Multiple sequence alignment - TraesCS3B01G460900
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G460900
chr3B
100.000
3639
0
0
1
3639
704263719
704260081
0.000000e+00
6721.0
1
TraesCS3B01G460900
chr3B
100.000
31
0
0
3339
3369
68902733
68902703
1.410000e-04
58.4
2
TraesCS3B01G460900
chr3D
95.763
2077
74
5
833
2899
532125856
532123784
0.000000e+00
3336.0
3
TraesCS3B01G460900
chr3D
92.385
499
33
3
351
846
532128554
532128058
0.000000e+00
706.0
4
TraesCS3B01G460900
chr3D
90.331
362
34
1
3023
3384
532123573
532123213
1.180000e-129
473.0
5
TraesCS3B01G460900
chr3D
89.014
355
33
5
7
358
433305957
433305606
5.580000e-118
435.0
6
TraesCS3B01G460900
chr3D
94.574
129
7
0
2910
3038
532123748
532123620
2.220000e-47
200.0
7
TraesCS3B01G460900
chr3A
93.216
2152
111
13
640
2785
667308340
667306218
0.000000e+00
3133.0
8
TraesCS3B01G460900
chr3A
88.522
758
55
12
2777
3522
667296872
667296135
0.000000e+00
889.0
9
TraesCS3B01G460900
chr3A
90.722
97
9
0
3543
3639
667296028
667295932
2.950000e-26
130.0
10
TraesCS3B01G460900
chr4D
85.138
1736
200
35
1001
2696
448395032
448393315
0.000000e+00
1724.0
11
TraesCS3B01G460900
chr2A
77.256
1640
322
34
994
2599
678994556
678996178
0.000000e+00
915.0
12
TraesCS3B01G460900
chr2A
78.178
944
169
31
1000
1929
684915848
684914928
5.270000e-158
568.0
13
TraesCS3B01G460900
chr2A
78.514
740
150
9
1038
1773
34157556
34156822
9.140000e-131
477.0
14
TraesCS3B01G460900
chr2A
77.442
563
124
2
2004
2566
678677752
678677193
2.090000e-87
333.0
15
TraesCS3B01G460900
chr2A
95.000
40
0
2
587
626
22019270
22019307
1.090000e-05
62.1
16
TraesCS3B01G460900
chr5B
93.623
345
19
3
6
348
672583037
672582694
2.510000e-141
512.0
17
TraesCS3B01G460900
chr5B
90.625
352
28
4
1
348
206790976
206790626
2.560000e-126
462.0
18
TraesCS3B01G460900
chr5B
89.459
351
33
3
1
348
458688787
458689136
1.200000e-119
440.0
19
TraesCS3B01G460900
chr5B
76.615
449
72
19
2981
3423
224325537
224325116
2.200000e-52
217.0
20
TraesCS3B01G460900
chr5B
95.122
41
0
2
587
627
290747807
290747769
3.030000e-06
63.9
21
TraesCS3B01G460900
chrUn
91.014
345
29
1
1
343
39248576
39248920
7.120000e-127
464.0
22
TraesCS3B01G460900
chrUn
76.339
672
142
15
1104
1765
12449706
12450370
9.670000e-91
344.0
23
TraesCS3B01G460900
chr1B
91.040
346
27
3
6
348
623720200
623720544
7.120000e-127
464.0
24
TraesCS3B01G460900
chr1B
95.000
40
2
0
589
628
325287088
325287049
3.030000e-06
63.9
25
TraesCS3B01G460900
chr1B
92.683
41
2
1
592
632
10007846
10007807
1.410000e-04
58.4
26
TraesCS3B01G460900
chr7D
89.855
345
32
2
6
348
45127102
45126759
1.200000e-119
440.0
27
TraesCS3B01G460900
chr5D
89.744
351
27
7
7
351
23279700
23279353
1.200000e-119
440.0
28
TraesCS3B01G460900
chr5D
97.222
36
1
0
593
628
255941230
255941265
1.090000e-05
62.1
29
TraesCS3B01G460900
chr2D
89.625
347
32
4
6
351
615976808
615976465
4.310000e-119
438.0
30
TraesCS3B01G460900
chr2D
79.700
601
122
0
1999
2599
536480833
536481433
5.580000e-118
435.0
31
TraesCS3B01G460900
chr2D
78.546
564
116
4
2004
2566
535581112
535580553
2.060000e-97
366.0
32
TraesCS3B01G460900
chr2D
76.042
672
144
15
1104
1765
12324649
12323985
2.090000e-87
333.0
33
TraesCS3B01G460900
chr2D
92.857
42
3
0
586
627
336505891
336505932
1.090000e-05
62.1
34
TraesCS3B01G460900
chr2B
77.482
564
122
4
2004
2566
636821770
636821211
2.090000e-87
333.0
35
TraesCS3B01G460900
chr2B
76.962
599
129
8
2004
2599
638752977
638753569
2.090000e-87
333.0
36
TraesCS3B01G460900
chr2B
79.535
215
41
1
1000
1211
647004080
647003866
2.260000e-32
150.0
37
TraesCS3B01G460900
chr1D
75.000
324
63
14
3113
3424
54851537
54851220
2.280000e-27
134.0
38
TraesCS3B01G460900
chr1D
86.842
76
10
0
3334
3409
211507496
211507571
6.470000e-13
86.1
39
TraesCS3B01G460900
chr5A
74.178
426
52
29
2970
3390
272950526
272950154
1.370000e-24
124.0
40
TraesCS3B01G460900
chr7B
97.222
36
1
0
593
628
707816812
707816777
1.090000e-05
62.1
41
TraesCS3B01G460900
chr4A
95.000
40
1
1
589
628
722799645
722799683
1.090000e-05
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G460900
chr3B
704260081
704263719
3638
True
6721.00
6721
100.00000
1
3639
1
chr3B.!!$R2
3638
1
TraesCS3B01G460900
chr3D
532123213
532128554
5341
True
1178.75
3336
93.26325
351
3384
4
chr3D.!!$R2
3033
2
TraesCS3B01G460900
chr3A
667306218
667308340
2122
True
3133.00
3133
93.21600
640
2785
1
chr3A.!!$R1
2145
3
TraesCS3B01G460900
chr3A
667295932
667296872
940
True
509.50
889
89.62200
2777
3639
2
chr3A.!!$R2
862
4
TraesCS3B01G460900
chr4D
448393315
448395032
1717
True
1724.00
1724
85.13800
1001
2696
1
chr4D.!!$R1
1695
5
TraesCS3B01G460900
chr2A
678994556
678996178
1622
False
915.00
915
77.25600
994
2599
1
chr2A.!!$F2
1605
6
TraesCS3B01G460900
chr2A
684914928
684915848
920
True
568.00
568
78.17800
1000
1929
1
chr2A.!!$R3
929
7
TraesCS3B01G460900
chr2A
34156822
34157556
734
True
477.00
477
78.51400
1038
1773
1
chr2A.!!$R1
735
8
TraesCS3B01G460900
chr2A
678677193
678677752
559
True
333.00
333
77.44200
2004
2566
1
chr2A.!!$R2
562
9
TraesCS3B01G460900
chrUn
12449706
12450370
664
False
344.00
344
76.33900
1104
1765
1
chrUn.!!$F1
661
10
TraesCS3B01G460900
chr2D
536480833
536481433
600
False
435.00
435
79.70000
1999
2599
1
chr2D.!!$F2
600
11
TraesCS3B01G460900
chr2D
535580553
535581112
559
True
366.00
366
78.54600
2004
2566
1
chr2D.!!$R2
562
12
TraesCS3B01G460900
chr2D
12323985
12324649
664
True
333.00
333
76.04200
1104
1765
1
chr2D.!!$R1
661
13
TraesCS3B01G460900
chr2B
636821211
636821770
559
True
333.00
333
77.48200
2004
2566
1
chr2B.!!$R1
562
14
TraesCS3B01G460900
chr2B
638752977
638753569
592
False
333.00
333
76.96200
2004
2599
1
chr2B.!!$F1
595
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
286
287
0.038166
GTGTGGGCTGATCCTCCAAA
59.962
55.0
3.20
0.0
34.39
3.28
F
973
3194
0.249868
TCTTGCTGTTCGTCCACAGG
60.250
55.0
12.11
0.0
43.94
4.00
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1126
3372
0.250234
TGGAGAAGGTTGCCGATCAG
59.750
55.0
0.00
0.0
0.0
2.90
R
2907
5217
0.032130
GGAATACTCGCAGATCGCCA
59.968
55.0
4.37
0.0
37.3
5.69
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
19
20
1.466856
CCATACATGGCAACTGCAGT
58.533
50.000
15.25
15.25
41.75
4.40
20
21
1.820519
CCATACATGGCAACTGCAGTT
59.179
47.619
26.36
26.36
41.75
3.16
29
30
3.189568
AACTGCAGTTGAGCAACCA
57.810
47.368
30.66
1.68
45.13
3.67
30
31
1.696063
AACTGCAGTTGAGCAACCAT
58.304
45.000
30.66
2.58
45.13
3.55
31
32
0.956633
ACTGCAGTTGAGCAACCATG
59.043
50.000
15.25
4.34
45.13
3.66
32
33
0.242825
CTGCAGTTGAGCAACCATGG
59.757
55.000
11.19
11.19
45.13
3.66
33
34
1.080298
GCAGTTGAGCAACCATGGC
60.080
57.895
13.04
0.00
42.06
4.40
34
35
1.808531
GCAGTTGAGCAACCATGGCA
61.809
55.000
13.04
0.00
42.06
4.92
35
36
0.675083
CAGTTGAGCAACCATGGCAA
59.325
50.000
13.04
4.49
42.06
4.52
36
37
0.675633
AGTTGAGCAACCATGGCAAC
59.324
50.000
19.02
19.02
42.06
4.17
37
38
0.675633
GTTGAGCAACCATGGCAACT
59.324
50.000
19.25
11.63
36.73
3.16
38
39
0.675083
TTGAGCAACCATGGCAACTG
59.325
50.000
13.04
5.49
37.61
3.16
39
40
0.467844
TGAGCAACCATGGCAACTGT
60.468
50.000
13.04
0.00
37.61
3.55
40
41
1.202867
TGAGCAACCATGGCAACTGTA
60.203
47.619
13.04
0.00
37.61
2.74
41
42
1.470098
GAGCAACCATGGCAACTGTAG
59.530
52.381
13.04
0.00
37.61
2.74
42
43
1.202927
AGCAACCATGGCAACTGTAGT
60.203
47.619
13.04
0.00
37.61
2.73
43
44
1.613437
GCAACCATGGCAACTGTAGTT
59.387
47.619
13.04
0.00
39.12
2.24
54
55
2.743636
ACTGTAGTTGTCCGACATGG
57.256
50.000
1.09
0.00
40.09
3.66
55
56
1.337823
ACTGTAGTTGTCCGACATGGC
60.338
52.381
1.09
0.00
37.80
4.40
56
57
0.682292
TGTAGTTGTCCGACATGGCA
59.318
50.000
1.09
0.00
37.80
4.92
57
58
1.070914
TGTAGTTGTCCGACATGGCAA
59.929
47.619
1.09
0.00
37.80
4.52
58
59
1.463444
GTAGTTGTCCGACATGGCAAC
59.537
52.381
1.09
5.44
46.38
4.17
59
60
2.629002
GTTGTCCGACATGGCAACT
58.371
52.632
1.09
0.00
44.47
3.16
60
61
0.238289
GTTGTCCGACATGGCAACTG
59.762
55.000
1.09
0.00
44.47
3.16
61
62
1.514678
TTGTCCGACATGGCAACTGC
61.515
55.000
1.09
0.00
37.80
4.40
62
63
1.965930
GTCCGACATGGCAACTGCA
60.966
57.895
0.00
0.00
44.36
4.41
63
64
1.672030
TCCGACATGGCAACTGCAG
60.672
57.895
13.48
13.48
44.36
4.41
64
65
1.968017
CCGACATGGCAACTGCAGT
60.968
57.895
15.25
15.25
44.36
4.40
65
66
1.518056
CCGACATGGCAACTGCAGTT
61.518
55.000
26.36
26.36
44.36
3.16
66
67
1.155889
CGACATGGCAACTGCAGTTA
58.844
50.000
30.67
16.98
44.36
2.24
67
68
1.535028
CGACATGGCAACTGCAGTTAA
59.465
47.619
30.67
19.43
44.36
2.01
68
69
2.031245
CGACATGGCAACTGCAGTTAAA
60.031
45.455
30.67
19.09
44.36
1.52
69
70
3.366273
CGACATGGCAACTGCAGTTAAAT
60.366
43.478
30.67
20.35
44.36
1.40
70
71
3.916761
ACATGGCAACTGCAGTTAAATG
58.083
40.909
30.67
29.58
44.36
2.32
71
72
3.573538
ACATGGCAACTGCAGTTAAATGA
59.426
39.130
33.22
19.61
44.36
2.57
72
73
4.039004
ACATGGCAACTGCAGTTAAATGAA
59.961
37.500
33.22
19.65
44.36
2.57
73
74
3.976169
TGGCAACTGCAGTTAAATGAAC
58.024
40.909
30.67
15.85
44.36
3.18
74
75
3.382865
TGGCAACTGCAGTTAAATGAACA
59.617
39.130
30.67
17.97
44.36
3.18
75
76
4.142071
TGGCAACTGCAGTTAAATGAACAA
60.142
37.500
30.67
6.45
44.36
2.83
76
77
4.445385
GGCAACTGCAGTTAAATGAACAAG
59.555
41.667
30.67
15.56
44.36
3.16
77
78
4.445385
GCAACTGCAGTTAAATGAACAAGG
59.555
41.667
30.67
15.06
40.86
3.61
78
79
5.735922
GCAACTGCAGTTAAATGAACAAGGA
60.736
40.000
30.67
0.00
40.86
3.36
79
80
6.272318
CAACTGCAGTTAAATGAACAAGGAA
58.728
36.000
30.67
0.00
40.86
3.36
80
81
6.076981
ACTGCAGTTAAATGAACAAGGAAG
57.923
37.500
15.25
0.00
40.86
3.46
81
82
5.827797
ACTGCAGTTAAATGAACAAGGAAGA
59.172
36.000
15.25
0.00
40.86
2.87
82
83
6.016777
ACTGCAGTTAAATGAACAAGGAAGAG
60.017
38.462
15.25
0.00
40.86
2.85
83
84
5.241506
TGCAGTTAAATGAACAAGGAAGAGG
59.758
40.000
7.18
0.00
40.86
3.69
84
85
5.335976
GCAGTTAAATGAACAAGGAAGAGGG
60.336
44.000
7.18
0.00
40.86
4.30
85
86
5.770162
CAGTTAAATGAACAAGGAAGAGGGT
59.230
40.000
0.00
0.00
40.86
4.34
86
87
6.004574
AGTTAAATGAACAAGGAAGAGGGTC
58.995
40.000
0.00
0.00
40.86
4.46
87
88
3.441500
AATGAACAAGGAAGAGGGTCC
57.558
47.619
0.00
0.00
38.03
4.46
88
89
1.814429
TGAACAAGGAAGAGGGTCCA
58.186
50.000
0.00
0.00
40.48
4.02
89
90
1.699634
TGAACAAGGAAGAGGGTCCAG
59.300
52.381
0.00
0.00
40.48
3.86
90
91
1.978580
GAACAAGGAAGAGGGTCCAGA
59.021
52.381
0.00
0.00
40.48
3.86
91
92
1.353091
ACAAGGAAGAGGGTCCAGAC
58.647
55.000
0.00
0.00
40.48
3.51
103
104
4.828409
CCAGACCATGGCAACTGT
57.172
55.556
23.28
2.25
43.83
3.55
104
105
2.260247
CCAGACCATGGCAACTGTG
58.740
57.895
23.28
15.28
43.83
3.66
105
106
1.246056
CCAGACCATGGCAACTGTGG
61.246
60.000
23.28
14.76
43.83
4.17
106
107
1.075482
AGACCATGGCAACTGTGGG
59.925
57.895
13.04
0.00
44.26
4.61
107
108
1.978617
GACCATGGCAACTGTGGGG
60.979
63.158
13.04
0.00
44.26
4.96
108
109
2.424842
GACCATGGCAACTGTGGGGA
62.425
60.000
13.04
0.00
44.26
4.81
109
110
1.978617
CCATGGCAACTGTGGGGAC
60.979
63.158
0.00
0.00
38.77
4.46
110
111
2.034066
ATGGCAACTGTGGGGACG
59.966
61.111
0.00
0.00
37.61
4.79
111
112
4.947147
TGGCAACTGTGGGGACGC
62.947
66.667
0.00
0.00
42.66
5.19
112
113
4.643387
GGCAACTGTGGGGACGCT
62.643
66.667
0.00
0.00
42.82
5.07
113
114
3.357079
GCAACTGTGGGGACGCTG
61.357
66.667
0.00
0.00
44.41
5.18
114
115
2.669569
CAACTGTGGGGACGCTGG
60.670
66.667
0.00
0.00
43.29
4.85
115
116
3.168528
AACTGTGGGGACGCTGGT
61.169
61.111
0.00
0.00
43.29
4.00
116
117
3.476031
AACTGTGGGGACGCTGGTG
62.476
63.158
0.00
0.00
43.29
4.17
117
118
3.625897
CTGTGGGGACGCTGGTGA
61.626
66.667
0.00
0.00
42.82
4.02
118
119
3.883744
CTGTGGGGACGCTGGTGAC
62.884
68.421
0.00
0.00
42.82
3.67
119
120
3.626924
GTGGGGACGCTGGTGACT
61.627
66.667
0.00
0.00
38.02
3.41
120
121
3.625897
TGGGGACGCTGGTGACTG
61.626
66.667
0.00
0.00
0.00
3.51
121
122
3.626924
GGGGACGCTGGTGACTGT
61.627
66.667
0.00
0.00
0.00
3.55
122
123
2.048127
GGGACGCTGGTGACTGTC
60.048
66.667
0.00
0.00
0.00
3.51
123
124
2.734591
GGACGCTGGTGACTGTCA
59.265
61.111
6.36
6.36
33.04
3.58
124
125
1.664965
GGACGCTGGTGACTGTCAC
60.665
63.158
28.29
28.29
46.23
3.67
142
143
4.865761
GCGGCGTGCGAGACCATA
62.866
66.667
9.37
0.00
0.00
2.74
143
144
2.202690
CGGCGTGCGAGACCATAA
60.203
61.111
0.00
0.00
0.00
1.90
144
145
2.230940
CGGCGTGCGAGACCATAAG
61.231
63.158
0.00
0.00
0.00
1.73
145
146
1.883084
GGCGTGCGAGACCATAAGG
60.883
63.158
0.00
0.00
42.21
2.69
157
158
2.103153
CCATAAGGTAGGAGGCCTGA
57.897
55.000
12.00
0.00
36.30
3.86
158
159
1.694696
CCATAAGGTAGGAGGCCTGAC
59.305
57.143
12.00
5.04
36.30
3.51
159
160
1.341531
CATAAGGTAGGAGGCCTGACG
59.658
57.143
12.00
0.00
36.30
4.35
160
161
0.333993
TAAGGTAGGAGGCCTGACGT
59.666
55.000
12.00
3.95
36.30
4.34
161
162
0.333993
AAGGTAGGAGGCCTGACGTA
59.666
55.000
12.00
0.00
36.30
3.57
162
163
0.395448
AGGTAGGAGGCCTGACGTAC
60.395
60.000
12.00
12.93
34.61
3.67
163
164
1.722636
GGTAGGAGGCCTGACGTACG
61.723
65.000
12.00
15.01
34.61
3.67
164
165
1.452651
TAGGAGGCCTGACGTACGG
60.453
63.158
21.06
2.24
34.61
4.02
170
171
4.047059
CCTGACGTACGGGCGTGT
62.047
66.667
21.06
0.00
45.79
4.49
171
172
2.803670
CTGACGTACGGGCGTGTG
60.804
66.667
21.06
0.00
45.79
3.82
172
173
4.345962
TGACGTACGGGCGTGTGG
62.346
66.667
21.06
0.00
45.79
4.17
184
185
3.588277
CGTGTGGGCGCTATCTATT
57.412
52.632
7.64
0.00
0.00
1.73
185
186
1.865865
CGTGTGGGCGCTATCTATTT
58.134
50.000
7.64
0.00
0.00
1.40
186
187
2.210116
CGTGTGGGCGCTATCTATTTT
58.790
47.619
7.64
0.00
0.00
1.82
187
188
2.032894
CGTGTGGGCGCTATCTATTTTG
60.033
50.000
7.64
0.00
0.00
2.44
188
189
1.946768
TGTGGGCGCTATCTATTTTGC
59.053
47.619
7.64
0.00
0.00
3.68
189
190
1.266989
GTGGGCGCTATCTATTTTGCC
59.733
52.381
7.64
0.00
41.72
4.52
191
192
1.604604
GGCGCTATCTATTTTGCCCA
58.395
50.000
7.64
0.00
36.51
5.36
192
193
1.266989
GGCGCTATCTATTTTGCCCAC
59.733
52.381
7.64
0.00
36.51
4.61
193
194
1.946768
GCGCTATCTATTTTGCCCACA
59.053
47.619
0.00
0.00
0.00
4.17
194
195
2.287009
GCGCTATCTATTTTGCCCACAC
60.287
50.000
0.00
0.00
0.00
3.82
195
196
2.032894
CGCTATCTATTTTGCCCACACG
60.033
50.000
0.00
0.00
0.00
4.49
196
197
2.943033
GCTATCTATTTTGCCCACACGT
59.057
45.455
0.00
0.00
0.00
4.49
197
198
4.124238
GCTATCTATTTTGCCCACACGTA
58.876
43.478
0.00
0.00
0.00
3.57
198
199
4.211374
GCTATCTATTTTGCCCACACGTAG
59.789
45.833
0.00
0.00
0.00
3.51
199
200
2.980568
TCTATTTTGCCCACACGTAGG
58.019
47.619
0.00
0.00
0.00
3.18
207
208
2.225068
CCCACACGTAGGCATAAGAG
57.775
55.000
0.00
0.00
0.00
2.85
208
209
1.754803
CCCACACGTAGGCATAAGAGA
59.245
52.381
0.00
0.00
0.00
3.10
209
210
2.223829
CCCACACGTAGGCATAAGAGAG
60.224
54.545
0.00
0.00
0.00
3.20
210
211
2.688446
CCACACGTAGGCATAAGAGAGA
59.312
50.000
0.00
0.00
0.00
3.10
211
212
3.130516
CCACACGTAGGCATAAGAGAGAA
59.869
47.826
0.00
0.00
0.00
2.87
212
213
4.381612
CCACACGTAGGCATAAGAGAGAAA
60.382
45.833
0.00
0.00
0.00
2.52
213
214
5.352284
CACACGTAGGCATAAGAGAGAAAT
58.648
41.667
0.00
0.00
0.00
2.17
214
215
5.460419
CACACGTAGGCATAAGAGAGAAATC
59.540
44.000
0.00
0.00
0.00
2.17
215
216
4.677378
CACGTAGGCATAAGAGAGAAATCG
59.323
45.833
0.00
0.00
0.00
3.34
216
217
3.670991
CGTAGGCATAAGAGAGAAATCGC
59.329
47.826
0.00
0.00
0.00
4.58
217
218
2.748605
AGGCATAAGAGAGAAATCGCG
58.251
47.619
0.00
0.00
0.00
5.87
218
219
2.362397
AGGCATAAGAGAGAAATCGCGA
59.638
45.455
13.09
13.09
0.00
5.87
219
220
2.728839
GGCATAAGAGAGAAATCGCGAG
59.271
50.000
16.66
0.00
0.00
5.03
240
241
3.670377
AAAAAGAGGCGCGTGGGC
61.670
61.111
7.63
0.00
42.69
5.36
241
242
4.947147
AAAAGAGGCGCGTGGGCA
62.947
61.111
7.63
0.00
45.36
5.36
242
243
4.722700
AAAGAGGCGCGTGGGCAT
62.723
61.111
7.63
3.17
45.36
4.40
243
244
4.722700
AAGAGGCGCGTGGGCATT
62.723
61.111
7.63
0.00
45.36
3.56
244
245
2.813226
AAAGAGGCGCGTGGGCATTA
62.813
55.000
7.63
0.00
45.36
1.90
245
246
3.573491
GAGGCGCGTGGGCATTAC
61.573
66.667
7.63
0.00
45.36
1.89
246
247
4.096003
AGGCGCGTGGGCATTACT
62.096
61.111
8.43
0.00
45.36
2.24
247
248
3.131478
GGCGCGTGGGCATTACTT
61.131
61.111
8.43
0.00
41.77
2.24
248
249
2.100216
GCGCGTGGGCATTACTTG
59.900
61.111
8.43
0.00
39.92
3.16
249
250
2.686816
GCGCGTGGGCATTACTTGT
61.687
57.895
8.43
0.00
39.92
3.16
250
251
1.873165
CGCGTGGGCATTACTTGTT
59.127
52.632
0.00
0.00
39.92
2.83
251
252
0.239879
CGCGTGGGCATTACTTGTTT
59.760
50.000
0.00
0.00
39.92
2.83
252
253
1.335506
CGCGTGGGCATTACTTGTTTT
60.336
47.619
0.00
0.00
39.92
2.43
253
254
2.058057
GCGTGGGCATTACTTGTTTTG
58.942
47.619
0.00
0.00
39.62
2.44
254
255
2.544903
GCGTGGGCATTACTTGTTTTGT
60.545
45.455
0.00
0.00
39.62
2.83
255
256
3.305110
CGTGGGCATTACTTGTTTTGTC
58.695
45.455
0.00
0.00
0.00
3.18
256
257
3.649073
GTGGGCATTACTTGTTTTGTCC
58.351
45.455
0.00
0.00
34.40
4.02
257
258
3.068873
GTGGGCATTACTTGTTTTGTCCA
59.931
43.478
5.30
5.30
41.34
4.02
258
259
3.068873
TGGGCATTACTTGTTTTGTCCAC
59.931
43.478
5.30
0.00
38.86
4.02
259
260
3.068873
GGGCATTACTTGTTTTGTCCACA
59.931
43.478
0.00
0.00
33.99
4.17
260
261
4.048504
GGCATTACTTGTTTTGTCCACAC
58.951
43.478
0.00
0.00
0.00
3.82
261
262
3.728718
GCATTACTTGTTTTGTCCACACG
59.271
43.478
0.00
0.00
0.00
4.49
262
263
4.732355
GCATTACTTGTTTTGTCCACACGT
60.732
41.667
0.00
0.00
31.97
4.49
263
264
5.504337
GCATTACTTGTTTTGTCCACACGTA
60.504
40.000
0.00
0.00
30.02
3.57
264
265
5.721876
TTACTTGTTTTGTCCACACGTAG
57.278
39.130
0.00
0.00
32.34
3.51
265
266
2.940410
ACTTGTTTTGTCCACACGTAGG
59.060
45.455
0.00
0.00
0.00
3.18
266
267
1.301423
TGTTTTGTCCACACGTAGGC
58.699
50.000
1.45
0.00
0.00
3.93
267
268
0.233848
GTTTTGTCCACACGTAGGCG
59.766
55.000
1.45
0.00
44.93
5.52
281
282
4.101448
GGCGTGTGGGCTGATCCT
62.101
66.667
0.00
0.00
38.40
3.24
282
283
2.512515
GCGTGTGGGCTGATCCTC
60.513
66.667
0.00
0.00
34.39
3.71
283
284
2.187946
CGTGTGGGCTGATCCTCC
59.812
66.667
0.00
0.00
34.39
4.30
284
285
2.659063
CGTGTGGGCTGATCCTCCA
61.659
63.158
3.20
0.00
34.39
3.86
285
286
1.685224
GTGTGGGCTGATCCTCCAA
59.315
57.895
3.20
0.00
34.39
3.53
286
287
0.038166
GTGTGGGCTGATCCTCCAAA
59.962
55.000
3.20
0.00
34.39
3.28
287
288
0.776810
TGTGGGCTGATCCTCCAAAA
59.223
50.000
3.20
0.00
34.39
2.44
288
289
1.177401
GTGGGCTGATCCTCCAAAAC
58.823
55.000
3.20
0.00
34.39
2.43
289
290
0.776810
TGGGCTGATCCTCCAAAACA
59.223
50.000
3.20
0.00
34.39
2.83
290
291
1.177401
GGGCTGATCCTCCAAAACAC
58.823
55.000
3.20
0.00
34.39
3.32
291
292
1.177401
GGCTGATCCTCCAAAACACC
58.823
55.000
0.00
0.00
0.00
4.16
292
293
1.547675
GGCTGATCCTCCAAAACACCA
60.548
52.381
0.00
0.00
0.00
4.17
293
294
1.541588
GCTGATCCTCCAAAACACCAC
59.458
52.381
0.00
0.00
0.00
4.16
294
295
2.862541
CTGATCCTCCAAAACACCACA
58.137
47.619
0.00
0.00
0.00
4.17
295
296
2.554032
CTGATCCTCCAAAACACCACAC
59.446
50.000
0.00
0.00
0.00
3.82
296
297
2.092158
TGATCCTCCAAAACACCACACA
60.092
45.455
0.00
0.00
0.00
3.72
297
298
2.516227
TCCTCCAAAACACCACACAA
57.484
45.000
0.00
0.00
0.00
3.33
298
299
2.808919
TCCTCCAAAACACCACACAAA
58.191
42.857
0.00
0.00
0.00
2.83
299
300
3.165875
TCCTCCAAAACACCACACAAAA
58.834
40.909
0.00
0.00
0.00
2.44
300
301
3.772025
TCCTCCAAAACACCACACAAAAT
59.228
39.130
0.00
0.00
0.00
1.82
301
302
3.870419
CCTCCAAAACACCACACAAAATG
59.130
43.478
0.00
0.00
0.00
2.32
302
303
4.502962
CTCCAAAACACCACACAAAATGT
58.497
39.130
0.00
0.00
44.81
2.71
313
314
1.039856
ACAAAATGTGTGGGCAGACC
58.960
50.000
0.00
0.00
39.72
3.85
323
324
2.437895
GGCAGACCCCTTAACGCC
60.438
66.667
0.00
0.00
0.00
5.68
324
325
2.669240
GCAGACCCCTTAACGCCT
59.331
61.111
0.00
0.00
0.00
5.52
325
326
1.619807
GGCAGACCCCTTAACGCCTA
61.620
60.000
0.00
0.00
36.58
3.93
326
327
0.461516
GCAGACCCCTTAACGCCTAC
60.462
60.000
0.00
0.00
0.00
3.18
327
328
0.899720
CAGACCCCTTAACGCCTACA
59.100
55.000
0.00
0.00
0.00
2.74
328
329
1.485066
CAGACCCCTTAACGCCTACAT
59.515
52.381
0.00
0.00
0.00
2.29
329
330
1.485066
AGACCCCTTAACGCCTACATG
59.515
52.381
0.00
0.00
0.00
3.21
330
331
1.208776
GACCCCTTAACGCCTACATGT
59.791
52.381
2.69
2.69
0.00
3.21
331
332
1.065709
ACCCCTTAACGCCTACATGTG
60.066
52.381
9.11
0.00
0.00
3.21
332
333
1.065709
CCCCTTAACGCCTACATGTGT
60.066
52.381
9.11
0.00
0.00
3.72
333
334
2.006888
CCCTTAACGCCTACATGTGTG
58.993
52.381
9.11
1.49
0.00
3.82
334
335
2.006888
CCTTAACGCCTACATGTGTGG
58.993
52.381
9.11
11.75
0.00
4.17
339
340
4.713946
CCTACATGTGTGGGCGTT
57.286
55.556
9.11
0.00
39.82
4.84
340
341
3.844911
CCTACATGTGTGGGCGTTA
57.155
52.632
9.11
0.00
39.82
3.18
341
342
2.325583
CCTACATGTGTGGGCGTTAT
57.674
50.000
9.11
0.00
39.82
1.89
342
343
2.210116
CCTACATGTGTGGGCGTTATC
58.790
52.381
9.11
0.00
39.82
1.75
343
344
2.419436
CCTACATGTGTGGGCGTTATCA
60.419
50.000
9.11
0.00
39.82
2.15
344
345
1.737838
ACATGTGTGGGCGTTATCAG
58.262
50.000
0.00
0.00
0.00
2.90
345
346
0.378257
CATGTGTGGGCGTTATCAGC
59.622
55.000
0.00
0.00
0.00
4.26
346
347
1.089481
ATGTGTGGGCGTTATCAGCG
61.089
55.000
0.00
0.00
35.00
5.18
347
348
1.740296
GTGTGGGCGTTATCAGCGT
60.740
57.895
0.00
0.00
35.00
5.07
348
349
1.739929
TGTGGGCGTTATCAGCGTG
60.740
57.895
0.00
0.00
35.00
5.34
349
350
2.817834
TGGGCGTTATCAGCGTGC
60.818
61.111
0.00
0.00
35.00
5.34
375
376
4.935205
TGTTTATCAAGATGACGGGTCAAG
59.065
41.667
5.50
0.00
43.58
3.02
377
378
5.614324
TTATCAAGATGACGGGTCAAGAT
57.386
39.130
5.50
9.33
43.58
2.40
407
408
2.034179
TGGATTGTATCTGGCGTAGTCG
59.966
50.000
0.00
0.00
40.37
4.18
429
430
4.563184
CGTGCACCTATCTTTACTTCTGTC
59.437
45.833
12.15
0.00
0.00
3.51
450
451
8.856103
TCTGTCATATAAACTCGGTTCATGATA
58.144
33.333
0.00
0.00
0.00
2.15
462
463
7.174426
ACTCGGTTCATGATAACGATGTATCTA
59.826
37.037
15.19
0.00
32.58
1.98
463
464
8.051901
TCGGTTCATGATAACGATGTATCTAT
57.948
34.615
12.11
0.00
32.58
1.98
484
485
4.849813
TCATCCATCAGTTCTGACCATT
57.150
40.909
4.58
0.00
0.00
3.16
486
487
6.312141
TCATCCATCAGTTCTGACCATTAA
57.688
37.500
4.58
0.00
0.00
1.40
495
496
9.911788
ATCAGTTCTGACCATTAAATCTACATT
57.088
29.630
4.58
0.00
0.00
2.71
537
538
5.199024
TGTGACATTTTTGCAACATAGCT
57.801
34.783
0.00
0.00
34.99
3.32
540
541
5.865552
GTGACATTTTTGCAACATAGCTCAT
59.134
36.000
0.00
0.00
34.99
2.90
553
554
7.340699
CAACATAGCTCATCGTCTATTCAAAC
58.659
38.462
0.00
0.00
0.00
2.93
586
587
5.384336
TGTTTCCTCATCTCATCCAAACAA
58.616
37.500
0.00
0.00
31.18
2.83
587
588
5.241506
TGTTTCCTCATCTCATCCAAACAAC
59.758
40.000
0.00
0.00
31.18
3.32
607
608
1.269569
CCTCAAAACAGGTTTTCGCCC
60.270
52.381
7.15
0.00
40.45
6.13
680
681
4.876107
CGGACAAAGCACCATAGAAACTAT
59.124
41.667
0.00
0.00
0.00
2.12
764
768
6.915843
CGGGCAATTTGATAGTATGTTAAACC
59.084
38.462
0.00
0.00
0.00
3.27
934
3154
1.589716
GCCAGACATCGCAAGGCTTT
61.590
55.000
0.00
0.00
42.01
3.51
949
3170
5.351458
CAAGGCTTTTAAAACTGCAAGAGT
58.649
37.500
12.58
0.00
37.43
3.24
969
3190
4.385825
AGTATTTTCTTGCTGTTCGTCCA
58.614
39.130
0.00
0.00
0.00
4.02
973
3194
0.249868
TCTTGCTGTTCGTCCACAGG
60.250
55.000
12.11
0.00
43.94
4.00
1058
3292
1.273606
CTCACTGGTGATCCTCGTGTT
59.726
52.381
3.80
0.00
39.13
3.32
1126
3372
1.303282
GGTCCATGGTGTCTTCCCC
59.697
63.158
12.58
0.00
0.00
4.81
1257
3503
2.764128
GTGATCTCCTCCCCGGCA
60.764
66.667
0.00
0.00
0.00
5.69
1489
3735
2.599281
TCGTCAGGAAGGTCGGCA
60.599
61.111
0.00
0.00
0.00
5.69
1641
3896
2.576615
GAAGTGGCTGTGAAAGAAGGT
58.423
47.619
0.00
0.00
0.00
3.50
1801
4056
3.309388
CGAGCAGAGAAAAAGAAGACGA
58.691
45.455
0.00
0.00
0.00
4.20
1847
4102
4.594920
AGATGAAGAAGAACACCTCCTGAA
59.405
41.667
0.00
0.00
0.00
3.02
2307
4597
0.599204
AAGGTCATCGTCAACGCGTT
60.599
50.000
20.79
20.79
39.60
4.84
2355
4645
1.079127
CCAACGCGGAGGAGTTCAT
60.079
57.895
12.47
0.00
33.67
2.57
2419
4712
0.541063
TGCAGTTCGAGTACCTCCCA
60.541
55.000
0.00
0.00
0.00
4.37
2485
4778
1.875813
CGTGCTGGAGCTCATCGTC
60.876
63.158
17.19
0.00
42.66
4.20
2674
4971
5.505819
GCAGCTCTCATCGTTGTATACTACA
60.506
44.000
16.04
5.47
36.79
2.74
2747
5048
4.411927
TGGGGCTTGTGTTATTGTGTTAT
58.588
39.130
0.00
0.00
0.00
1.89
2754
5055
6.920758
GCTTGTGTTATTGTGTTATTGTTGGA
59.079
34.615
0.00
0.00
0.00
3.53
2976
5311
3.559238
AGAATTGCCACGCTAAAACAG
57.441
42.857
0.00
0.00
0.00
3.16
3053
5450
5.586243
TGACATGCTAGTAGAAAAGATTGCC
59.414
40.000
0.00
0.00
0.00
4.52
3114
5511
5.812127
AGTTTTCAAGGATTTTCTGTGCAAC
59.188
36.000
0.00
0.00
37.35
4.17
3168
5565
6.865834
ATTTGTTAAGGATTTGCCATGGTA
57.134
33.333
14.67
5.86
40.02
3.25
3200
5597
8.188139
AGAAAATTGTTCGTGTTACATCAAAGT
58.812
29.630
0.00
0.00
0.00
2.66
3225
5622
3.055891
ACTGGTAAAAATTGCCATGCTCC
60.056
43.478
0.32
0.00
44.61
4.70
3226
5623
3.172339
TGGTAAAAATTGCCATGCTCCT
58.828
40.909
0.00
0.00
40.68
3.69
3269
5666
4.184629
GGATGTGTTCGCTTAGATTGACT
58.815
43.478
0.00
0.00
0.00
3.41
3270
5667
5.348986
GGATGTGTTCGCTTAGATTGACTA
58.651
41.667
0.00
0.00
0.00
2.59
3277
5674
6.072119
TGTTCGCTTAGATTGACTACTTGAGA
60.072
38.462
0.00
0.00
0.00
3.27
3292
5689
4.051922
ACTTGAGAGAACTGTTTAGTGCG
58.948
43.478
0.00
0.00
37.56
5.34
3293
5690
3.026630
TGAGAGAACTGTTTAGTGCGG
57.973
47.619
0.00
0.00
37.56
5.69
3297
5694
3.128349
GAGAACTGTTTAGTGCGGTCAA
58.872
45.455
0.00
0.00
37.56
3.18
3321
5720
3.756963
TCGTAGTCAGCTTAGATGTGTGT
59.243
43.478
0.00
0.00
0.00
3.72
3325
5724
3.321968
AGTCAGCTTAGATGTGTGTGTGA
59.678
43.478
0.00
0.00
0.00
3.58
3340
5739
4.100035
TGTGTGTGAGAGAGAACAGTGATT
59.900
41.667
0.00
0.00
0.00
2.57
3370
5769
4.447724
TGTCTTGCTTTGAGATTCGTACAC
59.552
41.667
0.00
0.00
0.00
2.90
3391
5790
5.232610
ACGGAAATTAAACGTGTCACAAA
57.767
34.783
3.42
0.00
39.64
2.83
3401
5800
1.062002
CGTGTCACAAAGTGTTCGCTT
59.938
47.619
3.42
0.00
34.79
4.68
3404
5803
4.271687
GTGTCACAAAGTGTTCGCTTAAG
58.728
43.478
0.00
0.00
34.79
1.85
3408
5807
5.451342
GTCACAAAGTGTTCGCTTAAGAAAC
59.549
40.000
6.67
10.08
34.79
2.78
3423
5822
2.907892
AGAAACCCCTCTGAGATGACA
58.092
47.619
6.17
0.00
0.00
3.58
3424
5823
2.569404
AGAAACCCCTCTGAGATGACAC
59.431
50.000
6.17
0.00
0.00
3.67
3427
5826
3.474798
ACCCCTCTGAGATGACACTAA
57.525
47.619
6.17
0.00
0.00
2.24
3431
5830
4.406972
CCCCTCTGAGATGACACTAAATCA
59.593
45.833
6.17
0.00
0.00
2.57
3434
5833
7.052873
CCCTCTGAGATGACACTAAATCATTT
58.947
38.462
6.17
0.00
36.92
2.32
3436
5835
9.605275
CCTCTGAGATGACACTAAATCATTTAA
57.395
33.333
6.17
0.00
36.92
1.52
3508
5907
9.154847
GAAAATTCCTTCAAAATACCCATTGAG
57.845
33.333
0.00
0.00
36.93
3.02
3509
5908
8.434589
AAATTCCTTCAAAATACCCATTGAGA
57.565
30.769
0.00
0.00
36.93
3.27
3522
5921
6.824305
ACCCATTGAGACAAGTTTATTCTG
57.176
37.500
0.00
0.00
0.00
3.02
3523
5922
6.542821
ACCCATTGAGACAAGTTTATTCTGA
58.457
36.000
0.00
0.00
0.00
3.27
3525
5924
7.337942
ACCCATTGAGACAAGTTTATTCTGATC
59.662
37.037
0.00
0.00
0.00
2.92
3526
5925
7.555554
CCCATTGAGACAAGTTTATTCTGATCT
59.444
37.037
0.00
0.00
0.00
2.75
3589
6074
1.154150
GCACATGCGCTCAAGGTTC
60.154
57.895
9.73
0.00
0.00
3.62
3598
6083
2.866762
GCGCTCAAGGTTCATAAGTAGG
59.133
50.000
0.00
0.00
0.00
3.18
3602
6087
5.292101
CGCTCAAGGTTCATAAGTAGGAAAG
59.708
44.000
0.00
0.00
0.00
2.62
3610
6095
1.492764
TAAGTAGGAAAGGCTCCCCG
58.507
55.000
2.66
0.00
46.81
5.73
3612
6097
2.366435
TAGGAAAGGCTCCCCGGG
60.366
66.667
15.80
15.80
46.81
5.73
3618
6103
4.658786
AGGCTCCCCGGGTTCAGT
62.659
66.667
21.85
0.00
35.76
3.41
3623
6108
3.307906
CCCCGGGTTCAGTCGACA
61.308
66.667
21.85
0.00
0.00
4.35
3629
6114
1.746517
GGTTCAGTCGACACCACCT
59.253
57.895
19.50
0.00
0.00
4.00
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
11
12
1.338973
CATGGTTGCTCAACTGCAGTT
59.661
47.619
26.36
26.36
44.27
3.16
12
13
0.956633
CATGGTTGCTCAACTGCAGT
59.043
50.000
15.25
15.25
44.27
4.40
13
14
0.242825
CCATGGTTGCTCAACTGCAG
59.757
55.000
13.48
13.48
44.27
4.41
14
15
1.808531
GCCATGGTTGCTCAACTGCA
61.809
55.000
14.67
3.93
40.94
4.41
15
16
1.080298
GCCATGGTTGCTCAACTGC
60.080
57.895
14.67
6.92
40.94
4.40
16
17
0.675083
TTGCCATGGTTGCTCAACTG
59.325
50.000
14.67
4.33
40.94
3.16
17
18
0.675633
GTTGCCATGGTTGCTCAACT
59.324
50.000
19.25
0.00
40.94
3.16
18
19
0.675633
AGTTGCCATGGTTGCTCAAC
59.324
50.000
19.02
19.02
40.45
3.18
19
20
0.675083
CAGTTGCCATGGTTGCTCAA
59.325
50.000
14.67
5.59
0.00
3.02
20
21
0.467844
ACAGTTGCCATGGTTGCTCA
60.468
50.000
14.67
0.00
0.00
4.26
21
22
1.470098
CTACAGTTGCCATGGTTGCTC
59.530
52.381
14.67
0.00
0.00
4.26
22
23
1.202927
ACTACAGTTGCCATGGTTGCT
60.203
47.619
14.67
5.95
0.00
3.91
23
24
1.247567
ACTACAGTTGCCATGGTTGC
58.752
50.000
14.67
3.52
0.00
4.17
34
35
2.870435
GCCATGTCGGACAACTACAGTT
60.870
50.000
15.72
0.00
36.12
3.16
35
36
1.337823
GCCATGTCGGACAACTACAGT
60.338
52.381
15.72
0.00
36.56
3.55
36
37
1.337728
TGCCATGTCGGACAACTACAG
60.338
52.381
15.72
1.98
36.56
2.74
37
38
0.682292
TGCCATGTCGGACAACTACA
59.318
50.000
15.72
8.46
36.56
2.74
38
39
1.463444
GTTGCCATGTCGGACAACTAC
59.537
52.381
15.72
10.65
43.12
2.73
39
40
1.803334
GTTGCCATGTCGGACAACTA
58.197
50.000
15.72
2.39
43.12
2.24
40
41
2.629002
GTTGCCATGTCGGACAACT
58.371
52.632
15.72
0.00
43.12
3.16
41
42
0.238289
CAGTTGCCATGTCGGACAAC
59.762
55.000
15.72
8.30
45.02
3.32
42
43
1.514678
GCAGTTGCCATGTCGGACAA
61.515
55.000
15.72
0.00
36.56
3.18
43
44
1.965930
GCAGTTGCCATGTCGGACA
60.966
57.895
14.01
14.01
36.56
4.02
44
45
1.915614
CTGCAGTTGCCATGTCGGAC
61.916
60.000
5.25
0.00
41.18
4.79
45
46
1.672030
CTGCAGTTGCCATGTCGGA
60.672
57.895
5.25
0.00
41.18
4.55
46
47
1.518056
AACTGCAGTTGCCATGTCGG
61.518
55.000
30.66
0.00
41.18
4.79
47
48
1.155889
TAACTGCAGTTGCCATGTCG
58.844
50.000
36.50
0.67
41.18
4.35
48
49
3.641437
TTTAACTGCAGTTGCCATGTC
57.359
42.857
36.50
0.00
41.18
3.06
49
50
3.573538
TCATTTAACTGCAGTTGCCATGT
59.426
39.130
36.50
15.57
41.18
3.21
50
51
4.177165
TCATTTAACTGCAGTTGCCATG
57.823
40.909
36.50
30.50
41.18
3.66
51
52
4.039004
TGTTCATTTAACTGCAGTTGCCAT
59.961
37.500
36.50
23.31
38.90
4.40
52
53
3.382865
TGTTCATTTAACTGCAGTTGCCA
59.617
39.130
36.50
22.26
38.90
4.92
53
54
3.976169
TGTTCATTTAACTGCAGTTGCC
58.024
40.909
36.50
17.24
38.90
4.52
54
55
4.445385
CCTTGTTCATTTAACTGCAGTTGC
59.555
41.667
36.50
19.02
38.90
4.17
55
56
5.830912
TCCTTGTTCATTTAACTGCAGTTG
58.169
37.500
36.50
23.43
38.90
3.16
56
57
6.321181
TCTTCCTTGTTCATTTAACTGCAGTT
59.679
34.615
32.97
32.97
38.99
3.16
57
58
5.827797
TCTTCCTTGTTCATTTAACTGCAGT
59.172
36.000
15.25
15.25
38.99
4.40
58
59
6.317789
TCTTCCTTGTTCATTTAACTGCAG
57.682
37.500
13.48
13.48
38.99
4.41
59
60
5.241506
CCTCTTCCTTGTTCATTTAACTGCA
59.758
40.000
0.00
0.00
38.99
4.41
60
61
5.335976
CCCTCTTCCTTGTTCATTTAACTGC
60.336
44.000
0.00
0.00
38.99
4.40
61
62
5.770162
ACCCTCTTCCTTGTTCATTTAACTG
59.230
40.000
0.00
0.00
38.99
3.16
62
63
5.953571
ACCCTCTTCCTTGTTCATTTAACT
58.046
37.500
0.00
0.00
38.99
2.24
63
64
5.183331
GGACCCTCTTCCTTGTTCATTTAAC
59.817
44.000
0.00
0.00
34.15
2.01
64
65
5.163034
TGGACCCTCTTCCTTGTTCATTTAA
60.163
40.000
0.00
0.00
36.51
1.52
65
66
4.352595
TGGACCCTCTTCCTTGTTCATTTA
59.647
41.667
0.00
0.00
36.51
1.40
66
67
3.140144
TGGACCCTCTTCCTTGTTCATTT
59.860
43.478
0.00
0.00
36.51
2.32
67
68
2.716424
TGGACCCTCTTCCTTGTTCATT
59.284
45.455
0.00
0.00
36.51
2.57
68
69
2.307098
CTGGACCCTCTTCCTTGTTCAT
59.693
50.000
0.00
0.00
36.51
2.57
69
70
1.699634
CTGGACCCTCTTCCTTGTTCA
59.300
52.381
0.00
0.00
36.51
3.18
70
71
1.978580
TCTGGACCCTCTTCCTTGTTC
59.021
52.381
0.00
0.00
36.51
3.18
71
72
1.700186
GTCTGGACCCTCTTCCTTGTT
59.300
52.381
0.00
0.00
36.51
2.83
72
73
1.353091
GTCTGGACCCTCTTCCTTGT
58.647
55.000
0.00
0.00
36.51
3.16
73
74
0.615850
GGTCTGGACCCTCTTCCTTG
59.384
60.000
8.48
0.00
45.68
3.61
74
75
3.090504
GGTCTGGACCCTCTTCCTT
57.909
57.895
8.48
0.00
45.68
3.36
75
76
4.899243
GGTCTGGACCCTCTTCCT
57.101
61.111
8.48
0.00
45.68
3.36
87
88
1.246056
CCCACAGTTGCCATGGTCTG
61.246
60.000
22.58
22.58
0.00
3.51
88
89
1.075482
CCCACAGTTGCCATGGTCT
59.925
57.895
14.67
7.00
0.00
3.85
89
90
1.978617
CCCCACAGTTGCCATGGTC
60.979
63.158
14.67
6.41
0.00
4.02
90
91
2.118076
CCCCACAGTTGCCATGGT
59.882
61.111
14.67
0.00
0.00
3.55
91
92
1.978617
GTCCCCACAGTTGCCATGG
60.979
63.158
7.63
7.63
0.00
3.66
92
93
2.334946
CGTCCCCACAGTTGCCATG
61.335
63.158
0.00
0.00
0.00
3.66
93
94
2.034066
CGTCCCCACAGTTGCCAT
59.966
61.111
0.00
0.00
0.00
4.40
94
95
4.947147
GCGTCCCCACAGTTGCCA
62.947
66.667
0.00
0.00
0.00
4.92
95
96
4.643387
AGCGTCCCCACAGTTGCC
62.643
66.667
0.00
0.00
0.00
4.52
96
97
3.357079
CAGCGTCCCCACAGTTGC
61.357
66.667
0.00
0.00
0.00
4.17
97
98
2.669569
CCAGCGTCCCCACAGTTG
60.670
66.667
0.00
0.00
0.00
3.16
98
99
3.168528
ACCAGCGTCCCCACAGTT
61.169
61.111
0.00
0.00
0.00
3.16
99
100
3.941188
CACCAGCGTCCCCACAGT
61.941
66.667
0.00
0.00
0.00
3.55
100
101
3.625897
TCACCAGCGTCCCCACAG
61.626
66.667
0.00
0.00
0.00
3.66
101
102
3.936203
GTCACCAGCGTCCCCACA
61.936
66.667
0.00
0.00
0.00
4.17
102
103
3.626924
AGTCACCAGCGTCCCCAC
61.627
66.667
0.00
0.00
0.00
4.61
103
104
3.625897
CAGTCACCAGCGTCCCCA
61.626
66.667
0.00
0.00
0.00
4.96
104
105
3.591254
GACAGTCACCAGCGTCCCC
62.591
68.421
0.00
0.00
0.00
4.81
105
106
2.048127
GACAGTCACCAGCGTCCC
60.048
66.667
0.00
0.00
0.00
4.46
106
107
1.664965
GTGACAGTCACCAGCGTCC
60.665
63.158
21.52
0.00
41.37
4.79
107
108
2.016704
CGTGACAGTCACCAGCGTC
61.017
63.158
25.11
1.83
44.20
5.19
108
109
2.027605
CGTGACAGTCACCAGCGT
59.972
61.111
25.11
0.00
44.20
5.07
109
110
3.406361
GCGTGACAGTCACCAGCG
61.406
66.667
25.11
15.88
44.20
5.18
110
111
3.406361
CGCGTGACAGTCACCAGC
61.406
66.667
25.11
21.62
44.20
4.85
111
112
2.734723
CCGCGTGACAGTCACCAG
60.735
66.667
25.11
18.78
44.20
4.00
112
113
4.961511
GCCGCGTGACAGTCACCA
62.962
66.667
25.11
0.00
44.20
4.17
125
126
4.865761
TATGGTCTCGCACGCCGC
62.866
66.667
0.00
0.00
36.73
6.53
126
127
2.202690
TTATGGTCTCGCACGCCG
60.203
61.111
0.00
0.00
38.61
6.46
127
128
1.883084
CCTTATGGTCTCGCACGCC
60.883
63.158
0.00
0.00
0.00
5.68
128
129
0.101759
TACCTTATGGTCTCGCACGC
59.898
55.000
3.06
0.00
44.78
5.34
129
130
1.269102
CCTACCTTATGGTCTCGCACG
60.269
57.143
3.06
0.00
44.78
5.34
130
131
2.029623
TCCTACCTTATGGTCTCGCAC
58.970
52.381
3.06
0.00
44.78
5.34
131
132
2.307768
CTCCTACCTTATGGTCTCGCA
58.692
52.381
3.06
0.00
44.78
5.10
132
133
1.614413
CCTCCTACCTTATGGTCTCGC
59.386
57.143
3.06
0.00
44.78
5.03
133
134
1.614413
GCCTCCTACCTTATGGTCTCG
59.386
57.143
3.06
0.00
44.78
4.04
134
135
1.972075
GGCCTCCTACCTTATGGTCTC
59.028
57.143
3.06
0.00
44.78
3.36
135
136
1.581149
AGGCCTCCTACCTTATGGTCT
59.419
52.381
0.00
0.00
44.78
3.85
136
137
1.694696
CAGGCCTCCTACCTTATGGTC
59.305
57.143
0.00
0.00
44.78
4.02
138
139
1.694696
GTCAGGCCTCCTACCTTATGG
59.305
57.143
0.00
0.00
34.42
2.74
139
140
1.341531
CGTCAGGCCTCCTACCTTATG
59.658
57.143
0.00
0.00
34.42
1.90
140
141
1.063114
ACGTCAGGCCTCCTACCTTAT
60.063
52.381
0.00
0.00
34.42
1.73
141
142
0.333993
ACGTCAGGCCTCCTACCTTA
59.666
55.000
0.00
0.00
34.42
2.69
142
143
0.333993
TACGTCAGGCCTCCTACCTT
59.666
55.000
0.00
0.00
34.42
3.50
143
144
0.395448
GTACGTCAGGCCTCCTACCT
60.395
60.000
0.00
0.00
38.35
3.08
144
145
1.722636
CGTACGTCAGGCCTCCTACC
61.723
65.000
0.00
0.00
29.64
3.18
145
146
1.722636
CCGTACGTCAGGCCTCCTAC
61.723
65.000
15.21
0.00
29.64
3.18
146
147
1.452651
CCGTACGTCAGGCCTCCTA
60.453
63.158
15.21
0.00
29.64
2.94
147
148
2.754658
CCGTACGTCAGGCCTCCT
60.755
66.667
15.21
0.00
0.00
3.69
148
149
3.834799
CCCGTACGTCAGGCCTCC
61.835
72.222
15.21
0.00
0.00
4.30
149
150
4.509737
GCCCGTACGTCAGGCCTC
62.510
72.222
19.62
0.00
41.00
4.70
153
154
4.047059
ACACGCCCGTACGTCAGG
62.047
66.667
15.21
9.59
46.34
3.86
154
155
2.803670
CACACGCCCGTACGTCAG
60.804
66.667
15.21
7.02
46.34
3.51
155
156
4.345962
CCACACGCCCGTACGTCA
62.346
66.667
15.21
0.00
46.34
4.35
166
167
1.865865
AAATAGATAGCGCCCACACG
58.134
50.000
2.29
0.00
0.00
4.49
167
168
2.287009
GCAAAATAGATAGCGCCCACAC
60.287
50.000
2.29
0.00
0.00
3.82
168
169
1.946768
GCAAAATAGATAGCGCCCACA
59.053
47.619
2.29
0.00
0.00
4.17
169
170
1.266989
GGCAAAATAGATAGCGCCCAC
59.733
52.381
2.29
0.00
33.31
4.61
170
171
1.604604
GGCAAAATAGATAGCGCCCA
58.395
50.000
2.29
0.00
33.31
5.36
172
173
1.266989
GTGGGCAAAATAGATAGCGCC
59.733
52.381
2.29
0.00
38.93
6.53
173
174
1.946768
TGTGGGCAAAATAGATAGCGC
59.053
47.619
0.00
0.00
39.95
5.92
174
175
2.032894
CGTGTGGGCAAAATAGATAGCG
60.033
50.000
0.00
0.00
0.00
4.26
175
176
2.943033
ACGTGTGGGCAAAATAGATAGC
59.057
45.455
0.00
0.00
0.00
2.97
176
177
4.750098
CCTACGTGTGGGCAAAATAGATAG
59.250
45.833
0.00
0.00
0.00
2.08
177
178
4.699637
CCTACGTGTGGGCAAAATAGATA
58.300
43.478
0.00
0.00
0.00
1.98
178
179
3.541632
CCTACGTGTGGGCAAAATAGAT
58.458
45.455
0.00
0.00
0.00
1.98
179
180
2.980568
CCTACGTGTGGGCAAAATAGA
58.019
47.619
0.00
0.00
0.00
1.98
188
189
1.754803
TCTCTTATGCCTACGTGTGGG
59.245
52.381
0.00
0.00
0.00
4.61
189
190
2.688446
TCTCTCTTATGCCTACGTGTGG
59.312
50.000
0.00
0.98
0.00
4.17
190
191
4.371855
TTCTCTCTTATGCCTACGTGTG
57.628
45.455
0.00
0.00
0.00
3.82
191
192
5.593010
GATTTCTCTCTTATGCCTACGTGT
58.407
41.667
0.00
0.00
0.00
4.49
192
193
4.677378
CGATTTCTCTCTTATGCCTACGTG
59.323
45.833
0.00
0.00
0.00
4.49
193
194
4.793353
GCGATTTCTCTCTTATGCCTACGT
60.793
45.833
0.00
0.00
0.00
3.57
194
195
3.670991
GCGATTTCTCTCTTATGCCTACG
59.329
47.826
0.00
0.00
0.00
3.51
195
196
3.670991
CGCGATTTCTCTCTTATGCCTAC
59.329
47.826
0.00
0.00
0.00
3.18
196
197
3.568430
TCGCGATTTCTCTCTTATGCCTA
59.432
43.478
3.71
0.00
0.00
3.93
197
198
2.362397
TCGCGATTTCTCTCTTATGCCT
59.638
45.455
3.71
0.00
0.00
4.75
198
199
2.728839
CTCGCGATTTCTCTCTTATGCC
59.271
50.000
10.36
0.00
0.00
4.40
199
200
3.633235
TCTCGCGATTTCTCTCTTATGC
58.367
45.455
10.36
0.00
0.00
3.14
200
201
6.575083
TTTTCTCGCGATTTCTCTCTTATG
57.425
37.500
10.36
0.00
0.00
1.90
223
224
3.670377
GCCCACGCGCCTCTTTTT
61.670
61.111
5.73
0.00
0.00
1.94
224
225
4.947147
TGCCCACGCGCCTCTTTT
62.947
61.111
5.73
0.00
38.08
2.27
225
226
2.813226
TAATGCCCACGCGCCTCTTT
62.813
55.000
5.73
0.43
38.08
2.52
226
227
3.323758
TAATGCCCACGCGCCTCTT
62.324
57.895
5.73
0.00
38.08
2.85
227
228
3.781307
TAATGCCCACGCGCCTCT
61.781
61.111
5.73
0.00
38.08
3.69
228
229
3.573491
GTAATGCCCACGCGCCTC
61.573
66.667
5.73
0.00
38.08
4.70
229
230
3.622060
AAGTAATGCCCACGCGCCT
62.622
57.895
5.73
0.00
38.08
5.52
230
231
3.131478
AAGTAATGCCCACGCGCC
61.131
61.111
5.73
0.00
38.08
6.53
231
232
2.100216
CAAGTAATGCCCACGCGC
59.900
61.111
5.73
0.00
38.08
6.86
232
233
0.239879
AAACAAGTAATGCCCACGCG
59.760
50.000
3.53
3.53
38.08
6.01
233
234
2.058057
CAAAACAAGTAATGCCCACGC
58.942
47.619
0.00
0.00
0.00
5.34
234
235
3.305110
GACAAAACAAGTAATGCCCACG
58.695
45.455
0.00
0.00
0.00
4.94
235
236
3.068873
TGGACAAAACAAGTAATGCCCAC
59.931
43.478
0.00
0.00
0.00
4.61
236
237
3.068873
GTGGACAAAACAAGTAATGCCCA
59.931
43.478
0.00
0.00
0.00
5.36
237
238
3.068873
TGTGGACAAAACAAGTAATGCCC
59.931
43.478
0.00
0.00
0.00
5.36
238
239
4.048504
GTGTGGACAAAACAAGTAATGCC
58.951
43.478
0.00
0.00
0.00
4.40
239
240
3.728718
CGTGTGGACAAAACAAGTAATGC
59.271
43.478
0.00
0.00
0.00
3.56
240
241
4.915704
ACGTGTGGACAAAACAAGTAATG
58.084
39.130
0.00
0.00
38.27
1.90
241
242
5.237779
CCTACGTGTGGACAAAACAAGTAAT
59.762
40.000
0.00
0.00
40.39
1.89
242
243
4.571580
CCTACGTGTGGACAAAACAAGTAA
59.428
41.667
0.00
0.00
40.39
2.24
243
244
4.121317
CCTACGTGTGGACAAAACAAGTA
58.879
43.478
0.00
3.11
40.14
2.24
244
245
2.940410
CCTACGTGTGGACAAAACAAGT
59.060
45.455
0.00
1.14
41.91
3.16
245
246
2.286772
GCCTACGTGTGGACAAAACAAG
60.287
50.000
12.69
0.00
33.85
3.16
246
247
1.671845
GCCTACGTGTGGACAAAACAA
59.328
47.619
12.69
0.00
0.00
2.83
247
248
1.301423
GCCTACGTGTGGACAAAACA
58.699
50.000
12.69
0.00
0.00
2.83
248
249
0.233848
CGCCTACGTGTGGACAAAAC
59.766
55.000
12.69
0.00
33.53
2.43
249
250
2.607457
CGCCTACGTGTGGACAAAA
58.393
52.632
12.69
0.00
33.53
2.44
250
251
4.347096
CGCCTACGTGTGGACAAA
57.653
55.556
12.69
0.00
33.53
2.83
261
262
1.521681
GATCAGCCCACACGCCTAC
60.522
63.158
0.00
0.00
0.00
3.18
262
263
2.731571
GGATCAGCCCACACGCCTA
61.732
63.158
0.00
0.00
0.00
3.93
263
264
4.101448
GGATCAGCCCACACGCCT
62.101
66.667
0.00
0.00
0.00
5.52
264
265
4.101448
AGGATCAGCCCACACGCC
62.101
66.667
0.00
0.00
37.37
5.68
265
266
2.512515
GAGGATCAGCCCACACGC
60.513
66.667
0.00
0.00
37.37
5.34
266
267
2.184020
TTGGAGGATCAGCCCACACG
62.184
60.000
0.00
0.00
36.25
4.49
267
268
0.038166
TTTGGAGGATCAGCCCACAC
59.962
55.000
0.00
0.00
36.25
3.82
268
269
0.776810
TTTTGGAGGATCAGCCCACA
59.223
50.000
0.00
0.00
36.25
4.17
269
270
1.177401
GTTTTGGAGGATCAGCCCAC
58.823
55.000
0.00
0.00
36.25
4.61
270
271
0.776810
TGTTTTGGAGGATCAGCCCA
59.223
50.000
0.00
0.00
36.25
5.36
271
272
1.177401
GTGTTTTGGAGGATCAGCCC
58.823
55.000
0.00
0.00
36.25
5.19
272
273
1.177401
GGTGTTTTGGAGGATCAGCC
58.823
55.000
0.00
0.00
36.25
4.85
273
274
1.541588
GTGGTGTTTTGGAGGATCAGC
59.458
52.381
0.00
0.00
36.25
4.26
274
275
2.554032
GTGTGGTGTTTTGGAGGATCAG
59.446
50.000
0.00
0.00
36.25
2.90
275
276
2.092158
TGTGTGGTGTTTTGGAGGATCA
60.092
45.455
0.00
0.00
36.25
2.92
276
277
2.582052
TGTGTGGTGTTTTGGAGGATC
58.418
47.619
0.00
0.00
0.00
3.36
277
278
2.746279
TGTGTGGTGTTTTGGAGGAT
57.254
45.000
0.00
0.00
0.00
3.24
278
279
2.516227
TTGTGTGGTGTTTTGGAGGA
57.484
45.000
0.00
0.00
0.00
3.71
279
280
3.601443
TTTTGTGTGGTGTTTTGGAGG
57.399
42.857
0.00
0.00
0.00
4.30
280
281
4.502962
ACATTTTGTGTGGTGTTTTGGAG
58.497
39.130
0.00
0.00
40.28
3.86
281
282
4.543590
ACATTTTGTGTGGTGTTTTGGA
57.456
36.364
0.00
0.00
40.28
3.53
294
295
1.039856
GGTCTGCCCACACATTTTGT
58.960
50.000
0.00
0.00
39.97
2.83
295
296
3.892200
GGTCTGCCCACACATTTTG
57.108
52.632
0.00
0.00
0.00
2.44
306
307
1.619807
TAGGCGTTAAGGGGTCTGCC
61.620
60.000
0.00
0.00
42.76
4.85
307
308
0.461516
GTAGGCGTTAAGGGGTCTGC
60.462
60.000
0.00
0.00
0.00
4.26
308
309
0.899720
TGTAGGCGTTAAGGGGTCTG
59.100
55.000
0.00
0.00
0.00
3.51
309
310
1.485066
CATGTAGGCGTTAAGGGGTCT
59.515
52.381
0.00
0.00
0.00
3.85
310
311
1.208776
ACATGTAGGCGTTAAGGGGTC
59.791
52.381
0.00
0.00
0.00
4.46
311
312
1.065709
CACATGTAGGCGTTAAGGGGT
60.066
52.381
0.00
0.00
0.00
4.95
312
313
1.065709
ACACATGTAGGCGTTAAGGGG
60.066
52.381
0.00
0.00
0.00
4.79
313
314
2.006888
CACACATGTAGGCGTTAAGGG
58.993
52.381
0.00
0.00
0.00
3.95
314
315
2.006888
CCACACATGTAGGCGTTAAGG
58.993
52.381
0.00
0.00
0.00
2.69
315
316
2.006888
CCCACACATGTAGGCGTTAAG
58.993
52.381
10.31
0.00
0.00
1.85
316
317
1.946747
GCCCACACATGTAGGCGTTAA
60.947
52.381
15.57
0.00
42.49
2.01
317
318
0.391927
GCCCACACATGTAGGCGTTA
60.392
55.000
15.57
0.00
42.49
3.18
318
319
1.674322
GCCCACACATGTAGGCGTT
60.674
57.895
15.57
0.00
42.49
4.84
319
320
2.046314
GCCCACACATGTAGGCGT
60.046
61.111
15.57
0.00
42.49
5.68
322
323
2.210116
GATAACGCCCACACATGTAGG
58.790
52.381
0.00
3.53
0.00
3.18
323
324
2.866156
CTGATAACGCCCACACATGTAG
59.134
50.000
0.00
0.00
0.00
2.74
324
325
2.899976
CTGATAACGCCCACACATGTA
58.100
47.619
0.00
0.00
0.00
2.29
325
326
1.737838
CTGATAACGCCCACACATGT
58.262
50.000
0.00
0.00
0.00
3.21
326
327
0.378257
GCTGATAACGCCCACACATG
59.622
55.000
0.00
0.00
0.00
3.21
327
328
1.089481
CGCTGATAACGCCCACACAT
61.089
55.000
0.00
0.00
0.00
3.21
328
329
1.739929
CGCTGATAACGCCCACACA
60.740
57.895
0.00
0.00
0.00
3.72
329
330
1.740296
ACGCTGATAACGCCCACAC
60.740
57.895
0.00
0.00
0.00
3.82
330
331
1.739929
CACGCTGATAACGCCCACA
60.740
57.895
0.00
0.00
0.00
4.17
331
332
3.089784
CACGCTGATAACGCCCAC
58.910
61.111
0.00
0.00
0.00
4.61
332
333
2.817834
GCACGCTGATAACGCCCA
60.818
61.111
0.00
0.00
0.00
5.36
333
334
1.714899
AATGCACGCTGATAACGCCC
61.715
55.000
0.00
0.00
0.00
6.13
334
335
0.589729
CAATGCACGCTGATAACGCC
60.590
55.000
0.00
0.00
0.00
5.68
335
336
0.096976
ACAATGCACGCTGATAACGC
59.903
50.000
0.00
0.00
0.00
4.84
336
337
2.525750
AACAATGCACGCTGATAACG
57.474
45.000
0.00
0.00
0.00
3.18
337
338
5.568482
TGATAAACAATGCACGCTGATAAC
58.432
37.500
0.00
0.00
0.00
1.89
338
339
5.809719
TGATAAACAATGCACGCTGATAA
57.190
34.783
0.00
0.00
0.00
1.75
339
340
5.584251
TCTTGATAAACAATGCACGCTGATA
59.416
36.000
0.00
0.00
37.88
2.15
340
341
4.395854
TCTTGATAAACAATGCACGCTGAT
59.604
37.500
0.00
0.00
37.88
2.90
341
342
3.750652
TCTTGATAAACAATGCACGCTGA
59.249
39.130
0.00
0.00
37.88
4.26
342
343
4.082274
TCTTGATAAACAATGCACGCTG
57.918
40.909
0.00
0.00
37.88
5.18
343
344
4.395854
TCATCTTGATAAACAATGCACGCT
59.604
37.500
0.00
0.00
37.88
5.07
344
345
4.496895
GTCATCTTGATAAACAATGCACGC
59.503
41.667
0.00
0.00
37.88
5.34
345
346
4.725280
CGTCATCTTGATAAACAATGCACG
59.275
41.667
0.00
0.00
37.88
5.34
346
347
5.030295
CCGTCATCTTGATAAACAATGCAC
58.970
41.667
0.00
0.00
37.88
4.57
347
348
4.096231
CCCGTCATCTTGATAAACAATGCA
59.904
41.667
0.00
0.00
37.88
3.96
348
349
4.096382
ACCCGTCATCTTGATAAACAATGC
59.904
41.667
0.00
0.00
37.88
3.56
349
350
5.353956
TGACCCGTCATCTTGATAAACAATG
59.646
40.000
0.00
0.00
34.76
2.82
375
376
8.230486
CGCCAGATACAATCCAAAATTACTATC
58.770
37.037
0.00
0.00
0.00
2.08
377
378
7.051623
ACGCCAGATACAATCCAAAATTACTA
58.948
34.615
0.00
0.00
0.00
1.82
397
398
1.317431
ATAGGTGCACGACTACGCCA
61.317
55.000
11.45
0.00
43.96
5.69
407
408
5.479306
TGACAGAAGTAAAGATAGGTGCAC
58.521
41.667
8.80
8.80
0.00
4.57
429
430
8.515473
TCGTTATCATGAACCGAGTTTATATG
57.485
34.615
0.00
0.00
0.00
1.78
450
451
7.473735
ACTGATGGATGATAGATACATCGTT
57.526
36.000
0.00
0.00
43.24
3.85
462
463
5.384145
AATGGTCAGAACTGATGGATGAT
57.616
39.130
7.77
0.00
42.18
2.45
463
464
4.849813
AATGGTCAGAACTGATGGATGA
57.150
40.909
7.77
0.00
42.18
2.92
563
564
4.984295
TGTTTGGATGAGATGAGGAAACA
58.016
39.130
0.00
0.00
31.29
2.83
564
565
5.335976
GGTTGTTTGGATGAGATGAGGAAAC
60.336
44.000
0.00
0.00
0.00
2.78
572
573
5.598005
TGTTTTGAGGTTGTTTGGATGAGAT
59.402
36.000
0.00
0.00
0.00
2.75
573
574
4.952957
TGTTTTGAGGTTGTTTGGATGAGA
59.047
37.500
0.00
0.00
0.00
3.27
575
576
4.099266
CCTGTTTTGAGGTTGTTTGGATGA
59.901
41.667
0.00
0.00
0.00
2.92
587
588
1.269569
GGGCGAAAACCTGTTTTGAGG
60.270
52.381
12.39
0.00
42.26
3.86
631
632
4.148079
TGCTCTATGACCTGAGACTATGG
58.852
47.826
0.00
0.00
32.44
2.74
680
681
5.879223
TCACAAACTTACGGGAAAAACACTA
59.121
36.000
0.00
0.00
0.00
2.74
732
733
3.689649
ACTATCAAATTGCCCGTGAGTTC
59.310
43.478
0.00
0.00
0.00
3.01
872
3092
8.976353
TGCACCATGGTAGTATGAATTAAATTT
58.024
29.630
19.28
0.00
0.00
1.82
893
3113
2.484264
GGTATCAACTGTCAACTGCACC
59.516
50.000
0.00
0.00
0.00
5.01
949
3170
4.130857
TGTGGACGAACAGCAAGAAAATA
58.869
39.130
0.00
0.00
0.00
1.40
969
3190
2.183679
TGGCTTGGTTTGTTTTCCTGT
58.816
42.857
0.00
0.00
0.00
4.00
973
3194
3.855858
TGTCTTGGCTTGGTTTGTTTTC
58.144
40.909
0.00
0.00
0.00
2.29
1058
3292
3.880490
TGAAGTTTTGCGGCTAAGAAAGA
59.120
39.130
0.00
0.00
0.00
2.52
1126
3372
0.250234
TGGAGAAGGTTGCCGATCAG
59.750
55.000
0.00
0.00
0.00
2.90
1801
4056
4.395583
GGTCTTCGTCGTCGCCGT
62.396
66.667
0.00
0.00
36.96
5.68
1810
4065
0.611062
TCATCTCCGGTGGTCTTCGT
60.611
55.000
0.00
0.00
0.00
3.85
2339
4629
1.741770
GCATGAACTCCTCCGCGTT
60.742
57.895
4.92
0.00
0.00
4.84
2355
4645
3.744719
CGTCGAACCTCTCCGGCA
61.745
66.667
0.00
0.00
35.61
5.69
2419
4712
1.833049
CCTCCTCCCGCTACCGAAT
60.833
63.158
0.00
0.00
36.29
3.34
2485
4778
1.892468
AGTAGTAGAAAAGTCGCGCG
58.108
50.000
26.76
26.76
0.00
6.86
2495
4788
3.015327
GGCTCCAGTCGAAGTAGTAGAA
58.985
50.000
0.00
0.00
0.00
2.10
2721
5022
2.037121
ACAATAACACAAGCCCCAAAGC
59.963
45.455
0.00
0.00
0.00
3.51
2891
5201
3.738982
TCGCCATGTTTAATCGGATGAT
58.261
40.909
0.00
0.00
35.98
2.45
2901
5211
1.134818
ACTCGCAGATCGCCATGTTTA
60.135
47.619
4.37
0.00
37.30
2.01
2907
5217
0.032130
GGAATACTCGCAGATCGCCA
59.968
55.000
4.37
0.00
37.30
5.69
3053
5450
4.025015
GCTGTAGCATGACAAATTCCTG
57.975
45.455
0.00
0.00
41.59
3.86
3078
5475
6.662865
TCCTTGAAAACTCATGGCAATTAA
57.337
33.333
0.00
0.00
35.59
1.40
3168
5565
4.900635
ACACGAACAATTTTCTTCTGCT
57.099
36.364
0.00
0.00
0.00
4.24
3200
5597
6.107901
AGCATGGCAATTTTTACCAGTTTA
57.892
33.333
0.00
0.00
36.78
2.01
3225
5622
5.048364
TCCGGGATGACAAATTGTGTTTTAG
60.048
40.000
2.20
0.00
41.96
1.85
3226
5623
4.827835
TCCGGGATGACAAATTGTGTTTTA
59.172
37.500
2.20
0.00
41.96
1.52
3269
5666
5.220381
CGCACTAAACAGTTCTCTCAAGTA
58.780
41.667
0.00
0.00
0.00
2.24
3270
5667
4.051922
CGCACTAAACAGTTCTCTCAAGT
58.948
43.478
0.00
0.00
0.00
3.16
3277
5674
2.870411
GTTGACCGCACTAAACAGTTCT
59.130
45.455
0.00
0.00
0.00
3.01
3292
5689
2.726832
AAGCTGACTACGAGTTGACC
57.273
50.000
0.00
0.00
0.00
4.02
3293
5690
4.681835
TCTAAGCTGACTACGAGTTGAC
57.318
45.455
0.00
0.00
0.00
3.18
3297
5694
4.011023
ACACATCTAAGCTGACTACGAGT
58.989
43.478
0.00
0.00
0.00
4.18
3321
5720
3.555795
GGCAATCACTGTTCTCTCTCACA
60.556
47.826
0.00
0.00
0.00
3.58
3325
5724
2.611473
CGTGGCAATCACTGTTCTCTCT
60.611
50.000
0.00
0.00
43.94
3.10
3340
5739
0.746204
TCAAAGCAAGACACGTGGCA
60.746
50.000
26.11
0.00
0.00
4.92
3346
5745
4.447724
TGTACGAATCTCAAAGCAAGACAC
59.552
41.667
0.00
0.00
0.00
3.67
3370
5769
5.170625
CACTTTGTGACACGTTTAATTTCCG
59.829
40.000
0.22
0.00
35.23
4.30
3391
5790
2.105993
AGGGGTTTCTTAAGCGAACACT
59.894
45.455
17.65
13.51
32.54
3.55
3401
5800
4.223032
GTGTCATCTCAGAGGGGTTTCTTA
59.777
45.833
0.00
0.00
0.00
2.10
3404
5803
2.569404
AGTGTCATCTCAGAGGGGTTTC
59.431
50.000
0.00
0.00
0.00
2.78
3408
5807
4.406972
TGATTTAGTGTCATCTCAGAGGGG
59.593
45.833
0.00
0.00
0.00
4.79
3483
5882
8.879227
TCTCAATGGGTATTTTGAAGGAATTTT
58.121
29.630
0.00
0.00
31.85
1.82
3522
5921
5.221621
CCCCAGAGATGGAGTAGAAAAGATC
60.222
48.000
0.00
0.00
0.00
2.75
3523
5922
4.657969
CCCCAGAGATGGAGTAGAAAAGAT
59.342
45.833
0.00
0.00
0.00
2.40
3525
5924
4.033709
TCCCCAGAGATGGAGTAGAAAAG
58.966
47.826
0.00
0.00
0.00
2.27
3526
5925
4.033709
CTCCCCAGAGATGGAGTAGAAAA
58.966
47.826
0.00
0.00
43.39
2.29
3534
5933
0.636647
TAGTGCTCCCCAGAGATGGA
59.363
55.000
0.00
0.00
43.39
3.41
3535
5934
1.727062
ATAGTGCTCCCCAGAGATGG
58.273
55.000
0.00
0.00
43.39
3.51
3537
5936
2.053244
CCAATAGTGCTCCCCAGAGAT
58.947
52.381
0.00
0.00
43.39
2.75
3540
5939
0.911769
CACCAATAGTGCTCCCCAGA
59.088
55.000
0.00
0.00
40.28
3.86
3541
5940
3.483954
CACCAATAGTGCTCCCCAG
57.516
57.895
0.00
0.00
40.28
4.45
3585
6070
4.452825
GGAGCCTTTCCTACTTATGAACC
58.547
47.826
0.00
0.00
43.16
3.62
3589
6074
2.224305
CGGGGAGCCTTTCCTACTTATG
60.224
54.545
0.00
0.00
45.98
1.90
3598
6083
2.045242
GAACCCGGGGAGCCTTTC
60.045
66.667
27.92
14.64
0.00
2.62
3602
6087
4.097361
GACTGAACCCGGGGAGCC
62.097
72.222
27.92
11.09
0.00
4.70
3610
6095
1.301479
GGTGGTGTCGACTGAACCC
60.301
63.158
17.92
9.70
32.70
4.11
3612
6097
0.319641
GGAGGTGGTGTCGACTGAAC
60.320
60.000
17.92
11.31
0.00
3.18
3618
6103
1.970114
GACGAGGAGGTGGTGTCGA
60.970
63.158
0.00
0.00
36.30
4.20
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.