Multiple sequence alignment - TraesCS3B01G460800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G460800 chr3B 100.000 3821 0 0 1 3821 704133850 704137670 0.000000e+00 7057.0
1 TraesCS3B01G460800 chr3B 98.421 1393 22 0 2158 3550 704042513 704043905 0.000000e+00 2451.0
2 TraesCS3B01G460800 chr3B 97.866 937 20 0 1066 2002 704040143 704041079 0.000000e+00 1620.0
3 TraesCS3B01G460800 chr3B 93.548 279 13 5 3544 3819 17228565 17228289 9.880000e-111 411.0
4 TraesCS3B01G460800 chr3B 98.235 170 1 1 2002 2171 704042309 704042476 2.890000e-76 296.0
5 TraesCS3B01G460800 chr3B 92.683 41 1 2 1 41 704040105 704040143 1.480000e-04 58.4
6 TraesCS3B01G460800 chr3A 93.950 2694 128 19 444 3126 667218485 667221154 0.000000e+00 4039.0
7 TraesCS3B01G460800 chr3A 93.608 2065 124 6 1492 3550 667278208 667280270 0.000000e+00 3075.0
8 TraesCS3B01G460800 chr3A 93.524 1050 60 4 444 1492 667261536 667262578 0.000000e+00 1555.0
9 TraesCS3B01G460800 chr3A 91.453 234 15 3 211 443 667218216 667218445 2.220000e-82 316.0
10 TraesCS3B01G460800 chr3A 91.453 234 15 3 211 443 667261268 667261497 2.220000e-82 316.0
11 TraesCS3B01G460800 chr3A 91.549 213 17 1 1 213 667259666 667259877 3.730000e-75 292.0
12 TraesCS3B01G460800 chr3A 90.610 213 19 1 1 213 667216609 667216820 8.080000e-72 281.0
13 TraesCS3B01G460800 chr3A 91.071 112 6 2 983 1090 667215728 667215839 8.550000e-32 148.0
14 TraesCS3B01G460800 chr3A 91.071 112 6 2 983 1090 667258788 667258899 8.550000e-32 148.0
15 TraesCS3B01G460800 chr7B 94.485 272 12 3 3551 3821 684718298 684718029 2.120000e-112 416.0
16 TraesCS3B01G460800 chr7B 91.379 58 5 0 217 274 395591789 395591846 3.160000e-11 80.5
17 TraesCS3B01G460800 chr5B 94.182 275 13 3 3549 3821 694529538 694529811 2.120000e-112 416.0
18 TraesCS3B01G460800 chr5B 94.182 275 11 4 3548 3821 593431870 593431600 7.640000e-112 414.0
19 TraesCS3B01G460800 chr5B 94.096 271 14 2 3551 3821 607183676 607183408 9.880000e-111 411.0
20 TraesCS3B01G460800 chr5B 74.599 685 148 14 1078 1746 677673247 677673921 1.050000e-70 278.0
21 TraesCS3B01G460800 chr5B 90.164 61 6 0 214 274 324770575 324770635 3.160000e-11 80.5
22 TraesCS3B01G460800 chr6B 93.750 272 13 4 3551 3821 66671916 66672184 4.600000e-109 405.0
23 TraesCS3B01G460800 chr6B 93.750 272 14 3 3551 3821 507642260 507642529 4.600000e-109 405.0
24 TraesCS3B01G460800 chr2B 93.773 273 12 4 3551 3821 59670936 59670667 4.600000e-109 405.0
25 TraesCS3B01G460800 chr4A 93.382 272 15 3 3551 3821 649068519 649068788 2.140000e-107 399.0
26 TraesCS3B01G460800 chr4A 79.949 389 70 5 1078 1462 634418229 634418613 2.910000e-71 279.0
27 TraesCS3B01G460800 chr4A 79.692 389 71 5 1078 1462 634450498 634450882 1.350000e-69 274.0
28 TraesCS3B01G460800 chr5D 81.127 355 67 0 1108 1462 536758331 536757977 6.250000e-73 285.0
29 TraesCS3B01G460800 chr1D 91.743 109 6 1 444 549 11804402 11804294 8.550000e-32 148.0
30 TraesCS3B01G460800 chr2D 90.826 109 7 1 444 549 5672164 5672272 3.980000e-30 143.0
31 TraesCS3B01G460800 chr2D 90.826 109 7 1 444 549 483172351 483172459 3.980000e-30 143.0
32 TraesCS3B01G460800 chr1A 89.655 116 7 3 444 556 355717936 355717823 3.980000e-30 143.0
33 TraesCS3B01G460800 chrUn 89.908 109 8 1 444 549 8098721 8098613 1.850000e-28 137.0
34 TraesCS3B01G460800 chrUn 89.908 109 8 1 444 549 62462262 62462370 1.850000e-28 137.0
35 TraesCS3B01G460800 chrUn 89.908 109 8 1 444 549 62534274 62534382 1.850000e-28 137.0
36 TraesCS3B01G460800 chr1B 76.190 189 33 9 219 403 101576625 101576445 5.260000e-14 89.8
37 TraesCS3B01G460800 chr7D 93.103 58 4 0 217 274 159061654 159061597 6.800000e-13 86.1
38 TraesCS3B01G460800 chr7D 94.231 52 3 0 216 267 276264648 276264597 3.160000e-11 80.5
39 TraesCS3B01G460800 chr4D 90.164 61 6 0 214 274 124052150 124052090 3.160000e-11 80.5
40 TraesCS3B01G460800 chr5A 89.831 59 5 1 216 274 1719689 1719746 1.470000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G460800 chr3B 704133850 704137670 3820 False 7057.00 7057 100.00000 1 3821 1 chr3B.!!$F1 3820
1 TraesCS3B01G460800 chr3B 704040105 704043905 3800 False 1106.35 2451 96.80125 1 3550 4 chr3B.!!$F2 3549
2 TraesCS3B01G460800 chr3A 667278208 667280270 2062 False 3075.00 3075 93.60800 1492 3550 1 chr3A.!!$F1 2058
3 TraesCS3B01G460800 chr3A 667215728 667221154 5426 False 1196.00 4039 91.77100 1 3126 4 chr3A.!!$F2 3125
4 TraesCS3B01G460800 chr3A 667258788 667262578 3790 False 577.75 1555 91.89925 1 1492 4 chr3A.!!$F3 1491
5 TraesCS3B01G460800 chr5B 677673247 677673921 674 False 278.00 278 74.59900 1078 1746 1 chr5B.!!$F2 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 993 0.032615 ACTGTTTTTGACCCTGGGCA 60.033 50.000 14.08 9.29 0.0 5.36 F
548 2868 0.597377 GAGCCGGGCAAAACTTGTTG 60.597 55.000 23.09 0.00 0.0 3.33 F
1863 4193 1.072965 CTTGCTTTCCCTCTGACACCT 59.927 52.381 0.00 0.00 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 4193 0.829990 TGATGGCGCCAATAGTCTCA 59.170 50.000 36.33 27.66 0.0 3.27 R
2430 6044 4.324099 CCCATGATTTCACAGTCCTCTCTT 60.324 45.833 0.00 0.00 0.0 2.85 R
3662 7283 0.036765 ACTTTAGCGCCGGTTCATGA 60.037 50.000 2.29 0.00 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 931 9.987272 AAGACATGATCAACGATAGATAATTGA 57.013 29.630 0.00 0.00 41.38 2.57
54 936 8.183104 TGATCAACGATAGATAATTGACCTCT 57.817 34.615 0.00 0.00 34.08 3.69
79 961 7.724305 TGTTCCGCCTTGTAGATAATATTTC 57.276 36.000 0.00 0.00 0.00 2.17
106 988 6.742559 TTAGTCTCTACTGTTTTTGACCCT 57.257 37.500 0.00 0.00 36.36 4.34
109 991 3.072476 TCTCTACTGTTTTTGACCCTGGG 59.928 47.826 12.28 12.28 0.00 4.45
110 992 1.886542 CTACTGTTTTTGACCCTGGGC 59.113 52.381 14.08 6.42 0.00 5.36
111 993 0.032615 ACTGTTTTTGACCCTGGGCA 60.033 50.000 14.08 9.29 0.00 5.36
112 994 1.118838 CTGTTTTTGACCCTGGGCAA 58.881 50.000 14.08 15.04 0.00 4.52
115 997 2.507471 TGTTTTTGACCCTGGGCAAATT 59.493 40.909 25.47 4.55 32.27 1.82
140 1022 5.468540 AGAAGTGTGTACAATGTAGCAGA 57.531 39.130 0.00 0.00 0.00 4.26
142 1024 3.589988 AGTGTGTACAATGTAGCAGAGC 58.410 45.455 0.00 0.00 0.00 4.09
152 1034 5.163683 ACAATGTAGCAGAGCAATGTCATTC 60.164 40.000 0.00 0.00 0.00 2.67
160 1042 4.025896 CAGAGCAATGTCATTCTCTTAGCG 60.026 45.833 17.72 8.78 33.99 4.26
178 1060 2.793232 AGCGAAGTTACGAGTTGTTCAC 59.207 45.455 0.00 0.00 35.09 3.18
283 2564 3.024547 TGATACTAGTGTCCACCTCTGC 58.975 50.000 16.09 0.00 0.00 4.26
405 2686 8.868522 ATGATACCAACATCTTCTTTTTCTCA 57.131 30.769 0.00 0.00 0.00 3.27
407 2688 9.130661 TGATACCAACATCTTCTTTTTCTCAAA 57.869 29.630 0.00 0.00 0.00 2.69
408 2689 9.965824 GATACCAACATCTTCTTTTTCTCAAAA 57.034 29.630 0.00 0.00 0.00 2.44
456 2776 9.650539 ATCTATTCATCTTTTACATCCAGATCG 57.349 33.333 0.00 0.00 0.00 3.69
460 2780 6.749139 TCATCTTTTACATCCAGATCGGTAG 58.251 40.000 3.97 1.67 35.57 3.18
545 2865 2.650778 GGAGCCGGGCAAAACTTG 59.349 61.111 23.09 0.00 0.00 3.16
548 2868 0.597377 GAGCCGGGCAAAACTTGTTG 60.597 55.000 23.09 0.00 0.00 3.33
573 2893 7.719193 TGGCATGTAAGCAATATGTACATACTT 59.281 33.333 17.69 17.18 36.54 2.24
576 2896 7.490962 TGTAAGCAATATGTACATACTTGGC 57.509 36.000 17.69 16.78 0.00 4.52
603 2923 6.298361 TGCATTAGGCTTCATAATTGAGCTA 58.702 36.000 0.00 0.00 45.15 3.32
607 2927 9.494271 CATTAGGCTTCATAATTGAGCTACTTA 57.506 33.333 0.00 0.00 32.27 2.24
699 3019 5.532557 CAAGCTATTCATCCATAGTCGACA 58.467 41.667 19.50 4.13 0.00 4.35
710 3030 5.176592 TCCATAGTCGACATATAGAGTCCG 58.823 45.833 19.50 0.12 32.41 4.79
718 3039 7.228108 AGTCGACATATAGAGTCCGAATTACAA 59.772 37.037 19.50 0.00 32.41 2.41
757 3078 5.163416 CCTTCCTCAATTTGGAGTGTGTTTT 60.163 40.000 0.00 0.00 34.76 2.43
764 3085 4.464069 TTTGGAGTGTGTTTTGGGAAAG 57.536 40.909 0.00 0.00 0.00 2.62
860 3181 5.048504 CACCGCATGGAGCAATAAGATTAAT 60.049 40.000 0.00 0.00 46.13 1.40
863 3184 7.230510 ACCGCATGGAGCAATAAGATTAATTAA 59.769 33.333 0.00 0.00 46.13 1.40
864 3185 7.752239 CCGCATGGAGCAATAAGATTAATTAAG 59.248 37.037 3.94 0.00 46.13 1.85
865 3186 8.292448 CGCATGGAGCAATAAGATTAATTAAGT 58.708 33.333 3.94 0.00 46.13 2.24
908 3229 2.280628 CGCTCCAGGGTTAACTTCATC 58.719 52.381 5.42 0.00 0.00 2.92
918 3239 4.933400 GGGTTAACTTCATCGTTCTTGCTA 59.067 41.667 5.42 0.00 0.00 3.49
919 3240 5.163884 GGGTTAACTTCATCGTTCTTGCTAC 60.164 44.000 5.42 0.00 0.00 3.58
967 3288 1.959282 AGCTCAAAGCCCAGAAACAAG 59.041 47.619 0.00 0.00 43.77 3.16
980 3301 4.080638 CCAGAAACAAGGCTAATCTCCTCT 60.081 45.833 0.00 0.00 32.45 3.69
984 3305 6.442244 AGAAACAAGGCTAATCTCCTCTAGTT 59.558 38.462 0.00 0.00 32.45 2.24
989 3310 3.134804 GGCTAATCTCCTCTAGTTGCCAA 59.865 47.826 0.00 0.00 37.91 4.52
997 3318 5.248477 TCTCCTCTAGTTGCCAATTAACTGT 59.752 40.000 2.90 0.00 38.70 3.55
1047 3368 2.472695 TTGCTCAAGCCACGATACTT 57.527 45.000 0.00 0.00 41.18 2.24
1333 3654 2.125952 CGAGCAGCGTGACCATCA 60.126 61.111 0.00 0.00 34.64 3.07
1467 3788 1.335132 TGGAGTCCATAAGGGCCGAC 61.335 60.000 8.12 0.00 41.85 4.79
1629 3959 1.471684 CTCGCCTACGACCAAGTAAGT 59.528 52.381 0.00 0.00 45.12 2.24
1857 4187 2.751806 GGATTCACTTGCTTTCCCTCTG 59.248 50.000 0.00 0.00 0.00 3.35
1860 4190 1.768275 TCACTTGCTTTCCCTCTGACA 59.232 47.619 0.00 0.00 0.00 3.58
1863 4193 1.072965 CTTGCTTTCCCTCTGACACCT 59.927 52.381 0.00 0.00 0.00 4.00
1890 4220 1.539157 TTGGCGCCATCATGTTTGTA 58.461 45.000 33.25 8.24 0.00 2.41
2081 5642 8.643324 AGACTAGTTTGATAGGTTATGTCATCC 58.357 37.037 0.00 0.00 0.00 3.51
2122 5686 4.704965 ACAGTTTGTGTCTTAACCTCCTC 58.295 43.478 0.00 0.00 31.90 3.71
2221 5835 1.143401 GGAGGCGCTACTACAACCC 59.857 63.158 7.64 0.00 0.00 4.11
2370 5984 3.307242 GTGGACTCAACTACATGCGAATC 59.693 47.826 0.00 0.00 0.00 2.52
2371 5985 3.056179 TGGACTCAACTACATGCGAATCA 60.056 43.478 0.00 0.00 0.00 2.57
2430 6044 2.879233 GCTTGTCCCCCGTGAGTCA 61.879 63.158 0.00 0.00 0.00 3.41
2726 6340 3.497640 CCTGATGGAGAGAATTCGCATTC 59.502 47.826 11.94 0.00 36.17 2.67
2805 6419 4.520179 TGAGAGCTACTCCGTATGTACAA 58.480 43.478 0.00 0.00 44.34 2.41
3183 6803 6.717540 AGAGGACATGCTCGAGTAACTTATAT 59.282 38.462 15.13 0.00 0.00 0.86
3242 6862 6.049149 ACATCAAATCCCTCGTATGTGTAAG 58.951 40.000 0.00 0.00 0.00 2.34
3352 6973 6.192773 TCCCTCGAGATCCTAGTTTTTCTAA 58.807 40.000 15.71 0.00 0.00 2.10
3550 7171 0.171007 CCACGTGGATGCCAATTCAC 59.829 55.000 31.31 0.00 38.74 3.18
3551 7172 0.880441 CACGTGGATGCCAATTCACA 59.120 50.000 7.95 0.00 41.81 3.58
3552 7173 0.881118 ACGTGGATGCCAATTCACAC 59.119 50.000 0.00 0.00 41.81 3.82
3553 7174 1.167851 CGTGGATGCCAATTCACACT 58.832 50.000 0.00 0.00 41.81 3.55
3554 7175 2.290008 ACGTGGATGCCAATTCACACTA 60.290 45.455 0.00 0.00 41.81 2.74
3555 7176 2.352651 CGTGGATGCCAATTCACACTAG 59.647 50.000 0.00 0.00 41.81 2.57
3556 7177 3.347216 GTGGATGCCAATTCACACTAGT 58.653 45.455 0.00 0.00 41.41 2.57
3557 7178 3.127548 GTGGATGCCAATTCACACTAGTG 59.872 47.826 21.44 21.44 41.41 2.74
3558 7179 2.098117 GGATGCCAATTCACACTAGTGC 59.902 50.000 22.90 6.70 45.49 4.40
3559 7180 2.268762 TGCCAATTCACACTAGTGCA 57.731 45.000 22.90 9.40 45.49 4.57
3560 7181 2.153645 TGCCAATTCACACTAGTGCAG 58.846 47.619 22.90 15.37 45.49 4.41
3561 7182 2.224499 TGCCAATTCACACTAGTGCAGA 60.224 45.455 22.90 17.42 45.49 4.26
3562 7183 2.813754 GCCAATTCACACTAGTGCAGAA 59.186 45.455 24.83 24.83 45.49 3.02
3563 7184 3.365364 GCCAATTCACACTAGTGCAGAAC 60.365 47.826 25.02 13.83 45.49 3.01
3564 7185 3.189287 CCAATTCACACTAGTGCAGAACC 59.811 47.826 25.02 0.00 45.49 3.62
3565 7186 2.148916 TTCACACTAGTGCAGAACCG 57.851 50.000 22.90 3.21 45.49 4.44
3566 7187 0.317160 TCACACTAGTGCAGAACCGG 59.683 55.000 22.90 0.00 45.49 5.28
3567 7188 1.004918 ACACTAGTGCAGAACCGGC 60.005 57.895 22.90 0.00 0.00 6.13
3568 7189 1.741770 CACTAGTGCAGAACCGGCC 60.742 63.158 10.54 0.00 0.00 6.13
3569 7190 1.913762 ACTAGTGCAGAACCGGCCT 60.914 57.895 0.00 0.00 0.00 5.19
3570 7191 1.296715 CTAGTGCAGAACCGGCCTT 59.703 57.895 0.00 0.00 0.00 4.35
3571 7192 0.321653 CTAGTGCAGAACCGGCCTTT 60.322 55.000 0.00 0.00 0.00 3.11
3572 7193 0.978151 TAGTGCAGAACCGGCCTTTA 59.022 50.000 0.00 0.00 0.00 1.85
3573 7194 0.321653 AGTGCAGAACCGGCCTTTAG 60.322 55.000 0.00 0.00 0.00 1.85
3574 7195 0.605589 GTGCAGAACCGGCCTTTAGT 60.606 55.000 0.00 0.00 0.00 2.24
3575 7196 0.605319 TGCAGAACCGGCCTTTAGTG 60.605 55.000 0.00 0.00 0.00 2.74
3576 7197 1.923227 GCAGAACCGGCCTTTAGTGC 61.923 60.000 0.00 0.20 0.00 4.40
3577 7198 1.002502 AGAACCGGCCTTTAGTGCC 60.003 57.895 0.00 0.00 45.70 5.01
3582 7203 3.587095 GGCCTTTAGTGCCGGTTC 58.413 61.111 1.90 0.00 39.48 3.62
3583 7204 2.396157 GGCCTTTAGTGCCGGTTCG 61.396 63.158 1.90 0.00 39.48 3.95
3584 7205 1.670083 GCCTTTAGTGCCGGTTCGT 60.670 57.895 1.90 0.00 0.00 3.85
3585 7206 0.390209 GCCTTTAGTGCCGGTTCGTA 60.390 55.000 1.90 0.00 0.00 3.43
3586 7207 1.940752 GCCTTTAGTGCCGGTTCGTAA 60.941 52.381 1.90 0.00 0.00 3.18
3587 7208 1.728425 CCTTTAGTGCCGGTTCGTAAC 59.272 52.381 1.90 0.00 0.00 2.50
3588 7209 1.387756 CTTTAGTGCCGGTTCGTAACG 59.612 52.381 1.90 0.00 0.00 3.18
3593 7214 2.047939 CCGGTTCGTAACGGCCTT 60.048 61.111 5.32 0.00 43.96 4.35
3594 7215 1.668793 CCGGTTCGTAACGGCCTTT 60.669 57.895 5.32 0.00 43.96 3.11
3595 7216 0.389687 CCGGTTCGTAACGGCCTTTA 60.390 55.000 5.32 0.00 43.96 1.85
3596 7217 0.994263 CGGTTCGTAACGGCCTTTAG 59.006 55.000 1.13 0.00 0.00 1.85
3597 7218 1.669795 CGGTTCGTAACGGCCTTTAGT 60.670 52.381 1.13 0.00 0.00 2.24
3598 7219 1.728425 GGTTCGTAACGGCCTTTAGTG 59.272 52.381 1.13 0.00 0.00 2.74
3599 7220 2.407090 GTTCGTAACGGCCTTTAGTGT 58.593 47.619 1.13 0.00 0.00 3.55
3600 7221 2.352503 TCGTAACGGCCTTTAGTGTC 57.647 50.000 1.13 0.00 0.00 3.67
3601 7222 0.986992 CGTAACGGCCTTTAGTGTCG 59.013 55.000 1.13 0.00 0.00 4.35
3602 7223 1.353076 GTAACGGCCTTTAGTGTCGG 58.647 55.000 1.13 0.00 0.00 4.79
3603 7224 0.968405 TAACGGCCTTTAGTGTCGGT 59.032 50.000 0.00 0.00 0.00 4.69
3604 7225 0.107268 AACGGCCTTTAGTGTCGGTT 59.893 50.000 0.00 0.00 0.00 4.44
3605 7226 0.320160 ACGGCCTTTAGTGTCGGTTC 60.320 55.000 0.00 0.00 0.00 3.62
3606 7227 1.349259 CGGCCTTTAGTGTCGGTTCG 61.349 60.000 0.00 0.00 0.00 3.95
3607 7228 1.017701 GGCCTTTAGTGTCGGTTCGG 61.018 60.000 0.00 0.00 0.00 4.30
3608 7229 1.632948 GCCTTTAGTGTCGGTTCGGC 61.633 60.000 0.00 0.00 0.00 5.54
3609 7230 0.320073 CCTTTAGTGTCGGTTCGGCA 60.320 55.000 0.00 0.00 39.83 5.69
3610 7231 1.504359 CTTTAGTGTCGGTTCGGCAA 58.496 50.000 0.00 0.00 44.86 4.52
3611 7232 1.193874 CTTTAGTGTCGGTTCGGCAAC 59.806 52.381 0.00 0.00 44.86 4.17
3612 7233 0.600782 TTAGTGTCGGTTCGGCAACC 60.601 55.000 0.00 8.30 44.86 3.77
3625 7246 2.928416 GCAACCGGCACTAAAGAGT 58.072 52.632 0.00 0.00 43.97 3.24
3637 7258 4.554960 ACTAAAGAGTGGGGACTAAAGC 57.445 45.455 0.00 0.00 33.41 3.51
3638 7259 2.881111 AAAGAGTGGGGACTAAAGCC 57.119 50.000 0.00 0.00 0.00 4.35
3639 7260 2.046280 AAGAGTGGGGACTAAAGCCT 57.954 50.000 0.00 0.00 0.00 4.58
3640 7261 1.574263 AGAGTGGGGACTAAAGCCTC 58.426 55.000 0.00 0.00 0.00 4.70
3641 7262 0.542333 GAGTGGGGACTAAAGCCTCC 59.458 60.000 0.00 0.00 0.00 4.30
3642 7263 0.914902 AGTGGGGACTAAAGCCTCCC 60.915 60.000 0.00 0.00 45.17 4.30
3644 7265 3.332395 GGGACTAAAGCCTCCCCC 58.668 66.667 0.00 0.00 40.53 5.40
3661 7282 2.885135 CCCCCTTTAGTACCGGTTTT 57.115 50.000 15.04 3.67 0.00 2.43
3662 7283 3.159213 CCCCCTTTAGTACCGGTTTTT 57.841 47.619 15.04 0.62 0.00 1.94
3663 7284 3.084039 CCCCCTTTAGTACCGGTTTTTC 58.916 50.000 15.04 1.07 0.00 2.29
3664 7285 3.498301 CCCCCTTTAGTACCGGTTTTTCA 60.498 47.826 15.04 0.00 0.00 2.69
3665 7286 4.338012 CCCCTTTAGTACCGGTTTTTCAT 58.662 43.478 15.04 0.00 0.00 2.57
3666 7287 4.157105 CCCCTTTAGTACCGGTTTTTCATG 59.843 45.833 15.04 0.00 0.00 3.07
3667 7288 5.005094 CCCTTTAGTACCGGTTTTTCATGA 58.995 41.667 15.04 0.00 0.00 3.07
3668 7289 5.474189 CCCTTTAGTACCGGTTTTTCATGAA 59.526 40.000 15.04 3.38 0.00 2.57
3669 7290 6.376177 CCTTTAGTACCGGTTTTTCATGAAC 58.624 40.000 15.04 0.15 0.00 3.18
3670 7291 5.945466 TTAGTACCGGTTTTTCATGAACC 57.055 39.130 15.04 6.30 42.47 3.62
3674 7295 3.101019 GGTTTTTCATGAACCGGCG 57.899 52.632 7.89 0.00 37.41 6.46
3675 7296 1.006825 GGTTTTTCATGAACCGGCGC 61.007 55.000 7.89 0.00 37.41 6.53
3676 7297 0.039527 GTTTTTCATGAACCGGCGCT 60.040 50.000 7.89 0.00 0.00 5.92
3677 7298 1.198178 GTTTTTCATGAACCGGCGCTA 59.802 47.619 7.89 0.00 0.00 4.26
3678 7299 1.524848 TTTTCATGAACCGGCGCTAA 58.475 45.000 7.89 0.00 0.00 3.09
3679 7300 1.524848 TTTCATGAACCGGCGCTAAA 58.475 45.000 7.89 0.00 0.00 1.85
3680 7301 1.083489 TTCATGAACCGGCGCTAAAG 58.917 50.000 7.64 0.00 0.00 1.85
3681 7302 0.036765 TCATGAACCGGCGCTAAAGT 60.037 50.000 7.64 0.00 0.00 2.66
3682 7303 0.096976 CATGAACCGGCGCTAAAGTG 59.903 55.000 7.64 0.00 0.00 3.16
3683 7304 0.321298 ATGAACCGGCGCTAAAGTGT 60.321 50.000 7.64 0.00 0.00 3.55
3684 7305 0.947180 TGAACCGGCGCTAAAGTGTC 60.947 55.000 7.64 0.00 0.00 3.67
3685 7306 0.947180 GAACCGGCGCTAAAGTGTCA 60.947 55.000 7.64 0.00 0.00 3.58
3686 7307 1.226030 AACCGGCGCTAAAGTGTCAC 61.226 55.000 7.64 0.00 0.00 3.67
3687 7308 2.388232 CCGGCGCTAAAGTGTCACC 61.388 63.158 7.64 0.00 0.00 4.02
3688 7309 1.666553 CGGCGCTAAAGTGTCACCA 60.667 57.895 7.64 0.00 0.00 4.17
3689 7310 1.866925 GGCGCTAAAGTGTCACCAC 59.133 57.895 7.64 0.00 42.17 4.16
3690 7311 1.491563 GCGCTAAAGTGTCACCACG 59.508 57.895 0.00 0.00 46.56 4.94
3691 7312 1.219522 GCGCTAAAGTGTCACCACGT 61.220 55.000 0.00 0.00 46.56 4.49
3692 7313 0.506932 CGCTAAAGTGTCACCACGTG 59.493 55.000 9.08 9.08 46.56 4.49
3693 7314 0.865769 GCTAAAGTGTCACCACGTGG 59.134 55.000 32.83 32.83 46.56 4.94
3694 7315 0.865769 CTAAAGTGTCACCACGTGGC 59.134 55.000 34.26 18.65 46.56 5.01
3695 7316 0.178301 TAAAGTGTCACCACGTGGCA 59.822 50.000 34.26 21.15 46.26 4.92
3698 7319 3.839432 TGTCACCACGTGGCACGA 61.839 61.111 42.65 24.10 43.49 4.35
3699 7320 3.036084 GTCACCACGTGGCACGAG 61.036 66.667 42.65 34.61 46.05 4.18
3700 7321 4.961511 TCACCACGTGGCACGAGC 62.962 66.667 42.65 4.67 46.05 5.03
3724 7345 4.508128 CGGGTGCGCGTAGGACAT 62.508 66.667 8.43 0.00 43.57 3.06
3725 7346 2.125269 GGGTGCGCGTAGGACATT 60.125 61.111 8.43 0.00 43.57 2.71
3726 7347 1.142314 GGGTGCGCGTAGGACATTA 59.858 57.895 8.43 0.00 43.57 1.90
3727 7348 0.874607 GGGTGCGCGTAGGACATTAG 60.875 60.000 8.43 0.00 43.57 1.73
3728 7349 0.179119 GGTGCGCGTAGGACATTAGT 60.179 55.000 8.43 0.00 43.57 2.24
3729 7350 1.066002 GGTGCGCGTAGGACATTAGTA 59.934 52.381 8.43 0.00 43.57 1.82
3730 7351 2.114825 GTGCGCGTAGGACATTAGTAC 58.885 52.381 8.43 0.00 41.21 2.73
3731 7352 1.066002 TGCGCGTAGGACATTAGTACC 59.934 52.381 8.43 0.00 0.00 3.34
3732 7353 1.923316 GCGCGTAGGACATTAGTACCG 60.923 57.143 8.43 0.00 0.00 4.02
3733 7354 1.334419 CGCGTAGGACATTAGTACCGG 60.334 57.143 0.00 0.00 0.00 5.28
3734 7355 1.678101 GCGTAGGACATTAGTACCGGT 59.322 52.381 13.98 13.98 0.00 5.28
3735 7356 2.099756 GCGTAGGACATTAGTACCGGTT 59.900 50.000 15.04 0.00 0.00 4.44
3736 7357 3.699067 CGTAGGACATTAGTACCGGTTG 58.301 50.000 15.04 7.13 0.00 3.77
3737 7358 3.378112 CGTAGGACATTAGTACCGGTTGA 59.622 47.826 15.04 0.00 0.00 3.18
3738 7359 4.037208 CGTAGGACATTAGTACCGGTTGAT 59.963 45.833 15.04 0.95 0.00 2.57
3739 7360 5.239306 CGTAGGACATTAGTACCGGTTGATA 59.761 44.000 15.04 0.00 0.00 2.15
3740 7361 6.238731 CGTAGGACATTAGTACCGGTTGATAA 60.239 42.308 15.04 10.38 0.00 1.75
3741 7362 5.910614 AGGACATTAGTACCGGTTGATAAC 58.089 41.667 15.04 3.84 0.00 1.89
3742 7363 5.422970 AGGACATTAGTACCGGTTGATAACA 59.577 40.000 15.04 0.00 0.00 2.41
3743 7364 5.521372 GGACATTAGTACCGGTTGATAACAC 59.479 44.000 15.04 1.99 0.00 3.32
3744 7365 5.422145 ACATTAGTACCGGTTGATAACACC 58.578 41.667 15.04 0.00 0.00 4.16
3745 7366 5.046448 ACATTAGTACCGGTTGATAACACCA 60.046 40.000 15.04 0.00 0.00 4.17
3746 7367 5.480642 TTAGTACCGGTTGATAACACCAA 57.519 39.130 15.04 0.00 0.00 3.67
3747 7368 4.563140 AGTACCGGTTGATAACACCAAT 57.437 40.909 15.04 0.00 0.00 3.16
3748 7369 4.510571 AGTACCGGTTGATAACACCAATC 58.489 43.478 15.04 0.00 0.00 2.67
3749 7370 2.352388 ACCGGTTGATAACACCAATCG 58.648 47.619 0.00 0.00 44.89 3.34
3752 7373 3.523547 CGGTTGATAACACCAATCGGTA 58.476 45.455 0.00 0.00 46.94 4.02
3753 7374 3.307782 CGGTTGATAACACCAATCGGTAC 59.692 47.826 0.00 0.00 46.94 3.34
3754 7375 4.510571 GGTTGATAACACCAATCGGTACT 58.489 43.478 0.00 0.00 46.94 2.73
3755 7376 5.663456 GGTTGATAACACCAATCGGTACTA 58.337 41.667 0.00 0.00 46.94 1.82
3756 7377 6.108015 GGTTGATAACACCAATCGGTACTAA 58.892 40.000 0.00 0.00 46.94 2.24
3757 7378 6.594937 GGTTGATAACACCAATCGGTACTAAA 59.405 38.462 0.00 0.00 46.94 1.85
3758 7379 7.281549 GGTTGATAACACCAATCGGTACTAAAT 59.718 37.037 0.00 0.00 46.94 1.40
3759 7380 7.780008 TGATAACACCAATCGGTACTAAATG 57.220 36.000 0.00 0.00 46.94 2.32
3760 7381 7.332557 TGATAACACCAATCGGTACTAAATGT 58.667 34.615 0.00 0.00 46.94 2.71
3761 7382 7.825270 TGATAACACCAATCGGTACTAAATGTT 59.175 33.333 0.00 0.00 46.94 2.71
3762 7383 6.887626 AACACCAATCGGTACTAAATGTTT 57.112 33.333 0.00 0.00 46.94 2.83
3763 7384 7.982761 AACACCAATCGGTACTAAATGTTTA 57.017 32.000 0.00 0.00 46.94 2.01
3764 7385 7.605410 ACACCAATCGGTACTAAATGTTTAG 57.395 36.000 10.21 10.21 46.94 1.85
3765 7386 6.596497 ACACCAATCGGTACTAAATGTTTAGG 59.404 38.462 14.92 0.52 46.94 2.69
3766 7387 6.037830 CACCAATCGGTACTAAATGTTTAGGG 59.962 42.308 14.92 7.64 46.94 3.53
3767 7388 5.529800 CCAATCGGTACTAAATGTTTAGGGG 59.470 44.000 14.92 3.84 43.38 4.79
3768 7389 4.758773 TCGGTACTAAATGTTTAGGGGG 57.241 45.455 14.92 4.11 43.38 5.40
3791 7412 2.261729 GGGGGTTGGCTTTATTTTCCA 58.738 47.619 0.00 0.00 0.00 3.53
3792 7413 2.843730 GGGGGTTGGCTTTATTTTCCAT 59.156 45.455 0.00 0.00 0.00 3.41
3793 7414 3.265737 GGGGGTTGGCTTTATTTTCCATT 59.734 43.478 0.00 0.00 0.00 3.16
3794 7415 4.513442 GGGGTTGGCTTTATTTTCCATTC 58.487 43.478 0.00 0.00 0.00 2.67
3795 7416 4.019771 GGGGTTGGCTTTATTTTCCATTCA 60.020 41.667 0.00 0.00 0.00 2.57
3796 7417 5.513962 GGGGTTGGCTTTATTTTCCATTCAA 60.514 40.000 0.00 0.00 0.00 2.69
3797 7418 6.179756 GGGTTGGCTTTATTTTCCATTCAAT 58.820 36.000 0.00 0.00 0.00 2.57
3798 7419 6.658816 GGGTTGGCTTTATTTTCCATTCAATT 59.341 34.615 0.00 0.00 0.00 2.32
3799 7420 7.176515 GGGTTGGCTTTATTTTCCATTCAATTT 59.823 33.333 0.00 0.00 0.00 1.82
3800 7421 8.575589 GGTTGGCTTTATTTTCCATTCAATTTT 58.424 29.630 0.00 0.00 0.00 1.82
3801 7422 9.964303 GTTGGCTTTATTTTCCATTCAATTTTT 57.036 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 921 5.357257 GCGGAACAAGAGGTCAATTATCTA 58.643 41.667 0.00 0.00 0.00 1.98
49 931 1.002087 CTACAAGGCGGAACAAGAGGT 59.998 52.381 0.00 0.00 0.00 3.85
54 936 7.771361 TGAAATATTATCTACAAGGCGGAACAA 59.229 33.333 0.00 0.00 0.00 2.83
79 961 8.290325 GGGTCAAAAACAGTAGAGACTAATTTG 58.710 37.037 0.00 0.00 35.29 2.32
95 977 2.928801 ATTTGCCCAGGGTCAAAAAC 57.071 45.000 23.80 1.78 34.44 2.43
106 988 4.098914 ACACACTTCTAGAATTTGCCCA 57.901 40.909 5.44 0.00 0.00 5.36
109 991 7.584987 ACATTGTACACACTTCTAGAATTTGC 58.415 34.615 5.44 0.00 0.00 3.68
111 993 8.936864 GCTACATTGTACACACTTCTAGAATTT 58.063 33.333 5.44 0.00 0.00 1.82
112 994 8.094548 TGCTACATTGTACACACTTCTAGAATT 58.905 33.333 5.44 0.00 0.00 2.17
115 997 6.433093 TCTGCTACATTGTACACACTTCTAGA 59.567 38.462 0.00 0.00 0.00 2.43
140 1022 4.128925 TCGCTAAGAGAATGACATTGCT 57.871 40.909 5.14 2.80 0.00 3.91
142 1024 6.414408 AACTTCGCTAAGAGAATGACATTG 57.586 37.500 5.14 0.00 36.50 2.82
152 1034 4.474113 ACAACTCGTAACTTCGCTAAGAG 58.526 43.478 4.78 0.00 36.50 2.85
233 2514 7.841222 TGCATGATACTGGTATATGATACTCCT 59.159 37.037 0.00 0.00 0.00 3.69
283 2564 6.643388 TGCCTACCTATGATATTATGCACTG 58.357 40.000 0.00 0.00 0.00 3.66
320 2601 9.545105 AATATGTGCCATACAAAACAATAATGG 57.455 29.630 0.00 0.00 43.77 3.16
407 2688 4.518249 TGAAGGTTTTCCCGCAAATTTTT 58.482 34.783 0.00 0.00 41.86 1.94
408 2689 4.143986 TGAAGGTTTTCCCGCAAATTTT 57.856 36.364 0.00 0.00 41.86 1.82
409 2690 3.828875 TGAAGGTTTTCCCGCAAATTT 57.171 38.095 0.00 0.00 41.86 1.82
410 2691 3.828875 TTGAAGGTTTTCCCGCAAATT 57.171 38.095 0.00 0.00 41.86 1.82
411 2692 3.578282 AGATTGAAGGTTTTCCCGCAAAT 59.422 39.130 0.00 0.00 41.86 2.32
460 2780 2.821969 TGGTAGTCTTCGTTAGGTGGTC 59.178 50.000 0.00 0.00 0.00 4.02
473 2793 0.244994 CGCTTCAGTGCTGGTAGTCT 59.755 55.000 0.00 0.00 0.00 3.24
545 2865 6.130298 TGTACATATTGCTTACATGCCAAC 57.870 37.500 0.00 0.00 0.00 3.77
548 2868 7.672983 AGTATGTACATATTGCTTACATGCC 57.327 36.000 18.27 1.59 38.74 4.40
555 2875 7.428020 CAATGCCAAGTATGTACATATTGCTT 58.572 34.615 18.27 13.62 0.00 3.91
573 2893 1.849977 TGAAGCCTAATGCAATGCCA 58.150 45.000 1.53 0.00 44.83 4.92
576 2896 6.365247 GCTCAATTATGAAGCCTAATGCAATG 59.635 38.462 0.00 0.00 44.83 2.82
603 2923 6.807230 GTGATCGAGTACACATGAAAGTAAGT 59.193 38.462 0.00 0.00 37.05 2.24
607 2927 5.134202 TGTGATCGAGTACACATGAAAGT 57.866 39.130 15.41 0.00 41.19 2.66
661 2981 0.025513 GCTTGCGCTTGTCGATACAG 59.974 55.000 9.73 0.00 41.67 2.74
692 3012 6.709397 TGTAATTCGGACTCTATATGTCGACT 59.291 38.462 17.92 4.95 35.45 4.18
757 3078 5.052693 ACTATGCATGATTAGCTTTCCCA 57.947 39.130 10.16 0.00 0.00 4.37
764 3085 3.653344 TGGACGACTATGCATGATTAGC 58.347 45.455 10.16 0.00 0.00 3.09
860 3181 9.387257 GCATGATATGATGGATGTCATACTTAA 57.613 33.333 4.25 0.00 40.06 1.85
863 3184 6.822170 GTGCATGATATGATGGATGTCATACT 59.178 38.462 4.25 0.00 40.06 2.12
864 3185 6.238022 CGTGCATGATATGATGGATGTCATAC 60.238 42.308 7.56 0.00 40.06 2.39
865 3186 5.813672 CGTGCATGATATGATGGATGTCATA 59.186 40.000 7.56 0.00 40.06 2.15
866 3187 4.634443 CGTGCATGATATGATGGATGTCAT 59.366 41.667 7.56 0.00 42.11 3.06
867 3188 3.998341 CGTGCATGATATGATGGATGTCA 59.002 43.478 7.56 0.00 36.69 3.58
874 3195 2.415512 CTGGAGCGTGCATGATATGATG 59.584 50.000 10.93 0.00 0.00 3.07
908 3229 7.062371 GCATACTTATAGGATGTAGCAAGAACG 59.938 40.741 1.19 0.00 0.00 3.95
967 3288 2.700897 TGGCAACTAGAGGAGATTAGCC 59.299 50.000 0.00 0.00 39.95 3.93
980 3301 4.704540 CCATGGACAGTTAATTGGCAACTA 59.295 41.667 5.56 0.00 34.50 2.24
984 3305 3.355378 CTCCATGGACAGTTAATTGGCA 58.645 45.455 11.44 0.00 0.00 4.92
989 3310 4.657814 AACACCTCCATGGACAGTTAAT 57.342 40.909 11.44 0.00 39.71 1.40
997 3318 2.308570 ACATGCTTAACACCTCCATGGA 59.691 45.455 15.27 15.27 38.02 3.41
1047 3368 7.544217 GCTGTGAGTTTAAGAAACAAAAGGAAA 59.456 33.333 4.99 0.00 43.79 3.13
1333 3654 3.121030 GCAGCAGCCGACGATGTT 61.121 61.111 0.00 0.00 33.58 2.71
1445 3766 1.623542 GGCCCTTATGGACTCCACGT 61.624 60.000 0.00 0.00 40.11 4.49
1857 4187 1.927895 CGCCAATAGTCTCAGGTGTC 58.072 55.000 0.00 0.00 0.00 3.67
1860 4190 1.264749 TGGCGCCAATAGTCTCAGGT 61.265 55.000 30.74 0.00 0.00 4.00
1863 4193 0.829990 TGATGGCGCCAATAGTCTCA 59.170 50.000 36.33 27.66 0.00 3.27
1890 4220 9.668497 GTACTATTCAAAATGGAAGGAGTACTT 57.332 33.333 16.09 0.00 41.38 2.24
2081 5642 6.551385 ACTGTTGAAGCAAATAAGAGTGAG 57.449 37.500 0.00 0.00 0.00 3.51
2370 5984 6.038714 GCAACCTAAGAACCTCCTTGATAATG 59.961 42.308 0.00 0.00 0.00 1.90
2371 5985 6.122964 GCAACCTAAGAACCTCCTTGATAAT 58.877 40.000 0.00 0.00 0.00 1.28
2430 6044 4.324099 CCCATGATTTCACAGTCCTCTCTT 60.324 45.833 0.00 0.00 0.00 2.85
2726 6340 2.732412 AGTCTCAGACATGTCCAACG 57.268 50.000 22.21 8.82 34.60 4.10
3045 6665 7.591421 TCCGTGTCCATATCTTTACTTGATA 57.409 36.000 0.00 0.00 0.00 2.15
3130 6750 8.514594 CAATGACACACAATGTTTAGACCTAAT 58.485 33.333 0.00 0.00 43.56 1.73
3183 6803 2.635915 CCATCCCGCTTAATAGGTGGTA 59.364 50.000 1.33 0.00 32.93 3.25
3242 6862 2.039879 CCCTATACCCCCACATAAGTGC 59.960 54.545 0.00 0.00 44.53 4.40
3550 7171 1.741770 GGCCGGTTCTGCACTAGTG 60.742 63.158 18.93 18.93 0.00 2.74
3551 7172 1.481056 AAGGCCGGTTCTGCACTAGT 61.481 55.000 1.90 0.00 0.00 2.57
3552 7173 0.321653 AAAGGCCGGTTCTGCACTAG 60.322 55.000 1.90 0.00 0.00 2.57
3553 7174 0.978151 TAAAGGCCGGTTCTGCACTA 59.022 50.000 1.90 0.00 0.00 2.74
3554 7175 0.321653 CTAAAGGCCGGTTCTGCACT 60.322 55.000 1.90 0.00 0.00 4.40
3555 7176 0.605589 ACTAAAGGCCGGTTCTGCAC 60.606 55.000 1.90 0.00 0.00 4.57
3556 7177 0.605319 CACTAAAGGCCGGTTCTGCA 60.605 55.000 1.90 0.00 0.00 4.41
3557 7178 1.923227 GCACTAAAGGCCGGTTCTGC 61.923 60.000 1.90 0.00 0.00 4.26
3558 7179 1.305930 GGCACTAAAGGCCGGTTCTG 61.306 60.000 1.90 0.00 42.39 3.02
3559 7180 1.002502 GGCACTAAAGGCCGGTTCT 60.003 57.895 1.90 0.00 42.39 3.01
3560 7181 3.587095 GGCACTAAAGGCCGGTTC 58.413 61.111 1.90 0.00 42.39 3.62
3566 7187 0.390209 TACGAACCGGCACTAAAGGC 60.390 55.000 0.00 0.00 0.00 4.35
3567 7188 1.728425 GTTACGAACCGGCACTAAAGG 59.272 52.381 0.00 0.00 0.00 3.11
3568 7189 1.387756 CGTTACGAACCGGCACTAAAG 59.612 52.381 0.00 0.00 0.00 1.85
3569 7190 1.417372 CGTTACGAACCGGCACTAAA 58.583 50.000 0.00 0.00 0.00 1.85
3570 7191 0.388391 CCGTTACGAACCGGCACTAA 60.388 55.000 6.24 0.00 37.43 2.24
3571 7192 1.212490 CCGTTACGAACCGGCACTA 59.788 57.895 6.24 0.00 37.43 2.74
3572 7193 2.048877 CCGTTACGAACCGGCACT 60.049 61.111 6.24 0.00 37.43 4.40
3576 7197 0.389687 TAAAGGCCGTTACGAACCGG 60.390 55.000 6.24 0.00 46.90 5.28
3577 7198 0.994263 CTAAAGGCCGTTACGAACCG 59.006 55.000 6.24 0.00 0.00 4.44
3578 7199 1.728425 CACTAAAGGCCGTTACGAACC 59.272 52.381 6.24 7.54 0.00 3.62
3579 7200 2.407090 ACACTAAAGGCCGTTACGAAC 58.593 47.619 6.24 0.00 0.00 3.95
3580 7201 2.676076 GACACTAAAGGCCGTTACGAA 58.324 47.619 6.24 0.00 0.00 3.85
3581 7202 1.401409 CGACACTAAAGGCCGTTACGA 60.401 52.381 6.24 0.00 0.00 3.43
3582 7203 0.986992 CGACACTAAAGGCCGTTACG 59.013 55.000 7.08 5.96 0.00 3.18
3583 7204 1.337167 ACCGACACTAAAGGCCGTTAC 60.337 52.381 7.08 0.00 0.00 2.50
3584 7205 0.968405 ACCGACACTAAAGGCCGTTA 59.032 50.000 10.85 10.85 0.00 3.18
3585 7206 0.107268 AACCGACACTAAAGGCCGTT 59.893 50.000 9.44 9.44 0.00 4.44
3586 7207 0.320160 GAACCGACACTAAAGGCCGT 60.320 55.000 0.00 0.00 0.00 5.68
3587 7208 1.349259 CGAACCGACACTAAAGGCCG 61.349 60.000 0.00 0.00 0.00 6.13
3588 7209 1.017701 CCGAACCGACACTAAAGGCC 61.018 60.000 0.00 0.00 0.00 5.19
3589 7210 1.632948 GCCGAACCGACACTAAAGGC 61.633 60.000 0.00 0.00 36.32 4.35
3590 7211 0.320073 TGCCGAACCGACACTAAAGG 60.320 55.000 0.00 0.00 0.00 3.11
3591 7212 1.193874 GTTGCCGAACCGACACTAAAG 59.806 52.381 0.00 0.00 0.00 1.85
3592 7213 1.219646 GTTGCCGAACCGACACTAAA 58.780 50.000 0.00 0.00 0.00 1.85
3593 7214 0.600782 GGTTGCCGAACCGACACTAA 60.601 55.000 0.00 0.00 42.47 2.24
3594 7215 1.005867 GGTTGCCGAACCGACACTA 60.006 57.895 0.00 0.00 42.47 2.74
3595 7216 2.280592 GGTTGCCGAACCGACACT 60.281 61.111 0.00 0.00 42.47 3.55
3606 7227 0.605589 ACTCTTTAGTGCCGGTTGCC 60.606 55.000 1.90 0.00 40.16 4.52
3607 7228 0.517316 CACTCTTTAGTGCCGGTTGC 59.483 55.000 1.90 0.00 46.28 4.17
3616 7237 3.263681 GGCTTTAGTCCCCACTCTTTAGT 59.736 47.826 0.00 0.00 35.91 2.24
3617 7238 3.519913 AGGCTTTAGTCCCCACTCTTTAG 59.480 47.826 0.00 0.00 33.62 1.85
3618 7239 3.518303 GAGGCTTTAGTCCCCACTCTTTA 59.482 47.826 0.00 0.00 33.62 1.85
3619 7240 2.306219 GAGGCTTTAGTCCCCACTCTTT 59.694 50.000 0.00 0.00 33.62 2.52
3620 7241 1.909986 GAGGCTTTAGTCCCCACTCTT 59.090 52.381 0.00 0.00 33.62 2.85
3621 7242 1.574263 GAGGCTTTAGTCCCCACTCT 58.426 55.000 0.00 0.00 33.62 3.24
3622 7243 0.542333 GGAGGCTTTAGTCCCCACTC 59.458 60.000 0.00 0.00 33.62 3.51
3623 7244 0.914902 GGGAGGCTTTAGTCCCCACT 60.915 60.000 1.96 0.00 46.23 4.00
3624 7245 1.608154 GGGAGGCTTTAGTCCCCAC 59.392 63.158 1.96 0.00 46.23 4.61
3625 7246 4.164264 GGGAGGCTTTAGTCCCCA 57.836 61.111 1.96 0.00 46.23 4.96
3642 7263 2.885135 AAAACCGGTACTAAAGGGGG 57.115 50.000 8.00 0.00 0.00 5.40
3643 7264 3.753815 TGAAAAACCGGTACTAAAGGGG 58.246 45.455 8.00 0.00 0.00 4.79
3644 7265 5.005094 TCATGAAAAACCGGTACTAAAGGG 58.995 41.667 8.00 0.00 0.00 3.95
3645 7266 6.376177 GTTCATGAAAAACCGGTACTAAAGG 58.624 40.000 8.00 0.00 0.00 3.11
3646 7267 6.376177 GGTTCATGAAAAACCGGTACTAAAG 58.624 40.000 8.00 0.00 37.06 1.85
3647 7268 6.316440 GGTTCATGAAAAACCGGTACTAAA 57.684 37.500 8.00 0.00 37.06 1.85
3648 7269 5.945466 GGTTCATGAAAAACCGGTACTAA 57.055 39.130 8.00 0.00 37.06 2.24
3656 7277 1.006825 GCGCCGGTTCATGAAAAACC 61.007 55.000 10.35 7.38 42.30 3.27
3657 7278 0.039527 AGCGCCGGTTCATGAAAAAC 60.040 50.000 10.35 0.00 0.00 2.43
3658 7279 1.524848 TAGCGCCGGTTCATGAAAAA 58.475 45.000 10.35 0.00 0.00 1.94
3659 7280 1.524848 TTAGCGCCGGTTCATGAAAA 58.475 45.000 10.35 0.00 0.00 2.29
3660 7281 1.466950 CTTTAGCGCCGGTTCATGAAA 59.533 47.619 10.35 0.00 0.00 2.69
3661 7282 1.083489 CTTTAGCGCCGGTTCATGAA 58.917 50.000 2.29 3.38 0.00 2.57
3662 7283 0.036765 ACTTTAGCGCCGGTTCATGA 60.037 50.000 2.29 0.00 0.00 3.07
3663 7284 0.096976 CACTTTAGCGCCGGTTCATG 59.903 55.000 2.29 0.00 0.00 3.07
3664 7285 0.321298 ACACTTTAGCGCCGGTTCAT 60.321 50.000 2.29 0.00 0.00 2.57
3665 7286 0.947180 GACACTTTAGCGCCGGTTCA 60.947 55.000 2.29 0.00 0.00 3.18
3666 7287 0.947180 TGACACTTTAGCGCCGGTTC 60.947 55.000 2.29 0.00 0.00 3.62
3667 7288 1.070105 TGACACTTTAGCGCCGGTT 59.930 52.632 2.29 0.00 0.00 4.44
3668 7289 1.666872 GTGACACTTTAGCGCCGGT 60.667 57.895 2.29 0.00 0.00 5.28
3669 7290 2.388232 GGTGACACTTTAGCGCCGG 61.388 63.158 2.29 0.00 0.00 6.13
3670 7291 1.666553 TGGTGACACTTTAGCGCCG 60.667 57.895 2.29 0.00 35.00 6.46
3671 7292 4.371975 TGGTGACACTTTAGCGCC 57.628 55.556 2.29 0.00 33.40 6.53
3681 7302 3.783478 CTCGTGCCACGTGGTGACA 62.783 63.158 33.92 21.49 43.14 3.58
3682 7303 3.036084 CTCGTGCCACGTGGTGAC 61.036 66.667 33.92 27.33 43.14 3.67
3683 7304 4.961511 GCTCGTGCCACGTGGTGA 62.962 66.667 33.92 26.09 43.14 4.02
3707 7328 2.616786 TAATGTCCTACGCGCACCCG 62.617 60.000 5.73 0.00 37.57 5.28
3708 7329 0.874607 CTAATGTCCTACGCGCACCC 60.875 60.000 5.73 0.00 0.00 4.61
3709 7330 0.179119 ACTAATGTCCTACGCGCACC 60.179 55.000 5.73 0.00 0.00 5.01
3710 7331 2.114825 GTACTAATGTCCTACGCGCAC 58.885 52.381 5.73 0.00 0.00 5.34
3711 7332 1.066002 GGTACTAATGTCCTACGCGCA 59.934 52.381 5.73 0.00 0.00 6.09
3712 7333 1.763634 GGTACTAATGTCCTACGCGC 58.236 55.000 5.73 0.00 0.00 6.86
3713 7334 1.334419 CCGGTACTAATGTCCTACGCG 60.334 57.143 3.53 3.53 0.00 6.01
3714 7335 1.678101 ACCGGTACTAATGTCCTACGC 59.322 52.381 4.49 0.00 0.00 4.42
3715 7336 3.378112 TCAACCGGTACTAATGTCCTACG 59.622 47.826 8.00 0.00 0.00 3.51
3716 7337 4.989279 TCAACCGGTACTAATGTCCTAC 57.011 45.455 8.00 0.00 0.00 3.18
3717 7338 6.606796 TGTTATCAACCGGTACTAATGTCCTA 59.393 38.462 8.00 0.00 0.00 2.94
3718 7339 5.422970 TGTTATCAACCGGTACTAATGTCCT 59.577 40.000 8.00 0.00 0.00 3.85
3719 7340 5.521372 GTGTTATCAACCGGTACTAATGTCC 59.479 44.000 8.00 0.00 0.00 4.02
3720 7341 5.521372 GGTGTTATCAACCGGTACTAATGTC 59.479 44.000 8.00 0.00 0.00 3.06
3721 7342 5.046448 TGGTGTTATCAACCGGTACTAATGT 60.046 40.000 8.00 0.00 0.00 2.71
3722 7343 5.421277 TGGTGTTATCAACCGGTACTAATG 58.579 41.667 8.00 1.08 0.00 1.90
3723 7344 5.680594 TGGTGTTATCAACCGGTACTAAT 57.319 39.130 8.00 1.51 0.00 1.73
3724 7345 5.480642 TTGGTGTTATCAACCGGTACTAA 57.519 39.130 8.00 1.08 0.00 2.24
3725 7346 5.663456 GATTGGTGTTATCAACCGGTACTA 58.337 41.667 8.00 0.00 0.00 1.82
3726 7347 4.510571 GATTGGTGTTATCAACCGGTACT 58.489 43.478 8.00 0.00 0.00 2.73
3727 7348 3.307782 CGATTGGTGTTATCAACCGGTAC 59.692 47.826 8.00 1.54 28.23 3.34
3728 7349 3.523547 CGATTGGTGTTATCAACCGGTA 58.476 45.455 8.00 0.00 28.23 4.02
3729 7350 2.352388 CGATTGGTGTTATCAACCGGT 58.648 47.619 0.00 0.00 28.23 5.28
3730 7351 1.668751 CCGATTGGTGTTATCAACCGG 59.331 52.381 0.00 0.00 43.74 5.28
3738 7359 9.153721 CTAAACATTTAGTACCGATTGGTGTTA 57.846 33.333 15.54 4.23 40.15 2.41
3739 7360 7.120138 CCTAAACATTTAGTACCGATTGGTGTT 59.880 37.037 15.54 5.53 41.78 3.32
3740 7361 6.596497 CCTAAACATTTAGTACCGATTGGTGT 59.404 38.462 15.54 4.51 41.78 4.16
3741 7362 6.037830 CCCTAAACATTTAGTACCGATTGGTG 59.962 42.308 15.54 0.00 41.78 4.17
3742 7363 6.117488 CCCTAAACATTTAGTACCGATTGGT 58.883 40.000 10.24 10.24 43.07 3.67
3743 7364 5.529800 CCCCTAAACATTTAGTACCGATTGG 59.470 44.000 9.87 0.00 38.73 3.16
3744 7365 5.529800 CCCCCTAAACATTTAGTACCGATTG 59.470 44.000 9.87 0.00 38.73 2.67
3745 7366 5.687780 CCCCCTAAACATTTAGTACCGATT 58.312 41.667 9.87 0.00 38.73 3.34
3746 7367 5.300411 CCCCCTAAACATTTAGTACCGAT 57.700 43.478 9.87 0.00 38.73 4.18
3747 7368 4.758773 CCCCCTAAACATTTAGTACCGA 57.241 45.455 9.87 0.00 38.73 4.69
3771 7392 2.261729 TGGAAAATAAAGCCAACCCCC 58.738 47.619 0.00 0.00 0.00 5.40
3772 7393 4.019771 TGAATGGAAAATAAAGCCAACCCC 60.020 41.667 0.00 0.00 34.95 4.95
3773 7394 5.159273 TGAATGGAAAATAAAGCCAACCC 57.841 39.130 0.00 0.00 34.95 4.11
3774 7395 7.686438 AATTGAATGGAAAATAAAGCCAACC 57.314 32.000 0.00 0.00 34.95 3.77
3775 7396 9.964303 AAAAATTGAATGGAAAATAAAGCCAAC 57.036 25.926 0.00 0.00 34.95 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.