732355 GCATTACTTGTTTTGTCCACACGT 60.732 41.667 0.00 0.00 31.97 4.49
263 264 5.504337 GCATTACTTGTTTTGTCCACACGTA 60.504 40.000 0.00 0.00 30.02 3.57
264 265 5.721876 TTACTTGTTTTGTCCACACGTAG 57.278 39.130 0.00 0.00 32.34 3.51
265 266 2.940410 ACTTGTTTTGTCCACACGTAGG 59.060 45.455 0.00 0.00 0.00 3.18
266 267 1.301423 TGTTTTGTCCACACGTAGGC 58.699 50.000 1.45 0.00 0.00 3.93
267 268 0.233848 GTTTTGTCCACACGTAGGCG 59.766 55.000 1.45 0.00 44.93 5.52
281 282 4.101448 GGCGTGTGGGCTGATCCT 62.101 66.667 0.00 0.00 38.40 3.24
282 283 2.512515 GCGTGTGGGCTGATCCTC 60.513 66.667 0.00 0.00 34.39 3.71
283 284 2.187946 CGTGTGGGCTGATCCTCC 59.812 66.667 0.00 0.00 34.39 4.30
284 285 2.659063 CGTGTGGGCTGATCCTCCA 61.659 63.158 3.20 0.00 34.39 3.86
285 286 1.685224 GTGTGGGCTGATCCTCCAA 59.315 57.895 3.20 0.00 34.39 3.53
286 287 0.038166 GTGTGGGCTGATCCTCCAAA 59.962 55.000 3.20 0.00 34.39 3.28
287 288 0.776810 TGTGGGCTGATCCTCCAAAA 59.223 50.000 3.20 0.00 34.39 2.44
288 289 1.177401 GTGGGCTGATCCTCCAAAAC 58.823 55.000 3.20 0.00 34.39 2.43
289 290 0.776810 TGGGCTGATCCTCCAAAACA 59.223 50.000 3.20 0.00 34.39 2.83
290 291 1.177401 GGGCTGATCCTCCAAAACAC 58.823 55.000 3.20 0.00 34.39 3.32
291 292 1.177401 GGCTGATCCTCCAAAACACC 58.823 55.000 0.00 0.00 0.00 4.16
292 293 1.547675 GGCTGATCCTCCAAAACACCA 60.548 52.381 0.00 0.00 0.00 4.17
293 294 1.541588 GCTGATCCTCCAAAACACCAC 59.458 52.381 0.00 0.00 0.00 4.16
294 295 2.862541 CTGATCCTCCAAAACACCACA 58.137 47.619 0.00 0.00 0.00 4.17
295 296 2.554032 CTGATCCTCCAAAACACCACAC 59.446 50.000 0.00 0.00 0.00 3.82
296 297 2.092158 TGATCCTCCAAAACACCACACA 60.092 45.455 0.00 0.00 0.00 3.72
297 298 2.516227 TCCTCCAAAACACCACACAA 57.484 45.000 0.00 0.00 0.00 3.33
298 299 2.808919 TCCTCCAAAACACCACACAAA 58.191 42.857 0.00 0.00 0.00 2.83
299 300 3.165875 TCCTCCAAAACACCACACAAAA 58.834 40.909 0.00 0.00 0.00 2.44
300 301 3.772025 TCCTCCAAAACACCACACAAAAT 59.228 39.130 0.00 0.00 0.00 1.82
301 302 3.870419 CCTCCAAAACACCACACAAAATG 59.130 43.478 0.00 0.00 0.00 2.32
302 303 4.502962 CTCCAAAACACCACACAAAATGT 58.497 39.130 0.00 0.00 44.81 2.71
313 314 1.039856 ACAAAATGTGTGGGCAGACC 58.960 50.000 0.00 0.00 39.72 3.85
323 324 2.437895 GGCAGACCCCTTAACGCC 60.438 66.667 0.00 0.00 0.00 5.68
324 325 2.669240 GCAGACCCCTTAACGCCT 59.331 61.111 0.00 0.00 0.00 5.52
325 326 1.619807 GGCAGACCCCTTAACGCCTA 61.620 60.000 0.00 0.00 36.58 3.93
326 327 0.461516 GCAGACCCCTTAACGCCTAC 60.462 60.000 0.00 0.00 0.00 3.18
327 328 0.899720 CAGACCCCTTAACGCCTACA 59.100 55.000 0.00 0.00 0.00 2.74
328 329 1.485066 CAGACCCCTTAACGCCTACAT 59.515 52.381 0.00 0.00 0.00 2.29
329 330 1.485066 AGACCCCTTAACGCCTACATG 59.515 52.381 0.00 0.00 0.00 3.21
330 331 1.208776 GACCCCTTAACGCCTACATGT 59.791 52.381 2.69 2.69 0.00 3.21
331 332 1.065709 ACCCCTTAACGCCTACATGTG 60.066 52.381 9.11 0.00 0.00 3.21
332 333 1.065709 CCCCTTAACGCCTACATGTGT 60.066 52.381 9.11 0.00 0.00 3.72
333 334 2.006888 CCCTTAACGCCTACATGTGTG 58.993 52.381 9.11 1.49 0.00 3.82
334 335 2.006888 CCTTAACGCCTACATGTGTGG 58.993 52.381 9.11 11.75 0.00 4.17
339 340 4.713946 CCTACATGTGTGGGCGTT 57.286 55.556 9.11 0.00 39.82 4.84
340 341 3.844911 CCTACATGTGTGGGCGTTA 57.155 52.632 9.11 0.00 39.82 3.18
341 342 2.325583 CCTACATGTGTGGGCGTTAT 57.674 50.000 9.11 0.00 39.82 1.89
342 343 2.210116 CCTACATGTGTGGGCGTTATC 58.790 52.381 9.11 0.00 39.82 1.75
343 344 2.419436 CCTACATGTGTGGGCGTTATCA 60.419 50.000 9.11 0.00 39.82 2.15
344 345 1.737838 ACATGTGTGGGCGTTATCAG 58.262 50.000 0.00 0.00 0.00 2.90
345 346 0.378257 CATGTGTGGGCGTTATCAGC 59.622 55.000 0.00 0.00 0.00 4.26
346 347 1.089481 ATGTGTGGGCGTTATCAGCG 61.089 55.000 0.00 0.00 35.00 5.18
347 348 1.740296 GTGTGGGCGTTATCAGCGT 60.740 57.895 0.00 0.00 35.00 5.07
348 349 1.739929 TGTGGGCGTTATCAGCGTG 60.740 57.895 0.00 0.00 35.00 5.34
349 350 2.817834 TGGGCGTTATCAGCGTGC 60.818 61.111 0.00 0.00 35.00 5.34
375 376 4.935205 TGTTTATCAAGATGACGGGTCAAG 59.065 41.667 5.50 0.00 43.58 3.02
377 378 5.614324 TTATCAAGATGACGGGTCAAGAT 57.386 39.130 5.50 9.33 43.58 2.40
407 408 2.034179 TGGATTGTATCTGGCGTAGTCG 59.966 50.000 0.00 0.00 40.37 4.18
429 430 4.563184 CGTGCACCTATCTTTACTTCTGTC 59.437 45.833 12.15 0.00 0.00 3.51
450 451 8.856103 TCTGTCATATAAACTCGGTTCATGATA 58.144 33.333 0.00 0.00 0.00 2.15
462 463 7.174426 ACTCGGTTCATGATAACGATGTATCTA 59.826 37.037 15.19 0.00 32.58 1.98
463 464 8.051901 TCGGTTCATGATAACGATGTATCTAT 57.948 34.615 12.11 0.00 32.58 1.98
484 485 4.849813 TCATCCATCAGTTCTGACCATT 57.150 40.909 4.58 0.00 0.00 3.16
486 487 6.312141 TCATCCATCAGTTCTGACCATTAA 57.688 37.500 4.58 0.00 0.00 1.40
495 496 9.911788 ATCAGTTCTGACCATTAAATCTACATT 57.088 29.630 4.58 0.00 0.00 2.71
537 538 5.199024 TGTGACATTTTTGCAACATAGCT 57.801 34.783 0.00 0.00 34.99 3.32
540 541 5.865552 GTGACATTTTTGCAACATAGCTCAT 59.134 36.000 0.00 0.00 34.99 2.90
553 554 7.340699 CAACATAGCTCATCGTCTATTCAAAC 58.659 38.462 0.00 0.00 0.00 2.93
586 587 5.384336 TGTTTCCTCATCTCATCCAAACAA 58.616 37.500 0.00 0.00 31.18 2.83
587 588 5.241506 TGTTTCCTCATCTCATCCAAACAAC 59.758 40.000 0.00 0.00 31.18 3.32
607 608 1.269569 CCTCAAAACAGGTTTTCGCCC 60.270 52.381 7.15 0.00 40.45 6.13
680 681 4.876107 CGGACAAAGCACCATAGAAACTAT 59.124 41.667 0.00 0.00 0.00 2.12
764 768 6.915843 CGGGCAATTTGATAGTATGTTAAACC 59.084 38.462 0.00 0.00 0.00 3.27
934 3154 1.589716 GCCAGACATCGCAAGGCTTT 61.590 55.000 0.00 0.00 42.01 3.51
949 3170 5.351458 CAAGGCTTTTAAAACTGCAAGAGT 58.649 37.500 12.58 0.00 37.43 3.24
969 3190 4.385825 AGTATTTTCTTGCTGTTCGTCCA 58.614 39.130 0.00 0.00 0.00 4.02
973 3194 0.249868 TCTTGCTGTTCGTCCACAGG 60.250 55.000 12.11 0.00 43.94 4.00
1058 3292 1.273606 CTCACTGGTGATCCTCGTGTT 59.726 52.381 3.80 0.00 39.13 3.32
1126 3372 1.303282 GGTCCATGGTGTCTTCCCC 59.697 63.158 12.58 0.00 0.00 4.81
1257 3503 2.764128 GTGATCTCCTCCCCGGCA 60.764 66.667 0.00 0.00 0.00 5.69
1489 3735 2.599281 TCGTCAGGAAGGTCGGCA 60.599 61.111 0.00 0.00 0.00 5.69
1641 3896 2.576615 GAAGTGGCTGTGAAAGAAGGT 58.423 47.619 0.00 0.00 0.00 3.50
1801 4056 3.309388 CGAGCAGAGAAAAAGAAGACGA 58.691 45.455 0.00 0.00 0.00 4.20
1847 4102 4.594920 AGATGAAGAAGAACACCTCCTGAA 59.405 41.667 0.00 0.00 0.00 3.02
2307 4597 0.599204 AAGGTCATCGTCAACGCGTT 60.599 50.000 20.79 20.79 39.60 4.84
2355 4645 1.079127 CCAACGCGGAGGAGTTCAT 60.079 57.895 12.47 0.00 33.67 2.57
2419 4712 0.541063 TGCAGTTCGAGTACCTCCCA 60.541 55.000 0.00 0.00 0.00 4.37
2485 4778 1.875813 CGTGCTGGAGCTCATCGTC 60.876 63.158 17.19 0.00 42.66 4.20
2674 4971 5.505819 GCAGCTCTCATCGTTGTATACTACA 60.506 44.000 16.04 5.47 36.79 2.74
2747 5048 4.411927 TGGGGCTTGTGTTATTGTGTTAT 58.588 39.130 0.00 0.00 0.00 1.89
2754 5055 6.920758 GCTTGTGTTATTGTGTTATTGTTGGA 59.079 34.615 0.00 0.00 0.00 3.53
2976 5311 3.559238 AGAATTGCCACGCTAAAACAG 57.441 42.857 0.00 0.00 0.00 3.16
3053 5450 5.586243 TGACATGCTAGTAGAAAAGATTGCC 59.414 40.000 0.00 0.00 0.00 4.52
3114 5511 5.812127 AGTTTTCAAGGATTTTCTGTGCAAC 59.188 36.000 0.00 0.00 37.35 4.17
3168 5565 6.865834 ATTTGTTAAGGATTTGCCATGGTA 57.134 33.333 14.67 5.86 40.02 3.25
3200 5597 8.188139 AGAAAATTGTTCGTGTTACATCAAAGT 58.812 29.630 0.00 0.00 0.00 2.66
3225 5622 3.055891 ACTGGTAAAAATTGCCATGCTCC 60.056 43.478 0.32 0.00 44.61 4.70
3226 5623 3.172339 TGGTAAAAATTGCCATGCTCCT 58.828 40.909 0.00 0.00 40.68 3.69
3269 5666 4.184629 GGATGTGTTCGCTTAGATTGACT 58.815 43.478 0.00 0.00 0.00 3.41
3270 5667 5.348986 GGATGTGTTCGCTTAGATTGACTA 58.651 41.667 0.00 0.00 0.00 2.59
3277 5674 6.072119 TGTTCGCTTAGATTGACTACTTGAGA 60.072 38.462 0.00 0.00 0.00 3.27
3292 5689 4.051922 ACTTGAGAGAACTGTTTAGTGCG 58.948 43.478 0.00 0.00 37.56 5.34
3293 5690 3.026630 TGAGAGAACTGTTTAGTGCGG 57.973 47.619 0.00 0.00 37.56 5.69
3297 5694 3.128349 GAGAACTGTTTAGTGCGGTCAA 58.872 45.455 0.00 0.00 37.56 3.18
3321 5720 3.756963 TCGTAGTCAGCTTAGATGTGTGT 59.243 43.478 0.00 0.00 0.00 3.72
3325 5724 3.321968 AGTCAGCTTAGATGTGTGTGTGA 59.678 43.478 0.00 0.00 0.00 3.58
3340 5739 4.100035 TGTGTGTGAGAGAGAACAGTGATT 59.900 41.667 0.00 0.00 0.00 2.57
3370 5769 4.447724 TGTCTTGCTTTGAGATTCGTACAC 59.552 41.667 0.00 0.00 0.00 2.90
3391 5790 5.232610 ACGGAAATTAAACGTGTCACAAA 57.767 34.783 3.42 0.00 39.64 2.83
3401 5800 1.062002 CGTGTCACAAAGTGTTCGCTT 59.938 47.619 3.42 0.00 34.79 4.68
3404 5803 4.271687 GTGTCACAAAGTGTTCGCTTAAG 58.728 43.478 0.00 0.00 34.79 1.85
3408 5807 5.451342 GTCACAAAGTGTTCGCTTAAGAAAC 59.549 40.000 6.67 10.08 34.79 2.78
3423 5822 2.907892 AGAAACCCCTCTGAGATGACA 58.092 47.619 6.17 0.00 0.00 3.58
3424 5823 2.569404 AGAAACCCCTCTGAGATGACAC 59.431 50.000 6.17 0.00 0.00 3.67
3427 5826 3.474798 ACCCCTCTGAGATGACACTAA 57.525 47.619 6.17 0.00 0.00 2.24
3431 5830 4.406972 CCCCTCTGAGATGACACTAAATCA 59.593 45.833 6.17 0.00 0.00 2.57
3434 5833 7.052873 CCCTCTGAGATGACACTAAATCATTT 58.947 38.462 6.17 0.00 36.92 2.32
3436 5835 9.605275 CCTCTGAGATGACACTAAATCATTTAA 57.395 33.333 6.17 0.00 36.92 1.52
3508 5907 9.154847 GAAAATTCCTTCAAAATACCCATTGAG 57.845 33.333 0.00 0.00 36.93 3.02
3509 5908 8.434589 AAATTCCTTCAAAATACCCATTGAGA 57.565 30.769 0.00 0.00 36.93 3.27
3522 5921 6.824305 ACCCATTGAGACAAGTTTATTCTG 57.176 37.500 0.00 0.00 0.00 3.02
3523 5922 6.542821 ACCCATTGAGACAAGTTTATTCTGA 58.457 36.000 0.00 0.00 0.00 3.27
3525 5924 7.337942 ACCCATTGAGACAAGTTTATTCTGATC 59.662 37.037 0.00 0.00 0.00 2.92
3526 5925 7.555554 CCCATTGAGACAAGTTTATTCTGATCT 59.444 37.037 0.00 0.00 0.00 2.75
3589 6074 1.154150 GCACATGCGCTCAAGGTTC 60.154 57.895 9.73 0.00 0.00 3.62
3598 6083 2.866762 GCGCTCAAGGTTCATAAGTAGG 59.133 50.000 0.00 0.00 0.00 3.18
3602 6087 5.292101 CGCTCAAGGTTCATAAGTAGGAAAG 59.708 44.000 0.00 0.00 0.00 2.62
3610 6095 1.492764 TAAGTAGGAAAGGCTCCCCG 58.507 55.000 2.66 0.00 46.81 5.73
3612 6097 2.366435 TAGGAAAGGCTCCCCGGG 60.366 66.667 15.80 15.80 46.81 5.73
3618 6103 4.658786 AGGCTCCCCGGGTTCAGT 62.659 66.667 21.85 0.00 35.76 3.41
3623 6108 3.307906 CCCCGGGTTCAGTCGACA 61.308 66.667 21.85 0.00 0.00 4.35
3629 6114 1.746517 GGTTCAGTCGACACCACCT 59.253 57.895 19.50 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.338973 CATGGTTGCTCAACTGCAGTT 59.661 47.619 26.36 26.36 44.27 3.16
12 13 0.956633 CATGGTTGCTCAACTGCAGT 59.043 50.000 15.25 15.25 44.27 4.40
13 14 0.242825 CCATGGTTGCTCAACTGCAG 59.757 55.000 13.48 13.48 44.27 4.41
14 15 1.808531 GCCATGGTTGCTCAACTGCA 61.809 55.000 14.67 3.93 40.94 4.41
15 16 1.080298 GCCATGGTTGCTCAACTGC 60.080 57.895 14.67 6.92 40.94 4.40
16 17 0.675083 TTGCCATGGTTGCTCAACTG 59.325 50.000 14.67 4.33 40.94 3.16
17 18 0.675633 GTTGCCATGGTTGCTCAACT 59.324 50.000 19.25 0.00 40.94 3.16
18 19 0.675633 AGTTGCCATGGTTGCTCAAC 59.324 50.000 19.02 19.02 40.45 3.18
19 20 0.675083 CAGTTGCCATGGTTGCTCAA 59.325 50.000 14.67 5.59 0.00 3.02
20 21 0.467844 ACAGTTGCCATGGTTGCTCA 60.468 50.000 14.67 0.00 0.00 4.26
21 22 1.470098 CTACAGTTGCCATGGTTGCTC 59.530 52.381 14.67 0.00 0.00 4.26
22 23 1.202927 ACTACAGTTGCCATGGTTGCT 60.203 47.619 14.67 5.95 0.00 3.91
23 24 1.247567 ACTACAGTTGCCATGGTTGC 58.752 50.000 14.67 3.52 0.00 4.17
34 35 2.870435 GCCATGTCGGACAACTACAGTT 60.870 50.000 15.72 0.00 36.12 3.16
35 36 1.337823 GCCATGTCGGACAACTACAGT 60.338 52.381 15.72 0.00 36.56 3.55
36 37 1.337728 TGCCATGTCGGACAACTACAG 60.338 52.381 15.72 1.98 36.56 2.74
37 38 0.682292 TGCCATGTCGGACAACTACA 59.318 50.000 15.72 8.46 36.56 2.74
38 39 1.463444 GTTGCCATGTCGGACAACTAC 59.537 52.381 15.72 10.65 43.12 2.73
39 40 1.803334 GTTGCCATGTCGGACAACTA 58.197 50.000 15.72 2.39 43.12 2.24
40 41 2.629002 GTTGCCATGTCGGACAACT 58.371 52.632 15.72 0.00 43.12 3.16
41 42 0.238289 CAGTTGCCATGTCGGACAAC 59.762 55.000 15.72 8.30 45.02 3.32
42 43 1.514678 GCAGTTGCCATGTCGGACAA 61.515 55.000 15.72 0.00 36.56 3.18
43 44 1.965930 GCAGTTGCCATGTCGGACA 60.966 57.895 14.01 14.01 36.56 4.02
44 45 1.915614 CTGCAGTTGCCATGTCGGAC 61.916 60.000 5.25 0.00 41.18 4.79
45 46 1.672030 CTGCAGTTGCCATGTCGGA 60.672 57.895 5.25 0.00 41.18 4.55
46 47 1.518056 AACTGCAGTTGCCATGTCGG 61.518 55.000 30.66 0.00 41.18 4.79
47 48 1.155889 TAACTGCAGTTGCCATGTCG 58.844 50.000 36.50 0.67 41.18 4.35
48 49 3.641437 TTTAACTGCAGTTGCCATGTC 57.359 42.857 36.50 0.00 41.18 3.06
49 50 3.573538 TCATTTAACTGCAGTTGCCATGT 59.426 39.130 36.50 15.57 41.18 3.21
50 51 4.177165 TCATTTAACTGCAGTTGCCATG 57.823 40.909 36.50 30.50 41.18 3.66
51 52 4.039004 TGTTCATTTAACTGCAGTTGCCAT 59.961 37.500 36.50 23.31 38.90 4.40
52 53 3.382865 TGTTCATTTAACTGCAGTTGCCA 59.617 39.130 36.50 22.26 38.90 4.92
53 54 3.976169 TGTTCATTTAACTGCAGTTGCC 58.024 40.909 36.50 17.24 38.90 4.52
54 55 4.445385 CCTTGTTCATTTAACTGCAGTTGC 59.555 41.667 36.50 19.02 38.90 4.17
55 56 5.830912 TCCTTGTTCATTTAACTGCAGTTG 58.169 37.500 36.50 23.43 38.90 3.16
56 57 6.321181 TCTTCCTTGTTCATTTAACTGCAGTT 59.679 34.615 32.97 32.97 38.99 3.16
57 58 5.827797 TCTTCCTTGTTCATTTAACTGCAGT 59.172 36.000 15.25 15.25 38.99 4.40
58 59 6.317789 TCTTCCTTGTTCATTTAACTGCAG 57.682 37.500 13.48 13.48 38.99 4.41
59 60 5.241506 CCTCTTCCTTGTTCATTTAACTGCA 59.758 40.000 0.00 0.00 38.99 4.41
60 61 5.335976 CCCTCTTCCTTGTTCATTTAACTGC 60.336 44.000 0.00 0.00 38.99 4.40
61 62 5.770162 ACCCTCTTCCTTGTTCATTTAACTG 59.230 40.000 0.00 0.00 38.99 3.16
62 63 5.953571 ACCCTCTTCCTTGTTCATTTAACT 58.046 37.500 0.00 0.00 38.99 2.24
63 64 5.183331 GGACCCTCTTCCTTGTTCATTTAAC 59.817 44.000 0.00 0.00 34.15 2.01
64 65 5.163034 TGGACCCTCTTCCTTGTTCATTTAA 60.163 40.000 0.00 0.00 36.51 1.52
65 66 4.352595 TGGACCCTCTTCCTTGTTCATTTA 59.647 41.667 0.00 0.00 36.51 1.40
66 67 3.140144 TGGACCCTCTTCCTTGTTCATTT 59.860 43.478 0.00 0.00 36.51 2.32
67 68 2.716424 TGGACCCTCTTCCTTGTTCATT 59.284 45.455 0.00 0.00 36.51 2.57
68 69 2.307098 CTGGACCCTCTTCCTTGTTCAT 59.693 50.000 0.00 0.00 36.51 2.57
69 70 1.699634 CTGGACCCTCTTCCTTGTTCA 59.300 52.381 0.00 0.00 36.51 3.18
70 71 1.978580 TCTGGACCCTCTTCCTTGTTC 59.021 52.381 0.00 0.00 36.51 3.18
71 72 1.700186 GTCTGGACCCTCTTCCTTGTT 59.300 52.381 0.00 0.00 36.51 2.83
72 73 1.353091 GTCTGGACCCTCTTCCTTGT 58.647 55.000 0.00 0.00 36.51 3.16
73 74 0.615850 GGTCTGGACCCTCTTCCTTG 59.384 60.000 8.48 0.00 45.68 3.61
74 75 3.090504 GGTCTGGACCCTCTTCCTT 57.909 57.895 8.48 0.00 45.68 3.36
75 76 4.899243 GGTCTGGACCCTCTTCCT 57.101 61.111 8.48 0.00 45.68 3.36
87 88 1.246056 CCCACAGTTGCCATGGTCTG 61.246 60.000 22.58 22.58 0.00 3.51
88 89 1.075482 CCCACAGTTGCCATGGTCT 59.925 57.895 14.67 7.00 0.00 3.85
89 90 1.978617 CCCCACAGTTGCCATGGTC 60.979 63.158 14.67 6.41 0.00 4.02
90 91 2.118076 CCCCACAGTTGCCATGGT 59.882 61.111 14.67 0.00 0.00 3.55
91 92 1.978617 GTCCCCACAGTTGCCATGG 60.979 63.158 7.63 7.63 0.00 3.66
92 93 2.334946 CGTCCCCACAGTTGCCATG 61.335 63.158 0.00 0.00 0.00 3.66
93 94 2.034066 CGTCCCCACAGTTGCCAT 59.966 61.111 0.00 0.00 0.00 4.40
94 95 4.947147 GCGTCCCCACAGTTGCCA 62.947 66.667 0.00 0.00 0.00 4.92
95 96 4.643387 AGCGTCCCCACAGTTGCC 62.643 66.667 0.00 0.00 0.00 4.52
96 97 3.357079 CAGCGTCCCCACAGTTGC 61.357 66.667 0.00 0.00 0.00 4.17
97 98 2.669569 CCAGCGTCCCCACAGTTG 60.670 66.667 0.00 0.00 0.00 3.16
98 99 3.168528 ACCAGCGTCCCCACAGTT 61.169 61.111 0.00 0.00 0.00 3.16
99 100 3.941188 CACCAGCGTCCCCACAGT 61.941 66.667 0.00 0.00 0.00 3.55
100 101 3.625897 TCACCAGCGTCCCCACAG 61.626 66.667 0.00 0.00 0.00 3.66
101 102 3.936203 GTCACCAGCGTCCCCACA 61.936 66.667 0.00 0.00 0.00 4.17
102 103 3.626924 AGTCACCAGCGTCCCCAC 61.627 66.667 0.00 0.00 0.00 4.61
103 104 3.625897 CAGTCACCAGCGTCCCCA 61.626 66.667 0.00 0.00 0.00 4.96
104 105 3.591254 GACAGTCACCAGCGTCCCC 62.591 68.421 0.00 0.00 0.00 4.81
105 106 2.048127 GACAGTCACCAGCGTCCC 60.048 66.667 0.00 0.00 0.00 4.46
106 107 1.664965 GTGACAGTCACCAGCGTCC 60.665 63.158 21.52 0.00 41.37 4.79
107 108 2.016704 CGTGACAGTCACCAGCGTC 61.017 63.158 25.11 1.83 44.20 5.19
108 109 2.027605 CGTGACAGTCACCAGCGT 59.972 61.111 25.11 0.00 44.20 5.07
109 110 3.406361 GCGTGACAGTCACCAGCG 61.406 66.667 25.11 15.88 44.20 5.18
110 111 3.406361 CGCGTGACAGTCACCAGC 61.406 66.667 25.11 21.62 44.20 4.85
111 112 2.734723 CCGCGTGACAGTCACCAG 60.735 66.667 25.11 18.78 44.20 4.00
112 113 4.961511 GCCGCGTGACAGTCACCA 62.962 66.667 25.11 0.00 44.20 4.17
125 126 4.865761 TATGGTCTCGCACGCCGC 62.866 66.667 0.00 0.00 36.73 6.53
126 127 2.202690 TTATGGTCTCGCACGCCG 60.203 61.111 0.00 0.00 38.61 6.46
127 128 1.883084 CCTTATGGTCTCGCACGCC 60.883 63.158 0.00 0.00 0.00 5.68
128 129 0.101759 TACCTTATGGTCTCGCACGC 59.898 55.000 3.06 0.00 44.78 5.34
129 130 1.269102 CCTACCTTATGGTCTCGCACG 60.269 57.143 3.06 0.00 44.78 5.34
130 131 2.029623 TCCTACCTTATGGTCTCGCAC 58.970 52.381 3.06 0.00 44.78 5.34
131 132 2.307768 CTCCTACCTTATGGTCTCGCA 58.692 52.381 3.06 0.00 44.78 5.10
132 133 1.614413 CCTCCTACCTTATGGTCTCGC 59.386 57.143 3.06 0.00 44.78 5.03
133 134 1.614413 GCCTCCTACCTTATGGTCTCG 59.386 57.143 3.06 0.00 44.78 4.04
134 135 1.972075 GGCCTCCTACCTTATGGTCTC 59.028 57.143 3.06 0.00 44.78 3.36
135 136 1.581149 AGGCCTCCTACCTTATGGTCT 59.419 52.381 0.00 0.00 44.78 3.85
136 137 1.694696 CAGGCCTCCTACCTTATGGTC 59.305 57.143 0.00 0.00 44.78 4.02
138 139 1.694696 GTCAGGCCTCCTACCTTATGG 59.305 57.143 0.00 0.00 34.42 2.74
139 140 1.341531 CGTCAGGCCTCCTACCTTATG 59.658 57.143 0.00 0.00 34.42 1.90
140 141 1.063114 ACGTCAGGCCTCCTACCTTAT 60.063 52.381 0.00 0.00 34.42 1.73
141 142 0.333993 ACGTCAGGCCTCCTACCTTA 59.666 55.000 0.00 0.00 34.42 2.69
142 143 0.333993 TACGTCAGGCCTCCTACCTT 59.666 55.000 0.00 0.00 34.42 3.50
143 144 0.395448 GTACGTCAGGCCTCCTACCT 60.395 60.000 0.00 0.00 38.35 3.08
144 145 1.722636 CGTACGTCAGGCCTCCTACC 61.723 65.000 0.00 0.00 29.64 3.18
145 146 1.722636 CCGTACGTCAGGCCTCCTAC 61.723 65.000 15.21 0.00 29.64 3.18
146 147 1.452651 CCGTACGTCAGGCCTCCTA 60.453 63.158 15.21 0.00 29.64 2.94
147 148 2.754658 CCGTACGTCAGGCCTCCT 60.755 66.667 15.21 0.00 0.00 3.69
148 149 3.834799 CCCGTACGTCAGGCCTCC 61.835 72.222 15.21 0.00 0.00 4.30
149 150 4.509737 GCCCGTACGTCAGGCCTC 62.510 72.222 19.62 0.00 41.00 4.70
153 154 4.047059 ACACGCCCGTACGTCAGG 62.047 66.667 15.21 9.59 46.34 3.86
154 155 2.803670 CACACGCCCGTACGTCAG 60.804 66.667 15.21 7.02 46.34 3.51
155 156 4.345962 CCACACGCCCGTACGTCA 62.346 66.667 15.21 0.00 46.34 4.35
166 167 1.865865 AAATAGATAGCGCCCACACG 58.134 50.000 2.29 0.00 0.00 4.49
167 168 2.287009 GCAAAATAGATAGCGCCCACAC 60.287 50.000 2.29 0.00 0.00 3.82
168 169 1.946768 GCAAAATAGATAGCGCCCACA 59.053 47.619 2.29 0.00 0.00 4.17
169 170 1.266989 GGCAAAATAGATAGCGCCCAC 59.733 52.381 2.29 0.00 33.31 4.61
170 171 1.604604 GGCAAAATAGATAGCGCCCA 58.395 50.000 2.29 0.00 33.31 5.36
172 173 1.266989 GTGGGCAAAATAGATAGCGCC 59.733 52.381 2.29 0.00 38.93 6.53
173 174 1.946768 TGTGGGCAAAATAGATAGCGC 59.053 47.619 0.00 0.00 39.95 5.92
174 175 2.032894 CGTGTGGGCAAAATAGATAGCG 60.033 50.000 0.00 0.00 0.00 4.26
175 176 2.943033 ACGTGTGGGCAAAATAGATAGC 59.057 45.455 0.00 0.00 0.00 2.97
176 177 4.750098 CCTACGTGTGGGCAAAATAGATAG 59.250 45.833 0.00 0.00 0.00 2.08
177 178 4.699637 CCTACGTGTGGGCAAAATAGATA 58.300 43.478 0.00 0.00 0.00 1.98
178 179 3.541632 CCTACGTGTGGGCAAAATAGAT 58.458 45.455 0.00 0.00 0.00 1.98
179 180 2.980568 CCTACGTGTGGGCAAAATAGA 58.019 47.619 0.00 0.00 0.00 1.98
188 189 1.754803 TCTCTTATGCCTACGTGTGGG 59.245 52.381 0.00 0.00 0.00 4.61
189 190 2.688446 TCTCTCTTATGCCTACGTGTGG 59.312 50.000 0.00 0.98 0.00 4.17
190 191 4.371855 TTCTCTCTTATGCCTACGTGTG 57.628 45.455 0.00 0.00 0.00 3.82
191 192 5.593010 GATTTCTCTCTTATGCCTACGTGT 58.407 41.667 0.00 0.00 0.00 4.49
192 193 4.677378 CGATTTCTCTCTTATGCCTACGTG 59.323 45.833 0.00 0.00 0.00 4.49
193 194 4.793353 GCGATTTCTCTCTTATGCCTACGT 60.793 45.833 0.00 0.00 0.00 3.57
194 195 3.670991 GCGATTTCTCTCTTATGCCTACG 59.329 47.826 0.00 0.00 0.00 3.51
195 196 3.670991 CGCGATTTCTCTCTTATGCCTAC 59.329 47.826 0.00 0.00 0.00 3.18
196 197 3.568430 TCGCGATTTCTCTCTTATGCCTA 59.432 43.478 3.71 0.00 0.00 3.93
197 198 2.362397 TCGCGATTTCTCTCTTATGCCT 59.638 45.455 3.71 0.00 0.00 4.75
198 199 2.728839 CTCGCGATTTCTCTCTTATGCC 59.271 50.000 10.36 0.00 0.00 4.40
199 200 3.633235 TCTCGCGATTTCTCTCTTATGC 58.367 45.455 10.36 0.00 0.00 3.14
200 201 6.575083 TTTTCTCGCGATTTCTCTCTTATG 57.425 37.500 10.36 0.00 0.00 1.90
223 224 3.670377 GCCCACGCGCCTCTTTTT 61.670 61.111 5.73 0.00 0.00 1.94
224 225 4.947147 TGCCCACGCGCCTCTTTT 62.947 61.111 5.73 0.00 38.08 2.27
225 226 2.813226 TAATGCCCACGCGCCTCTTT 62.813 55.000 5.73 0.43 38.08 2.52
226 227 3.323758 TAATGCCCACGCGCCTCTT 62.324 57.895 5.73 0.00 38.08 2.85
227 228 3.781307 TAATGCCCACGCGCCTCT 61.781 61.111 5.73 0.00 38.08 3.69
228 229 3.573491 GTAATGCCCACGCGCCTC 61.573 66.667 5.73 0.00 38.08 4.70
229 230 3.622060 AAGTAATGCCCACGCGCCT 62.622 57.895 5.73 0.00 38.08 5.52
230 231 3.131478 AAGTAATGCCCACGCGCC 61.131 61.111 5.73 0.00 38.08 6.53
231 232 2.100216 CAAGTAATGCCCACGCGC 59.900 61.111 5.73 0.00 38.08 6.86
232 233 0.239879 AAACAAGTAATGCCCACGCG 59.760 50.000 3.53 3.53 38.08 6.01
233 234 2.058057 CAAAACAAGTAATGCCCACGC 58.942 47.619 0.00 0.00 0.00 5.34
234 235 3.305110 GACAAAACAAGTAATGCCCACG 58.695 45.455 0.00 0.00 0.00 4.94
235 236 3.068873 TGGACAAAACAAGTAATGCCCAC 59.931 43.478 0.00 0.00 0.00 4.61
236 237 3.068873 GTGGACAAAACAAGTAATGCCCA 59.931 43.478 0.00 0.00 0.00 5.36
237 238 3.068873 TGTGGACAAAACAAGTAATGCCC 59.931 43.478 0.00 0.00 0.00 5.36
238 239 4.048504 GTGTGGACAAAACAAGTAATGCC 58.951 43.478 0.00 0.00 0.00 4.40
239 240 3.728718 CGTGTGGACAAAACAAGTAATGC 59.271 43.478 0.00 0.00 0.00 3.56
240 241 4.915704 ACGTGTGGACAAAACAAGTAATG 58.084 39.130 0.00 0.00 38.27 1.90
241 242 5.237779 CCTACGTGTGGACAAAACAAGTAAT 59.762 40.000 0.00 0.00 40.39 1.89
242 243 4.571580 CCTACGTGTGGACAAAACAAGTAA 59.428 41.667 0.00 0.00 40.39 2.24
243 244 4.121317 CCTACGTGTGGACAAAACAAGTA 58.879 43.478 0.00 3.11 40.14 2.24
244 245 2.940410 CCTACGTGTGGACAAAACAAGT 59.060 45.455 0.00 1.14 41.91 3.16
245 246 2.286772 GCCTACGTGTGGACAAAACAAG 60.287 50.000 12.69 0.00 33.85 3.16
246 247 1.671845 GCCTACGTGTGGACAAAACAA 59.328 47.619 12.69 0.00 0.00 2.83
247 248 1.301423 GCCTACGTGTGGACAAAACA 58.699 50.000 12.69 0.00 0.00 2.83
248 249 0.233848 CGCCTACGTGTGGACAAAAC 59.766 55.000 12.69 0.00 33.53 2.43
249 250 2.607457 CGCCTACGTGTGGACAAAA 58.393 52.632 12.69 0.00 33.53 2.44
250 251 4.347096 CGCCTACGTGTGGACAAA 57.653 55.556 12.69 0.00 33.53 2.83
261 262 1.521681 GATCAGCCCACACGCCTAC 60.522 63.158 0.00 0.00 0.00 3.18
262 263 2.731571 GGATCAGCCCACACGCCTA 61.732 63.158 0.00 0.00 0.00 3.93
263 264 4.101448 GGATCAGCCCACACGCCT 62.101 66.667 0.00 0.00 0.00 5.52
264 265 4.101448 AGGATCAGCCCACACGCC 62.101 66.667 0.00 0.00 37.37 5.68
265 266 2.512515 GAGGATCAGCCCACACGC 60.513 66.667 0.00 0.00 37.37 5.34
266 267 2.184020 TTGGAGGATCAGCCCACACG 62.184 60.000 0.00 0.00 36.25 4.49
267 268 0.038166 TTTGGAGGATCAGCCCACAC 59.962 55.000 0.00 0.00 36.25 3.82
268 269 0.776810 TTTTGGAGGATCAGCCCACA 59.223 50.000 0.00 0.00 36.25 4.17
269 270 1.177401 GTTTTGGAGGATCAGCCCAC 58.823 55.000 0.00 0.00 36.25 4.61
270 271 0.776810 TGTTTTGGAGGATCAGCCCA 59.223 50.000 0.00 0.00 36.25 5.36
271 272 1.177401 GTGTTTTGGAGGATCAGCCC 58.823 55.000 0.00 0.00 36.25 5.19
272 273 1.177401 GGTGTTTTGGAGGATCAGCC 58.823 55.000 0.00 0.00 36.25 4.85
273 274 1.541588 GTGGTGTTTTGGAGGATCAGC 59.458 52.381 0.00 0.00 36.25 4.26
274 275 2.554032 GTGTGGTGTTTTGGAGGATCAG 59.446 50.000 0.00 0.00 36.25 2.90
275 276 2.092158 TGTGTGGTGTTTTGGAGGATCA 60.092 45.455 0.00 0.00 36.25 2.92
276 277 2.582052 TGTGTGGTGTTTTGGAGGATC 58.418 47.619 0.00 0.00 0.00 3.36
277 278 2.746279 TGTGTGGTGTTTTGGAGGAT 57.254 45.000 0.00 0.00 0.00 3.24
278 279 2.516227 TTGTGTGGTGTTTTGGAGGA 57.484 45.000 0.00 0.00 0.00 3.71
279 280 3.601443 TTTTGTGTGGTGTTTTGGAGG 57.399 42.857 0.00 0.00 0.00 4.30
280 281 4.502962 ACATTTTGTGTGGTGTTTTGGAG 58.497 39.130 0.00 0.00 40.28 3.86
281 282 4.543590 ACATTTTGTGTGGTGTTTTGGA 57.456 36.364 0.00 0.00 40.28 3.53
294 295 1.039856 GGTCTGCCCACACATTTTGT 58.960 50.000 0.00 0.00 39.97 2.83
295 296 3.892200 GGTCTGCCCACACATTTTG 57.108 52.632 0.00 0.00 0.00 2.44
306 307 1.619807 TAGGCGTTAAGGGGTCTGCC 61.620 60.000 0.00 0.00 42.76 4.85
307 308 0.461516 GTAGGCGTTAAGGGGTCTGC 60.462 60.000 0.00 0.00 0.00 4.26
308 309 0.899720 TGTAGGCGTTAAGGGGTCTG 59.100 55.000 0.00 0.00 0.00 3.51
309 310 1.485066 CATGTAGGCGTTAAGGGGTCT 59.515 52.381 0.00 0.00 0.00 3.85
310 311 1.208776 ACATGTAGGCGTTAAGGGGTC 59.791 52.381 0.00 0.00 0.00 4.46
311 312 1.065709 CACATGTAGGCGTTAAGGGGT 60.066 52.381 0.00 0.00 0.00 4.95
312 313 1.065709 ACACATGTAGGCGTTAAGGGG 60.066 52.381 0.00 0.00 0.00 4.79
313 314 2.006888 CACACATGTAGGCGTTAAGGG 58.993 52.381 0.00 0.00 0.00 3.95
314 315 2.006888 CCACACATGTAGGCGTTAAGG 58.993 52.381 0.00 0.00 0.00 2.69
315 316 2.006888 CCCACACATGTAGGCGTTAAG 58.993 52.381 10.31 0.00 0.00 1.85
316 317 1.946747 GCCCACACATGTAGGCGTTAA 60.947 52.381 15.57 0.00 42.49 2.01
317 318 0.391927 GCCCACACATGTAGGCGTTA 60.392 55.000 15.57 0.00 42.49 3.18
318 319 1.674322 GCCCACACATGTAGGCGTT 60.674 57.895 15.57 0.00 42.49 4.84
319 320 2.046314 GCCCACACATGTAGGCGT 60.046 61.111 15.57 0.00 42.49 5.68
322 323 2.210116 GATAACGCCCACACATGTAGG 58.790 52.381 0.00 3.53 0.00 3.18
323 324 2.866156 CTGATAACGCCCACACATGTAG 59.134 50.000 0.00 0.00 0.00 2.74
324 325 2.899976 CTGATAACGCCCACACATGTA 58.100 47.619 0.00 0.00 0.00 2.29
325 326 1.737838 CTGATAACGCCCACACATGT 58.262 50.000 0.00 0.00 0.00 3.21
326 327 0.378257 GCTGATAACGCCCACACATG 59.622 55.000 0.00 0.00 0.00 3.21
327 328 1.089481 CGCTGATAACGCCCACACAT 61.089 55.000 0.00 0.00 0.00 3.21
328 329 1.739929 CGCTGATAACGCCCACACA 60.740 57.895 0.00 0.00 0.00 3.72
329 330 1.740296 ACGCTGATAACGCCCACAC 60.740 57.895 0.00 0.00 0.00 3.82
330 331 1.739929 CACGCTGATAACGCCCACA 60.740 57.895 0.00 0.00 0.00 4.17
331 332 3.089784 CACGCTGATAACGCCCAC 58.910 61.111 0.00 0.00 0.00 4.61
332 333 2.817834 GCACGCTGATAACGCCCA 60.818 61.111 0.00 0.00 0.00 5.36
333 334 1.714899 AATGCACGCTGATAACGCCC 61.715 55.000 0.00 0.00 0.00 6.13
334 335 0.589729 CAATGCACGCTGATAACGCC 60.590 55.000 0.00 0.00 0.00 5.68
335 336 0.096976 ACAATGCACGCTGATAACGC 59.903 50.000 0.00 0.00 0.00 4.84
336 337 2.525750 AACAATGCACGCTGATAACG 57.474 45.000 0.00 0.00 0.00 3.18
337 338 5.568482 TGATAAACAATGCACGCTGATAAC 58.432 37.500 0.00 0.00 0.00 1.89
338 339 5.809719 TGATAAACAATGCACGCTGATAA 57.190 34.783 0.00 0.00 0.00 1.75
339 340 5.584251 TCTTGATAAACAATGCACGCTGATA 59.416 36.000 0.00 0.00 37.88 2.15
340 341 4.395854 TCTTGATAAACAATGCACGCTGAT 59.604 37.500 0.00 0.00 37.88 2.90
341 342 3.750652 TCTTGATAAACAATGCACGCTGA 59.249 39.130 0.00 0.00 37.88 4.26
342 343 4.082274 TCTTGATAAACAATGCACGCTG 57.918 40.909 0.00 0.00 37.88 5.18
343 344 4.395854 TCATCTTGATAAACAATGCACGCT 59.604 37.500 0.00 0.00 37.88 5.07
344 345 4.496895 GTCATCTTGATAAACAATGCACGC 59.503 41.667 0.00 0.00 37.88 5.34
345 346 4.725280 CGTCATCTTGATAAACAATGCACG 59.275 41.667 0.00 0.00 37.88 5.34
346 347 5.030295 CCGTCATCTTGATAAACAATGCAC 58.970 41.667 0.00 0.00 37.88 4.57
347 348 4.096231 CCCGTCATCTTGATAAACAATGCA 59.904 41.667 0.00 0.00 37.88 3.96
348 349 4.096382 ACCCGTCATCTTGATAAACAATGC 59.904 41.667 0.00 0.00 37.88 3.56
349 350 5.353956 TGACCCGTCATCTTGATAAACAATG 59.646 40.000 0.00 0.00 34.76 2.82
375 376 8.230486 CGCCAGATACAATCCAAAATTACTATC 58.770 37.037 0.00 0.00 0.00 2.08
377 378 7.051623 ACGCCAGATACAATCCAAAATTACTA 58.948 34.615 0.00 0.00 0.00 1.82
397 398 1.317431 ATAGGTGCACGACTACGCCA 61.317 55.000 11.45 0.00 43.96 5.69
407 408 5.479306 TGACAGAAGTAAAGATAGGTGCAC 58.521 41.667 8.80 8.80 0.00 4.57
429 430 8.515473 TCGTTATCATGAACCGAGTTTATATG 57.485 34.615 0.00 0.00 0.00 1.78
450 451 7.473735 ACTGATGGATGATAGATACATCGTT 57.526 36.000 0.00 0.00 43.24 3.85
462 463 5.384145 AATGGTCAGAACTGATGGATGAT 57.616 39.130 7.77 0.00 42.18 2.45
463 464 4.849813 AATGGTCAGAACTGATGGATGA 57.150 40.909 7.77 0.00 42.18 2.92
563 564 4.984295 TGTTTGGATGAGATGAGGAAACA 58.016 39.130 0.00 0.00 31.29 2.83
564 565 5.335976 GGTTGTTTGGATGAGATGAGGAAAC 60.336 44.000 0.00 0.00 0.00 2.78
572 573 5.598005 TGTTTTGAGGTTGTTTGGATGAGAT 59.402 36.000 0.00 0.00 0.00 2.75
573 574 4.952957 TGTTTTGAGGTTGTTTGGATGAGA 59.047 37.500 0.00 0.00 0.00 3.27
575 576 4.099266 CCTGTTTTGAGGTTGTTTGGATGA 59.901 41.667 0.00 0.00 0.00 2.92
587 588 1.269569 GGGCGAAAACCTGTTTTGAGG 60.270 52.381 12.39 0.00 42.26 3.86
631 632 4.148079 TGCTCTATGACCTGAGACTATGG 58.852 47.826 0.00 0.00 32.44 2.74
680 681 5.879223 TCACAAACTTACGGGAAAAACACTA 59.121 36.000 0.00 0.00 0.00 2.74
732 733 3.689649 ACTATCAAATTGCCCGTGAGTTC 59.310 43.478 0.00 0.00 0.00 3.01
872 3092 8.976353 TGCACCATGGTAGTATGAATTAAATTT 58.024 29.630 19.28 0.00 0.00 1.82
893 3113 2.484264 GGTATCAACTGTCAACTGCACC 59.516 50.000 0.00 0.00 0.00 5.01
949 3170 4.130857 TGTGGACGAACAGCAAGAAAATA 58.869 39.130 0.00 0.00 0.00 1.40
969 3190 2.183679 TGGCTTGGTTTGTTTTCCTGT 58.816 42.857 0.00 0.00 0.00 4.00
973 3194 3.855858 TGTCTTGGCTTGGTTTGTTTTC 58.144 40.909 0.00 0.00 0.00 2.29
1058 3292 3.880490 TGAAGTTTTGCGGCTAAGAAAGA 59.120 39.130 0.00 0.00 0.00 2.52
1126 3372 0.250234 TGGAGAAGGTTGCCGATCAG 59.750 55.000 0.00 0.00 0.00 2.90
1801 4056 4.395583 GGTCTTCGTCGTCGCCGT 62.396 66.667 0.00 0.00 36.96 5.68
1810 4065 0.611062 TCATCTCCGGTGGTCTTCGT 60.611 55.000 0.00 0.00 0.00 3.85
2339 4629 1.741770 GCATGAACTCCTCCGCGTT 60.742 57.895 4.92 0.00 0.00 4.84
2355 4645 3.744719 CGTCGAACCTCTCCGGCA 61.745 66.667 0.00 0.00 35.61 5.69
2419 4712 1.833049 CCTCCTCCCGCTACCGAAT 60.833 63.158 0.00 0.00 36.29 3.34
2485 4778 1.892468 AGTAGTAGAAAAGTCGCGCG 58.108 50.000 26.76 26.76 0.00 6.86
2495 4788 3.015327 GGCTCCAGTCGAAGTAGTAGAA 58.985 50.000 0.00 0.00 0.00 2.10
2721 5022 2.037121 ACAATAACACAAGCCCCAAAGC 59.963 45.455 0.00 0.00 0.00 3.51
2891 5201 3.738982 TCGCCATGTTTAATCGGATGAT 58.261 40.909 0.00 0.00 35.98 2.45
2901 5211 1.134818 ACTCGCAGATCGCCATGTTTA 60.135 47.619 4.37 0.00 37.30 2.01
2907 5217 0.032130 GGAATACTCGCAGATCGCCA 59.968 55.000 4.37 0.00 37.30 5.69
3053 5450 4.025015 GCTGTAGCATGACAAATTCCTG 57.975 45.455 0.00 0.00 41.59 3.86
3078 5475 6.662865 TCCTTGAAAACTCATGGCAATTAA 57.337 33.333 0.00 0.00 35.59 1.40
3168 5565 4.900635 ACACGAACAATTTTCTTCTGCT 57.099 36.364 0.00 0.00 0.00 4.24
3200 5597 6.107901 AGCATGGCAATTTTTACCAGTTTA 57.892 33.333 0.00 0.00 36.78 2.01
3225 5622 5.048364 TCCGGGATGACAAATTGTGTTTTAG 60.048 40.000 2.20 0.00 41.96 1.85
3226 5623 4.827835 TCCGGGATGACAAATTGTGTTTTA 59.172 37.500 2.20 0.00 41.96 1.52
3269 5666 5.220381 CGCACTAAACAGTTCTCTCAAGTA 58.780 41.667 0.00 0.00 0.00 2.24
3270 5667 4.051922 CGCACTAAACAGTTCTCTCAAGT 58.948 43.478 0.00 0.00 0.00 3.16
3277 5674 2.870411 GTTGACCGCACTAAACAGTTCT 59.130 45.455 0.00 0.00 0.00 3.01
3292 5689 2.726832 AAGCTGACTACGAGTTGACC 57.273 50.000 0.00 0.00 0.00 4.02
3293 5690 4.681835 TCTAAGCTGACTACGAGTTGAC 57.318 45.455 0.00 0.00 0.00 3.18
3297 5694 4.011023 ACACATCTAAGCTGACTACGAGT 58.989 43.478 0.00 0.00 0.00 4.18
3321 5720 3.555795 GGCAATCACTGTTCTCTCTCACA 60.556 47.826 0.00 0.00 0.00 3.58
3325 5724 2.611473 CGTGGCAATCACTGTTCTCTCT 60.611 50.000 0.00 0.00 43.94 3.10
3340 5739 0.746204 TCAAAGCAAGACACGTGGCA 60.746 50.000 26.11 0.00 0.00 4.92
3346 5745 4.447724 TGTACGAATCTCAAAGCAAGACAC 59.552 41.667 0.00 0.00 0.00 3.67
3370 5769 5.170625 CACTTTGTGACACGTTTAATTTCCG 59.829 40.000 0.22 0.00 35.23 4.30
3391 5790 2.105993 AGGGGTTTCTTAAGCGAACACT 59.894 45.455 17.65 13.51 32.54 3.55
3401 5800 4.223032 GTGTCATCTCAGAGGGGTTTCTTA 59.777 45.833 0.00 0.00 0.00 2.10
3404 5803 2.569404 AGTGTCATCTCAGAGGGGTTTC 59.431 50.000 0.00 0.00 0.00 2.78
3408 5807 4.406972 TGATTTAGTGTCATCTCAGAGGGG 59.593 45.833 0.00 0.00 0.00 4.79
3483 5882 8.879227 TCTCAATGGGTATTTTGAAGGAATTTT 58.121 29.630 0.00 0.00 31.85 1.82
3522 5921 5.221621 CCCCAGAGATGGAGTAGAAAAGATC 60.222 48.000 0.00 0.00 0.00 2.75
3523 5922 4.657969 CCCCAGAGATGGAGTAGAAAAGAT 59.342 45.833 0.00 0.00 0.00 2.40
3525 5924 4.033709 TCCCCAGAGATGGAGTAGAAAAG 58.966 47.826 0.00 0.00 0.00 2.27
3526 5925 4.033709 CTCCCCAGAGATGGAGTAGAAAA 58.966 47.826 0.00 0.00 43.39 2.29
3534 5933 0.636647 TAGTGCTCCCCAGAGATGGA 59.363 55.000 0.00 0.00 43.39 3.41
3535 5934 1.727062 ATAGTGCTCCCCAGAGATGG 58.273 55.000 0.00 0.00 43.39 3.51
3537 5936 2.053244 CCAATAGTGCTCCCCAGAGAT 58.947 52.381 0.00 0.00 43.39 2.75
3540 5939 0.911769 CACCAATAGTGCTCCCCAGA 59.088 55.000 0.00 0.00 40.28 3.86
3541 5940 3.483954 CACCAATAGTGCTCCCCAG 57.516 57.895 0.00 0.00 40.28 4.45
3585 6070 4.452825 GGAGCCTTTCCTACTTATGAACC 58.547 47.826 0.00 0.00 43.16 3.62
3589 6074 2.224305 CGGGGAGCCTTTCCTACTTATG 60.224 54.545 0.00 0.00 45.98 1.90
3598 6083 2.045242 GAACCCGGGGAGCCTTTC 60.045 66.667 27.92 14.64 0.00 2.62
3602 6087 4.097361 GACTGAACCCGGGGAGCC 62.097 72.222 27.92 11.09 0.00 4.70
3610 6095 1.301479 GGTGGTGTCGACTGAACCC 60.301 63.158 17.92 9.70 32.70 4.11
3612 6097 0.319641 GGAGGTGGTGTCGACTGAAC 60.320 60.000 17.92 11.31 0.00 3.18
3618 6103 1.970114 GACGAGGAGGTGGTGTCGA 60.970 63.158 0.00 0.00 36.30 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.