Multiple sequence alignment - TraesCS3B01G460600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G460600 chr3B 100.000 3220 0 0 1 3220 704108020 704111239 0.000000e+00 5947
1 TraesCS3B01G460600 chr3B 96.014 1430 41 8 1330 2745 704025219 704026646 0.000000e+00 2311
2 TraesCS3B01G460600 chr3B 92.221 977 47 18 1 959 704023884 704024849 0.000000e+00 1356
3 TraesCS3B01G460600 chr3B 98.802 334 4 0 995 1328 704024849 704025182 2.140000e-166 595
4 TraesCS3B01G460600 chr3B 82.213 253 41 4 1706 1956 704324744 704324994 7.000000e-52 215
5 TraesCS3B01G460600 chr3B 84.135 208 32 1 2748 2954 61180359 61180566 1.960000e-47 200
6 TraesCS3B01G460600 chr3D 91.226 1436 93 17 1330 2745 532105082 532106504 0.000000e+00 1923
7 TraesCS3B01G460600 chr3D 92.466 438 15 2 891 1328 532104626 532105045 7.640000e-171 610
8 TraesCS3B01G460600 chr3D 80.092 437 66 14 886 1309 532169457 532169885 4.040000e-79 305
9 TraesCS3B01G460600 chr3D 83.750 240 37 2 1718 1956 532170591 532170829 3.230000e-55 226
10 TraesCS3B01G460600 chr3A 90.100 1394 97 25 1358 2723 667132529 667133909 0.000000e+00 1772
11 TraesCS3B01G460600 chr3A 90.367 436 26 3 890 1325 667132042 667132461 2.810000e-155 558
12 TraesCS3B01G460600 chr3A 82.773 238 39 2 1720 1956 667354104 667354340 9.050000e-51 211
13 TraesCS3B01G460600 chr3A 82.609 207 36 0 2750 2956 637462880 637462674 1.970000e-42 183
14 TraesCS3B01G460600 chr2A 89.205 176 19 0 2743 2918 84588123 84588298 1.500000e-53 220
15 TraesCS3B01G460600 chr2A 88.824 170 19 0 2745 2914 429389545 429389714 3.260000e-50 209
16 TraesCS3B01G460600 chr6D 85.000 220 27 5 2746 2963 372974052 372974267 5.410000e-53 219
17 TraesCS3B01G460600 chr6B 82.464 211 36 1 2746 2956 172361517 172361726 1.970000e-42 183
18 TraesCS3B01G460600 chrUn 84.530 181 28 0 2749 2929 21375731 21375551 2.550000e-41 180
19 TraesCS3B01G460600 chr5A 83.000 200 32 1 2756 2955 60525918 60525721 2.550000e-41 180
20 TraesCS3B01G460600 chr7A 84.270 178 28 0 2750 2927 26474129 26473952 1.190000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G460600 chr3B 704108020 704111239 3219 False 5947.000000 5947 100.0000 1 3220 1 chr3B.!!$F2 3219
1 TraesCS3B01G460600 chr3B 704023884 704026646 2762 False 1420.666667 2311 95.6790 1 2745 3 chr3B.!!$F4 2744
2 TraesCS3B01G460600 chr3D 532104626 532106504 1878 False 1266.500000 1923 91.8460 891 2745 2 chr3D.!!$F1 1854
3 TraesCS3B01G460600 chr3D 532169457 532170829 1372 False 265.500000 305 81.9210 886 1956 2 chr3D.!!$F2 1070
4 TraesCS3B01G460600 chr3A 667132042 667133909 1867 False 1165.000000 1772 90.2335 890 2723 2 chr3A.!!$F2 1833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 982 0.047176 TCCCTCTCTCTCCCTCTCCT 59.953 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2913 3316 0.028374 CCTTCGCGGTCAAAAACGTT 59.972 50.0 6.13 0.0 0.0 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 6.767524 TTGGTGTTTCATACAAACTTGACT 57.232 33.333 0.00 0.00 38.80 3.41
90 91 5.650266 TGGTGTTTCATACAAACTTGACTGT 59.350 36.000 0.00 0.00 38.80 3.55
93 94 6.468956 GTGTTTCATACAAACTTGACTGTGTG 59.531 38.462 0.00 0.00 38.80 3.82
94 95 6.372937 TGTTTCATACAAACTTGACTGTGTGA 59.627 34.615 0.00 0.00 40.55 3.58
138 139 3.437052 GGCCCATTTGTGGATCCTATTCT 60.437 47.826 14.23 0.00 0.00 2.40
144 145 1.831106 TGTGGATCCTATTCTGCACGT 59.169 47.619 14.23 0.00 0.00 4.49
146 147 3.449377 TGTGGATCCTATTCTGCACGTAA 59.551 43.478 14.23 0.00 0.00 3.18
147 148 3.802685 GTGGATCCTATTCTGCACGTAAC 59.197 47.826 14.23 0.00 0.00 2.50
149 150 3.802685 GGATCCTATTCTGCACGTAACAC 59.197 47.826 3.84 0.00 0.00 3.32
151 152 2.488937 TCCTATTCTGCACGTAACACGA 59.511 45.455 5.61 0.00 46.05 4.35
153 154 3.242944 CCTATTCTGCACGTAACACGATG 59.757 47.826 5.61 1.89 46.05 3.84
154 155 1.424403 TTCTGCACGTAACACGATGG 58.576 50.000 5.61 0.00 46.05 3.51
155 156 0.599060 TCTGCACGTAACACGATGGA 59.401 50.000 5.61 1.27 46.05 3.41
156 157 1.203758 TCTGCACGTAACACGATGGAT 59.796 47.619 5.61 0.00 46.05 3.41
157 158 2.424246 TCTGCACGTAACACGATGGATA 59.576 45.455 5.61 0.00 46.05 2.59
158 159 2.789339 CTGCACGTAACACGATGGATAG 59.211 50.000 5.61 0.00 46.05 2.08
159 160 1.521423 GCACGTAACACGATGGATAGC 59.479 52.381 5.61 0.00 46.05 2.97
167 168 0.459899 ACGATGGATAGCGAGCAACA 59.540 50.000 0.00 0.00 38.09 3.33
259 260 4.097892 CCTTTATTTCCGCATAGTTTGGCT 59.902 41.667 0.00 0.00 0.00 4.75
260 261 4.630894 TTATTTCCGCATAGTTTGGCTG 57.369 40.909 0.00 0.00 0.00 4.85
278 279 2.828549 GGGCCGCACATGGGTTAG 60.829 66.667 0.00 0.00 0.00 2.34
280 281 3.518068 GCCGCACATGGGTTAGGC 61.518 66.667 13.78 13.78 39.04 3.93
291 292 4.264172 ACATGGGTTAGGCATCAAGGTTTA 60.264 41.667 0.00 0.00 0.00 2.01
300 302 6.670695 AGGCATCAAGGTTTAGATTTTGTT 57.329 33.333 0.00 0.00 0.00 2.83
443 446 6.306837 TCGTGATTTTAAAAATCCATGAACGC 59.693 34.615 4.44 0.00 0.00 4.84
844 861 1.023513 AGCGCCGAGAGTAACGTACT 61.024 55.000 2.29 0.00 42.86 2.73
851 868 3.188048 CCGAGAGTAACGTACTTGTCACT 59.812 47.826 0.00 0.00 39.59 3.41
958 978 1.528309 CGCTCCCTCTCTCTCCCTC 60.528 68.421 0.00 0.00 0.00 4.30
959 979 1.930520 GCTCCCTCTCTCTCCCTCT 59.069 63.158 0.00 0.00 0.00 3.69
960 980 0.178990 GCTCCCTCTCTCTCCCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
961 981 0.478507 CTCCCTCTCTCTCCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
962 982 0.047176 TCCCTCTCTCTCCCTCTCCT 59.953 60.000 0.00 0.00 0.00 3.69
963 983 1.298693 TCCCTCTCTCTCCCTCTCCTA 59.701 57.143 0.00 0.00 0.00 2.94
964 984 2.089059 TCCCTCTCTCTCCCTCTCCTAT 60.089 54.545 0.00 0.00 0.00 2.57
965 985 2.308866 CCCTCTCTCTCCCTCTCCTATC 59.691 59.091 0.00 0.00 0.00 2.08
966 986 2.027192 CCTCTCTCTCCCTCTCCTATCG 60.027 59.091 0.00 0.00 0.00 2.92
967 987 2.903784 CTCTCTCTCCCTCTCCTATCGA 59.096 54.545 0.00 0.00 0.00 3.59
968 988 3.319220 TCTCTCTCCCTCTCCTATCGAA 58.681 50.000 0.00 0.00 0.00 3.71
969 989 3.071892 TCTCTCTCCCTCTCCTATCGAAC 59.928 52.174 0.00 0.00 0.00 3.95
970 990 2.106857 TCTCTCCCTCTCCTATCGAACC 59.893 54.545 0.00 0.00 0.00 3.62
971 991 1.850998 TCTCCCTCTCCTATCGAACCA 59.149 52.381 0.00 0.00 0.00 3.67
972 992 2.158593 TCTCCCTCTCCTATCGAACCAG 60.159 54.545 0.00 0.00 0.00 4.00
989 1027 3.333969 GCGATAGTGCGAGGCAGC 61.334 66.667 0.00 0.00 40.08 5.25
1584 1966 6.768029 TTTGCAGCATTTTCATGTAGTTTC 57.232 33.333 0.00 0.00 32.28 2.78
1656 2038 8.383619 GTTCAGTATGTTATCTGTTTAGTGCTG 58.616 37.037 0.00 0.00 37.40 4.41
1819 2202 5.221165 GGAGACCGAAAATTGTTCCAAGAAA 60.221 40.000 0.00 0.00 0.00 2.52
1836 2219 2.360165 AGAAAAGCAAGCTCCAACACAG 59.640 45.455 0.00 0.00 0.00 3.66
1844 2227 1.168407 GCTCCAACACAGCAGCTCAA 61.168 55.000 0.00 0.00 36.82 3.02
1853 2236 1.146637 CAGCAGCTCAACTCAGTCAC 58.853 55.000 0.00 0.00 0.00 3.67
1948 2331 9.771534 GCTAGTCCATCTAAGAAGATTAAACAT 57.228 33.333 0.00 0.00 40.65 2.71
1974 2369 1.273606 CTCCGGTGAGTGACAACTGAT 59.726 52.381 0.00 0.00 36.52 2.90
1975 2370 1.272490 TCCGGTGAGTGACAACTGATC 59.728 52.381 0.00 0.00 36.52 2.92
1978 2373 2.354103 CGGTGAGTGACAACTGATCCAT 60.354 50.000 0.00 0.00 36.52 3.41
1984 2379 5.221702 TGAGTGACAACTGATCCATCTGAAA 60.222 40.000 0.82 0.00 36.52 2.69
2238 2638 3.691118 GTGATGCCAGTCTATTCTTGCAA 59.309 43.478 0.00 0.00 39.03 4.08
2423 2825 3.551863 CGCTAAGAGGCCTAGTGAGATTG 60.552 52.174 4.42 0.00 0.00 2.67
2497 2899 2.954989 TGGTTTGCAGACACATTGCTAA 59.045 40.909 9.87 0.00 42.02 3.09
2611 3013 3.976942 CAGAAAACTTGCCGATGTCTTTG 59.023 43.478 0.00 0.00 0.00 2.77
2792 3195 9.468532 ACAATCAAACTAATTCTTTCTCAAAGC 57.531 29.630 0.00 0.00 38.39 3.51
2793 3196 8.919661 CAATCAAACTAATTCTTTCTCAAAGCC 58.080 33.333 0.00 0.00 38.39 4.35
2794 3197 7.581213 TCAAACTAATTCTTTCTCAAAGCCA 57.419 32.000 0.00 0.00 38.39 4.75
2795 3198 7.425606 TCAAACTAATTCTTTCTCAAAGCCAC 58.574 34.615 0.00 0.00 38.39 5.01
2796 3199 6.959639 AACTAATTCTTTCTCAAAGCCACA 57.040 33.333 0.00 0.00 38.39 4.17
2797 3200 6.319141 ACTAATTCTTTCTCAAAGCCACAC 57.681 37.500 0.00 0.00 38.39 3.82
2798 3201 3.904136 ATTCTTTCTCAAAGCCACACG 57.096 42.857 0.00 0.00 38.39 4.49
2799 3202 1.593196 TCTTTCTCAAAGCCACACGG 58.407 50.000 0.00 0.00 38.39 4.94
2809 3212 4.370182 CCACACGGCACATGTACA 57.630 55.556 0.00 0.00 24.74 2.90
2810 3213 1.866237 CCACACGGCACATGTACAC 59.134 57.895 0.00 0.00 24.74 2.90
2811 3214 0.882484 CCACACGGCACATGTACACA 60.882 55.000 0.00 0.00 24.74 3.72
2812 3215 0.512518 CACACGGCACATGTACACAG 59.487 55.000 0.00 0.00 24.74 3.66
2813 3216 0.105964 ACACGGCACATGTACACAGT 59.894 50.000 0.00 0.00 27.05 3.55
2814 3217 1.225855 CACGGCACATGTACACAGTT 58.774 50.000 0.00 0.00 0.00 3.16
2815 3218 1.601903 CACGGCACATGTACACAGTTT 59.398 47.619 0.00 0.00 0.00 2.66
2816 3219 2.803386 CACGGCACATGTACACAGTTTA 59.197 45.455 0.00 0.00 0.00 2.01
2817 3220 3.248841 CACGGCACATGTACACAGTTTAA 59.751 43.478 0.00 0.00 0.00 1.52
2818 3221 3.878103 ACGGCACATGTACACAGTTTAAA 59.122 39.130 0.00 0.00 0.00 1.52
2819 3222 4.517453 ACGGCACATGTACACAGTTTAAAT 59.483 37.500 0.00 0.00 0.00 1.40
2820 3223 5.701750 ACGGCACATGTACACAGTTTAAATA 59.298 36.000 0.00 0.00 0.00 1.40
2821 3224 6.128391 ACGGCACATGTACACAGTTTAAATAG 60.128 38.462 0.00 0.00 0.00 1.73
2822 3225 6.027749 GGCACATGTACACAGTTTAAATAGC 58.972 40.000 0.00 0.00 0.00 2.97
2823 3226 6.348950 GGCACATGTACACAGTTTAAATAGCA 60.349 38.462 0.00 0.00 0.00 3.49
2824 3227 7.250569 GCACATGTACACAGTTTAAATAGCAT 58.749 34.615 0.00 0.00 0.00 3.79
2825 3228 7.754924 GCACATGTACACAGTTTAAATAGCATT 59.245 33.333 0.00 0.00 0.00 3.56
2842 3245 9.569122 AAATAGCATTATACGATTAAACCCACT 57.431 29.630 0.00 0.00 0.00 4.00
2845 3248 8.967664 AGCATTATACGATTAAACCCACTAAA 57.032 30.769 0.00 0.00 0.00 1.85
2846 3249 8.833493 AGCATTATACGATTAAACCCACTAAAC 58.167 33.333 0.00 0.00 0.00 2.01
2847 3250 8.833493 GCATTATACGATTAAACCCACTAAACT 58.167 33.333 0.00 0.00 0.00 2.66
2859 3262 7.683437 AACCCACTAAACTTAATCTAACAGC 57.317 36.000 0.00 0.00 0.00 4.40
2860 3263 7.017319 ACCCACTAAACTTAATCTAACAGCT 57.983 36.000 0.00 0.00 0.00 4.24
2861 3264 8.142485 ACCCACTAAACTTAATCTAACAGCTA 57.858 34.615 0.00 0.00 0.00 3.32
2862 3265 8.258708 ACCCACTAAACTTAATCTAACAGCTAG 58.741 37.037 0.00 0.00 0.00 3.42
2863 3266 7.224949 CCCACTAAACTTAATCTAACAGCTAGC 59.775 40.741 6.62 6.62 0.00 3.42
2864 3267 7.224949 CCACTAAACTTAATCTAACAGCTAGCC 59.775 40.741 12.13 0.00 0.00 3.93
2865 3268 7.982354 CACTAAACTTAATCTAACAGCTAGCCT 59.018 37.037 12.13 0.00 0.00 4.58
2866 3269 8.541234 ACTAAACTTAATCTAACAGCTAGCCTT 58.459 33.333 12.13 5.77 0.00 4.35
2868 3271 8.950208 AAACTTAATCTAACAGCTAGCCTTAG 57.050 34.615 12.13 15.91 0.00 2.18
2878 3281 3.545366 GCTAGCCTTAGCCTAAACTGT 57.455 47.619 2.29 0.00 45.34 3.55
2879 3282 3.875125 GCTAGCCTTAGCCTAAACTGTT 58.125 45.455 2.29 0.00 45.34 3.16
2880 3283 3.872182 GCTAGCCTTAGCCTAAACTGTTC 59.128 47.826 2.29 0.00 45.34 3.18
2881 3284 4.383226 GCTAGCCTTAGCCTAAACTGTTCT 60.383 45.833 2.29 0.00 45.34 3.01
2882 3285 4.209307 AGCCTTAGCCTAAACTGTTCTC 57.791 45.455 0.00 0.00 41.25 2.87
2883 3286 3.841255 AGCCTTAGCCTAAACTGTTCTCT 59.159 43.478 0.00 0.00 41.25 3.10
2884 3287 3.935828 GCCTTAGCCTAAACTGTTCTCTG 59.064 47.826 0.00 0.00 0.00 3.35
2885 3288 4.508662 CCTTAGCCTAAACTGTTCTCTGG 58.491 47.826 0.00 0.00 0.00 3.86
2886 3289 4.020128 CCTTAGCCTAAACTGTTCTCTGGT 60.020 45.833 0.00 0.00 0.00 4.00
2887 3290 3.409026 AGCCTAAACTGTTCTCTGGTG 57.591 47.619 0.00 0.00 0.00 4.17
2888 3291 2.706190 AGCCTAAACTGTTCTCTGGTGT 59.294 45.455 0.00 0.00 0.00 4.16
2889 3292 2.808543 GCCTAAACTGTTCTCTGGTGTG 59.191 50.000 0.00 0.00 0.00 3.82
2890 3293 2.808543 CCTAAACTGTTCTCTGGTGTGC 59.191 50.000 0.00 0.00 0.00 4.57
2891 3294 2.418368 AAACTGTTCTCTGGTGTGCA 57.582 45.000 0.00 0.00 0.00 4.57
2892 3295 2.645838 AACTGTTCTCTGGTGTGCAT 57.354 45.000 0.00 0.00 0.00 3.96
2893 3296 2.645838 ACTGTTCTCTGGTGTGCATT 57.354 45.000 0.00 0.00 0.00 3.56
2894 3297 2.936202 ACTGTTCTCTGGTGTGCATTT 58.064 42.857 0.00 0.00 0.00 2.32
2895 3298 4.085357 ACTGTTCTCTGGTGTGCATTTA 57.915 40.909 0.00 0.00 0.00 1.40
2896 3299 4.067896 ACTGTTCTCTGGTGTGCATTTAG 58.932 43.478 0.00 0.00 0.00 1.85
2897 3300 4.067896 CTGTTCTCTGGTGTGCATTTAGT 58.932 43.478 0.00 0.00 0.00 2.24
2898 3301 5.221641 ACTGTTCTCTGGTGTGCATTTAGTA 60.222 40.000 0.00 0.00 0.00 1.82
2899 3302 5.616270 TGTTCTCTGGTGTGCATTTAGTAA 58.384 37.500 0.00 0.00 0.00 2.24
2900 3303 6.237901 TGTTCTCTGGTGTGCATTTAGTAAT 58.762 36.000 0.00 0.00 0.00 1.89
2901 3304 6.714810 TGTTCTCTGGTGTGCATTTAGTAATT 59.285 34.615 0.00 0.00 0.00 1.40
2902 3305 7.230510 TGTTCTCTGGTGTGCATTTAGTAATTT 59.769 33.333 0.00 0.00 0.00 1.82
2903 3306 8.726988 GTTCTCTGGTGTGCATTTAGTAATTTA 58.273 33.333 0.00 0.00 0.00 1.40
2904 3307 8.263940 TCTCTGGTGTGCATTTAGTAATTTAC 57.736 34.615 0.00 0.00 0.00 2.01
2905 3308 7.064134 TCTCTGGTGTGCATTTAGTAATTTACG 59.936 37.037 0.00 0.00 0.00 3.18
2906 3309 6.651643 TCTGGTGTGCATTTAGTAATTTACGT 59.348 34.615 0.00 0.00 0.00 3.57
2907 3310 7.173562 TCTGGTGTGCATTTAGTAATTTACGTT 59.826 33.333 0.00 0.00 0.00 3.99
2908 3311 7.078851 TGGTGTGCATTTAGTAATTTACGTTG 58.921 34.615 0.00 0.40 0.00 4.10
2909 3312 6.525280 GGTGTGCATTTAGTAATTTACGTTGG 59.475 38.462 0.00 0.00 0.00 3.77
2910 3313 6.033091 GTGTGCATTTAGTAATTTACGTTGGC 59.967 38.462 0.00 4.27 0.00 4.52
2911 3314 6.072397 TGTGCATTTAGTAATTTACGTTGGCT 60.072 34.615 0.00 0.00 0.00 4.75
2912 3315 6.250527 GTGCATTTAGTAATTTACGTTGGCTG 59.749 38.462 0.00 0.00 0.00 4.85
2913 3316 6.149640 TGCATTTAGTAATTTACGTTGGCTGA 59.850 34.615 0.00 0.00 0.00 4.26
2914 3317 7.024768 GCATTTAGTAATTTACGTTGGCTGAA 58.975 34.615 0.00 0.00 0.00 3.02
2915 3318 7.007995 GCATTTAGTAATTTACGTTGGCTGAAC 59.992 37.037 0.00 0.00 0.00 3.18
2925 3328 2.190161 GTTGGCTGAACGTTTTTGACC 58.810 47.619 0.46 0.99 0.00 4.02
2926 3329 0.378962 TGGCTGAACGTTTTTGACCG 59.621 50.000 0.46 0.00 0.00 4.79
2927 3330 0.933047 GGCTGAACGTTTTTGACCGC 60.933 55.000 0.46 0.00 0.00 5.68
2928 3331 1.259544 GCTGAACGTTTTTGACCGCG 61.260 55.000 0.46 0.00 0.00 6.46
2929 3332 0.302288 CTGAACGTTTTTGACCGCGA 59.698 50.000 8.23 0.00 0.00 5.87
2930 3333 0.725686 TGAACGTTTTTGACCGCGAA 59.274 45.000 8.23 0.00 0.00 4.70
2931 3334 1.267632 TGAACGTTTTTGACCGCGAAG 60.268 47.619 8.23 0.00 0.00 3.79
2933 3336 0.810823 ACGTTTTTGACCGCGAAGGA 60.811 50.000 8.23 0.00 45.00 3.36
2934 3337 0.305313 CGTTTTTGACCGCGAAGGAA 59.695 50.000 8.23 0.00 45.00 3.36
2935 3338 1.069500 CGTTTTTGACCGCGAAGGAAT 60.069 47.619 8.23 0.00 45.00 3.01
2936 3339 2.158058 CGTTTTTGACCGCGAAGGAATA 59.842 45.455 8.23 0.00 45.00 1.75
2937 3340 3.181514 CGTTTTTGACCGCGAAGGAATAT 60.182 43.478 8.23 0.00 45.00 1.28
2938 3341 4.095610 GTTTTTGACCGCGAAGGAATATG 58.904 43.478 8.23 0.00 45.00 1.78
2939 3342 1.295792 TTGACCGCGAAGGAATATGC 58.704 50.000 8.23 0.00 45.00 3.14
2957 3360 3.435186 GAAGCTCTGCCCCGCAAC 61.435 66.667 0.00 0.00 38.41 4.17
2958 3361 3.909086 GAAGCTCTGCCCCGCAACT 62.909 63.158 0.00 0.00 38.41 3.16
2959 3362 2.521958 GAAGCTCTGCCCCGCAACTA 62.522 60.000 0.00 0.00 38.41 2.24
2960 3363 2.804828 AAGCTCTGCCCCGCAACTAC 62.805 60.000 0.00 0.00 38.41 2.73
2961 3364 2.509336 CTCTGCCCCGCAACTACG 60.509 66.667 0.00 0.00 38.41 3.51
2962 3365 4.752879 TCTGCCCCGCAACTACGC 62.753 66.667 0.00 0.00 38.41 4.42
2980 3383 4.065281 GACGCCGGCAGTACCTGT 62.065 66.667 28.98 14.46 35.61 4.00
2981 3384 2.677524 ACGCCGGCAGTACCTGTA 60.678 61.111 28.98 0.00 35.61 2.74
2982 3385 2.202703 CGCCGGCAGTACCTGTAC 60.203 66.667 28.98 0.00 35.61 2.90
2983 3386 2.186125 GCCGGCAGTACCTGTACC 59.814 66.667 24.80 0.00 36.75 3.34
2984 3387 2.356780 GCCGGCAGTACCTGTACCT 61.357 63.158 24.80 0.00 36.75 3.08
2985 3388 1.814527 CCGGCAGTACCTGTACCTC 59.185 63.158 3.89 0.00 36.75 3.85
2986 3389 1.673808 CCGGCAGTACCTGTACCTCC 61.674 65.000 3.89 5.02 36.75 4.30
2987 3390 0.968901 CGGCAGTACCTGTACCTCCA 60.969 60.000 3.89 0.00 36.75 3.86
2988 3391 1.497161 GGCAGTACCTGTACCTCCAT 58.503 55.000 3.89 0.00 36.75 3.41
2989 3392 1.413077 GGCAGTACCTGTACCTCCATC 59.587 57.143 3.89 0.00 36.75 3.51
2990 3393 2.389715 GCAGTACCTGTACCTCCATCT 58.610 52.381 3.89 0.00 36.75 2.90
2991 3394 2.362717 GCAGTACCTGTACCTCCATCTC 59.637 54.545 3.89 0.00 36.75 2.75
2992 3395 2.959707 CAGTACCTGTACCTCCATCTCC 59.040 54.545 3.89 0.00 36.75 3.71
2993 3396 2.860041 AGTACCTGTACCTCCATCTCCT 59.140 50.000 3.89 0.00 36.75 3.69
2994 3397 2.463047 ACCTGTACCTCCATCTCCTC 57.537 55.000 0.00 0.00 0.00 3.71
2995 3398 1.062810 ACCTGTACCTCCATCTCCTCC 60.063 57.143 0.00 0.00 0.00 4.30
2996 3399 1.219213 CCTGTACCTCCATCTCCTCCT 59.781 57.143 0.00 0.00 0.00 3.69
2997 3400 2.447429 CCTGTACCTCCATCTCCTCCTA 59.553 54.545 0.00 0.00 0.00 2.94
2998 3401 3.076785 CCTGTACCTCCATCTCCTCCTAT 59.923 52.174 0.00 0.00 0.00 2.57
2999 3402 4.292571 CCTGTACCTCCATCTCCTCCTATA 59.707 50.000 0.00 0.00 0.00 1.31
3000 3403 5.222358 CCTGTACCTCCATCTCCTCCTATAA 60.222 48.000 0.00 0.00 0.00 0.98
3001 3404 6.485388 TGTACCTCCATCTCCTCCTATAAT 57.515 41.667 0.00 0.00 0.00 1.28
3002 3405 6.494952 TGTACCTCCATCTCCTCCTATAATC 58.505 44.000 0.00 0.00 0.00 1.75
3003 3406 5.894715 ACCTCCATCTCCTCCTATAATCT 57.105 43.478 0.00 0.00 0.00 2.40
3004 3407 6.239856 ACCTCCATCTCCTCCTATAATCTT 57.760 41.667 0.00 0.00 0.00 2.40
3005 3408 6.260663 ACCTCCATCTCCTCCTATAATCTTC 58.739 44.000 0.00 0.00 0.00 2.87
3006 3409 5.660864 CCTCCATCTCCTCCTATAATCTTCC 59.339 48.000 0.00 0.00 0.00 3.46
3007 3410 5.594777 TCCATCTCCTCCTATAATCTTCCC 58.405 45.833 0.00 0.00 0.00 3.97
3008 3411 5.319980 TCCATCTCCTCCTATAATCTTCCCT 59.680 44.000 0.00 0.00 0.00 4.20
3009 3412 6.512896 TCCATCTCCTCCTATAATCTTCCCTA 59.487 42.308 0.00 0.00 0.00 3.53
3010 3413 7.189203 TCCATCTCCTCCTATAATCTTCCCTAT 59.811 40.741 0.00 0.00 0.00 2.57
3011 3414 7.508977 CCATCTCCTCCTATAATCTTCCCTATC 59.491 44.444 0.00 0.00 0.00 2.08
3012 3415 6.987557 TCTCCTCCTATAATCTTCCCTATCC 58.012 44.000 0.00 0.00 0.00 2.59
3013 3416 6.068140 TCTCCTCCTATAATCTTCCCTATCCC 60.068 46.154 0.00 0.00 0.00 3.85
3014 3417 5.809252 TCCTCCTATAATCTTCCCTATCCCT 59.191 44.000 0.00 0.00 0.00 4.20
3015 3418 6.984590 TCCTCCTATAATCTTCCCTATCCCTA 59.015 42.308 0.00 0.00 0.00 3.53
3016 3419 7.070629 CCTCCTATAATCTTCCCTATCCCTAC 58.929 46.154 0.00 0.00 0.00 3.18
3017 3420 6.994582 TCCTATAATCTTCCCTATCCCTACC 58.005 44.000 0.00 0.00 0.00 3.18
3018 3421 6.067781 TCCTATAATCTTCCCTATCCCTACCC 60.068 46.154 0.00 0.00 0.00 3.69
3019 3422 5.650167 ATAATCTTCCCTATCCCTACCCA 57.350 43.478 0.00 0.00 0.00 4.51
3020 3423 3.569135 ATCTTCCCTATCCCTACCCAG 57.431 52.381 0.00 0.00 0.00 4.45
3021 3424 1.132817 TCTTCCCTATCCCTACCCAGC 60.133 57.143 0.00 0.00 0.00 4.85
3022 3425 0.645496 TTCCCTATCCCTACCCAGCA 59.355 55.000 0.00 0.00 0.00 4.41
3023 3426 0.645496 TCCCTATCCCTACCCAGCAA 59.355 55.000 0.00 0.00 0.00 3.91
3024 3427 1.010294 TCCCTATCCCTACCCAGCAAA 59.990 52.381 0.00 0.00 0.00 3.68
3025 3428 1.143073 CCCTATCCCTACCCAGCAAAC 59.857 57.143 0.00 0.00 0.00 2.93
3026 3429 1.202651 CCTATCCCTACCCAGCAAACG 60.203 57.143 0.00 0.00 0.00 3.60
3027 3430 1.760613 CTATCCCTACCCAGCAAACGA 59.239 52.381 0.00 0.00 0.00 3.85
3028 3431 0.252197 ATCCCTACCCAGCAAACGAC 59.748 55.000 0.00 0.00 0.00 4.34
3029 3432 1.376812 CCCTACCCAGCAAACGACC 60.377 63.158 0.00 0.00 0.00 4.79
3030 3433 1.373435 CCTACCCAGCAAACGACCA 59.627 57.895 0.00 0.00 0.00 4.02
3031 3434 0.673644 CCTACCCAGCAAACGACCAG 60.674 60.000 0.00 0.00 0.00 4.00
3032 3435 0.320374 CTACCCAGCAAACGACCAGA 59.680 55.000 0.00 0.00 0.00 3.86
3033 3436 0.320374 TACCCAGCAAACGACCAGAG 59.680 55.000 0.00 0.00 0.00 3.35
3034 3437 1.672356 CCCAGCAAACGACCAGAGG 60.672 63.158 0.00 0.00 0.00 3.69
3035 3438 1.371183 CCAGCAAACGACCAGAGGA 59.629 57.895 0.00 0.00 0.00 3.71
3036 3439 0.671781 CCAGCAAACGACCAGAGGAG 60.672 60.000 0.00 0.00 0.00 3.69
3037 3440 0.671781 CAGCAAACGACCAGAGGAGG 60.672 60.000 0.00 0.00 0.00 4.30
3038 3441 1.122019 AGCAAACGACCAGAGGAGGT 61.122 55.000 0.00 0.00 46.82 3.85
3039 3442 0.951040 GCAAACGACCAGAGGAGGTG 60.951 60.000 0.00 0.00 43.38 4.00
3040 3443 0.320771 CAAACGACCAGAGGAGGTGG 60.321 60.000 0.00 0.00 43.38 4.61
3041 3444 0.471211 AAACGACCAGAGGAGGTGGA 60.471 55.000 2.12 0.00 43.38 4.02
3042 3445 0.900647 AACGACCAGAGGAGGTGGAG 60.901 60.000 2.12 0.00 43.38 3.86
3043 3446 2.716017 CGACCAGAGGAGGTGGAGC 61.716 68.421 0.00 0.00 43.38 4.70
3044 3447 1.305718 GACCAGAGGAGGTGGAGCT 60.306 63.158 0.00 0.00 43.38 4.09
3045 3448 1.611851 ACCAGAGGAGGTGGAGCTG 60.612 63.158 0.00 0.00 41.30 4.24
3046 3449 1.305633 CCAGAGGAGGTGGAGCTGA 60.306 63.158 0.00 0.00 37.23 4.26
3047 3450 1.612395 CCAGAGGAGGTGGAGCTGAC 61.612 65.000 0.00 0.00 37.23 3.51
3048 3451 0.902048 CAGAGGAGGTGGAGCTGACA 60.902 60.000 0.00 0.00 0.00 3.58
3049 3452 0.042431 AGAGGAGGTGGAGCTGACAT 59.958 55.000 0.00 0.00 0.00 3.06
3050 3453 0.463620 GAGGAGGTGGAGCTGACATC 59.536 60.000 0.00 0.00 0.00 3.06
3051 3454 0.042431 AGGAGGTGGAGCTGACATCT 59.958 55.000 0.00 0.00 30.50 2.90
3052 3455 0.463620 GGAGGTGGAGCTGACATCTC 59.536 60.000 16.38 16.38 43.66 2.75
3060 3463 3.110447 GAGCTGACATCTCCATCCTTC 57.890 52.381 0.00 0.00 0.00 3.46
3061 3464 2.699846 GAGCTGACATCTCCATCCTTCT 59.300 50.000 0.00 0.00 0.00 2.85
3062 3465 2.435069 AGCTGACATCTCCATCCTTCTG 59.565 50.000 0.00 0.00 0.00 3.02
3063 3466 2.485124 GCTGACATCTCCATCCTTCTGG 60.485 54.545 0.00 0.00 37.66 3.86
3064 3467 2.770802 CTGACATCTCCATCCTTCTGGT 59.229 50.000 0.00 0.00 37.57 4.00
3065 3468 3.963374 CTGACATCTCCATCCTTCTGGTA 59.037 47.826 0.00 0.00 37.57 3.25
3066 3469 3.706594 TGACATCTCCATCCTTCTGGTAC 59.293 47.826 0.00 0.00 37.57 3.34
3067 3470 3.706594 GACATCTCCATCCTTCTGGTACA 59.293 47.826 0.00 0.00 37.57 2.90
3068 3471 3.452627 ACATCTCCATCCTTCTGGTACAC 59.547 47.826 0.00 0.00 37.57 2.90
3069 3472 2.467880 TCTCCATCCTTCTGGTACACC 58.532 52.381 0.00 0.00 37.57 4.16
3070 3473 1.137086 CTCCATCCTTCTGGTACACCG 59.863 57.143 0.00 0.00 39.43 4.94
3071 3474 1.191535 CCATCCTTCTGGTACACCGA 58.808 55.000 0.00 0.00 39.43 4.69
3072 3475 1.134788 CCATCCTTCTGGTACACCGAC 60.135 57.143 0.00 0.00 39.43 4.79
3073 3476 0.815734 ATCCTTCTGGTACACCGACG 59.184 55.000 0.00 0.00 39.43 5.12
3074 3477 0.250858 TCCTTCTGGTACACCGACGA 60.251 55.000 0.00 0.00 39.43 4.20
3075 3478 0.815734 CCTTCTGGTACACCGACGAT 59.184 55.000 0.00 0.00 39.43 3.73
3076 3479 1.469251 CCTTCTGGTACACCGACGATG 60.469 57.143 0.00 0.00 39.43 3.84
3077 3480 1.471287 CTTCTGGTACACCGACGATGA 59.529 52.381 0.00 0.00 39.43 2.92
3078 3481 1.092348 TCTGGTACACCGACGATGAG 58.908 55.000 0.00 0.00 39.43 2.90
3079 3482 0.100682 CTGGTACACCGACGATGAGG 59.899 60.000 0.00 0.00 39.43 3.86
3080 3483 0.609957 TGGTACACCGACGATGAGGT 60.610 55.000 0.00 0.00 42.34 3.85
3084 3487 4.736739 ACCGACGATGAGGTGAGA 57.263 55.556 0.00 0.00 39.66 3.27
3085 3488 2.181584 ACCGACGATGAGGTGAGAC 58.818 57.895 0.00 0.00 39.66 3.36
3086 3489 0.608308 ACCGACGATGAGGTGAGACA 60.608 55.000 0.00 0.00 39.66 3.41
3087 3490 0.099613 CCGACGATGAGGTGAGACAG 59.900 60.000 0.00 0.00 0.00 3.51
3088 3491 0.524392 CGACGATGAGGTGAGACAGC 60.524 60.000 0.00 0.00 0.00 4.40
3089 3492 4.391539 CGATGAGGTGAGACAGCG 57.608 61.111 0.00 0.00 39.31 5.18
3090 3493 1.875813 CGATGAGGTGAGACAGCGC 60.876 63.158 0.00 0.00 38.88 5.92
3091 3494 1.520342 GATGAGGTGAGACAGCGCC 60.520 63.158 2.29 0.00 36.92 6.53
3092 3495 2.914777 GATGAGGTGAGACAGCGCCC 62.915 65.000 2.29 0.00 39.26 6.13
3093 3496 3.386237 GAGGTGAGACAGCGCCCT 61.386 66.667 2.29 0.00 39.26 5.19
3094 3497 3.363844 GAGGTGAGACAGCGCCCTC 62.364 68.421 2.29 7.39 39.26 4.30
3095 3498 3.386237 GGTGAGACAGCGCCCTCT 61.386 66.667 18.61 12.63 32.25 3.69
3096 3499 2.183046 GTGAGACAGCGCCCTCTC 59.817 66.667 20.17 20.17 34.57 3.20
3097 3500 3.443925 TGAGACAGCGCCCTCTCG 61.444 66.667 21.05 1.22 36.47 4.04
3111 3514 4.988598 CTCGCCGTGCACACCCTT 62.989 66.667 18.64 0.00 0.00 3.95
3114 3517 2.672996 GCCGTGCACACCCTTGAT 60.673 61.111 18.64 0.00 0.00 2.57
3115 3518 2.690778 GCCGTGCACACCCTTGATC 61.691 63.158 18.64 0.00 0.00 2.92
3116 3519 2.040544 CCGTGCACACCCTTGATCC 61.041 63.158 18.64 0.00 0.00 3.36
3117 3520 2.390599 CGTGCACACCCTTGATCCG 61.391 63.158 18.64 0.00 0.00 4.18
3118 3521 2.040544 GTGCACACCCTTGATCCGG 61.041 63.158 13.17 0.00 0.00 5.14
3119 3522 2.220586 TGCACACCCTTGATCCGGA 61.221 57.895 6.61 6.61 0.00 5.14
3120 3523 1.745489 GCACACCCTTGATCCGGAC 60.745 63.158 6.12 0.90 0.00 4.79
3121 3524 1.447838 CACACCCTTGATCCGGACG 60.448 63.158 6.12 0.00 0.00 4.79
3122 3525 2.186903 CACCCTTGATCCGGACGG 59.813 66.667 6.12 3.96 0.00 4.79
3158 3561 3.791586 GCTCCTCCCCCAGCTCAC 61.792 72.222 0.00 0.00 32.48 3.51
3159 3562 3.086600 CTCCTCCCCCAGCTCACC 61.087 72.222 0.00 0.00 0.00 4.02
3160 3563 3.615811 TCCTCCCCCAGCTCACCT 61.616 66.667 0.00 0.00 0.00 4.00
3161 3564 3.406200 CCTCCCCCAGCTCACCTG 61.406 72.222 0.00 0.00 41.41 4.00
3162 3565 2.284921 CTCCCCCAGCTCACCTGA 60.285 66.667 0.00 0.00 44.64 3.86
3163 3566 1.692042 CTCCCCCAGCTCACCTGAT 60.692 63.158 0.00 0.00 44.64 2.90
3164 3567 1.690633 TCCCCCAGCTCACCTGATC 60.691 63.158 0.00 0.00 44.64 2.92
3165 3568 2.750657 CCCCCAGCTCACCTGATCC 61.751 68.421 0.00 0.00 44.64 3.36
3166 3569 1.997311 CCCCAGCTCACCTGATCCA 60.997 63.158 0.00 0.00 44.64 3.41
3167 3570 1.525923 CCCAGCTCACCTGATCCAG 59.474 63.158 0.00 0.00 44.64 3.86
3168 3571 1.153208 CCAGCTCACCTGATCCAGC 60.153 63.158 0.00 0.00 44.64 4.85
3169 3572 1.153208 CAGCTCACCTGATCCAGCC 60.153 63.158 0.00 0.00 44.64 4.85
3170 3573 1.614525 AGCTCACCTGATCCAGCCA 60.615 57.895 0.00 0.00 31.81 4.75
3171 3574 1.203441 AGCTCACCTGATCCAGCCAA 61.203 55.000 0.00 0.00 31.81 4.52
3172 3575 0.747283 GCTCACCTGATCCAGCCAAG 60.747 60.000 0.00 0.00 0.00 3.61
3173 3576 0.907486 CTCACCTGATCCAGCCAAGA 59.093 55.000 0.00 0.00 0.00 3.02
3174 3577 1.489649 CTCACCTGATCCAGCCAAGAT 59.510 52.381 0.00 0.00 0.00 2.40
3175 3578 1.487976 TCACCTGATCCAGCCAAGATC 59.512 52.381 0.00 2.13 40.51 2.75
3176 3579 1.489649 CACCTGATCCAGCCAAGATCT 59.510 52.381 9.01 0.00 40.69 2.75
3177 3580 1.489649 ACCTGATCCAGCCAAGATCTG 59.510 52.381 0.00 8.30 40.69 2.90
3178 3581 1.489649 CCTGATCCAGCCAAGATCTGT 59.510 52.381 0.00 0.00 40.69 3.41
3179 3582 2.485124 CCTGATCCAGCCAAGATCTGTC 60.485 54.545 0.00 0.00 40.69 3.51
3180 3583 1.487976 TGATCCAGCCAAGATCTGTCC 59.512 52.381 0.00 0.00 40.69 4.02
3181 3584 0.842635 ATCCAGCCAAGATCTGTCCC 59.157 55.000 0.00 0.00 0.00 4.46
3182 3585 1.153289 CCAGCCAAGATCTGTCCCG 60.153 63.158 0.00 0.00 0.00 5.14
3183 3586 1.599047 CAGCCAAGATCTGTCCCGT 59.401 57.895 0.00 0.00 0.00 5.28
3184 3587 0.460987 CAGCCAAGATCTGTCCCGTC 60.461 60.000 0.00 0.00 0.00 4.79
3185 3588 1.153349 GCCAAGATCTGTCCCGTCC 60.153 63.158 0.00 0.00 0.00 4.79
3186 3589 1.617947 GCCAAGATCTGTCCCGTCCT 61.618 60.000 0.00 0.00 0.00 3.85
3187 3590 0.461961 CCAAGATCTGTCCCGTCCTC 59.538 60.000 0.00 0.00 0.00 3.71
3188 3591 0.461961 CAAGATCTGTCCCGTCCTCC 59.538 60.000 0.00 0.00 0.00 4.30
3189 3592 0.688087 AAGATCTGTCCCGTCCTCCC 60.688 60.000 0.00 0.00 0.00 4.30
3190 3593 1.381327 GATCTGTCCCGTCCTCCCA 60.381 63.158 0.00 0.00 0.00 4.37
3191 3594 1.677637 GATCTGTCCCGTCCTCCCAC 61.678 65.000 0.00 0.00 0.00 4.61
3192 3595 2.455960 ATCTGTCCCGTCCTCCCACA 62.456 60.000 0.00 0.00 0.00 4.17
3193 3596 1.990060 CTGTCCCGTCCTCCCACAT 60.990 63.158 0.00 0.00 0.00 3.21
3194 3597 1.537889 TGTCCCGTCCTCCCACATT 60.538 57.895 0.00 0.00 0.00 2.71
3195 3598 1.131303 TGTCCCGTCCTCCCACATTT 61.131 55.000 0.00 0.00 0.00 2.32
3196 3599 0.676782 GTCCCGTCCTCCCACATTTG 60.677 60.000 0.00 0.00 0.00 2.32
3197 3600 1.378514 CCCGTCCTCCCACATTTGG 60.379 63.158 0.00 0.00 43.50 3.28
3198 3601 2.046285 CCGTCCTCCCACATTTGGC 61.046 63.158 0.00 0.00 42.35 4.52
3199 3602 2.046285 CGTCCTCCCACATTTGGCC 61.046 63.158 0.00 0.00 42.35 5.36
3200 3603 1.076549 GTCCTCCCACATTTGGCCA 59.923 57.895 0.00 0.00 42.35 5.36
3201 3604 1.076549 TCCTCCCACATTTGGCCAC 59.923 57.895 3.88 0.00 42.35 5.01
3202 3605 1.984026 CCTCCCACATTTGGCCACC 60.984 63.158 3.88 0.00 42.35 4.61
3203 3606 1.228831 CTCCCACATTTGGCCACCA 60.229 57.895 3.88 0.00 42.35 4.17
3204 3607 0.615544 CTCCCACATTTGGCCACCAT 60.616 55.000 3.88 0.00 42.35 3.55
3205 3608 0.903924 TCCCACATTTGGCCACCATG 60.904 55.000 18.85 18.85 42.35 3.66
3206 3609 1.597989 CCACATTTGGCCACCATGG 59.402 57.895 22.66 11.19 41.55 3.66
3207 3610 1.193462 CCACATTTGGCCACCATGGT 61.193 55.000 22.66 13.00 40.46 3.55
3208 3611 0.247185 CACATTTGGCCACCATGGTC 59.753 55.000 16.53 4.44 43.98 4.02
3213 3616 3.717294 GGCCACCATGGTCGTCCT 61.717 66.667 16.53 0.00 40.46 3.85
3214 3617 2.125106 GCCACCATGGTCGTCCTC 60.125 66.667 16.53 0.00 40.46 3.71
3215 3618 2.584608 CCACCATGGTCGTCCTCC 59.415 66.667 16.53 0.00 31.35 4.30
3216 3619 1.990060 CCACCATGGTCGTCCTCCT 60.990 63.158 16.53 0.00 31.35 3.69
3217 3620 1.219124 CACCATGGTCGTCCTCCTG 59.781 63.158 16.53 0.00 34.23 3.86
3218 3621 1.990060 ACCATGGTCGTCCTCCTGG 60.990 63.158 13.00 11.69 35.84 4.45
3219 3622 2.735772 CCATGGTCGTCCTCCTGGG 61.736 68.421 2.57 0.00 34.23 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.143631 GCTTGCAAGATAATAACAAATCAAAGT 57.856 29.630 30.39 0.00 0.00 2.66
88 89 3.135712 ACAACACTATTGGGTCTCACACA 59.864 43.478 0.00 0.00 0.00 3.72
90 91 5.623596 CGATACAACACTATTGGGTCTCACA 60.624 44.000 0.00 0.00 0.00 3.58
93 94 5.258456 TCGATACAACACTATTGGGTCTC 57.742 43.478 0.00 0.00 0.00 3.36
94 95 4.099573 CCTCGATACAACACTATTGGGTCT 59.900 45.833 0.00 0.00 0.00 3.85
138 139 2.804647 CTATCCATCGTGTTACGTGCA 58.195 47.619 0.00 0.00 43.14 4.57
144 145 1.679153 TGCTCGCTATCCATCGTGTTA 59.321 47.619 0.00 0.00 0.00 2.41
146 147 0.459899 TTGCTCGCTATCCATCGTGT 59.540 50.000 0.00 0.00 0.00 4.49
147 148 0.855349 GTTGCTCGCTATCCATCGTG 59.145 55.000 0.00 0.00 0.00 4.35
149 150 0.855349 GTGTTGCTCGCTATCCATCG 59.145 55.000 0.00 0.00 0.00 3.84
150 151 1.594862 GTGTGTTGCTCGCTATCCATC 59.405 52.381 0.00 0.00 0.00 3.51
151 152 1.656652 GTGTGTTGCTCGCTATCCAT 58.343 50.000 0.00 0.00 0.00 3.41
153 154 1.090052 GGGTGTGTTGCTCGCTATCC 61.090 60.000 0.00 0.00 0.00 2.59
154 155 1.090052 GGGGTGTGTTGCTCGCTATC 61.090 60.000 0.00 0.00 0.00 2.08
155 156 1.078426 GGGGTGTGTTGCTCGCTAT 60.078 57.895 0.00 0.00 0.00 2.97
156 157 1.836999 ATGGGGTGTGTTGCTCGCTA 61.837 55.000 0.00 0.00 0.00 4.26
157 158 3.196207 ATGGGGTGTGTTGCTCGCT 62.196 57.895 0.00 0.00 0.00 4.93
158 159 2.672996 ATGGGGTGTGTTGCTCGC 60.673 61.111 0.00 0.00 0.00 5.03
159 160 1.577328 GACATGGGGTGTGTTGCTCG 61.577 60.000 0.00 0.00 42.36 5.03
167 168 0.178992 CAACTGGTGACATGGGGTGT 60.179 55.000 0.00 0.00 45.83 4.16
225 226 6.574350 TGCGGAAATAAAGGAAAAAGTGAAA 58.426 32.000 0.00 0.00 0.00 2.69
226 227 6.150396 TGCGGAAATAAAGGAAAAAGTGAA 57.850 33.333 0.00 0.00 0.00 3.18
227 228 5.776173 TGCGGAAATAAAGGAAAAAGTGA 57.224 34.783 0.00 0.00 0.00 3.41
241 242 1.750778 CCAGCCAAACTATGCGGAAAT 59.249 47.619 0.00 0.00 0.00 2.17
260 261 4.434354 TAACCCATGTGCGGCCCC 62.434 66.667 0.00 0.00 0.00 5.80
266 267 1.406539 CTTGATGCCTAACCCATGTGC 59.593 52.381 0.00 0.00 0.00 4.57
271 272 2.990740 AAACCTTGATGCCTAACCCA 57.009 45.000 0.00 0.00 0.00 4.51
278 279 6.691508 AGAACAAAATCTAAACCTTGATGCC 58.308 36.000 0.00 0.00 0.00 4.40
280 281 9.971922 AGAAAGAACAAAATCTAAACCTTGATG 57.028 29.630 0.00 0.00 0.00 3.07
291 292 8.093927 TGAACAAAACCAGAAAGAACAAAATCT 58.906 29.630 0.00 0.00 0.00 2.40
378 381 6.020201 GGTGAAAAACGTAAAACATGTCAAGG 60.020 38.462 0.00 0.00 0.00 3.61
420 423 7.328249 TGAGCGTTCATGGATTTTTAAAATCAC 59.672 33.333 25.57 17.37 0.00 3.06
772 789 4.038080 GCCAACTGGTTTCGGCCG 62.038 66.667 22.12 22.12 38.67 6.13
776 793 4.038080 GCCCGCCAACTGGTTTCG 62.038 66.667 0.00 0.00 37.57 3.46
835 852 7.121974 TCTGTAGTAGTGACAAGTACGTTAC 57.878 40.000 0.00 0.00 37.30 2.50
844 861 5.652891 GGAGGAGATTCTGTAGTAGTGACAA 59.347 44.000 0.00 0.00 0.00 3.18
962 982 1.334689 CGCACTATCGCTGGTTCGATA 60.335 52.381 5.86 5.86 46.11 2.92
964 984 1.226575 CGCACTATCGCTGGTTCGA 60.227 57.895 0.00 0.00 43.09 3.71
965 985 1.202973 CTCGCACTATCGCTGGTTCG 61.203 60.000 0.00 0.00 0.00 3.95
966 986 0.872021 CCTCGCACTATCGCTGGTTC 60.872 60.000 0.00 0.00 0.00 3.62
967 987 1.141881 CCTCGCACTATCGCTGGTT 59.858 57.895 0.00 0.00 0.00 3.67
968 988 2.808315 CCTCGCACTATCGCTGGT 59.192 61.111 0.00 0.00 0.00 4.00
969 989 2.659897 GCCTCGCACTATCGCTGG 60.660 66.667 0.00 0.00 0.00 4.85
970 990 1.948138 CTGCCTCGCACTATCGCTG 60.948 63.158 0.00 0.00 33.79 5.18
971 991 2.415010 CTGCCTCGCACTATCGCT 59.585 61.111 0.00 0.00 33.79 4.93
972 992 3.333969 GCTGCCTCGCACTATCGC 61.334 66.667 0.00 0.00 33.79 4.58
1071 1112 3.147595 CCCTCCACCTCGATCGCA 61.148 66.667 11.09 0.00 0.00 5.10
1142 1183 2.029073 CGTTGAGGCCGACAGTGT 59.971 61.111 0.00 0.00 0.00 3.55
1288 1329 4.203076 CGGAGAAGGTACGGGCCG 62.203 72.222 27.06 27.06 0.00 6.13
1328 1482 5.921962 ACATTGCTACTGACATCTAGTGA 57.078 39.130 0.00 0.00 0.00 3.41
1584 1966 4.271776 TGATGTGAGATAATTGCTTCGCAG 59.728 41.667 0.00 0.00 40.61 5.18
1709 2091 7.424738 CAGATTCAGATCAAAATTTCGTCGAAG 59.575 37.037 7.86 0.00 34.60 3.79
1791 2174 3.568430 GGAACAATTTTCGGTCTCCAACT 59.432 43.478 0.00 0.00 0.00 3.16
1819 2202 0.752743 TGCTGTGTTGGAGCTTGCTT 60.753 50.000 0.00 0.00 37.35 3.91
1836 2219 1.530293 CTTGTGACTGAGTTGAGCTGC 59.470 52.381 0.00 0.00 0.00 5.25
1844 2227 1.032794 TCGTCTGCTTGTGACTGAGT 58.967 50.000 0.00 0.00 32.70 3.41
1853 2236 4.894798 GAAGTAGTTCTTCGTCTGCTTG 57.105 45.455 2.87 0.00 42.26 4.01
1874 2257 4.443978 AACCAAGGGTGATATCATCAGG 57.556 45.455 17.64 16.56 40.53 3.86
1882 2265 5.309543 TCTTCTCTTCAAACCAAGGGTGATA 59.690 40.000 0.00 0.00 35.34 2.15
1984 2379 6.179906 TGGTGAAGACTCTTGAGAGATTTT 57.820 37.500 14.61 5.77 44.74 1.82
2423 2825 4.437682 TGATGGTAATGGGGAATCACTC 57.562 45.455 0.00 0.00 0.00 3.51
2497 2899 9.661563 TGTATCGAAACCTGAAACTATTGTAAT 57.338 29.630 0.00 0.00 0.00 1.89
2517 2919 5.881447 ACTGTTCTAACTAGCACTGTATCG 58.119 41.667 0.00 0.00 32.09 2.92
2611 3013 4.499696 GGCCAGCCATTATTATGTTCACAC 60.500 45.833 3.12 0.00 35.81 3.82
2766 3169 9.468532 GCTTTGAGAAAGAATTAGTTTGATTGT 57.531 29.630 0.16 0.00 41.02 2.71
2767 3170 8.919661 GGCTTTGAGAAAGAATTAGTTTGATTG 58.080 33.333 0.16 0.00 41.02 2.67
2768 3171 8.641541 TGGCTTTGAGAAAGAATTAGTTTGATT 58.358 29.630 0.16 0.00 41.02 2.57
2769 3172 8.084684 GTGGCTTTGAGAAAGAATTAGTTTGAT 58.915 33.333 0.16 0.00 41.02 2.57
2770 3173 7.068103 TGTGGCTTTGAGAAAGAATTAGTTTGA 59.932 33.333 0.16 0.00 41.02 2.69
2771 3174 7.168135 GTGTGGCTTTGAGAAAGAATTAGTTTG 59.832 37.037 0.16 0.00 41.02 2.93
2772 3175 7.203218 GTGTGGCTTTGAGAAAGAATTAGTTT 58.797 34.615 0.16 0.00 41.02 2.66
2773 3176 6.513393 CGTGTGGCTTTGAGAAAGAATTAGTT 60.513 38.462 0.16 0.00 41.02 2.24
2774 3177 5.049405 CGTGTGGCTTTGAGAAAGAATTAGT 60.049 40.000 0.16 0.00 41.02 2.24
2775 3178 5.385617 CGTGTGGCTTTGAGAAAGAATTAG 58.614 41.667 0.16 0.00 41.02 1.73
2776 3179 4.215399 CCGTGTGGCTTTGAGAAAGAATTA 59.785 41.667 0.16 0.00 41.02 1.40
2777 3180 3.004734 CCGTGTGGCTTTGAGAAAGAATT 59.995 43.478 0.16 0.00 41.02 2.17
2778 3181 2.554032 CCGTGTGGCTTTGAGAAAGAAT 59.446 45.455 0.16 0.00 41.02 2.40
2779 3182 1.946768 CCGTGTGGCTTTGAGAAAGAA 59.053 47.619 0.16 0.00 41.02 2.52
2780 3183 1.593196 CCGTGTGGCTTTGAGAAAGA 58.407 50.000 0.16 0.00 41.02 2.52
2792 3195 0.882484 TGTGTACATGTGCCGTGTGG 60.882 55.000 9.11 0.00 35.12 4.17
2793 3196 0.512518 CTGTGTACATGTGCCGTGTG 59.487 55.000 9.11 0.00 35.12 3.82
2794 3197 0.105964 ACTGTGTACATGTGCCGTGT 59.894 50.000 9.11 2.91 37.38 4.49
2795 3198 1.225855 AACTGTGTACATGTGCCGTG 58.774 50.000 9.11 2.26 0.00 4.94
2796 3199 1.961793 AAACTGTGTACATGTGCCGT 58.038 45.000 9.11 1.71 0.00 5.68
2797 3200 4.475763 TTTAAACTGTGTACATGTGCCG 57.524 40.909 9.11 1.05 0.00 5.69
2798 3201 6.027749 GCTATTTAAACTGTGTACATGTGCC 58.972 40.000 9.11 2.01 0.00 5.01
2799 3202 6.607689 TGCTATTTAAACTGTGTACATGTGC 58.392 36.000 9.11 8.01 0.00 4.57
2816 3219 9.569122 AGTGGGTTTAATCGTATAATGCTATTT 57.431 29.630 0.00 0.00 0.00 1.40
2820 3223 8.833493 GTTTAGTGGGTTTAATCGTATAATGCT 58.167 33.333 0.00 0.00 0.00 3.79
2821 3224 8.833493 AGTTTAGTGGGTTTAATCGTATAATGC 58.167 33.333 0.00 0.00 0.00 3.56
2833 3236 9.223099 GCTGTTAGATTAAGTTTAGTGGGTTTA 57.777 33.333 0.00 0.00 0.00 2.01
2834 3237 7.942894 AGCTGTTAGATTAAGTTTAGTGGGTTT 59.057 33.333 0.00 0.00 0.00 3.27
2835 3238 7.459234 AGCTGTTAGATTAAGTTTAGTGGGTT 58.541 34.615 0.00 0.00 0.00 4.11
2836 3239 7.017319 AGCTGTTAGATTAAGTTTAGTGGGT 57.983 36.000 0.00 0.00 0.00 4.51
2837 3240 7.224949 GCTAGCTGTTAGATTAAGTTTAGTGGG 59.775 40.741 7.70 0.00 0.00 4.61
2838 3241 7.224949 GGCTAGCTGTTAGATTAAGTTTAGTGG 59.775 40.741 15.72 0.00 0.00 4.00
2839 3242 7.982354 AGGCTAGCTGTTAGATTAAGTTTAGTG 59.018 37.037 15.72 0.00 0.00 2.74
2840 3243 8.080363 AGGCTAGCTGTTAGATTAAGTTTAGT 57.920 34.615 15.72 0.00 0.00 2.24
2841 3244 8.950208 AAGGCTAGCTGTTAGATTAAGTTTAG 57.050 34.615 15.72 0.00 0.00 1.85
2843 3246 7.496263 GCTAAGGCTAGCTGTTAGATTAAGTTT 59.504 37.037 27.69 5.51 46.12 2.66
2844 3247 6.987404 GCTAAGGCTAGCTGTTAGATTAAGTT 59.013 38.462 27.69 5.73 46.12 2.66
2845 3248 6.517605 GCTAAGGCTAGCTGTTAGATTAAGT 58.482 40.000 27.69 1.55 46.12 2.24
2859 3262 5.128008 AGAGAACAGTTTAGGCTAAGGCTAG 59.872 44.000 7.09 7.57 41.54 3.42
2860 3263 5.024118 AGAGAACAGTTTAGGCTAAGGCTA 58.976 41.667 7.09 0.00 39.70 3.93
2861 3264 3.841255 AGAGAACAGTTTAGGCTAAGGCT 59.159 43.478 7.09 7.26 42.39 4.58
2862 3265 3.935828 CAGAGAACAGTTTAGGCTAAGGC 59.064 47.826 7.09 5.09 37.82 4.35
2863 3266 4.020128 ACCAGAGAACAGTTTAGGCTAAGG 60.020 45.833 7.09 3.95 0.00 2.69
2864 3267 4.932200 CACCAGAGAACAGTTTAGGCTAAG 59.068 45.833 7.09 0.00 0.00 2.18
2865 3268 4.347000 ACACCAGAGAACAGTTTAGGCTAA 59.653 41.667 2.04 2.04 0.00 3.09
2866 3269 3.901844 ACACCAGAGAACAGTTTAGGCTA 59.098 43.478 0.00 0.00 0.00 3.93
2867 3270 2.706190 ACACCAGAGAACAGTTTAGGCT 59.294 45.455 0.00 0.00 0.00 4.58
2868 3271 2.808543 CACACCAGAGAACAGTTTAGGC 59.191 50.000 0.00 0.00 0.00 3.93
2869 3272 2.808543 GCACACCAGAGAACAGTTTAGG 59.191 50.000 0.00 0.00 0.00 2.69
2870 3273 3.466836 TGCACACCAGAGAACAGTTTAG 58.533 45.455 0.00 0.00 0.00 1.85
2871 3274 3.552132 TGCACACCAGAGAACAGTTTA 57.448 42.857 0.00 0.00 0.00 2.01
2872 3275 2.418368 TGCACACCAGAGAACAGTTT 57.582 45.000 0.00 0.00 0.00 2.66
2873 3276 2.645838 ATGCACACCAGAGAACAGTT 57.354 45.000 0.00 0.00 0.00 3.16
2874 3277 2.645838 AATGCACACCAGAGAACAGT 57.354 45.000 0.00 0.00 0.00 3.55
2875 3278 4.067896 ACTAAATGCACACCAGAGAACAG 58.932 43.478 0.00 0.00 0.00 3.16
2876 3279 4.085357 ACTAAATGCACACCAGAGAACA 57.915 40.909 0.00 0.00 0.00 3.18
2877 3280 6.743575 ATTACTAAATGCACACCAGAGAAC 57.256 37.500 0.00 0.00 0.00 3.01
2878 3281 7.759489 AAATTACTAAATGCACACCAGAGAA 57.241 32.000 0.00 0.00 0.00 2.87
2879 3282 7.064134 CGTAAATTACTAAATGCACACCAGAGA 59.936 37.037 1.42 0.00 0.00 3.10
2880 3283 7.148474 ACGTAAATTACTAAATGCACACCAGAG 60.148 37.037 1.42 0.00 0.00 3.35
2881 3284 6.651643 ACGTAAATTACTAAATGCACACCAGA 59.348 34.615 1.42 0.00 0.00 3.86
2882 3285 6.837992 ACGTAAATTACTAAATGCACACCAG 58.162 36.000 1.42 0.00 0.00 4.00
2883 3286 6.804770 ACGTAAATTACTAAATGCACACCA 57.195 33.333 1.42 0.00 0.00 4.17
2884 3287 6.525280 CCAACGTAAATTACTAAATGCACACC 59.475 38.462 1.42 0.00 0.00 4.16
2885 3288 6.033091 GCCAACGTAAATTACTAAATGCACAC 59.967 38.462 1.42 0.00 0.00 3.82
2886 3289 6.072397 AGCCAACGTAAATTACTAAATGCACA 60.072 34.615 1.42 0.00 0.00 4.57
2887 3290 6.250527 CAGCCAACGTAAATTACTAAATGCAC 59.749 38.462 1.42 0.00 0.00 4.57
2888 3291 6.149640 TCAGCCAACGTAAATTACTAAATGCA 59.850 34.615 1.42 0.00 0.00 3.96
2889 3292 6.548171 TCAGCCAACGTAAATTACTAAATGC 58.452 36.000 1.42 0.00 0.00 3.56
2890 3293 8.376972 GTTCAGCCAACGTAAATTACTAAATG 57.623 34.615 1.42 0.00 0.00 2.32
2905 3308 2.190161 GGTCAAAAACGTTCAGCCAAC 58.810 47.619 0.00 0.00 0.00 3.77
2906 3309 1.202200 CGGTCAAAAACGTTCAGCCAA 60.202 47.619 0.00 0.00 0.00 4.52
2907 3310 0.378962 CGGTCAAAAACGTTCAGCCA 59.621 50.000 0.00 0.00 0.00 4.75
2908 3311 0.933047 GCGGTCAAAAACGTTCAGCC 60.933 55.000 0.00 0.00 0.00 4.85
2909 3312 1.259544 CGCGGTCAAAAACGTTCAGC 61.260 55.000 0.00 0.00 0.00 4.26
2910 3313 0.302288 TCGCGGTCAAAAACGTTCAG 59.698 50.000 6.13 0.00 0.00 3.02
2911 3314 0.725686 TTCGCGGTCAAAAACGTTCA 59.274 45.000 6.13 0.00 0.00 3.18
2912 3315 1.382163 CTTCGCGGTCAAAAACGTTC 58.618 50.000 6.13 0.00 0.00 3.95
2913 3316 0.028374 CCTTCGCGGTCAAAAACGTT 59.972 50.000 6.13 0.00 0.00 3.99
2914 3317 0.810823 TCCTTCGCGGTCAAAAACGT 60.811 50.000 6.13 0.00 0.00 3.99
2915 3318 0.305313 TTCCTTCGCGGTCAAAAACG 59.695 50.000 6.13 0.00 0.00 3.60
2916 3319 2.699251 ATTCCTTCGCGGTCAAAAAC 57.301 45.000 6.13 0.00 0.00 2.43
2917 3320 3.426963 GCATATTCCTTCGCGGTCAAAAA 60.427 43.478 6.13 0.00 0.00 1.94
2918 3321 2.096819 GCATATTCCTTCGCGGTCAAAA 59.903 45.455 6.13 0.00 0.00 2.44
2919 3322 1.668751 GCATATTCCTTCGCGGTCAAA 59.331 47.619 6.13 0.00 0.00 2.69
2920 3323 1.295792 GCATATTCCTTCGCGGTCAA 58.704 50.000 6.13 0.00 0.00 3.18
2921 3324 0.874175 CGCATATTCCTTCGCGGTCA 60.874 55.000 6.13 0.00 43.84 4.02
2922 3325 1.853319 CGCATATTCCTTCGCGGTC 59.147 57.895 6.13 0.00 43.84 4.79
2923 3326 4.027755 CGCATATTCCTTCGCGGT 57.972 55.556 6.13 0.00 43.84 5.68
2926 3329 1.193426 GAGCTTCGCATATTCCTTCGC 59.807 52.381 0.00 0.00 0.00 4.70
2927 3330 2.474359 CAGAGCTTCGCATATTCCTTCG 59.526 50.000 0.00 0.00 0.00 3.79
2928 3331 2.222911 GCAGAGCTTCGCATATTCCTTC 59.777 50.000 3.60 0.00 0.00 3.46
2929 3332 2.216898 GCAGAGCTTCGCATATTCCTT 58.783 47.619 3.60 0.00 0.00 3.36
2930 3333 1.542108 GGCAGAGCTTCGCATATTCCT 60.542 52.381 10.12 0.00 0.00 3.36
2931 3334 0.871057 GGCAGAGCTTCGCATATTCC 59.129 55.000 10.12 0.00 0.00 3.01
2932 3335 0.871057 GGGCAGAGCTTCGCATATTC 59.129 55.000 10.12 0.00 0.00 1.75
2933 3336 0.536006 GGGGCAGAGCTTCGCATATT 60.536 55.000 10.12 0.00 0.00 1.28
2934 3337 1.072159 GGGGCAGAGCTTCGCATAT 59.928 57.895 10.12 0.00 0.00 1.78
2935 3338 2.505982 GGGGCAGAGCTTCGCATA 59.494 61.111 10.12 0.00 0.00 3.14
2936 3339 4.845580 CGGGGCAGAGCTTCGCAT 62.846 66.667 10.12 0.00 0.00 4.73
2940 3343 2.521958 TAGTTGCGGGGCAGAGCTTC 62.522 60.000 0.00 0.00 40.61 3.86
2941 3344 2.592993 TAGTTGCGGGGCAGAGCTT 61.593 57.895 0.00 0.00 40.61 3.74
2942 3345 3.003173 TAGTTGCGGGGCAGAGCT 61.003 61.111 0.00 0.00 40.61 4.09
2943 3346 2.820037 GTAGTTGCGGGGCAGAGC 60.820 66.667 0.00 0.00 40.61 4.09
2944 3347 2.509336 CGTAGTTGCGGGGCAGAG 60.509 66.667 0.00 0.00 40.61 3.35
2945 3348 4.752879 GCGTAGTTGCGGGGCAGA 62.753 66.667 0.00 0.00 40.61 4.26
2972 3375 2.860041 AGGAGATGGAGGTACAGGTACT 59.140 50.000 9.26 0.00 43.88 2.73
2973 3376 3.224269 GAGGAGATGGAGGTACAGGTAC 58.776 54.545 0.93 0.93 35.40 3.34
2974 3377 2.177233 GGAGGAGATGGAGGTACAGGTA 59.823 54.545 0.00 0.00 0.00 3.08
2975 3378 1.062810 GGAGGAGATGGAGGTACAGGT 60.063 57.143 0.00 0.00 0.00 4.00
2976 3379 1.219213 AGGAGGAGATGGAGGTACAGG 59.781 57.143 0.00 0.00 0.00 4.00
2977 3380 2.765689 AGGAGGAGATGGAGGTACAG 57.234 55.000 0.00 0.00 0.00 2.74
2978 3381 5.942977 TTATAGGAGGAGATGGAGGTACA 57.057 43.478 0.00 0.00 0.00 2.90
2979 3382 6.737608 AGATTATAGGAGGAGATGGAGGTAC 58.262 44.000 0.00 0.00 0.00 3.34
2980 3383 6.996876 AGATTATAGGAGGAGATGGAGGTA 57.003 41.667 0.00 0.00 0.00 3.08
2981 3384 5.894715 AGATTATAGGAGGAGATGGAGGT 57.105 43.478 0.00 0.00 0.00 3.85
2982 3385 5.660864 GGAAGATTATAGGAGGAGATGGAGG 59.339 48.000 0.00 0.00 0.00 4.30
2983 3386 5.660864 GGGAAGATTATAGGAGGAGATGGAG 59.339 48.000 0.00 0.00 0.00 3.86
2984 3387 5.319980 AGGGAAGATTATAGGAGGAGATGGA 59.680 44.000 0.00 0.00 0.00 3.41
2985 3388 5.598754 AGGGAAGATTATAGGAGGAGATGG 58.401 45.833 0.00 0.00 0.00 3.51
2986 3389 7.508977 GGATAGGGAAGATTATAGGAGGAGATG 59.491 44.444 0.00 0.00 0.00 2.90
2987 3390 7.369209 GGGATAGGGAAGATTATAGGAGGAGAT 60.369 44.444 0.00 0.00 0.00 2.75
2988 3391 6.068140 GGGATAGGGAAGATTATAGGAGGAGA 60.068 46.154 0.00 0.00 0.00 3.71
2989 3392 6.067901 AGGGATAGGGAAGATTATAGGAGGAG 60.068 46.154 0.00 0.00 0.00 3.69
2990 3393 5.809252 AGGGATAGGGAAGATTATAGGAGGA 59.191 44.000 0.00 0.00 0.00 3.71
2991 3394 6.111564 AGGGATAGGGAAGATTATAGGAGG 57.888 45.833 0.00 0.00 0.00 4.30
2992 3395 7.070629 GGTAGGGATAGGGAAGATTATAGGAG 58.929 46.154 0.00 0.00 0.00 3.69
2993 3396 6.067781 GGGTAGGGATAGGGAAGATTATAGGA 60.068 46.154 0.00 0.00 0.00 2.94
2994 3397 6.144625 GGGTAGGGATAGGGAAGATTATAGG 58.855 48.000 0.00 0.00 0.00 2.57
2995 3398 6.753134 TGGGTAGGGATAGGGAAGATTATAG 58.247 44.000 0.00 0.00 0.00 1.31
2996 3399 6.753134 CTGGGTAGGGATAGGGAAGATTATA 58.247 44.000 0.00 0.00 0.00 0.98
2997 3400 5.604752 CTGGGTAGGGATAGGGAAGATTAT 58.395 45.833 0.00 0.00 0.00 1.28
2998 3401 4.759563 GCTGGGTAGGGATAGGGAAGATTA 60.760 50.000 0.00 0.00 0.00 1.75
2999 3402 3.875571 CTGGGTAGGGATAGGGAAGATT 58.124 50.000 0.00 0.00 0.00 2.40
3000 3403 2.495572 GCTGGGTAGGGATAGGGAAGAT 60.496 54.545 0.00 0.00 0.00 2.40
3001 3404 1.132817 GCTGGGTAGGGATAGGGAAGA 60.133 57.143 0.00 0.00 0.00 2.87
3002 3405 1.353091 GCTGGGTAGGGATAGGGAAG 58.647 60.000 0.00 0.00 0.00 3.46
3003 3406 0.645496 TGCTGGGTAGGGATAGGGAA 59.355 55.000 0.00 0.00 0.00 3.97
3004 3407 0.645496 TTGCTGGGTAGGGATAGGGA 59.355 55.000 0.00 0.00 0.00 4.20
3005 3408 1.143073 GTTTGCTGGGTAGGGATAGGG 59.857 57.143 0.00 0.00 0.00 3.53
3006 3409 1.202651 CGTTTGCTGGGTAGGGATAGG 60.203 57.143 0.00 0.00 0.00 2.57
3007 3410 1.760613 TCGTTTGCTGGGTAGGGATAG 59.239 52.381 0.00 0.00 0.00 2.08
3008 3411 1.483415 GTCGTTTGCTGGGTAGGGATA 59.517 52.381 0.00 0.00 0.00 2.59
3009 3412 0.252197 GTCGTTTGCTGGGTAGGGAT 59.748 55.000 0.00 0.00 0.00 3.85
3010 3413 1.675219 GTCGTTTGCTGGGTAGGGA 59.325 57.895 0.00 0.00 0.00 4.20
3011 3414 1.376812 GGTCGTTTGCTGGGTAGGG 60.377 63.158 0.00 0.00 0.00 3.53
3012 3415 0.673644 CTGGTCGTTTGCTGGGTAGG 60.674 60.000 0.00 0.00 0.00 3.18
3013 3416 0.320374 TCTGGTCGTTTGCTGGGTAG 59.680 55.000 0.00 0.00 0.00 3.18
3014 3417 0.320374 CTCTGGTCGTTTGCTGGGTA 59.680 55.000 0.00 0.00 0.00 3.69
3015 3418 1.071471 CTCTGGTCGTTTGCTGGGT 59.929 57.895 0.00 0.00 0.00 4.51
3016 3419 1.672356 CCTCTGGTCGTTTGCTGGG 60.672 63.158 0.00 0.00 0.00 4.45
3017 3420 0.671781 CTCCTCTGGTCGTTTGCTGG 60.672 60.000 0.00 0.00 0.00 4.85
3018 3421 0.671781 CCTCCTCTGGTCGTTTGCTG 60.672 60.000 0.00 0.00 0.00 4.41
3019 3422 1.122019 ACCTCCTCTGGTCGTTTGCT 61.122 55.000 0.00 0.00 34.86 3.91
3020 3423 0.951040 CACCTCCTCTGGTCGTTTGC 60.951 60.000 0.00 0.00 38.45 3.68
3021 3424 0.320771 CCACCTCCTCTGGTCGTTTG 60.321 60.000 0.00 0.00 38.45 2.93
3022 3425 0.471211 TCCACCTCCTCTGGTCGTTT 60.471 55.000 0.00 0.00 38.45 3.60
3023 3426 0.900647 CTCCACCTCCTCTGGTCGTT 60.901 60.000 0.00 0.00 38.45 3.85
3024 3427 1.304547 CTCCACCTCCTCTGGTCGT 60.305 63.158 0.00 0.00 38.45 4.34
3025 3428 2.716017 GCTCCACCTCCTCTGGTCG 61.716 68.421 0.00 0.00 38.45 4.79
3026 3429 1.305718 AGCTCCACCTCCTCTGGTC 60.306 63.158 0.00 0.00 38.45 4.02
3027 3430 1.611851 CAGCTCCACCTCCTCTGGT 60.612 63.158 0.00 0.00 41.77 4.00
3028 3431 1.305633 TCAGCTCCACCTCCTCTGG 60.306 63.158 0.00 0.00 0.00 3.86
3029 3432 0.902048 TGTCAGCTCCACCTCCTCTG 60.902 60.000 0.00 0.00 0.00 3.35
3030 3433 0.042431 ATGTCAGCTCCACCTCCTCT 59.958 55.000 0.00 0.00 0.00 3.69
3031 3434 0.463620 GATGTCAGCTCCACCTCCTC 59.536 60.000 0.00 0.00 0.00 3.71
3032 3435 0.042431 AGATGTCAGCTCCACCTCCT 59.958 55.000 0.00 0.00 0.00 3.69
3033 3436 0.463620 GAGATGTCAGCTCCACCTCC 59.536 60.000 6.86 0.00 0.00 4.30
3040 3443 2.699846 AGAAGGATGGAGATGTCAGCTC 59.300 50.000 9.70 9.70 0.00 4.09
3041 3444 2.435069 CAGAAGGATGGAGATGTCAGCT 59.565 50.000 0.00 0.00 0.00 4.24
3042 3445 2.485124 CCAGAAGGATGGAGATGTCAGC 60.485 54.545 0.00 0.00 43.57 4.26
3043 3446 2.770802 ACCAGAAGGATGGAGATGTCAG 59.229 50.000 0.00 0.00 43.57 3.51
3044 3447 2.837947 ACCAGAAGGATGGAGATGTCA 58.162 47.619 0.00 0.00 43.57 3.58
3045 3448 3.706594 TGTACCAGAAGGATGGAGATGTC 59.293 47.826 0.00 0.00 43.57 3.06
3046 3449 3.452627 GTGTACCAGAAGGATGGAGATGT 59.547 47.826 0.00 0.00 43.57 3.06
3047 3450 3.181461 GGTGTACCAGAAGGATGGAGATG 60.181 52.174 0.00 0.00 43.57 2.90
3048 3451 3.041946 GGTGTACCAGAAGGATGGAGAT 58.958 50.000 0.00 0.00 43.57 2.75
3049 3452 2.467880 GGTGTACCAGAAGGATGGAGA 58.532 52.381 0.00 0.00 43.57 3.71
3050 3453 1.137086 CGGTGTACCAGAAGGATGGAG 59.863 57.143 0.00 0.00 43.57 3.86
3051 3454 1.191535 CGGTGTACCAGAAGGATGGA 58.808 55.000 0.00 0.00 43.57 3.41
3052 3455 1.134788 GTCGGTGTACCAGAAGGATGG 60.135 57.143 1.50 0.00 46.47 3.51
3053 3456 1.469251 CGTCGGTGTACCAGAAGGATG 60.469 57.143 1.50 0.00 38.69 3.51
3054 3457 0.815734 CGTCGGTGTACCAGAAGGAT 59.184 55.000 1.50 0.00 38.69 3.24
3055 3458 0.250858 TCGTCGGTGTACCAGAAGGA 60.251 55.000 1.50 0.00 38.69 3.36
3056 3459 0.815734 ATCGTCGGTGTACCAGAAGG 59.184 55.000 1.50 0.00 42.21 3.46
3057 3460 1.471287 TCATCGTCGGTGTACCAGAAG 59.529 52.381 5.22 2.89 35.14 2.85
3058 3461 1.471287 CTCATCGTCGGTGTACCAGAA 59.529 52.381 5.22 0.00 35.14 3.02
3059 3462 1.092348 CTCATCGTCGGTGTACCAGA 58.908 55.000 5.22 0.00 35.14 3.86
3060 3463 0.100682 CCTCATCGTCGGTGTACCAG 59.899 60.000 5.22 0.00 35.14 4.00
3061 3464 0.609957 ACCTCATCGTCGGTGTACCA 60.610 55.000 5.22 0.00 35.14 3.25
3062 3465 0.179145 CACCTCATCGTCGGTGTACC 60.179 60.000 5.22 0.00 44.38 3.34
3063 3466 3.324170 CACCTCATCGTCGGTGTAC 57.676 57.895 5.22 0.00 44.38 2.90
3067 3470 0.608308 TGTCTCACCTCATCGTCGGT 60.608 55.000 0.00 0.00 0.00 4.69
3068 3471 0.099613 CTGTCTCACCTCATCGTCGG 59.900 60.000 0.00 0.00 0.00 4.79
3069 3472 0.524392 GCTGTCTCACCTCATCGTCG 60.524 60.000 0.00 0.00 0.00 5.12
3070 3473 0.524392 CGCTGTCTCACCTCATCGTC 60.524 60.000 0.00 0.00 0.00 4.20
3071 3474 1.508545 CGCTGTCTCACCTCATCGT 59.491 57.895 0.00 0.00 0.00 3.73
3072 3475 1.875813 GCGCTGTCTCACCTCATCG 60.876 63.158 0.00 0.00 0.00 3.84
3073 3476 1.520342 GGCGCTGTCTCACCTCATC 60.520 63.158 7.64 0.00 0.00 2.92
3074 3477 2.581354 GGCGCTGTCTCACCTCAT 59.419 61.111 7.64 0.00 0.00 2.90
3075 3478 3.695606 GGGCGCTGTCTCACCTCA 61.696 66.667 7.64 0.00 0.00 3.86
3076 3479 3.363844 GAGGGCGCTGTCTCACCTC 62.364 68.421 8.56 9.25 40.72 3.85
3077 3480 3.386237 GAGGGCGCTGTCTCACCT 61.386 66.667 8.56 2.36 0.00 4.00
3078 3481 3.363844 GAGAGGGCGCTGTCTCACC 62.364 68.421 25.34 10.81 39.30 4.02
3079 3482 2.183046 GAGAGGGCGCTGTCTCAC 59.817 66.667 25.34 16.57 39.30 3.51
3080 3483 3.443925 CGAGAGGGCGCTGTCTCA 61.444 66.667 27.71 0.00 39.43 3.27
3094 3497 4.988598 AAGGGTGTGCACGGCGAG 62.989 66.667 16.62 7.03 0.00 5.03
3097 3500 2.672996 ATCAAGGGTGTGCACGGC 60.673 61.111 13.13 7.53 0.00 5.68
3098 3501 2.040544 GGATCAAGGGTGTGCACGG 61.041 63.158 13.13 0.00 0.00 4.94
3099 3502 2.390599 CGGATCAAGGGTGTGCACG 61.391 63.158 13.13 0.00 0.00 5.34
3100 3503 2.040544 CCGGATCAAGGGTGTGCAC 61.041 63.158 10.75 10.75 0.00 4.57
3101 3504 2.220586 TCCGGATCAAGGGTGTGCA 61.221 57.895 0.00 0.00 0.00 4.57
3102 3505 1.745489 GTCCGGATCAAGGGTGTGC 60.745 63.158 7.81 0.00 0.00 4.57
3103 3506 1.447838 CGTCCGGATCAAGGGTGTG 60.448 63.158 7.81 0.00 0.00 3.82
3104 3507 2.656069 CCGTCCGGATCAAGGGTGT 61.656 63.158 7.81 0.00 37.50 4.16
3105 3508 1.895020 TTCCGTCCGGATCAAGGGTG 61.895 60.000 7.81 0.00 44.74 4.61
3106 3509 1.611261 TTCCGTCCGGATCAAGGGT 60.611 57.895 7.81 0.00 44.74 4.34
3107 3510 1.153429 GTTCCGTCCGGATCAAGGG 60.153 63.158 7.81 4.71 44.74 3.95
3108 3511 1.153429 GGTTCCGTCCGGATCAAGG 60.153 63.158 7.81 9.71 44.74 3.61
3109 3512 1.518572 CGGTTCCGTCCGGATCAAG 60.519 63.158 7.81 0.00 44.74 3.02
3110 3513 2.574929 CGGTTCCGTCCGGATCAA 59.425 61.111 7.81 0.00 44.74 2.57
3141 3544 3.791586 GTGAGCTGGGGGAGGAGC 61.792 72.222 0.00 0.00 35.28 4.70
3142 3545 3.086600 GGTGAGCTGGGGGAGGAG 61.087 72.222 0.00 0.00 0.00 3.69
3143 3546 3.615811 AGGTGAGCTGGGGGAGGA 61.616 66.667 0.00 0.00 0.00 3.71
3144 3547 3.406200 CAGGTGAGCTGGGGGAGG 61.406 72.222 3.23 0.00 0.00 4.30
3145 3548 1.692042 ATCAGGTGAGCTGGGGGAG 60.692 63.158 12.15 0.00 0.00 4.30
3146 3549 1.690633 GATCAGGTGAGCTGGGGGA 60.691 63.158 12.15 0.00 0.00 4.81
3147 3550 2.750657 GGATCAGGTGAGCTGGGGG 61.751 68.421 12.15 0.00 0.00 5.40
3148 3551 1.980784 CTGGATCAGGTGAGCTGGGG 61.981 65.000 12.15 0.00 0.00 4.96
3149 3552 1.525923 CTGGATCAGGTGAGCTGGG 59.474 63.158 12.15 0.00 0.00 4.45
3150 3553 1.153208 GCTGGATCAGGTGAGCTGG 60.153 63.158 12.15 0.00 31.21 4.85
3151 3554 1.153208 GGCTGGATCAGGTGAGCTG 60.153 63.158 5.07 5.07 31.21 4.24
3152 3555 1.203441 TTGGCTGGATCAGGTGAGCT 61.203 55.000 0.00 0.00 31.21 4.09
3153 3556 0.747283 CTTGGCTGGATCAGGTGAGC 60.747 60.000 0.00 0.00 31.21 4.26
3154 3557 0.907486 TCTTGGCTGGATCAGGTGAG 59.093 55.000 0.00 0.00 31.21 3.51
3155 3558 1.487976 GATCTTGGCTGGATCAGGTGA 59.512 52.381 12.77 0.00 39.30 4.02
3156 3559 1.489649 AGATCTTGGCTGGATCAGGTG 59.510 52.381 17.49 0.00 41.24 4.00
3157 3560 1.489649 CAGATCTTGGCTGGATCAGGT 59.510 52.381 17.49 1.02 41.24 4.00
3158 3561 1.489649 ACAGATCTTGGCTGGATCAGG 59.510 52.381 17.49 12.91 41.24 3.86
3159 3562 2.485124 GGACAGATCTTGGCTGGATCAG 60.485 54.545 17.49 13.55 41.24 2.90
3160 3563 1.487976 GGACAGATCTTGGCTGGATCA 59.512 52.381 17.49 0.00 41.24 2.92
3161 3564 1.202746 GGGACAGATCTTGGCTGGATC 60.203 57.143 0.00 10.66 39.66 3.36
3162 3565 0.842635 GGGACAGATCTTGGCTGGAT 59.157 55.000 0.00 0.00 37.69 3.41
3163 3566 1.617018 CGGGACAGATCTTGGCTGGA 61.617 60.000 0.00 0.00 37.69 3.86
3164 3567 1.153289 CGGGACAGATCTTGGCTGG 60.153 63.158 0.00 0.00 37.69 4.85
3165 3568 0.460987 GACGGGACAGATCTTGGCTG 60.461 60.000 0.00 0.00 39.26 4.85
3166 3569 1.617947 GGACGGGACAGATCTTGGCT 61.618 60.000 0.00 0.00 34.18 4.75
3167 3570 1.153349 GGACGGGACAGATCTTGGC 60.153 63.158 0.00 0.00 0.00 4.52
3168 3571 0.461961 GAGGACGGGACAGATCTTGG 59.538 60.000 0.00 0.00 0.00 3.61
3169 3572 0.461961 GGAGGACGGGACAGATCTTG 59.538 60.000 0.00 0.00 0.00 3.02
3170 3573 0.688087 GGGAGGACGGGACAGATCTT 60.688 60.000 0.00 0.00 0.00 2.40
3171 3574 1.075896 GGGAGGACGGGACAGATCT 60.076 63.158 0.00 0.00 0.00 2.75
3172 3575 1.381327 TGGGAGGACGGGACAGATC 60.381 63.158 0.00 0.00 0.00 2.75
3173 3576 1.686110 GTGGGAGGACGGGACAGAT 60.686 63.158 0.00 0.00 0.00 2.90
3174 3577 2.283676 GTGGGAGGACGGGACAGA 60.284 66.667 0.00 0.00 0.00 3.41
3175 3578 1.553690 AATGTGGGAGGACGGGACAG 61.554 60.000 0.00 0.00 0.00 3.51
3176 3579 1.131303 AAATGTGGGAGGACGGGACA 61.131 55.000 0.00 0.00 0.00 4.02
3177 3580 0.676782 CAAATGTGGGAGGACGGGAC 60.677 60.000 0.00 0.00 0.00 4.46
3178 3581 1.682849 CAAATGTGGGAGGACGGGA 59.317 57.895 0.00 0.00 0.00 5.14
3179 3582 1.378514 CCAAATGTGGGAGGACGGG 60.379 63.158 0.00 0.00 41.77 5.28
3180 3583 2.046285 GCCAAATGTGGGAGGACGG 61.046 63.158 3.47 0.00 46.09 4.79
3181 3584 2.046285 GGCCAAATGTGGGAGGACG 61.046 63.158 3.47 0.00 46.09 4.79
3182 3585 1.076549 TGGCCAAATGTGGGAGGAC 59.923 57.895 0.61 0.00 46.09 3.85
3183 3586 1.076549 GTGGCCAAATGTGGGAGGA 59.923 57.895 7.24 0.00 46.09 3.71
3184 3587 1.984026 GGTGGCCAAATGTGGGAGG 60.984 63.158 7.24 0.00 46.09 4.30
3185 3588 0.615544 ATGGTGGCCAAATGTGGGAG 60.616 55.000 7.24 0.00 46.09 4.30
3186 3589 0.903924 CATGGTGGCCAAATGTGGGA 60.904 55.000 7.24 0.00 46.09 4.37
3187 3590 1.597989 CATGGTGGCCAAATGTGGG 59.402 57.895 7.24 0.00 46.09 4.61
3189 3592 0.247185 GACCATGGTGGCCAAATGTG 59.753 55.000 25.52 17.08 42.67 3.21
3190 3593 1.250154 CGACCATGGTGGCCAAATGT 61.250 55.000 25.52 13.52 42.67 2.71
3191 3594 1.250154 ACGACCATGGTGGCCAAATG 61.250 55.000 25.52 15.01 42.67 2.32
3192 3595 0.965363 GACGACCATGGTGGCCAAAT 60.965 55.000 25.52 4.07 42.67 2.32
3193 3596 1.602323 GACGACCATGGTGGCCAAA 60.602 57.895 25.52 0.00 42.67 3.28
3194 3597 2.033448 GACGACCATGGTGGCCAA 59.967 61.111 25.52 0.00 42.67 4.52
3195 3598 4.028490 GGACGACCATGGTGGCCA 62.028 66.667 25.52 0.00 42.67 5.36
3196 3599 3.682292 GAGGACGACCATGGTGGCC 62.682 68.421 25.52 24.73 42.67 5.36
3197 3600 2.125106 GAGGACGACCATGGTGGC 60.125 66.667 25.52 16.67 42.67 5.01
3198 3601 1.990060 AGGAGGACGACCATGGTGG 60.990 63.158 25.52 24.60 45.02 4.61
3199 3602 1.219124 CAGGAGGACGACCATGGTG 59.781 63.158 25.52 16.90 38.94 4.17
3200 3603 1.990060 CCAGGAGGACGACCATGGT 60.990 63.158 19.89 19.89 38.94 3.55
3201 3604 2.735772 CCCAGGAGGACGACCATGG 61.736 68.421 11.19 11.19 38.24 3.66
3202 3605 2.903357 CCCAGGAGGACGACCATG 59.097 66.667 6.71 1.93 38.24 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.