Multiple sequence alignment - TraesCS3B01G459800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G459800 chr3B 100.000 5647 0 0 1 5647 703306852 703301206 0.000000e+00 10429.0
1 TraesCS3B01G459800 chr3A 87.240 2453 170 55 2636 5010 666230971 666228584 0.000000e+00 2663.0
2 TraesCS3B01G459800 chr3A 85.972 1775 110 56 907 2596 666232703 666230983 0.000000e+00 1770.0
3 TraesCS3B01G459800 chr3A 89.645 338 14 8 5109 5438 666228290 666227966 1.460000e-110 411.0
4 TraesCS3B01G459800 chr3A 89.189 148 15 1 3 149 666234145 666233998 3.470000e-42 183.0
5 TraesCS3B01G459800 chr3D 89.535 2045 129 37 2636 4639 531695775 531693775 0.000000e+00 2512.0
6 TraesCS3B01G459800 chr3D 85.597 1340 55 39 876 2134 531697566 531696284 0.000000e+00 1279.0
7 TraesCS3B01G459800 chr3D 93.684 475 27 3 2124 2596 531696260 531695787 0.000000e+00 708.0
8 TraesCS3B01G459800 chr3D 87.253 659 28 20 4940 5584 531689055 531688439 0.000000e+00 701.0
9 TraesCS3B01G459800 chr3D 82.382 613 67 23 3 578 531698429 531697821 3.930000e-136 496.0
10 TraesCS3B01G459800 chr3D 88.148 270 17 6 4637 4894 531693693 531693427 1.980000e-79 307.0
11 TraesCS3B01G459800 chr3D 85.621 153 14 4 1 145 531698501 531698349 2.720000e-33 154.0
12 TraesCS3B01G459800 chr3D 84.868 152 15 4 1 144 531698361 531698210 4.560000e-31 147.0
13 TraesCS3B01G459800 chr3D 84.397 141 14 4 13 145 531698629 531698489 1.280000e-26 132.0
14 TraesCS3B01G459800 chr3D 88.182 110 8 5 666 773 531697726 531697620 5.940000e-25 126.0
15 TraesCS3B01G459800 chr5B 77.465 142 27 4 490 628 517859320 517859181 4.690000e-11 80.5
16 TraesCS3B01G459800 chr5B 97.674 43 1 0 5598 5640 470523213 470523255 2.180000e-09 75.0
17 TraesCS3B01G459800 chr6B 97.727 44 1 0 2591 2634 81897983 81898026 6.070000e-10 76.8
18 TraesCS3B01G459800 chr6B 97.727 44 1 0 2591 2634 661317926 661317969 6.070000e-10 76.8
19 TraesCS3B01G459800 chr4B 97.727 44 1 0 2591 2634 44023706 44023663 6.070000e-10 76.8
20 TraesCS3B01G459800 chr4B 97.674 43 1 0 2592 2634 396917178 396917136 2.180000e-09 75.0
21 TraesCS3B01G459800 chr1B 97.727 44 1 0 2591 2634 145933386 145933429 6.070000e-10 76.8
22 TraesCS3B01G459800 chr5D 80.556 108 9 6 5545 5640 337224903 337225010 7.850000e-09 73.1
23 TraesCS3B01G459800 chr5D 95.455 44 2 0 2591 2634 146441176 146441219 2.820000e-08 71.3
24 TraesCS3B01G459800 chr2D 95.455 44 2 0 2591 2634 599425992 599425949 2.820000e-08 71.3
25 TraesCS3B01G459800 chr2D 92.308 39 3 0 5601 5639 39423387 39423349 7.900000e-04 56.5
26 TraesCS3B01G459800 chr2B 76.056 142 30 3 490 628 698212558 698212698 2.820000e-08 71.3
27 TraesCS3B01G459800 chr2B 100.000 33 0 0 2593 2625 322502104 322502072 1.700000e-05 62.1
28 TraesCS3B01G459800 chr2B 90.698 43 2 2 2585 2625 145428916 145428958 7.900000e-04 56.5
29 TraesCS3B01G459800 chr7D 97.436 39 1 0 5602 5640 549863524 549863562 3.650000e-07 67.6
30 TraesCS3B01G459800 chr2A 93.023 43 3 0 5598 5640 29930761 29930803 4.720000e-06 63.9
31 TraesCS3B01G459800 chr2A 93.023 43 3 0 5598 5640 29959589 29959547 4.720000e-06 63.9
32 TraesCS3B01G459800 chr7A 100.000 29 0 0 5602 5630 696746740 696746712 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G459800 chr3B 703301206 703306852 5646 True 10429.000000 10429 100.000000 1 5647 1 chr3B.!!$R1 5646
1 TraesCS3B01G459800 chr3A 666227966 666234145 6179 True 1256.750000 2663 88.011500 3 5438 4 chr3A.!!$R1 5435
2 TraesCS3B01G459800 chr3D 531688439 531689055 616 True 701.000000 701 87.253000 4940 5584 1 chr3D.!!$R1 644
3 TraesCS3B01G459800 chr3D 531693427 531698629 5202 True 651.222222 2512 86.934889 1 4894 9 chr3D.!!$R2 4893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 1267 0.036306 AAAAGGTCGCCGGTGAGAAT 59.964 50.0 20.25 4.13 0.00 2.40 F
778 1404 0.037232 CGGTTTCTTTCTCCTCGCCT 60.037 55.0 0.00 0.00 0.00 5.52 F
838 1464 0.106819 GGCAGCCCTGACTGATTGAT 60.107 55.0 0.00 0.00 40.25 2.57 F
1356 2052 0.179070 GTCCGGCTTCTTGATCCTCC 60.179 60.0 0.00 0.00 0.00 4.30 F
1768 2488 0.170116 GTGTGTGTGTGTGTGTTGGG 59.830 55.0 0.00 0.00 0.00 4.12 F
2755 3531 0.174845 GTGCCAGTGCCATCTACGTA 59.825 55.0 0.00 0.00 36.33 3.57 F
2756 3532 0.459899 TGCCAGTGCCATCTACGTAG 59.540 55.0 16.73 16.73 36.33 3.51 F
4406 5230 0.032615 TTGGCTGGGTTGGTTGTTCT 60.033 50.0 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 2251 0.032813 AGGGCGGTACTAGCTGGTAA 60.033 55.0 11.97 0.0 34.52 2.85 R
1749 2469 0.170116 CCCAACACACACACACACAC 59.830 55.0 0.00 0.0 0.00 3.82 R
1753 2473 0.172352 CAACCCCAACACACACACAC 59.828 55.0 0.00 0.0 0.00 3.82 R
3334 4129 0.036388 GCCCATCCGTCAGAGAACAA 60.036 55.0 0.00 0.0 0.00 2.83 R
3690 4488 0.392193 CTTCCACAGCAGCACTAGGG 60.392 60.0 0.00 0.0 0.00 3.53 R
4388 5202 0.032615 AAGAACAACCAACCCAGCCA 60.033 50.0 0.00 0.0 0.00 4.75 R
4476 5301 0.036952 CCCACTGCCTACACACAGAG 60.037 60.0 0.00 0.0 37.35 3.35 R
5584 6770 0.029567 GAGACGTATCTGCCTGGACG 59.970 60.0 2.19 0.0 41.02 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 180 1.740296 GCGCCAAGGAAGCTTCGTA 60.740 57.895 21.14 0.00 0.00 3.43
42 181 1.696832 GCGCCAAGGAAGCTTCGTAG 61.697 60.000 21.14 16.21 0.00 3.51
45 185 0.613777 CCAAGGAAGCTTCGTAGGGT 59.386 55.000 21.14 3.75 0.00 4.34
83 500 1.982395 AACATCGTCTGGCCGAGGA 60.982 57.895 17.82 17.82 40.80 3.71
86 503 2.122167 ATCGTCTGGCCGAGGAGAC 61.122 63.158 19.43 15.46 40.68 3.36
88 505 2.750637 GTCTGGCCGAGGAGACGA 60.751 66.667 5.29 0.00 35.09 4.20
90 507 4.180946 CTGGCCGAGGAGACGACG 62.181 72.222 0.00 0.00 35.09 5.12
135 561 1.226491 GCGCCAGCACAACATCATC 60.226 57.895 0.00 0.00 44.35 2.92
146 591 1.135094 AACATCATCTGGCCGAGGAT 58.865 50.000 15.69 15.69 43.46 3.24
166 611 0.712222 GCTTCGTCGGGAAAGTAACG 59.288 55.000 0.00 0.00 33.34 3.18
167 612 1.666888 GCTTCGTCGGGAAAGTAACGA 60.667 52.381 0.00 0.00 41.89 3.85
196 781 1.078759 CAACATCGTCTGGCCGAGTC 61.079 60.000 0.00 0.00 40.68 3.36
197 782 1.532604 AACATCGTCTGGCCGAGTCA 61.533 55.000 0.00 0.00 40.68 3.41
199 784 1.078759 CATCGTCTGGCCGAGTCAAC 61.079 60.000 0.00 0.00 40.68 3.18
201 786 2.932234 CGTCTGGCCGAGTCAACCT 61.932 63.158 0.00 0.00 0.00 3.50
219 804 3.840991 ACCTATATACACCGAGGAAGCA 58.159 45.455 0.00 0.00 33.04 3.91
243 828 1.589803 CGTGAAGGGGAAGAACGTTT 58.410 50.000 0.46 0.00 0.00 3.60
246 831 1.133915 TGAAGGGGAAGAACGTTTGCT 60.134 47.619 0.46 0.00 0.00 3.91
247 832 1.535896 GAAGGGGAAGAACGTTTGCTC 59.464 52.381 0.46 0.00 0.00 4.26
288 873 4.322725 GGATACACAGAGACACATGGTTCA 60.323 45.833 0.00 0.00 0.00 3.18
311 896 4.148825 GAGGCGGCCGACATGAGT 62.149 66.667 36.60 12.91 0.00 3.41
324 909 4.758251 TGAGTGCCACATCGCCCG 62.758 66.667 0.00 0.00 0.00 6.13
337 922 2.427245 CGCCCGACAGAGGAGGAAT 61.427 63.158 0.00 0.00 0.00 3.01
366 952 9.594936 TTCCTAAATTGTTTTTCCATCCTTAGA 57.405 29.630 0.00 0.00 0.00 2.10
383 969 4.468153 CCTTAGAGTGAGGAGCTAAAACCT 59.532 45.833 0.00 0.00 36.33 3.50
408 995 1.285950 GGGCTGTGGCGAAAAGTTC 59.714 57.895 0.00 0.00 39.81 3.01
428 1017 9.551734 AAAGTTCGAGTTTATACCTTTTGTACT 57.448 29.630 0.00 0.00 30.62 2.73
446 1035 8.514330 TTTGTACTGTCCACAAGAAAGTAAAT 57.486 30.769 0.00 0.00 45.18 1.40
515 1104 4.567747 CCTTGCCTAGTTTTGATAGGGTGT 60.568 45.833 1.47 0.00 40.26 4.16
519 1108 4.080751 GCCTAGTTTTGATAGGGTGTACCA 60.081 45.833 3.11 0.00 43.89 3.25
548 1138 0.328258 GGTTTGGCTAGGCTCTGGAA 59.672 55.000 18.18 0.00 0.00 3.53
549 1139 1.680249 GGTTTGGCTAGGCTCTGGAAG 60.680 57.143 18.18 0.00 0.00 3.46
550 1140 1.279271 GTTTGGCTAGGCTCTGGAAGA 59.721 52.381 18.18 0.00 43.69 2.87
551 1141 1.885049 TTGGCTAGGCTCTGGAAGAT 58.115 50.000 18.18 0.00 45.62 2.40
552 1142 1.126488 TGGCTAGGCTCTGGAAGATG 58.874 55.000 18.18 0.00 45.62 2.90
553 1143 1.343377 TGGCTAGGCTCTGGAAGATGA 60.343 52.381 18.18 0.00 45.62 2.92
578 1202 8.661352 AAATCATGAAACTTTTGGAACGAAAT 57.339 26.923 0.00 0.00 0.00 2.17
582 1206 6.639671 TGAAACTTTTGGAACGAAATTGTG 57.360 33.333 0.00 0.00 0.00 3.33
593 1217 7.258441 TGGAACGAAATTGTGACATTTAAACA 58.742 30.769 0.00 0.00 0.00 2.83
594 1218 7.923344 TGGAACGAAATTGTGACATTTAAACAT 59.077 29.630 0.00 0.00 0.00 2.71
618 1242 6.903883 TGAGTACTGGAAGAATTTATTCGC 57.096 37.500 0.00 0.00 41.56 4.70
622 1246 8.281212 AGTACTGGAAGAATTTATTCGCAAAT 57.719 30.769 0.00 0.00 41.56 2.32
623 1247 9.391006 AGTACTGGAAGAATTTATTCGCAAATA 57.609 29.630 0.00 0.00 41.56 1.40
632 1256 9.072294 AGAATTTATTCGCAAATAAAAAGGTCG 57.928 29.630 6.65 0.00 45.64 4.79
633 1257 6.620253 TTTATTCGCAAATAAAAAGGTCGC 57.380 33.333 0.00 0.00 41.90 5.19
635 1259 1.135916 TCGCAAATAAAAAGGTCGCCG 60.136 47.619 0.00 0.00 0.00 6.46
636 1260 1.624487 GCAAATAAAAAGGTCGCCGG 58.376 50.000 0.00 0.00 0.00 6.13
637 1261 1.068125 GCAAATAAAAAGGTCGCCGGT 60.068 47.619 1.90 0.00 0.00 5.28
638 1262 2.591133 CAAATAAAAAGGTCGCCGGTG 58.409 47.619 9.28 9.28 0.00 4.94
639 1263 2.188062 AATAAAAAGGTCGCCGGTGA 57.812 45.000 15.21 15.21 0.00 4.02
640 1264 1.734163 ATAAAAAGGTCGCCGGTGAG 58.266 50.000 20.25 2.18 0.00 3.51
641 1265 0.680618 TAAAAAGGTCGCCGGTGAGA 59.319 50.000 20.25 4.99 0.00 3.27
642 1266 0.179040 AAAAAGGTCGCCGGTGAGAA 60.179 50.000 20.25 0.00 0.00 2.87
643 1267 0.036306 AAAAGGTCGCCGGTGAGAAT 59.964 50.000 20.25 4.13 0.00 2.40
644 1268 0.673644 AAAGGTCGCCGGTGAGAATG 60.674 55.000 20.25 0.00 0.00 2.67
645 1269 2.511600 GGTCGCCGGTGAGAATGG 60.512 66.667 20.25 0.00 0.00 3.16
646 1270 2.511600 GTCGCCGGTGAGAATGGG 60.512 66.667 20.25 0.00 0.00 4.00
647 1271 4.467084 TCGCCGGTGAGAATGGGC 62.467 66.667 15.21 0.00 42.14 5.36
648 1272 4.776322 CGCCGGTGAGAATGGGCA 62.776 66.667 10.20 0.00 45.85 5.36
649 1273 2.361104 GCCGGTGAGAATGGGCAA 60.361 61.111 1.90 0.00 44.91 4.52
650 1274 1.976474 GCCGGTGAGAATGGGCAAA 60.976 57.895 1.90 0.00 44.91 3.68
651 1275 1.531739 GCCGGTGAGAATGGGCAAAA 61.532 55.000 1.90 0.00 44.91 2.44
652 1276 0.243636 CCGGTGAGAATGGGCAAAAC 59.756 55.000 0.00 0.00 0.00 2.43
653 1277 0.958091 CGGTGAGAATGGGCAAAACA 59.042 50.000 0.00 0.00 0.00 2.83
654 1278 1.335872 CGGTGAGAATGGGCAAAACAC 60.336 52.381 0.00 0.00 0.00 3.32
655 1279 1.335872 GGTGAGAATGGGCAAAACACG 60.336 52.381 0.00 0.00 0.00 4.49
658 1282 0.178975 AGAATGGGCAAAACACGGGA 60.179 50.000 0.00 0.00 0.00 5.14
661 1285 2.909965 GGGCAAAACACGGGAGCA 60.910 61.111 0.00 0.00 0.00 4.26
664 1288 2.644992 CAAAACACGGGAGCAGGC 59.355 61.111 0.00 0.00 0.00 4.85
772 1398 1.866925 CCGCACGGTTTCTTTCTCC 59.133 57.895 0.00 0.00 0.00 3.71
773 1399 0.602905 CCGCACGGTTTCTTTCTCCT 60.603 55.000 0.00 0.00 0.00 3.69
774 1400 0.790814 CGCACGGTTTCTTTCTCCTC 59.209 55.000 0.00 0.00 0.00 3.71
775 1401 0.790814 GCACGGTTTCTTTCTCCTCG 59.209 55.000 0.00 0.00 0.00 4.63
776 1402 0.790814 CACGGTTTCTTTCTCCTCGC 59.209 55.000 0.00 0.00 0.00 5.03
777 1403 0.320508 ACGGTTTCTTTCTCCTCGCC 60.321 55.000 0.00 0.00 0.00 5.54
778 1404 0.037232 CGGTTTCTTTCTCCTCGCCT 60.037 55.000 0.00 0.00 0.00 5.52
779 1405 1.728068 GGTTTCTTTCTCCTCGCCTC 58.272 55.000 0.00 0.00 0.00 4.70
780 1406 1.351153 GTTTCTTTCTCCTCGCCTCG 58.649 55.000 0.00 0.00 0.00 4.63
781 1407 0.389948 TTTCTTTCTCCTCGCCTCGC 60.390 55.000 0.00 0.00 0.00 5.03
782 1408 2.202810 CTTTCTCCTCGCCTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
783 1409 3.724914 CTTTCTCCTCGCCTCGCCC 62.725 68.421 0.00 0.00 0.00 6.13
812 1438 4.697756 TTCCGCCACAAGCCTCCG 62.698 66.667 0.00 0.00 38.78 4.63
835 1461 2.679716 GGGCAGCCCTGACTGATT 59.320 61.111 24.99 0.00 41.34 2.57
836 1462 1.751927 GGGCAGCCCTGACTGATTG 60.752 63.158 24.99 0.00 41.34 2.67
837 1463 1.300963 GGCAGCCCTGACTGATTGA 59.699 57.895 0.00 0.00 40.25 2.57
838 1464 0.106819 GGCAGCCCTGACTGATTGAT 60.107 55.000 0.00 0.00 40.25 2.57
839 1465 1.684248 GGCAGCCCTGACTGATTGATT 60.684 52.381 0.00 0.00 40.25 2.57
840 1466 1.404391 GCAGCCCTGACTGATTGATTG 59.596 52.381 0.00 0.00 40.25 2.67
841 1467 2.942752 GCAGCCCTGACTGATTGATTGA 60.943 50.000 0.00 0.00 40.25 2.57
845 1471 4.141228 AGCCCTGACTGATTGATTGATGAT 60.141 41.667 0.00 0.00 0.00 2.45
846 1472 4.583489 GCCCTGACTGATTGATTGATGATT 59.417 41.667 0.00 0.00 0.00 2.57
847 1473 5.766670 GCCCTGACTGATTGATTGATGATTA 59.233 40.000 0.00 0.00 0.00 1.75
848 1474 6.263842 GCCCTGACTGATTGATTGATGATTAA 59.736 38.462 0.00 0.00 0.00 1.40
849 1475 7.039923 GCCCTGACTGATTGATTGATGATTAAT 60.040 37.037 0.00 0.00 0.00 1.40
850 1476 8.297426 CCCTGACTGATTGATTGATGATTAATG 58.703 37.037 0.00 0.00 0.00 1.90
851 1477 9.063615 CCTGACTGATTGATTGATGATTAATGA 57.936 33.333 0.00 0.00 0.00 2.57
995 1621 2.915659 AGCGGTCACGTTGGAGGA 60.916 61.111 0.00 0.00 43.45 3.71
996 1622 2.432628 GCGGTCACGTTGGAGGAG 60.433 66.667 0.00 0.00 43.45 3.69
998 1624 2.663196 GGTCACGTTGGAGGAGGG 59.337 66.667 0.00 0.00 0.00 4.30
1034 1677 1.000274 CAAGCTTTGTTTTCTCGGGGG 60.000 52.381 0.00 0.00 0.00 5.40
1036 1679 1.964448 CTTTGTTTTCTCGGGGGCC 59.036 57.895 0.00 0.00 0.00 5.80
1037 1680 1.532078 TTTGTTTTCTCGGGGGCCC 60.532 57.895 15.76 15.76 0.00 5.80
1038 1681 2.014033 TTTGTTTTCTCGGGGGCCCT 62.014 55.000 24.38 0.00 0.00 5.19
1039 1682 2.014033 TTGTTTTCTCGGGGGCCCTT 62.014 55.000 24.38 0.00 0.00 3.95
1040 1683 1.677966 GTTTTCTCGGGGGCCCTTC 60.678 63.158 24.38 13.75 0.00 3.46
1041 1684 2.914310 TTTTCTCGGGGGCCCTTCC 61.914 63.158 24.38 15.03 0.00 3.46
1060 1713 1.559065 CCTCCTTCCCTTTGGGCGTA 61.559 60.000 0.00 0.00 43.94 4.42
1129 1788 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1130 1789 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1131 1790 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1150 1809 4.459089 GCGCCCACTCTCCAGTCC 62.459 72.222 0.00 0.00 0.00 3.85
1219 1912 3.335729 TCCCCCGCCTTTCCCTTC 61.336 66.667 0.00 0.00 0.00 3.46
1228 1921 4.382320 TTTCCCTTCCGCCGTCCG 62.382 66.667 0.00 0.00 0.00 4.79
1323 2019 3.628280 GAGGTGCGTCTCCGTCCAC 62.628 68.421 0.00 0.00 36.15 4.02
1324 2020 4.736896 GGTGCGTCTCCGTCCACC 62.737 72.222 0.00 0.00 39.12 4.61
1325 2021 3.681835 GTGCGTCTCCGTCCACCT 61.682 66.667 0.00 0.00 36.15 4.00
1356 2052 0.179070 GTCCGGCTTCTTGATCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
1369 2065 0.548197 ATCCTCCCCAACCACCGTAA 60.548 55.000 0.00 0.00 0.00 3.18
1439 2147 2.242564 GCGCGATTTGTTTCTTCTTCC 58.757 47.619 12.10 0.00 0.00 3.46
1458 2166 1.123928 CGGCCTTAATCCTGTCCTCT 58.876 55.000 0.00 0.00 0.00 3.69
1460 2168 2.092914 CGGCCTTAATCCTGTCCTCTTT 60.093 50.000 0.00 0.00 0.00 2.52
1462 2170 3.054361 GGCCTTAATCCTGTCCTCTTTGA 60.054 47.826 0.00 0.00 0.00 2.69
1521 2232 1.021968 GTTGCTTCTCGGTTGGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
1611 2330 2.398554 CCTCGCGTGATGTTTGGGG 61.399 63.158 10.21 0.00 0.00 4.96
1612 2331 1.375396 CTCGCGTGATGTTTGGGGA 60.375 57.895 5.77 0.00 0.00 4.81
1613 2332 0.953471 CTCGCGTGATGTTTGGGGAA 60.953 55.000 5.77 0.00 0.00 3.97
1614 2333 0.953471 TCGCGTGATGTTTGGGGAAG 60.953 55.000 5.77 0.00 0.00 3.46
1615 2334 1.212751 GCGTGATGTTTGGGGAAGC 59.787 57.895 0.00 0.00 0.00 3.86
1616 2335 1.523154 GCGTGATGTTTGGGGAAGCA 61.523 55.000 0.00 0.00 0.00 3.91
1617 2336 0.523072 CGTGATGTTTGGGGAAGCAG 59.477 55.000 0.00 0.00 0.00 4.24
1618 2337 0.890683 GTGATGTTTGGGGAAGCAGG 59.109 55.000 0.00 0.00 0.00 4.85
1619 2338 0.251742 TGATGTTTGGGGAAGCAGGG 60.252 55.000 0.00 0.00 0.00 4.45
1620 2339 0.972471 GATGTTTGGGGAAGCAGGGG 60.972 60.000 0.00 0.00 0.00 4.79
1741 2461 2.616330 GGATGGCCGTGTGTGTGTG 61.616 63.158 0.00 0.00 0.00 3.82
1742 2462 1.891919 GATGGCCGTGTGTGTGTGT 60.892 57.895 0.00 0.00 0.00 3.72
1743 2463 2.116736 GATGGCCGTGTGTGTGTGTG 62.117 60.000 0.00 0.00 0.00 3.82
1744 2464 2.822255 GGCCGTGTGTGTGTGTGT 60.822 61.111 0.00 0.00 0.00 3.72
1745 2465 2.403186 GCCGTGTGTGTGTGTGTG 59.597 61.111 0.00 0.00 0.00 3.82
1746 2466 2.395360 GCCGTGTGTGTGTGTGTGT 61.395 57.895 0.00 0.00 0.00 3.72
1747 2467 1.423450 CCGTGTGTGTGTGTGTGTG 59.577 57.895 0.00 0.00 0.00 3.82
1748 2468 1.295357 CCGTGTGTGTGTGTGTGTGT 61.295 55.000 0.00 0.00 0.00 3.72
1749 2469 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1750 2470 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1751 2471 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1752 2472 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1753 2473 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1754 2474 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1755 2475 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1756 2476 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1757 2477 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1758 2478 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1759 2479 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1760 2480 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1768 2488 0.170116 GTGTGTGTGTGTGTGTTGGG 59.830 55.000 0.00 0.00 0.00 4.12
1769 2489 0.962855 TGTGTGTGTGTGTGTTGGGG 60.963 55.000 0.00 0.00 0.00 4.96
1812 2532 2.012237 CTAGCTGCTGTTCATGGCG 58.988 57.895 13.43 0.00 0.00 5.69
1819 2539 0.955428 GCTGTTCATGGCGTCCTTCA 60.955 55.000 0.00 0.00 0.00 3.02
1825 2545 2.091541 TCATGGCGTCCTTCAATTTCC 58.908 47.619 0.00 0.00 0.00 3.13
1844 2564 0.600057 CCCTGCCTCTGTTTCTTTGC 59.400 55.000 0.00 0.00 0.00 3.68
1846 2566 0.386478 CTGCCTCTGTTTCTTTGCGC 60.386 55.000 0.00 0.00 0.00 6.09
1847 2567 1.441016 GCCTCTGTTTCTTTGCGCG 60.441 57.895 0.00 0.00 0.00 6.86
1888 2608 6.751157 TGTTTCTTTCATGTGAATGCTTCAT 58.249 32.000 0.00 0.00 42.47 2.57
1915 2637 5.816682 TCCTAATCCTCAAAGGTTTCCTTC 58.183 41.667 1.36 0.00 43.92 3.46
2107 2846 5.159273 TGGGGATTTTTACATTTTCCTGC 57.841 39.130 0.00 0.00 0.00 4.85
2120 2859 2.652313 TCCTGCGGGAAAACATTGG 58.348 52.632 13.31 0.00 38.93 3.16
2145 2919 4.309933 TGTTCAAGATGTACACTCTGCAG 58.690 43.478 7.63 7.63 0.00 4.41
2230 3005 6.204688 ACAATGCTCTTCGATGTTGAACTTTA 59.795 34.615 0.00 0.00 0.00 1.85
2266 3041 2.829741 ACTGGCAGAGTCAAGAGTTC 57.170 50.000 23.66 0.00 0.00 3.01
2306 3081 2.253452 CAGGTTTGCAGCACGCTC 59.747 61.111 0.00 0.00 43.06 5.03
2340 3115 3.788227 ACTGTCCTAAAACTGCATCCA 57.212 42.857 0.00 0.00 0.00 3.41
2358 3133 7.337938 TGCATCCAGTTAACTGATGAGAATTA 58.662 34.615 32.50 14.55 46.59 1.40
2412 3187 1.108727 TGGGCTGAAGCAAACCACAG 61.109 55.000 4.43 0.00 44.36 3.66
2543 3319 4.240881 ACATGCCATTGTTACCTCTGAT 57.759 40.909 0.00 0.00 0.00 2.90
2557 3333 7.614192 TGTTACCTCTGATCACTAACATACTGA 59.386 37.037 0.00 0.00 0.00 3.41
2581 3357 5.509498 ACTAACATACCGTGGTTACCTCTA 58.491 41.667 2.07 0.00 0.00 2.43
2591 3367 2.756760 TGGTTACCTCTAGCCACTAACG 59.243 50.000 2.07 0.00 28.63 3.18
2596 3372 3.277715 ACCTCTAGCCACTAACGTACTC 58.722 50.000 0.00 0.00 0.00 2.59
2597 3373 2.617774 CCTCTAGCCACTAACGTACTCC 59.382 54.545 0.00 0.00 0.00 3.85
2598 3374 2.617774 CTCTAGCCACTAACGTACTCCC 59.382 54.545 0.00 0.00 0.00 4.30
2599 3375 2.240667 TCTAGCCACTAACGTACTCCCT 59.759 50.000 0.00 0.00 0.00 4.20
2600 3376 1.472188 AGCCACTAACGTACTCCCTC 58.528 55.000 0.00 0.00 0.00 4.30
2601 3377 0.459078 GCCACTAACGTACTCCCTCC 59.541 60.000 0.00 0.00 0.00 4.30
2602 3378 0.737219 CCACTAACGTACTCCCTCCG 59.263 60.000 0.00 0.00 0.00 4.63
2603 3379 1.457346 CACTAACGTACTCCCTCCGT 58.543 55.000 0.00 0.00 36.17 4.69
2604 3380 1.399791 CACTAACGTACTCCCTCCGTC 59.600 57.143 0.00 0.00 32.95 4.79
2605 3381 1.020437 CTAACGTACTCCCTCCGTCC 58.980 60.000 0.00 0.00 32.95 4.79
2606 3382 0.394352 TAACGTACTCCCTCCGTCCC 60.394 60.000 0.00 0.00 32.95 4.46
2607 3383 2.044650 CGTACTCCCTCCGTCCCA 60.045 66.667 0.00 0.00 0.00 4.37
2608 3384 1.455217 CGTACTCCCTCCGTCCCAT 60.455 63.158 0.00 0.00 0.00 4.00
2609 3385 1.453762 CGTACTCCCTCCGTCCCATC 61.454 65.000 0.00 0.00 0.00 3.51
2610 3386 0.396695 GTACTCCCTCCGTCCCATCA 60.397 60.000 0.00 0.00 0.00 3.07
2611 3387 0.561184 TACTCCCTCCGTCCCATCAT 59.439 55.000 0.00 0.00 0.00 2.45
2612 3388 0.561184 ACTCCCTCCGTCCCATCATA 59.439 55.000 0.00 0.00 0.00 2.15
2613 3389 1.150135 ACTCCCTCCGTCCCATCATAT 59.850 52.381 0.00 0.00 0.00 1.78
2614 3390 2.382305 ACTCCCTCCGTCCCATCATATA 59.618 50.000 0.00 0.00 0.00 0.86
2615 3391 3.181410 ACTCCCTCCGTCCCATCATATAA 60.181 47.826 0.00 0.00 0.00 0.98
2616 3392 3.441101 TCCCTCCGTCCCATCATATAAG 58.559 50.000 0.00 0.00 0.00 1.73
2617 3393 3.076937 TCCCTCCGTCCCATCATATAAGA 59.923 47.826 0.00 0.00 0.00 2.10
2618 3394 3.838317 CCCTCCGTCCCATCATATAAGAA 59.162 47.826 0.00 0.00 0.00 2.52
2619 3395 4.322801 CCCTCCGTCCCATCATATAAGAAC 60.323 50.000 0.00 0.00 0.00 3.01
2620 3396 4.283467 CCTCCGTCCCATCATATAAGAACA 59.717 45.833 0.00 0.00 0.00 3.18
2621 3397 5.046304 CCTCCGTCCCATCATATAAGAACAT 60.046 44.000 0.00 0.00 0.00 2.71
2622 3398 6.433847 TCCGTCCCATCATATAAGAACATT 57.566 37.500 0.00 0.00 0.00 2.71
2623 3399 6.837312 TCCGTCCCATCATATAAGAACATTT 58.163 36.000 0.00 0.00 0.00 2.32
2624 3400 7.287061 TCCGTCCCATCATATAAGAACATTTT 58.713 34.615 0.00 0.00 0.00 1.82
2625 3401 7.777910 TCCGTCCCATCATATAAGAACATTTTT 59.222 33.333 0.00 0.00 0.00 1.94
2626 3402 7.862372 CCGTCCCATCATATAAGAACATTTTTG 59.138 37.037 0.00 0.00 0.00 2.44
2627 3403 8.620416 CGTCCCATCATATAAGAACATTTTTGA 58.380 33.333 0.00 0.00 0.00 2.69
2628 3404 9.736023 GTCCCATCATATAAGAACATTTTTGAC 57.264 33.333 0.00 0.00 0.00 3.18
2629 3405 9.473007 TCCCATCATATAAGAACATTTTTGACA 57.527 29.630 0.00 0.00 0.00 3.58
2630 3406 9.520204 CCCATCATATAAGAACATTTTTGACAC 57.480 33.333 0.00 0.00 0.00 3.67
2639 3415 5.241728 AGAACATTTTTGACACTAGGGAAGC 59.758 40.000 0.00 0.00 0.00 3.86
2700 3476 4.090090 ACTACCTGTATGTGAGTTGAGCT 58.910 43.478 0.00 0.00 0.00 4.09
2705 3481 2.037641 TGTATGTGAGTTGAGCTGCTGT 59.962 45.455 7.01 0.00 0.00 4.40
2742 3518 7.087409 TGTTCATTGTTTATATGAGTGCCAG 57.913 36.000 0.00 0.00 33.83 4.85
2743 3519 6.658816 TGTTCATTGTTTATATGAGTGCCAGT 59.341 34.615 0.00 0.00 33.83 4.00
2744 3520 6.682423 TCATTGTTTATATGAGTGCCAGTG 57.318 37.500 0.00 0.00 0.00 3.66
2745 3521 4.963276 TTGTTTATATGAGTGCCAGTGC 57.037 40.909 0.00 0.00 38.26 4.40
2746 3522 3.278574 TGTTTATATGAGTGCCAGTGCC 58.721 45.455 0.00 0.00 36.33 5.01
2748 3524 3.862877 TTATATGAGTGCCAGTGCCAT 57.137 42.857 0.00 0.00 36.33 4.40
2749 3525 2.267174 ATATGAGTGCCAGTGCCATC 57.733 50.000 0.00 0.00 36.33 3.51
2751 3527 1.206878 ATGAGTGCCAGTGCCATCTA 58.793 50.000 0.00 0.00 36.33 1.98
2752 3528 0.250234 TGAGTGCCAGTGCCATCTAC 59.750 55.000 0.00 0.00 36.33 2.59
2753 3529 0.807667 GAGTGCCAGTGCCATCTACG 60.808 60.000 0.00 0.00 36.33 3.51
2754 3530 1.079127 GTGCCAGTGCCATCTACGT 60.079 57.895 0.00 0.00 36.33 3.57
2755 3531 0.174845 GTGCCAGTGCCATCTACGTA 59.825 55.000 0.00 0.00 36.33 3.57
2756 3532 0.459899 TGCCAGTGCCATCTACGTAG 59.540 55.000 16.73 16.73 36.33 3.51
2757 3533 2.232284 TGCCAGTGCCATCTACGTAGT 61.232 52.381 21.53 7.12 40.50 2.73
2758 3534 1.134788 GCCAGTGCCATCTACGTAGTT 60.135 52.381 21.53 11.33 37.78 2.24
2759 3535 2.540515 CCAGTGCCATCTACGTAGTTG 58.459 52.381 21.53 21.60 37.78 3.16
2817 3593 4.640789 ACACGTCTTTGGTTGCATTTTA 57.359 36.364 0.00 0.00 0.00 1.52
2867 3644 6.918067 ATAGTCATATGGCTGTTAGCAGTA 57.082 37.500 20.17 0.00 44.75 2.74
2924 3703 6.144078 AGTTTGATTTGAACCACCACTTAC 57.856 37.500 0.00 0.00 0.00 2.34
2950 3733 6.159988 ACTGTCTAGAATGCAACTGAACTAC 58.840 40.000 0.00 0.00 0.00 2.73
3011 3794 5.983333 ACATGTAATTCCTGATCCCTCTT 57.017 39.130 0.00 0.00 0.00 2.85
3016 3799 0.914644 TTCCTGATCCCTCTTGCCAG 59.085 55.000 0.00 0.00 0.00 4.85
3043 3826 8.992835 ACAAATAAGAGATGAAAGGAAATTGC 57.007 30.769 0.00 0.00 0.00 3.56
3044 3827 8.810041 ACAAATAAGAGATGAAAGGAAATTGCT 58.190 29.630 0.00 0.00 0.00 3.91
3049 3833 6.067350 AGAGATGAAAGGAAATTGCTATCCC 58.933 40.000 0.00 0.00 36.31 3.85
3051 3835 6.197168 AGATGAAAGGAAATTGCTATCCCAA 58.803 36.000 0.00 0.00 36.31 4.12
3052 3836 6.842807 AGATGAAAGGAAATTGCTATCCCAAT 59.157 34.615 0.00 0.00 36.31 3.16
3229 4024 5.815581 TGCAATGAAGTTACCTATGGACTT 58.184 37.500 0.00 0.00 36.40 3.01
3299 4094 7.639113 TCATTACAATGGTGATTTAACTCCC 57.361 36.000 2.26 0.00 37.03 4.30
3306 4101 6.720112 ATGGTGATTTAACTCCCATCAATG 57.280 37.500 8.89 0.00 30.08 2.82
3331 4126 7.093068 TGTGTACTGGTTTGTATGTAGATGGAT 60.093 37.037 0.00 0.00 0.00 3.41
3332 4127 7.769044 GTGTACTGGTTTGTATGTAGATGGATT 59.231 37.037 0.00 0.00 0.00 3.01
3333 4128 7.768582 TGTACTGGTTTGTATGTAGATGGATTG 59.231 37.037 0.00 0.00 0.00 2.67
3334 4129 6.721318 ACTGGTTTGTATGTAGATGGATTGT 58.279 36.000 0.00 0.00 0.00 2.71
3346 4141 4.248859 AGATGGATTGTTGTTCTCTGACG 58.751 43.478 0.00 0.00 0.00 4.35
3543 4338 2.351157 GCTGGTTGATTGCTCACAAGAC 60.351 50.000 0.00 0.00 39.69 3.01
3561 4356 0.732880 ACAGTGAGAATCGTTCGCCG 60.733 55.000 0.00 0.00 38.61 6.46
3610 4408 1.108727 TCCACCTTGTGCTTGGCTTG 61.109 55.000 0.00 0.00 31.34 4.01
3623 4421 3.753272 GCTTGGCTTGACAGTATTTCTGA 59.247 43.478 1.79 0.00 46.27 3.27
3626 4424 6.238320 GCTTGGCTTGACAGTATTTCTGATAG 60.238 42.308 1.79 0.00 46.27 2.08
3636 4434 5.638657 CAGTATTTCTGATAGCTGCCATCTC 59.361 44.000 9.38 0.00 46.27 2.75
3638 4436 4.333913 TTTCTGATAGCTGCCATCTCTC 57.666 45.455 9.38 0.00 0.00 3.20
3647 4445 4.450053 AGCTGCCATCTCTCAAGTATTTC 58.550 43.478 0.00 0.00 0.00 2.17
3649 4447 4.880696 GCTGCCATCTCTCAAGTATTTCTT 59.119 41.667 0.00 0.00 36.75 2.52
3663 4461 7.874940 CAAGTATTTCTTGTTTCTCACCATGA 58.125 34.615 0.00 0.00 45.89 3.07
3670 4468 5.474532 TCTTGTTTCTCACCATGATTTCTGG 59.525 40.000 0.00 0.00 39.80 3.86
3676 4474 4.782691 TCTCACCATGATTTCTGGTCCTTA 59.217 41.667 0.00 0.00 45.23 2.69
3690 4488 4.079253 TGGTCCTTATTGACAGGAAAAGC 58.921 43.478 0.00 0.00 42.35 3.51
3729 4527 6.558775 TGGAAGCCAATATCTCTGGTTAGTAT 59.441 38.462 0.00 0.00 36.24 2.12
3738 4536 9.845214 AATATCTCTGGTTAGTATAATGGTCCT 57.155 33.333 0.00 0.00 0.00 3.85
3741 4539 7.239438 TCTCTGGTTAGTATAATGGTCCTAGG 58.761 42.308 0.82 0.82 0.00 3.02
3794 4592 5.930837 AAAGCTACTGATGCTAGAACTCT 57.069 39.130 0.00 0.00 40.22 3.24
3805 4603 5.424121 TGCTAGAACTCTTTTGTTTCAGC 57.576 39.130 0.00 0.00 37.45 4.26
3821 4619 5.989168 TGTTTCAGCTCTTCAGAATTCGTTA 59.011 36.000 0.00 0.00 0.00 3.18
3822 4620 6.481976 TGTTTCAGCTCTTCAGAATTCGTTAA 59.518 34.615 0.00 0.00 0.00 2.01
3905 4703 2.868899 CCTCTGAAAGGTTTGCTTCCT 58.131 47.619 0.00 0.00 40.67 3.36
3906 4704 2.555757 CCTCTGAAAGGTTTGCTTCCTG 59.444 50.000 0.00 0.00 40.67 3.86
3908 4706 3.480470 TCTGAAAGGTTTGCTTCCTGAG 58.520 45.455 0.00 0.00 35.27 3.35
3911 4709 2.278332 AAGGTTTGCTTCCTGAGTCC 57.722 50.000 0.00 0.00 35.27 3.85
3913 4711 1.707427 AGGTTTGCTTCCTGAGTCCAT 59.293 47.619 0.00 0.00 33.62 3.41
3914 4712 1.815003 GGTTTGCTTCCTGAGTCCATG 59.185 52.381 0.00 0.00 0.00 3.66
3920 4722 2.676463 GCTTCCTGAGTCCATGACTGTC 60.676 54.545 0.69 0.00 43.53 3.51
3944 4746 3.616956 TCAGAGCACCCATTAGTTCAG 57.383 47.619 0.00 0.00 0.00 3.02
3966 4769 6.015434 TCAGCTATGTTTCACACAGTTCTCTA 60.015 38.462 0.00 0.00 39.40 2.43
3973 4776 5.673337 TTCACACAGTTCTCTAATTGCAC 57.327 39.130 0.00 0.00 0.00 4.57
3985 4788 2.642139 AATTGCACAGTGCTGCATAC 57.358 45.000 25.83 0.00 46.47 2.39
3987 4790 1.608055 TTGCACAGTGCTGCATACTT 58.392 45.000 25.83 0.00 46.47 2.24
4015 4829 3.525537 AGTCGCTCATACATGGTTCTTG 58.474 45.455 0.00 0.00 0.00 3.02
4109 4923 3.197790 CTCATCAAGCCGTGCGGG 61.198 66.667 12.82 0.00 39.58 6.13
4347 5161 1.883084 CCGCCGTGCTAGCTTTAGG 60.883 63.158 17.23 14.06 0.00 2.69
4386 5200 1.818674 GGCCAAAGAAGTGTGTATGGG 59.181 52.381 0.00 0.00 0.00 4.00
4388 5202 2.890945 GCCAAAGAAGTGTGTATGGGTT 59.109 45.455 0.00 0.00 0.00 4.11
4399 5223 0.970427 GTATGGGTTGGCTGGGTTGG 60.970 60.000 0.00 0.00 0.00 3.77
4401 5225 2.123033 GGGTTGGCTGGGTTGGTT 60.123 61.111 0.00 0.00 0.00 3.67
4402 5226 2.506957 GGGTTGGCTGGGTTGGTTG 61.507 63.158 0.00 0.00 0.00 3.77
4405 5229 0.104120 GTTGGCTGGGTTGGTTGTTC 59.896 55.000 0.00 0.00 0.00 3.18
4406 5230 0.032615 TTGGCTGGGTTGGTTGTTCT 60.033 50.000 0.00 0.00 0.00 3.01
4415 5239 2.483538 GGTTGGTTGTTCTTGCTGCAAT 60.484 45.455 16.38 0.00 0.00 3.56
4425 5249 4.970662 TCTTGCTGCAATATTTGACCTC 57.029 40.909 16.38 0.00 0.00 3.85
4428 5252 3.018856 TGCTGCAATATTTGACCTCTGG 58.981 45.455 0.00 0.00 0.00 3.86
4432 5256 3.010027 TGCAATATTTGACCTCTGGTGGA 59.990 43.478 0.00 0.00 35.25 4.02
4473 5298 2.104170 GTAGAGCAGGCCTAGAAGTGT 58.896 52.381 3.98 0.00 0.00 3.55
4474 5299 0.901124 AGAGCAGGCCTAGAAGTGTG 59.099 55.000 3.98 0.00 0.00 3.82
4475 5300 0.610687 GAGCAGGCCTAGAAGTGTGT 59.389 55.000 3.98 0.00 0.00 3.72
4476 5301 0.610687 AGCAGGCCTAGAAGTGTGTC 59.389 55.000 3.98 0.00 0.00 3.67
4477 5302 0.610687 GCAGGCCTAGAAGTGTGTCT 59.389 55.000 3.98 0.00 0.00 3.41
4478 5303 1.404851 GCAGGCCTAGAAGTGTGTCTC 60.405 57.143 3.98 0.00 0.00 3.36
4479 5304 2.175202 CAGGCCTAGAAGTGTGTCTCT 58.825 52.381 3.98 0.00 0.00 3.10
4480 5305 2.094286 CAGGCCTAGAAGTGTGTCTCTG 60.094 54.545 3.98 0.00 0.00 3.35
4501 5326 0.109723 GTGTAGGCAGTGGGTTTGGA 59.890 55.000 0.00 0.00 0.00 3.53
4505 5330 1.372501 AGGCAGTGGGTTTGGATAGT 58.627 50.000 0.00 0.00 0.00 2.12
4515 5340 4.339814 TGGGTTTGGATAGTGTGTGTTTTC 59.660 41.667 0.00 0.00 0.00 2.29
4516 5341 4.339814 GGGTTTGGATAGTGTGTGTTTTCA 59.660 41.667 0.00 0.00 0.00 2.69
4518 5343 5.920273 GGTTTGGATAGTGTGTGTTTTCATG 59.080 40.000 0.00 0.00 0.00 3.07
4570 5395 9.506018 TGTGATAATCAGGTTAATATGGACATG 57.494 33.333 0.00 0.00 0.00 3.21
4574 5399 7.572523 AATCAGGTTAATATGGACATGTGTG 57.427 36.000 1.15 0.00 0.00 3.82
4575 5400 6.061022 TCAGGTTAATATGGACATGTGTGT 57.939 37.500 1.15 0.00 42.49 3.72
4576 5401 7.189079 TCAGGTTAATATGGACATGTGTGTA 57.811 36.000 1.15 0.00 39.09 2.90
4592 5424 5.779922 TGTGTGTAGTAGTTTGGTGAGATC 58.220 41.667 0.00 0.00 0.00 2.75
4662 5586 5.939764 TGTACTTATCTCTGTTGCATCCT 57.060 39.130 0.00 0.00 0.00 3.24
4678 5602 4.412796 CATCCTATGCCTGAAACTCTGA 57.587 45.455 0.00 0.00 0.00 3.27
4753 5677 2.213499 GTGTCCATGATCCGATCCAAC 58.787 52.381 5.91 0.42 0.00 3.77
4799 5737 0.605589 GCAGTGGCGTCCCTACTTTT 60.606 55.000 0.00 0.00 0.00 2.27
4800 5738 1.338389 GCAGTGGCGTCCCTACTTTTA 60.338 52.381 0.00 0.00 0.00 1.52
4818 5761 9.741647 CTACTTTTACCCCGTACTAAGATTAAG 57.258 37.037 0.00 0.00 0.00 1.85
4830 5773 8.407064 CGTACTAAGATTAAGTGACAGGATTCT 58.593 37.037 0.00 0.00 0.00 2.40
4845 5788 5.487488 ACAGGATTCTCAGTAATTGGTACCA 59.513 40.000 11.60 11.60 32.58 3.25
4899 5864 2.067766 GATGATCCTCTTGCGCTGATC 58.932 52.381 9.73 12.33 35.33 2.92
4906 5871 1.226916 CTTGCGCTGATCGAGCTCT 60.227 57.895 12.85 0.00 46.64 4.09
4917 5882 2.505628 TCGAGCTCTTCATCATCAGC 57.494 50.000 12.85 0.00 0.00 4.26
4918 5883 1.753073 TCGAGCTCTTCATCATCAGCA 59.247 47.619 12.85 0.00 34.08 4.41
4919 5884 2.128821 CGAGCTCTTCATCATCAGCAG 58.871 52.381 12.85 0.00 34.08 4.24
4920 5885 1.868498 GAGCTCTTCATCATCAGCAGC 59.132 52.381 6.43 0.00 34.08 5.25
4975 5940 4.111016 TGCAGCCTCGTACGGTCG 62.111 66.667 16.52 4.12 0.00 4.79
4976 5941 3.807538 GCAGCCTCGTACGGTCGA 61.808 66.667 16.52 4.38 38.19 4.20
5004 5969 2.769095 GGAAGAGAAGTAGATGCTGGGT 59.231 50.000 0.00 0.00 0.00 4.51
5005 5970 3.431486 GGAAGAGAAGTAGATGCTGGGTG 60.431 52.174 0.00 0.00 0.00 4.61
5006 5971 2.826488 AGAGAAGTAGATGCTGGGTGT 58.174 47.619 0.00 0.00 0.00 4.16
5008 5973 2.497675 GAGAAGTAGATGCTGGGTGTGA 59.502 50.000 0.00 0.00 0.00 3.58
5010 5975 2.238084 AGTAGATGCTGGGTGTGAGA 57.762 50.000 0.00 0.00 0.00 3.27
5011 5976 1.827969 AGTAGATGCTGGGTGTGAGAC 59.172 52.381 0.00 0.00 0.00 3.36
5029 5994 4.708421 TGAGACTGTGAGTGATGATGATGA 59.292 41.667 0.00 0.00 0.00 2.92
5047 6012 1.848388 TGATGTCCTTGGCTCATCCAT 59.152 47.619 15.83 0.00 46.04 3.41
5049 6014 0.548031 TGTCCTTGGCTCATCCATCC 59.452 55.000 0.00 0.00 46.04 3.51
5059 6024 0.694105 TCATCCATCCATCCACGGGT 60.694 55.000 0.00 0.00 0.00 5.28
5092 6057 2.625375 GGATTAAATCCCGCGTCCC 58.375 57.895 4.92 0.00 43.88 4.46
5093 6058 1.226030 GGATTAAATCCCGCGTCCCG 61.226 60.000 4.92 0.00 43.88 5.14
5094 6059 0.531311 GATTAAATCCCGCGTCCCGT 60.531 55.000 4.92 0.00 34.38 5.28
5095 6060 0.107557 ATTAAATCCCGCGTCCCGTT 60.108 50.000 4.92 0.00 34.38 4.44
5096 6061 1.020333 TTAAATCCCGCGTCCCGTTG 61.020 55.000 4.92 0.00 34.38 4.10
5226 6410 3.768757 CAGGGATCTATCTCACCTCATCC 59.231 52.174 0.00 0.00 0.00 3.51
5260 6444 1.752683 AGGAGTGCGTACGATCTCTT 58.247 50.000 26.58 21.20 0.00 2.85
5267 6451 2.094700 TGCGTACGATCTCTTTCAAGCT 60.095 45.455 21.65 0.00 0.00 3.74
5268 6452 2.532317 GCGTACGATCTCTTTCAAGCTC 59.468 50.000 21.65 0.00 0.00 4.09
5269 6453 3.732471 GCGTACGATCTCTTTCAAGCTCT 60.732 47.826 21.65 0.00 0.00 4.09
5270 6454 4.032355 CGTACGATCTCTTTCAAGCTCTC 58.968 47.826 10.44 0.00 0.00 3.20
5271 6455 3.143807 ACGATCTCTTTCAAGCTCTCG 57.856 47.619 0.00 0.00 0.00 4.04
5272 6456 2.750166 ACGATCTCTTTCAAGCTCTCGA 59.250 45.455 0.00 0.00 0.00 4.04
5273 6457 3.181501 ACGATCTCTTTCAAGCTCTCGAG 60.182 47.826 5.93 5.93 0.00 4.04
5395 6579 2.018324 GCGCTGCATCATCGATCGA 61.018 57.895 21.86 21.86 0.00 3.59
5396 6580 1.349982 GCGCTGCATCATCGATCGAT 61.350 55.000 24.60 24.60 34.81 3.59
5397 6581 0.639250 CGCTGCATCATCGATCGATC 59.361 55.000 27.20 16.42 31.62 3.69
5407 6592 2.049985 GATCGATCGGCGGTGGAG 60.050 66.667 16.41 0.00 41.33 3.86
5438 6623 0.166597 TTGGTCGAGTACGTACGCAG 59.833 55.000 25.70 18.57 40.69 5.18
5505 6691 1.597797 AATCGAGGCCGGACGTACAA 61.598 55.000 5.05 0.00 36.24 2.41
5509 6695 1.287041 GAGGCCGGACGTACAACAAC 61.287 60.000 5.05 0.00 0.00 3.32
5511 6697 1.159098 GGCCGGACGTACAACAACAA 61.159 55.000 5.05 0.00 0.00 2.83
5512 6698 0.656785 GCCGGACGTACAACAACAAA 59.343 50.000 5.05 0.00 0.00 2.83
5513 6699 1.063764 GCCGGACGTACAACAACAAAA 59.936 47.619 5.05 0.00 0.00 2.44
5514 6700 2.287129 GCCGGACGTACAACAACAAAAT 60.287 45.455 5.05 0.00 0.00 1.82
5515 6701 3.547601 CCGGACGTACAACAACAAAATC 58.452 45.455 0.00 0.00 0.00 2.17
5516 6702 3.547601 CGGACGTACAACAACAAAATCC 58.452 45.455 0.00 0.00 0.00 3.01
5517 6703 3.547601 GGACGTACAACAACAAAATCCG 58.452 45.455 0.00 0.00 0.00 4.18
5518 6704 3.002553 GGACGTACAACAACAAAATCCGT 59.997 43.478 0.00 0.00 0.00 4.69
5519 6705 4.210955 GGACGTACAACAACAAAATCCGTA 59.789 41.667 0.00 0.00 0.00 4.02
5584 6770 6.431234 GGATATGTCCAATATGACCCTCAAAC 59.569 42.308 3.16 0.00 44.42 2.93
5585 6771 3.605634 TGTCCAATATGACCCTCAAACG 58.394 45.455 0.00 0.00 34.25 3.60
5586 6772 3.008594 TGTCCAATATGACCCTCAAACGT 59.991 43.478 0.00 0.00 34.25 3.99
5587 6773 3.621715 GTCCAATATGACCCTCAAACGTC 59.378 47.826 0.00 0.00 0.00 4.34
5588 6774 2.943033 CCAATATGACCCTCAAACGTCC 59.057 50.000 0.00 0.00 0.00 4.79
5589 6775 3.605634 CAATATGACCCTCAAACGTCCA 58.394 45.455 0.00 0.00 0.00 4.02
5590 6776 3.543680 ATATGACCCTCAAACGTCCAG 57.456 47.619 0.00 0.00 0.00 3.86
5591 6777 0.324943 ATGACCCTCAAACGTCCAGG 59.675 55.000 0.00 0.00 0.00 4.45
5592 6778 1.671379 GACCCTCAAACGTCCAGGC 60.671 63.158 0.00 0.00 0.00 4.85
5593 6779 2.391724 GACCCTCAAACGTCCAGGCA 62.392 60.000 0.00 0.00 0.00 4.75
5594 6780 1.672356 CCCTCAAACGTCCAGGCAG 60.672 63.158 0.00 0.00 0.00 4.85
5595 6781 1.371183 CCTCAAACGTCCAGGCAGA 59.629 57.895 0.00 0.00 0.00 4.26
5596 6782 0.036010 CCTCAAACGTCCAGGCAGAT 60.036 55.000 0.00 0.00 0.00 2.90
5597 6783 1.207089 CCTCAAACGTCCAGGCAGATA 59.793 52.381 0.00 0.00 0.00 1.98
5598 6784 2.271800 CTCAAACGTCCAGGCAGATAC 58.728 52.381 0.00 0.00 0.00 2.24
5599 6785 0.999406 CAAACGTCCAGGCAGATACG 59.001 55.000 0.00 0.00 40.99 3.06
5600 6786 4.013702 ACGTCCAGGCAGATACGT 57.986 55.556 0.00 0.00 43.20 3.57
5601 6787 0.172803 AACGTCCAGGCAGATACGTC 59.827 55.000 3.89 0.00 46.89 4.34
5602 6788 0.680280 ACGTCCAGGCAGATACGTCT 60.680 55.000 0.00 0.00 44.60 4.18
5603 6789 0.029567 CGTCCAGGCAGATACGTCTC 59.970 60.000 0.00 0.00 30.42 3.36
5604 6790 1.103803 GTCCAGGCAGATACGTCTCA 58.896 55.000 3.60 0.00 30.42 3.27
5605 6791 1.476891 GTCCAGGCAGATACGTCTCAA 59.523 52.381 3.60 0.00 30.42 3.02
5606 6792 2.094182 GTCCAGGCAGATACGTCTCAAA 60.094 50.000 3.60 0.00 30.42 2.69
5607 6793 2.766263 TCCAGGCAGATACGTCTCAAAT 59.234 45.455 3.60 0.00 30.42 2.32
5608 6794 3.197766 TCCAGGCAGATACGTCTCAAATT 59.802 43.478 3.60 0.00 30.42 1.82
5609 6795 3.941483 CCAGGCAGATACGTCTCAAATTT 59.059 43.478 3.60 0.00 30.42 1.82
5610 6796 4.034510 CCAGGCAGATACGTCTCAAATTTC 59.965 45.833 3.60 0.00 30.42 2.17
5611 6797 4.631377 CAGGCAGATACGTCTCAAATTTCA 59.369 41.667 3.60 0.00 30.42 2.69
5612 6798 4.631813 AGGCAGATACGTCTCAAATTTCAC 59.368 41.667 3.60 0.00 30.42 3.18
5613 6799 4.492570 GGCAGATACGTCTCAAATTTCACG 60.493 45.833 3.60 10.75 38.24 4.35
5614 6800 4.326278 GCAGATACGTCTCAAATTTCACGA 59.674 41.667 16.74 0.00 36.14 4.35
5615 6801 5.499334 GCAGATACGTCTCAAATTTCACGAG 60.499 44.000 16.74 8.68 36.14 4.18
5616 6802 5.573282 CAGATACGTCTCAAATTTCACGAGT 59.427 40.000 16.74 5.85 36.14 4.18
5617 6803 6.089551 CAGATACGTCTCAAATTTCACGAGTT 59.910 38.462 16.74 5.01 36.14 3.01
5618 6804 4.452890 ACGTCTCAAATTTCACGAGTTG 57.547 40.909 16.74 8.07 36.14 3.16
5619 6805 3.218398 CGTCTCAAATTTCACGAGTTGC 58.782 45.455 7.71 0.00 34.06 4.17
5620 6806 3.303066 CGTCTCAAATTTCACGAGTTGCA 60.303 43.478 7.71 0.00 34.06 4.08
5621 6807 4.611355 CGTCTCAAATTTCACGAGTTGCAT 60.611 41.667 7.71 0.00 34.06 3.96
5622 6808 4.848299 GTCTCAAATTTCACGAGTTGCATC 59.152 41.667 0.00 0.00 0.00 3.91
5623 6809 4.083324 TCTCAAATTTCACGAGTTGCATCC 60.083 41.667 0.00 0.00 0.00 3.51
5624 6810 2.900122 AATTTCACGAGTTGCATCCG 57.100 45.000 0.00 0.00 0.00 4.18
5625 6811 1.086696 ATTTCACGAGTTGCATCCGG 58.913 50.000 0.00 0.00 0.00 5.14
5626 6812 0.034198 TTTCACGAGTTGCATCCGGA 59.966 50.000 6.61 6.61 0.00 5.14
5627 6813 0.669318 TTCACGAGTTGCATCCGGAC 60.669 55.000 6.12 0.00 0.00 4.79
5628 6814 1.374125 CACGAGTTGCATCCGGACA 60.374 57.895 6.12 0.00 0.00 4.02
5629 6815 0.740868 CACGAGTTGCATCCGGACAT 60.741 55.000 6.12 0.00 0.00 3.06
5630 6816 0.460284 ACGAGTTGCATCCGGACATC 60.460 55.000 6.12 0.00 0.00 3.06
5631 6817 0.179100 CGAGTTGCATCCGGACATCT 60.179 55.000 6.12 5.75 0.00 2.90
5632 6818 1.740380 CGAGTTGCATCCGGACATCTT 60.740 52.381 6.12 0.00 0.00 2.40
5633 6819 2.481276 CGAGTTGCATCCGGACATCTTA 60.481 50.000 6.12 0.00 0.00 2.10
5634 6820 3.733337 GAGTTGCATCCGGACATCTTAT 58.267 45.455 6.12 0.00 0.00 1.73
5635 6821 4.558697 CGAGTTGCATCCGGACATCTTATA 60.559 45.833 6.12 0.00 0.00 0.98
5636 6822 4.632153 AGTTGCATCCGGACATCTTATAC 58.368 43.478 6.12 0.00 0.00 1.47
5637 6823 4.345257 AGTTGCATCCGGACATCTTATACT 59.655 41.667 6.12 0.00 0.00 2.12
5638 6824 5.538813 AGTTGCATCCGGACATCTTATACTA 59.461 40.000 6.12 0.00 0.00 1.82
5639 6825 5.644977 TGCATCCGGACATCTTATACTAG 57.355 43.478 6.12 0.00 0.00 2.57
5640 6826 5.077564 TGCATCCGGACATCTTATACTAGT 58.922 41.667 6.12 0.00 0.00 2.57
5641 6827 6.243148 TGCATCCGGACATCTTATACTAGTA 58.757 40.000 6.12 4.77 0.00 1.82
5642 6828 6.374613 TGCATCCGGACATCTTATACTAGTAG 59.625 42.308 6.12 0.00 0.00 2.57
5643 6829 6.598457 GCATCCGGACATCTTATACTAGTAGA 59.402 42.308 6.12 0.12 0.00 2.59
5644 6830 7.283580 GCATCCGGACATCTTATACTAGTAGAT 59.716 40.741 6.12 4.84 0.00 1.98
5645 6831 9.179909 CATCCGGACATCTTATACTAGTAGATT 57.820 37.037 6.12 0.00 0.00 2.40
5646 6832 8.789825 TCCGGACATCTTATACTAGTAGATTC 57.210 38.462 0.00 7.82 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.827898 GCTCCCCTCGGTCAGACG 61.828 72.222 0.00 0.00 0.00 4.18
3 4 2.005960 CTAACGCTCCCCTCGGTCAG 62.006 65.000 0.00 0.00 0.00 3.51
4 5 2.036098 TAACGCTCCCCTCGGTCA 59.964 61.111 0.00 0.00 0.00 4.02
5 6 2.783288 CCTAACGCTCCCCTCGGTC 61.783 68.421 0.00 0.00 0.00 4.79
6 7 2.758737 CCTAACGCTCCCCTCGGT 60.759 66.667 0.00 0.00 0.00 4.69
41 180 2.054453 GGCGTCGGTTACCTACCCT 61.054 63.158 0.00 0.00 44.70 4.34
42 181 1.887344 TTGGCGTCGGTTACCTACCC 61.887 60.000 0.00 3.50 44.70 3.69
45 185 0.038343 GTGTTGGCGTCGGTTACCTA 60.038 55.000 0.00 0.00 0.00 3.08
83 500 1.235948 ACGAAGCTTCCTCGTCGTCT 61.236 55.000 20.62 0.00 45.19 4.18
86 503 4.059136 GACGAAGCTTCCTCGTCG 57.941 61.111 20.16 11.92 44.87 5.12
88 505 2.567049 CCGACGAAGCTTCCTCGT 59.433 61.111 31.82 23.94 43.13 4.18
90 507 0.458716 CTTCCCGACGAAGCTTCCTC 60.459 60.000 20.62 16.76 41.61 3.71
115 541 3.364441 GATGTTGTGCTGGCGCCA 61.364 61.111 30.59 30.59 34.43 5.69
117 543 1.226491 GATGATGTTGTGCTGGCGC 60.226 57.895 0.00 0.00 0.00 6.53
133 559 1.449353 GAAGCATCCTCGGCCAGAT 59.551 57.895 2.24 0.00 0.00 2.90
135 561 2.587194 CGAAGCATCCTCGGCCAG 60.587 66.667 2.24 0.00 0.00 4.85
146 591 1.787012 GTTACTTTCCCGACGAAGCA 58.213 50.000 0.00 0.00 0.00 3.91
166 611 2.870372 GATGTTGTGCTGGCGGTC 59.130 61.111 0.00 0.00 0.00 4.79
167 612 3.049674 CGATGTTGTGCTGGCGGT 61.050 61.111 0.00 0.00 0.00 5.68
168 613 3.027170 GACGATGTTGTGCTGGCGG 62.027 63.158 0.00 0.00 0.00 6.13
196 781 4.038763 TGCTTCCTCGGTGTATATAGGTTG 59.961 45.833 0.00 0.00 0.00 3.77
197 782 4.220724 TGCTTCCTCGGTGTATATAGGTT 58.779 43.478 0.00 0.00 0.00 3.50
199 784 4.438880 CGATGCTTCCTCGGTGTATATAGG 60.439 50.000 0.00 0.00 32.58 2.57
201 786 4.696899 CGATGCTTCCTCGGTGTATATA 57.303 45.455 0.00 0.00 32.58 0.86
219 804 1.550130 TTCTTCCCCTTCACGCCGAT 61.550 55.000 0.00 0.00 0.00 4.18
246 831 0.532573 CCCACTAGCGCTCTTCTTGA 59.467 55.000 16.34 0.00 0.00 3.02
247 832 0.460987 CCCCACTAGCGCTCTTCTTG 60.461 60.000 16.34 4.83 0.00 3.02
277 862 1.221466 CTCGTGCGTGAACCATGTGT 61.221 55.000 0.00 0.00 0.00 3.72
300 885 1.709147 GATGTGGCACTCATGTCGGC 61.709 60.000 19.83 0.00 43.02 5.54
306 891 2.124570 GGGCGATGTGGCACTCAT 60.125 61.111 19.83 4.56 45.84 2.90
337 922 8.434589 AGGATGGAAAAACAATTTAGGAATGA 57.565 30.769 0.00 0.00 0.00 2.57
389 975 1.452145 GAACTTTTCGCCACAGCCCA 61.452 55.000 0.00 0.00 34.57 5.36
392 978 4.515107 CGAACTTTTCGCCACAGC 57.485 55.556 0.00 0.00 46.97 4.40
408 995 6.869913 TGGACAGTACAAAAGGTATAAACTCG 59.130 38.462 0.00 0.00 33.76 4.18
412 999 8.212312 TCTTGTGGACAGTACAAAAGGTATAAA 58.788 33.333 14.95 0.00 37.56 1.40
419 1006 6.436843 ACTTTCTTGTGGACAGTACAAAAG 57.563 37.500 9.32 9.32 37.56 2.27
454 1043 9.299963 CTTGTTATGTGAACATTTCAAGTTTCA 57.700 29.630 20.07 0.00 42.15 2.69
519 1108 2.093128 CCTAGCCAAACCATAGTTCGGT 60.093 50.000 0.00 0.00 32.16 4.69
523 1112 2.846827 AGAGCCTAGCCAAACCATAGTT 59.153 45.455 0.00 0.00 38.03 2.24
548 1138 7.596248 CGTTCCAAAAGTTTCATGATTTCATCT 59.404 33.333 0.00 0.00 33.61 2.90
549 1139 7.594758 TCGTTCCAAAAGTTTCATGATTTCATC 59.405 33.333 0.00 0.00 33.61 2.92
550 1140 7.432869 TCGTTCCAAAAGTTTCATGATTTCAT 58.567 30.769 0.00 0.00 36.96 2.57
551 1141 6.800543 TCGTTCCAAAAGTTTCATGATTTCA 58.199 32.000 0.00 0.00 0.00 2.69
552 1142 7.692908 TTCGTTCCAAAAGTTTCATGATTTC 57.307 32.000 0.00 0.00 0.00 2.17
553 1143 8.661352 ATTTCGTTCCAAAAGTTTCATGATTT 57.339 26.923 0.00 0.00 0.00 2.17
561 1185 6.159988 TGTCACAATTTCGTTCCAAAAGTTT 58.840 32.000 0.00 0.00 0.00 2.66
578 1202 8.349245 CCAGTACTCAATGTTTAAATGTCACAA 58.651 33.333 0.00 0.00 0.00 3.33
582 1206 8.999431 TCTTCCAGTACTCAATGTTTAAATGTC 58.001 33.333 0.00 0.00 0.00 3.06
593 1217 7.552687 TGCGAATAAATTCTTCCAGTACTCAAT 59.447 33.333 0.00 0.00 34.69 2.57
594 1218 6.876789 TGCGAATAAATTCTTCCAGTACTCAA 59.123 34.615 0.00 0.00 34.69 3.02
616 1240 1.255767 CGGCGACCTTTTTATTTGCG 58.744 50.000 0.00 0.00 0.00 4.85
618 1242 2.226912 TCACCGGCGACCTTTTTATTTG 59.773 45.455 9.30 0.00 0.00 2.32
622 1246 0.680618 TCTCACCGGCGACCTTTTTA 59.319 50.000 9.30 0.00 0.00 1.52
623 1247 0.179040 TTCTCACCGGCGACCTTTTT 60.179 50.000 9.30 0.00 0.00 1.94
627 1251 2.579201 CATTCTCACCGGCGACCT 59.421 61.111 9.30 0.00 0.00 3.85
629 1253 2.511600 CCCATTCTCACCGGCGAC 60.512 66.667 9.30 0.00 0.00 5.19
630 1254 4.467084 GCCCATTCTCACCGGCGA 62.467 66.667 9.30 0.00 0.00 5.54
631 1255 4.776322 TGCCCATTCTCACCGGCG 62.776 66.667 0.00 0.00 44.71 6.46
632 1256 1.531739 TTTTGCCCATTCTCACCGGC 61.532 55.000 0.00 0.00 41.99 6.13
633 1257 0.243636 GTTTTGCCCATTCTCACCGG 59.756 55.000 0.00 0.00 0.00 5.28
635 1259 1.335872 CGTGTTTTGCCCATTCTCACC 60.336 52.381 0.00 0.00 0.00 4.02
636 1260 1.335872 CCGTGTTTTGCCCATTCTCAC 60.336 52.381 0.00 0.00 0.00 3.51
637 1261 0.958091 CCGTGTTTTGCCCATTCTCA 59.042 50.000 0.00 0.00 0.00 3.27
638 1262 0.243636 CCCGTGTTTTGCCCATTCTC 59.756 55.000 0.00 0.00 0.00 2.87
639 1263 0.178975 TCCCGTGTTTTGCCCATTCT 60.179 50.000 0.00 0.00 0.00 2.40
640 1264 0.243636 CTCCCGTGTTTTGCCCATTC 59.756 55.000 0.00 0.00 0.00 2.67
641 1265 1.815817 GCTCCCGTGTTTTGCCCATT 61.816 55.000 0.00 0.00 0.00 3.16
642 1266 2.275380 GCTCCCGTGTTTTGCCCAT 61.275 57.895 0.00 0.00 0.00 4.00
643 1267 2.909965 GCTCCCGTGTTTTGCCCA 60.910 61.111 0.00 0.00 0.00 5.36
644 1268 2.909965 TGCTCCCGTGTTTTGCCC 60.910 61.111 0.00 0.00 0.00 5.36
645 1269 2.644992 CTGCTCCCGTGTTTTGCC 59.355 61.111 0.00 0.00 0.00 4.52
646 1270 2.644992 CCTGCTCCCGTGTTTTGC 59.355 61.111 0.00 0.00 0.00 3.68
647 1271 2.644992 GCCTGCTCCCGTGTTTTG 59.355 61.111 0.00 0.00 0.00 2.44
648 1272 2.978010 CGCCTGCTCCCGTGTTTT 60.978 61.111 0.00 0.00 0.00 2.43
731 1355 2.049802 ACGTTGTACTCCGTGGCG 60.050 61.111 9.13 0.00 35.69 5.69
776 1402 3.798511 GAAGGGAAGGGGGCGAGG 61.799 72.222 0.00 0.00 0.00 4.63
777 1403 3.798511 GGAAGGGAAGGGGGCGAG 61.799 72.222 0.00 0.00 0.00 5.03
778 1404 3.883822 AAGGAAGGGAAGGGGGCGA 62.884 63.158 0.00 0.00 0.00 5.54
779 1405 3.339093 AAGGAAGGGAAGGGGGCG 61.339 66.667 0.00 0.00 0.00 6.13
780 1406 2.684104 GAAGGAAGGGAAGGGGGC 59.316 66.667 0.00 0.00 0.00 5.80
781 1407 2.680370 CGGAAGGAAGGGAAGGGGG 61.680 68.421 0.00 0.00 0.00 5.40
782 1408 2.998949 CGGAAGGAAGGGAAGGGG 59.001 66.667 0.00 0.00 0.00 4.79
783 1409 2.272471 GCGGAAGGAAGGGAAGGG 59.728 66.667 0.00 0.00 0.00 3.95
784 1410 2.272471 GGCGGAAGGAAGGGAAGG 59.728 66.667 0.00 0.00 0.00 3.46
785 1411 1.377333 GTGGCGGAAGGAAGGGAAG 60.377 63.158 0.00 0.00 0.00 3.46
786 1412 1.710996 TTGTGGCGGAAGGAAGGGAA 61.711 55.000 0.00 0.00 0.00 3.97
787 1413 2.124507 CTTGTGGCGGAAGGAAGGGA 62.125 60.000 0.00 0.00 0.00 4.20
871 1497 7.652105 TCAGTGGCGAGTACTGATTAATTAATC 59.348 37.037 25.14 25.14 46.92 1.75
874 1500 6.459670 TCAGTGGCGAGTACTGATTAATTA 57.540 37.500 0.00 0.00 46.92 1.40
914 1540 8.971032 TTATCCTATGATTAATTGGGCCATTT 57.029 30.769 17.02 17.02 32.49 2.32
918 1544 8.773033 ATGATTATCCTATGATTAATTGGGCC 57.227 34.615 0.00 0.00 32.49 5.80
928 1554 8.586879 TGAGAAGACGATGATTATCCTATGAT 57.413 34.615 0.00 0.00 34.87 2.45
995 1621 1.754234 CGCCTTTATTGCTGCCCCT 60.754 57.895 0.00 0.00 0.00 4.79
996 1622 2.807622 CGCCTTTATTGCTGCCCC 59.192 61.111 0.00 0.00 0.00 5.80
998 1624 0.803380 CTTGCGCCTTTATTGCTGCC 60.803 55.000 4.18 0.00 0.00 4.85
1034 1677 1.510431 AAAGGGAAGGAGGGAAGGGC 61.510 60.000 0.00 0.00 0.00 5.19
1036 1679 0.332972 CCAAAGGGAAGGAGGGAAGG 59.667 60.000 0.00 0.00 35.59 3.46
1037 1680 3.987594 CCAAAGGGAAGGAGGGAAG 57.012 57.895 0.00 0.00 35.59 3.46
1060 1713 1.319614 GCTCCCTCGTGCTTCTCTCT 61.320 60.000 0.00 0.00 0.00 3.10
1129 1788 3.947132 CTGGAGAGTGGGCGCAGTG 62.947 68.421 16.83 0.00 0.00 3.66
1130 1789 3.699894 CTGGAGAGTGGGCGCAGT 61.700 66.667 11.42 11.42 0.00 4.40
1131 1790 3.655810 GACTGGAGAGTGGGCGCAG 62.656 68.421 10.83 0.00 30.16 5.18
1150 1809 1.685820 GGTGGAGGAAGGAACTGGG 59.314 63.158 0.00 0.00 40.86 4.45
1280 1976 4.520846 CAATGCCGCCGTCGAAGC 62.521 66.667 0.00 0.00 38.10 3.86
1323 2019 2.123640 GGACGGAGGAGGAGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
1324 2020 2.517402 CGGACGGAGGAGGAGGAG 60.517 72.222 0.00 0.00 0.00 3.69
1325 2021 4.124943 CCGGACGGAGGAGGAGGA 62.125 72.222 4.40 0.00 37.50 3.71
1356 2052 2.744709 CGCCTTACGGTGGTTGGG 60.745 66.667 0.00 0.00 37.15 4.12
1415 2120 0.110373 AAGAAACAAATCGCGCGACC 60.110 50.000 37.37 17.03 0.00 4.79
1439 2147 1.123928 AGAGGACAGGATTAAGGCCG 58.876 55.000 0.00 0.00 0.00 6.13
1458 2166 0.960364 GGGCGGCTCAATCAGTCAAA 60.960 55.000 9.56 0.00 0.00 2.69
1460 2168 0.975556 TAGGGCGGCTCAATCAGTCA 60.976 55.000 9.56 0.00 0.00 3.41
1462 2170 0.839946 ATTAGGGCGGCTCAATCAGT 59.160 50.000 9.56 0.00 0.00 3.41
1538 2249 1.109609 GGCGGTACTAGCTGGTAACT 58.890 55.000 21.33 0.00 37.61 2.24
1540 2251 0.032813 AGGGCGGTACTAGCTGGTAA 60.033 55.000 11.97 0.00 34.52 2.85
1545 2256 0.540454 GGAAAAGGGCGGTACTAGCT 59.460 55.000 12.21 0.00 34.52 3.32
1611 2330 2.163509 GGAAGTCTTTTCCCCTGCTTC 58.836 52.381 0.00 0.00 32.48 3.86
1612 2331 1.499007 TGGAAGTCTTTTCCCCTGCTT 59.501 47.619 3.66 0.00 37.79 3.91
1613 2332 1.149101 TGGAAGTCTTTTCCCCTGCT 58.851 50.000 3.66 0.00 37.79 4.24
1614 2333 1.995376 TTGGAAGTCTTTTCCCCTGC 58.005 50.000 3.66 0.00 37.79 4.85
1615 2334 4.219288 CAGAATTGGAAGTCTTTTCCCCTG 59.781 45.833 3.66 3.06 37.79 4.45
1616 2335 4.411013 CAGAATTGGAAGTCTTTTCCCCT 58.589 43.478 3.66 0.00 37.79 4.79
1617 2336 4.790765 CAGAATTGGAAGTCTTTTCCCC 57.209 45.455 3.66 0.00 37.79 4.81
1741 2461 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1742 2462 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1743 2463 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1744 2464 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1745 2465 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1746 2466 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
1747 2467 1.400888 CCAACACACACACACACACAC 60.401 52.381 0.00 0.00 0.00 3.82
1748 2468 0.877743 CCAACACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
1749 2469 0.170116 CCCAACACACACACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
1750 2470 0.962855 CCCCAACACACACACACACA 60.963 55.000 0.00 0.00 0.00 3.72
1751 2471 0.963355 ACCCCAACACACACACACAC 60.963 55.000 0.00 0.00 0.00 3.82
1752 2472 0.251386 AACCCCAACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
1753 2473 0.172352 CAACCCCAACACACACACAC 59.828 55.000 0.00 0.00 0.00 3.82
1754 2474 0.251386 ACAACCCCAACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
1755 2475 0.454196 GACAACCCCAACACACACAC 59.546 55.000 0.00 0.00 0.00 3.82
1756 2476 0.329931 AGACAACCCCAACACACACA 59.670 50.000 0.00 0.00 0.00 3.72
1757 2477 1.470051 AAGACAACCCCAACACACAC 58.530 50.000 0.00 0.00 0.00 3.82
1758 2478 2.223803 AAAGACAACCCCAACACACA 57.776 45.000 0.00 0.00 0.00 3.72
1759 2479 2.887337 CAAAAGACAACCCCAACACAC 58.113 47.619 0.00 0.00 0.00 3.82
1760 2480 1.205893 GCAAAAGACAACCCCAACACA 59.794 47.619 0.00 0.00 0.00 3.72
1768 2488 4.116961 GGGTTTAACAGCAAAAGACAACC 58.883 43.478 0.00 0.00 33.09 3.77
1769 2489 5.006153 AGGGTTTAACAGCAAAAGACAAC 57.994 39.130 0.00 0.00 0.00 3.32
1812 2532 1.186200 GGCAGGGGAAATTGAAGGAC 58.814 55.000 0.00 0.00 0.00 3.85
1819 2539 2.110721 AGAAACAGAGGCAGGGGAAATT 59.889 45.455 0.00 0.00 0.00 1.82
1825 2545 0.600057 GCAAAGAAACAGAGGCAGGG 59.400 55.000 0.00 0.00 0.00 4.45
1888 2608 6.045577 AGGAAACCTTTGAGGATTAGGAAAGA 59.954 38.462 0.07 0.00 37.67 2.52
1915 2637 4.851558 GCAATGGTAACTCGCAGTAAAAAG 59.148 41.667 0.00 0.00 37.61 2.27
2080 2819 7.387673 CAGGAAAATGTAAAAATCCCCAAGTTC 59.612 37.037 0.00 0.00 0.00 3.01
2120 2859 5.409520 TGCAGAGTGTACATCTTGAACATTC 59.590 40.000 0.00 0.00 31.97 2.67
2136 2910 4.795970 AAAACGAGTAAACTGCAGAGTG 57.204 40.909 23.35 5.08 30.61 3.51
2166 2941 8.301730 TCAGATTTCAACAATTGCTGAAAATC 57.698 30.769 30.37 25.87 41.57 2.17
2230 3005 1.065636 CAGTCCCACATCTCACTGCAT 60.066 52.381 0.00 0.00 30.43 3.96
2306 3081 4.148128 AGGACAGTAGGAATGATGCAAG 57.852 45.455 0.00 0.00 0.00 4.01
2358 3133 4.264253 TGGAACTGCGAAATCAGATGAAT 58.736 39.130 0.00 0.00 37.51 2.57
2362 3137 4.148128 AGATGGAACTGCGAAATCAGAT 57.852 40.909 0.00 0.00 37.51 2.90
2412 3187 2.087646 GGCTCCAAGAATCAACCTCAC 58.912 52.381 0.00 0.00 0.00 3.51
2508 3283 9.723601 AACAATGGCATGTAAATAAAAGAACAT 57.276 25.926 0.00 0.00 32.02 2.71
2511 3287 9.646427 GGTAACAATGGCATGTAAATAAAAGAA 57.354 29.630 0.00 0.00 32.02 2.52
2517 3293 7.342581 TCAGAGGTAACAATGGCATGTAAATA 58.657 34.615 0.00 0.00 41.41 1.40
2526 3302 3.878778 AGTGATCAGAGGTAACAATGGC 58.121 45.455 0.00 0.00 41.41 4.40
2543 3319 8.186163 CGGTATGTTAGTTCAGTATGTTAGTGA 58.814 37.037 0.00 0.00 37.40 3.41
2557 3333 4.774200 AGAGGTAACCACGGTATGTTAGTT 59.226 41.667 3.49 0.00 37.17 2.24
2567 3343 0.175073 GTGGCTAGAGGTAACCACGG 59.825 60.000 0.00 0.00 42.84 4.94
2581 3357 1.472188 GAGGGAGTACGTTAGTGGCT 58.528 55.000 0.00 0.00 0.00 4.75
2591 3367 0.396695 TGATGGGACGGAGGGAGTAC 60.397 60.000 0.00 0.00 0.00 2.73
2596 3372 3.441101 TCTTATATGATGGGACGGAGGG 58.559 50.000 0.00 0.00 0.00 4.30
2597 3373 4.283467 TGTTCTTATATGATGGGACGGAGG 59.717 45.833 0.00 0.00 0.00 4.30
2598 3374 5.468540 TGTTCTTATATGATGGGACGGAG 57.531 43.478 0.00 0.00 0.00 4.63
2599 3375 6.433847 AATGTTCTTATATGATGGGACGGA 57.566 37.500 0.00 0.00 0.00 4.69
2600 3376 7.510549 AAAATGTTCTTATATGATGGGACGG 57.489 36.000 0.00 0.00 0.00 4.79
2601 3377 8.620416 TCAAAAATGTTCTTATATGATGGGACG 58.380 33.333 0.00 0.00 0.00 4.79
2602 3378 9.736023 GTCAAAAATGTTCTTATATGATGGGAC 57.264 33.333 0.00 0.00 0.00 4.46
2603 3379 9.473007 TGTCAAAAATGTTCTTATATGATGGGA 57.527 29.630 0.00 0.00 0.00 4.37
2604 3380 9.520204 GTGTCAAAAATGTTCTTATATGATGGG 57.480 33.333 0.00 0.00 0.00 4.00
2612 3388 8.934023 TTCCCTAGTGTCAAAAATGTTCTTAT 57.066 30.769 0.00 0.00 0.00 1.73
2613 3389 7.040686 GCTTCCCTAGTGTCAAAAATGTTCTTA 60.041 37.037 0.00 0.00 0.00 2.10
2614 3390 6.239036 GCTTCCCTAGTGTCAAAAATGTTCTT 60.239 38.462 0.00 0.00 0.00 2.52
2615 3391 5.241728 GCTTCCCTAGTGTCAAAAATGTTCT 59.758 40.000 0.00 0.00 0.00 3.01
2616 3392 5.009610 TGCTTCCCTAGTGTCAAAAATGTTC 59.990 40.000 0.00 0.00 0.00 3.18
2617 3393 4.892934 TGCTTCCCTAGTGTCAAAAATGTT 59.107 37.500 0.00 0.00 0.00 2.71
2618 3394 4.469657 TGCTTCCCTAGTGTCAAAAATGT 58.530 39.130 0.00 0.00 0.00 2.71
2619 3395 5.047802 ACATGCTTCCCTAGTGTCAAAAATG 60.048 40.000 0.00 0.00 0.00 2.32
2620 3396 5.079643 ACATGCTTCCCTAGTGTCAAAAAT 58.920 37.500 0.00 0.00 0.00 1.82
2621 3397 4.469657 ACATGCTTCCCTAGTGTCAAAAA 58.530 39.130 0.00 0.00 0.00 1.94
2622 3398 4.072131 GACATGCTTCCCTAGTGTCAAAA 58.928 43.478 0.00 0.00 39.10 2.44
2623 3399 3.327757 AGACATGCTTCCCTAGTGTCAAA 59.672 43.478 9.32 0.00 41.12 2.69
2624 3400 2.906389 AGACATGCTTCCCTAGTGTCAA 59.094 45.455 9.32 0.00 41.12 3.18
2625 3401 2.540383 AGACATGCTTCCCTAGTGTCA 58.460 47.619 9.32 0.00 41.12 3.58
2626 3402 4.688021 CTTAGACATGCTTCCCTAGTGTC 58.312 47.826 0.00 0.00 39.47 3.67
2627 3403 3.118592 GCTTAGACATGCTTCCCTAGTGT 60.119 47.826 0.00 0.00 0.00 3.55
2628 3404 3.118629 TGCTTAGACATGCTTCCCTAGTG 60.119 47.826 0.00 0.00 0.00 2.74
2629 3405 3.107601 TGCTTAGACATGCTTCCCTAGT 58.892 45.455 0.00 0.00 0.00 2.57
2630 3406 3.827008 TGCTTAGACATGCTTCCCTAG 57.173 47.619 0.00 0.00 0.00 3.02
2631 3407 3.969976 AGATGCTTAGACATGCTTCCCTA 59.030 43.478 0.00 0.00 35.00 3.53
2632 3408 2.776536 AGATGCTTAGACATGCTTCCCT 59.223 45.455 0.00 0.00 35.00 4.20
2633 3409 3.205784 AGATGCTTAGACATGCTTCCC 57.794 47.619 0.00 0.00 35.00 3.97
2634 3410 4.749099 CACTAGATGCTTAGACATGCTTCC 59.251 45.833 0.00 0.00 35.00 3.46
2639 3415 6.336566 ACTTCACACTAGATGCTTAGACATG 58.663 40.000 0.00 0.00 0.00 3.21
2693 3469 3.925913 TCAAACAAAAACAGCAGCTCAAC 59.074 39.130 0.00 0.00 0.00 3.18
2700 3476 6.791887 TGAACATTTCAAACAAAAACAGCA 57.208 29.167 0.00 0.00 36.59 4.41
2734 3510 0.807667 CGTAGATGGCACTGGCACTC 60.808 60.000 7.57 7.10 41.84 3.51
2742 3518 7.866393 AGTTATAATCAACTACGTAGATGGCAC 59.134 37.037 28.74 15.74 36.99 5.01
2743 3519 7.948357 AGTTATAATCAACTACGTAGATGGCA 58.052 34.615 28.74 12.54 36.99 4.92
2744 3520 8.813643 AAGTTATAATCAACTACGTAGATGGC 57.186 34.615 28.74 11.37 37.78 4.40
2745 3521 9.408069 GGAAGTTATAATCAACTACGTAGATGG 57.592 37.037 28.74 16.22 37.78 3.51
2856 3633 7.429340 CAAAACAAGTTTCACTACTGCTAACAG 59.571 37.037 0.00 0.00 39.75 3.16
2867 3644 4.519540 ACTGCACAAAACAAGTTTCACT 57.480 36.364 0.00 0.00 31.45 3.41
2924 3703 5.468072 AGTTCAGTTGCATTCTAGACAGTTG 59.532 40.000 0.00 0.00 0.00 3.16
2950 3733 7.429636 TGACTTCTGGTTAAAGGTTAAATCG 57.570 36.000 0.00 0.00 0.00 3.34
3004 3787 2.978156 ATTTGTTCTGGCAAGAGGGA 57.022 45.000 0.00 0.00 32.79 4.20
3011 3794 6.151648 CCTTTCATCTCTTATTTGTTCTGGCA 59.848 38.462 0.00 0.00 0.00 4.92
3064 3859 6.017605 CACTAAACTTGAAGTGCATTCTCAGT 60.018 38.462 0.00 0.00 38.83 3.41
3299 4094 7.144722 ACATACAAACCAGTACACATTGATG 57.855 36.000 0.00 4.36 0.00 3.07
3306 4101 6.636705 TCCATCTACATACAAACCAGTACAC 58.363 40.000 0.00 0.00 0.00 2.90
3331 4126 2.549992 CCCATCCGTCAGAGAACAACAA 60.550 50.000 0.00 0.00 0.00 2.83
3332 4127 1.001974 CCCATCCGTCAGAGAACAACA 59.998 52.381 0.00 0.00 0.00 3.33
3333 4128 1.726853 CCCATCCGTCAGAGAACAAC 58.273 55.000 0.00 0.00 0.00 3.32
3334 4129 0.036388 GCCCATCCGTCAGAGAACAA 60.036 55.000 0.00 0.00 0.00 2.83
3346 4141 2.692041 CAGATTTTCCAAGAGCCCATCC 59.308 50.000 0.00 0.00 0.00 3.51
3508 4303 3.091545 CAACCAGCCATTGTTCAGGTAT 58.908 45.455 0.00 0.00 0.00 2.73
3561 4356 4.499037 AAAAACATACACTTCTTCCGGC 57.501 40.909 0.00 0.00 0.00 6.13
3610 4408 4.697514 TGGCAGCTATCAGAAATACTGTC 58.302 43.478 0.00 0.00 45.86 3.51
3623 4421 5.822132 AATACTTGAGAGATGGCAGCTAT 57.178 39.130 4.69 0.69 0.00 2.97
3626 4424 4.450053 AGAAATACTTGAGAGATGGCAGC 58.550 43.478 0.00 0.00 0.00 5.25
3647 4445 5.706916 CCAGAAATCATGGTGAGAAACAAG 58.293 41.667 0.00 0.00 32.85 3.16
3658 4456 5.887598 TGTCAATAAGGACCAGAAATCATGG 59.112 40.000 0.00 0.00 43.87 3.66
3663 4461 5.779241 TCCTGTCAATAAGGACCAGAAAT 57.221 39.130 0.00 0.00 38.96 2.17
3670 4468 3.444034 GGGCTTTTCCTGTCAATAAGGAC 59.556 47.826 0.00 0.00 43.62 3.85
3676 4474 3.690460 CACTAGGGCTTTTCCTGTCAAT 58.310 45.455 0.00 0.00 37.75 2.57
3690 4488 0.392193 CTTCCACAGCAGCACTAGGG 60.392 60.000 0.00 0.00 0.00 3.53
3710 4508 9.877178 GACCATTATACTAACCAGAGATATTGG 57.123 37.037 0.00 0.00 41.60 3.16
3711 4509 9.877178 GGACCATTATACTAACCAGAGATATTG 57.123 37.037 0.00 0.00 0.00 1.90
3761 4559 6.881065 AGCATCAGTAGCTTTACAATTGAGAA 59.119 34.615 13.59 2.88 39.87 2.87
3764 4562 7.555965 TCTAGCATCAGTAGCTTTACAATTGA 58.444 34.615 13.59 0.00 43.25 2.57
3794 4592 6.183360 ACGAATTCTGAAGAGCTGAAACAAAA 60.183 34.615 3.52 0.00 37.87 2.44
3830 4628 0.395724 TCGTGATAGGCTGCTCCTCA 60.396 55.000 0.00 0.00 43.20 3.86
3847 4645 3.184581 CGGAGGTTTCTTCTCAACTTTCG 59.815 47.826 0.00 0.00 33.18 3.46
3903 4701 2.174360 TCAGACAGTCATGGACTCAGG 58.826 52.381 2.66 0.00 41.37 3.86
3904 4702 3.446516 TGATCAGACAGTCATGGACTCAG 59.553 47.826 2.66 0.00 41.37 3.35
3905 4703 3.434309 TGATCAGACAGTCATGGACTCA 58.566 45.455 2.66 1.90 41.37 3.41
3906 4704 3.698539 TCTGATCAGACAGTCATGGACTC 59.301 47.826 21.67 0.00 34.99 3.36
3908 4706 3.737663 GCTCTGATCAGACAGTCATGGAC 60.738 52.174 21.67 2.89 38.79 4.02
3911 4709 3.188492 GTGCTCTGATCAGACAGTCATG 58.812 50.000 21.67 11.02 38.79 3.07
3913 4711 1.547820 GGTGCTCTGATCAGACAGTCA 59.452 52.381 21.67 13.34 38.79 3.41
3914 4712 1.134848 GGGTGCTCTGATCAGACAGTC 60.135 57.143 21.67 16.44 38.79 3.51
3920 4722 3.834489 ACTAATGGGTGCTCTGATCAG 57.166 47.619 17.07 17.07 0.00 2.90
3973 4776 1.973138 GCACAAAGTATGCAGCACTG 58.027 50.000 0.00 0.00 42.88 3.66
4015 4829 1.372582 TCCAGCTGCGAATCAATCAC 58.627 50.000 8.66 0.00 0.00 3.06
4120 4934 0.118346 TATGTCCCTCAGGGTGGTGT 59.882 55.000 10.50 0.00 44.74 4.16
4144 4958 1.468506 GGGAGGAGCGAGGATCTTCC 61.469 65.000 3.70 3.70 42.29 3.46
4253 5067 0.328258 CCCCTTCGGTGTGGATCTTT 59.672 55.000 0.00 0.00 0.00 2.52
4277 5091 0.038599 TTGTGATGGTGATGCTGCCT 59.961 50.000 0.00 0.00 0.00 4.75
4316 5130 1.784856 CACGGCGGTAATATGAACGAG 59.215 52.381 13.24 0.00 0.00 4.18
4328 5142 1.153628 CTAAAGCTAGCACGGCGGT 60.154 57.895 18.83 0.00 34.52 5.68
4356 5170 3.490526 CACTTCTTTGGCCACAAAAATCG 59.509 43.478 3.88 0.00 45.27 3.34
4386 5200 0.104120 GAACAACCAACCCAGCCAAC 59.896 55.000 0.00 0.00 0.00 3.77
4388 5202 0.032615 AAGAACAACCAACCCAGCCA 60.033 50.000 0.00 0.00 0.00 4.75
4399 5223 5.119125 GGTCAAATATTGCAGCAAGAACAAC 59.881 40.000 14.47 7.28 0.00 3.32
4401 5225 4.523943 AGGTCAAATATTGCAGCAAGAACA 59.476 37.500 14.47 0.00 0.00 3.18
4402 5226 5.064441 AGGTCAAATATTGCAGCAAGAAC 57.936 39.130 14.47 7.58 0.00 3.01
4405 5229 4.439700 CCAGAGGTCAAATATTGCAGCAAG 60.440 45.833 14.47 0.00 0.00 4.01
4406 5230 3.444742 CCAGAGGTCAAATATTGCAGCAA 59.555 43.478 11.07 11.07 0.00 3.91
4415 5239 4.927267 ACAATCCACCAGAGGTCAAATA 57.073 40.909 0.00 0.00 31.02 1.40
4425 5249 2.225017 ACCAACCCTAACAATCCACCAG 60.225 50.000 0.00 0.00 0.00 4.00
4428 5252 3.254903 GTCAACCAACCCTAACAATCCAC 59.745 47.826 0.00 0.00 0.00 4.02
4432 5256 3.117284 ACCAGTCAACCAACCCTAACAAT 60.117 43.478 0.00 0.00 0.00 2.71
4473 5298 1.341209 CACTGCCTACACACAGAGACA 59.659 52.381 0.00 0.00 37.35 3.41
4474 5299 1.337260 CCACTGCCTACACACAGAGAC 60.337 57.143 0.00 0.00 37.35 3.36
4475 5300 0.969149 CCACTGCCTACACACAGAGA 59.031 55.000 0.00 0.00 37.35 3.10
4476 5301 0.036952 CCCACTGCCTACACACAGAG 60.037 60.000 0.00 0.00 37.35 3.35
4477 5302 0.762842 ACCCACTGCCTACACACAGA 60.763 55.000 0.00 0.00 37.35 3.41
4478 5303 0.108585 AACCCACTGCCTACACACAG 59.891 55.000 0.00 0.00 39.86 3.66
4479 5304 0.548989 AAACCCACTGCCTACACACA 59.451 50.000 0.00 0.00 0.00 3.72
4480 5305 0.951558 CAAACCCACTGCCTACACAC 59.048 55.000 0.00 0.00 0.00 3.82
4501 5326 5.009610 GGACCAACATGAAAACACACACTAT 59.990 40.000 0.00 0.00 0.00 2.12
4505 5330 3.092301 TGGACCAACATGAAAACACACA 58.908 40.909 0.00 0.00 0.00 3.72
4570 5395 5.779922 TGATCTCACCAAACTACTACACAC 58.220 41.667 0.00 0.00 0.00 3.82
4603 5435 5.454755 GCTGGGATAGATAGGTACTGCAAAA 60.455 44.000 0.00 0.00 41.52 2.44
4611 5443 3.663136 AGTGAGGCTGGGATAGATAGGTA 59.337 47.826 0.00 0.00 0.00 3.08
4618 5455 1.342819 GTAGCAGTGAGGCTGGGATAG 59.657 57.143 0.00 0.00 45.44 2.08
4621 5458 0.618680 ATGTAGCAGTGAGGCTGGGA 60.619 55.000 0.00 0.00 45.44 4.37
4662 5586 5.012046 TCAGACTTTCAGAGTTTCAGGCATA 59.988 40.000 0.00 0.00 39.19 3.14
4678 5602 5.239525 GTGGTACAAGCAAGATTCAGACTTT 59.760 40.000 0.00 0.00 44.16 2.66
4753 5677 0.316522 ATCATCCGGCTGTCTGATCG 59.683 55.000 5.00 0.00 0.00 3.69
4799 5737 6.186957 TGTCACTTAATCTTAGTACGGGGTA 58.813 40.000 0.00 0.00 0.00 3.69
4800 5738 5.018809 TGTCACTTAATCTTAGTACGGGGT 58.981 41.667 0.00 0.00 0.00 4.95
4818 5761 5.491982 ACCAATTACTGAGAATCCTGTCAC 58.508 41.667 0.00 0.00 0.00 3.67
4830 5773 7.016153 ACAAGATCTTGGTACCAATTACTGA 57.984 36.000 33.11 19.92 44.45 3.41
4899 5864 2.128821 CTGCTGATGATGAAGAGCTCG 58.871 52.381 8.37 0.00 32.41 5.03
4906 5871 0.745486 CCCACGCTGCTGATGATGAA 60.745 55.000 0.00 0.00 0.00 2.57
4917 5882 2.185350 CTCTACTGCCCCACGCTG 59.815 66.667 0.00 0.00 41.91 5.18
4918 5883 3.775654 GCTCTACTGCCCCACGCT 61.776 66.667 0.00 0.00 38.78 5.07
4920 5885 4.514577 CCGCTCTACTGCCCCACG 62.515 72.222 0.00 0.00 0.00 4.94
4975 5940 3.876341 TCTACTTCTCTTCCGGACTCTC 58.124 50.000 1.83 0.00 0.00 3.20
4976 5941 4.204012 CATCTACTTCTCTTCCGGACTCT 58.796 47.826 1.83 0.00 0.00 3.24
4983 5948 2.769095 ACCCAGCATCTACTTCTCTTCC 59.231 50.000 0.00 0.00 0.00 3.46
5004 5969 3.828451 TCATCATCACTCACAGTCTCACA 59.172 43.478 0.00 0.00 0.00 3.58
5005 5970 4.446994 TCATCATCACTCACAGTCTCAC 57.553 45.455 0.00 0.00 0.00 3.51
5006 5971 4.708421 TCATCATCATCACTCACAGTCTCA 59.292 41.667 0.00 0.00 0.00 3.27
5008 5973 5.128991 ACATCATCATCATCACTCACAGTCT 59.871 40.000 0.00 0.00 0.00 3.24
5010 5975 5.354842 ACATCATCATCATCACTCACAGT 57.645 39.130 0.00 0.00 0.00 3.55
5011 5976 4.750598 GGACATCATCATCATCACTCACAG 59.249 45.833 0.00 0.00 0.00 3.66
5047 6012 2.687200 CCAGGACCCGTGGATGGA 60.687 66.667 0.00 0.00 37.23 3.41
5059 6024 0.563173 AATCCTCCTCCGATCCAGGA 59.437 55.000 7.66 7.66 39.42 3.86
5102 6067 3.402681 ATCACAGGACAGGGCCCG 61.403 66.667 18.44 14.39 0.00 6.13
5103 6068 2.273449 CATCACAGGACAGGGCCC 59.727 66.667 16.46 16.46 0.00 5.80
5104 6069 2.273449 CCATCACAGGACAGGGCC 59.727 66.667 0.00 0.00 0.00 5.80
5105 6070 2.439156 GCCATCACAGGACAGGGC 60.439 66.667 0.00 0.00 32.92 5.19
5106 6071 2.273449 GGCCATCACAGGACAGGG 59.727 66.667 0.00 0.00 36.38 4.45
5107 6072 3.080641 TGGCCATCACAGGACAGG 58.919 61.111 0.00 0.00 43.33 4.00
5260 6444 1.809684 TCGAGACTCGAGAGCTTGAA 58.190 50.000 23.27 7.24 44.82 2.69
5270 6454 2.917971 GGAGTTGAATTGTCGAGACTCG 59.082 50.000 18.91 18.91 42.10 4.18
5271 6455 3.923461 CAGGAGTTGAATTGTCGAGACTC 59.077 47.826 4.78 0.00 33.46 3.36
5272 6456 3.862642 GCAGGAGTTGAATTGTCGAGACT 60.863 47.826 4.78 0.00 0.00 3.24
5273 6457 2.413453 GCAGGAGTTGAATTGTCGAGAC 59.587 50.000 0.00 0.00 0.00 3.36
5342 6526 0.756294 TTGGAAGCTCACAGAACCGA 59.244 50.000 0.00 0.00 0.00 4.69
5395 6579 4.241555 GATGCCTCCACCGCCGAT 62.242 66.667 0.00 0.00 0.00 4.18
5407 6592 2.589492 CGACCAAGATCGCGATGCC 61.589 63.158 29.09 13.42 34.90 4.40
5486 6672 1.597797 TTGTACGTCCGGCCTCGATT 61.598 55.000 17.33 2.37 39.00 3.34
5505 6691 3.705072 TGGGGTTTTACGGATTTTGTTGT 59.295 39.130 0.00 0.00 0.00 3.32
5509 6695 2.028839 GGGTGGGGTTTTACGGATTTTG 60.029 50.000 0.00 0.00 0.00 2.44
5511 6697 1.147399 TGGGTGGGGTTTTACGGATTT 59.853 47.619 0.00 0.00 0.00 2.17
5512 6698 0.778720 TGGGTGGGGTTTTACGGATT 59.221 50.000 0.00 0.00 0.00 3.01
5513 6699 0.038599 GTGGGTGGGGTTTTACGGAT 59.961 55.000 0.00 0.00 0.00 4.18
5514 6700 1.351080 TGTGGGTGGGGTTTTACGGA 61.351 55.000 0.00 0.00 0.00 4.69
5515 6701 0.891904 CTGTGGGTGGGGTTTTACGG 60.892 60.000 0.00 0.00 0.00 4.02
5516 6702 1.520600 GCTGTGGGTGGGGTTTTACG 61.521 60.000 0.00 0.00 0.00 3.18
5517 6703 1.520600 CGCTGTGGGTGGGGTTTTAC 61.521 60.000 0.00 0.00 0.00 2.01
5518 6704 1.228306 CGCTGTGGGTGGGGTTTTA 60.228 57.895 0.00 0.00 0.00 1.52
5519 6705 2.520741 CGCTGTGGGTGGGGTTTT 60.521 61.111 0.00 0.00 0.00 2.43
5584 6770 0.029567 GAGACGTATCTGCCTGGACG 59.970 60.000 2.19 0.00 41.02 4.79
5585 6771 1.103803 TGAGACGTATCTGCCTGGAC 58.896 55.000 12.03 0.00 34.34 4.02
5586 6772 1.847328 TTGAGACGTATCTGCCTGGA 58.153 50.000 12.03 0.00 34.34 3.86
5587 6773 2.672961 TTTGAGACGTATCTGCCTGG 57.327 50.000 12.03 0.00 34.34 4.45
5588 6774 4.631377 TGAAATTTGAGACGTATCTGCCTG 59.369 41.667 12.03 0.00 34.34 4.85
5589 6775 4.631813 GTGAAATTTGAGACGTATCTGCCT 59.368 41.667 12.03 0.00 34.34 4.75
5590 6776 4.492570 CGTGAAATTTGAGACGTATCTGCC 60.493 45.833 12.03 0.00 34.34 4.85
5591 6777 4.326278 TCGTGAAATTTGAGACGTATCTGC 59.674 41.667 12.03 0.00 34.34 4.26
5592 6778 5.573282 ACTCGTGAAATTTGAGACGTATCTG 59.427 40.000 12.03 3.39 34.34 2.90
5593 6779 5.710984 ACTCGTGAAATTTGAGACGTATCT 58.289 37.500 12.03 0.00 38.15 1.98
5594 6780 6.234213 CAACTCGTGAAATTTGAGACGTATC 58.766 40.000 2.50 2.50 33.93 2.24
5595 6781 5.389516 GCAACTCGTGAAATTTGAGACGTAT 60.390 40.000 10.16 0.00 33.93 3.06
5596 6782 4.084745 GCAACTCGTGAAATTTGAGACGTA 60.085 41.667 10.16 0.90 33.93 3.57
5597 6783 3.303132 GCAACTCGTGAAATTTGAGACGT 60.303 43.478 10.16 0.00 33.93 4.34
5598 6784 3.218398 GCAACTCGTGAAATTTGAGACG 58.782 45.455 10.16 8.72 33.93 4.18
5599 6785 4.209452 TGCAACTCGTGAAATTTGAGAC 57.791 40.909 10.16 0.00 33.93 3.36
5600 6786 4.083324 GGATGCAACTCGTGAAATTTGAGA 60.083 41.667 10.16 0.18 33.93 3.27
5601 6787 4.161333 GGATGCAACTCGTGAAATTTGAG 58.839 43.478 0.00 0.00 35.85 3.02
5602 6788 3.364864 CGGATGCAACTCGTGAAATTTGA 60.365 43.478 0.00 0.00 0.00 2.69
5603 6789 2.910482 CGGATGCAACTCGTGAAATTTG 59.090 45.455 0.00 0.00 0.00 2.32
5604 6790 2.095263 CCGGATGCAACTCGTGAAATTT 60.095 45.455 0.00 0.00 0.00 1.82
5605 6791 1.468520 CCGGATGCAACTCGTGAAATT 59.531 47.619 0.00 0.00 0.00 1.82
5606 6792 1.086696 CCGGATGCAACTCGTGAAAT 58.913 50.000 0.00 0.00 0.00 2.17
5607 6793 0.034198 TCCGGATGCAACTCGTGAAA 59.966 50.000 0.00 0.00 0.00 2.69
5608 6794 0.669318 GTCCGGATGCAACTCGTGAA 60.669 55.000 7.81 0.00 0.00 3.18
5609 6795 1.080093 GTCCGGATGCAACTCGTGA 60.080 57.895 7.81 0.00 0.00 4.35
5610 6796 0.740868 ATGTCCGGATGCAACTCGTG 60.741 55.000 7.81 0.00 0.00 4.35
5611 6797 0.460284 GATGTCCGGATGCAACTCGT 60.460 55.000 7.81 0.00 0.00 4.18
5612 6798 0.179100 AGATGTCCGGATGCAACTCG 60.179 55.000 7.81 0.00 0.00 4.18
5613 6799 2.029838 AAGATGTCCGGATGCAACTC 57.970 50.000 7.81 0.00 0.00 3.01
5614 6800 3.845781 ATAAGATGTCCGGATGCAACT 57.154 42.857 7.81 2.79 0.00 3.16
5615 6801 4.632153 AGTATAAGATGTCCGGATGCAAC 58.368 43.478 7.81 0.00 0.00 4.17
5616 6802 4.955811 AGTATAAGATGTCCGGATGCAA 57.044 40.909 7.81 0.00 0.00 4.08
5617 6803 5.077564 ACTAGTATAAGATGTCCGGATGCA 58.922 41.667 7.81 1.18 0.00 3.96
5618 6804 5.646577 ACTAGTATAAGATGTCCGGATGC 57.353 43.478 7.81 0.00 0.00 3.91
5619 6805 8.740123 ATCTACTAGTATAAGATGTCCGGATG 57.260 38.462 7.81 0.00 0.00 3.51
5620 6806 9.398538 GAATCTACTAGTATAAGATGTCCGGAT 57.601 37.037 7.81 0.00 30.50 4.18
5621 6807 8.789825 GAATCTACTAGTATAAGATGTCCGGA 57.210 38.462 0.00 0.00 30.50 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.