Multiple sequence alignment - TraesCS3B01G458300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G458300 chr3B 100.000 2731 0 0 1 2731 700798465 700801195 0.000000e+00 5044.0
1 TraesCS3B01G458300 chr3B 90.083 2279 181 21 1 2270 700809373 700811615 0.000000e+00 2915.0
2 TraesCS3B01G458300 chr3B 88.544 2191 205 25 1 2182 478551394 478549241 0.000000e+00 2614.0
3 TraesCS3B01G458300 chr3B 96.429 56 1 1 2270 2324 700824737 700824792 1.040000e-14 91.6
4 TraesCS3B01G458300 chr7D 90.142 2181 191 15 1 2177 432740982 432738822 0.000000e+00 2815.0
5 TraesCS3B01G458300 chr7D 86.806 576 62 7 1 572 182352890 182353455 4.960000e-177 630.0
6 TraesCS3B01G458300 chr3A 89.995 2179 167 17 1 2176 418766068 418763938 0.000000e+00 2769.0
7 TraesCS3B01G458300 chr4D 89.685 2191 190 20 2 2178 421049082 421046914 0.000000e+00 2761.0
8 TraesCS3B01G458300 chr4D 89.630 2189 173 22 1 2181 493971527 493969385 0.000000e+00 2736.0
9 TraesCS3B01G458300 chr4D 89.387 2186 202 18 1 2180 48684372 48682211 0.000000e+00 2724.0
10 TraesCS3B01G458300 chr6B 88.453 2191 199 25 1 2176 81980624 81982775 0.000000e+00 2595.0
11 TraesCS3B01G458300 chr6B 85.423 638 75 12 2 628 674355734 674355104 0.000000e+00 647.0
12 TraesCS3B01G458300 chr4A 89.165 2095 203 11 87 2178 327748724 327746651 0.000000e+00 2590.0
13 TraesCS3B01G458300 chr4A 87.546 2192 214 28 3 2177 60891167 60893316 0.000000e+00 2481.0
14 TraesCS3B01G458300 chr1A 90.081 1845 163 11 338 2176 327012029 327010199 0.000000e+00 2375.0
15 TraesCS3B01G458300 chr5B 90.685 1782 155 8 408 2185 375712287 375710513 0.000000e+00 2361.0
16 TraesCS3B01G458300 chr1B 89.173 1875 182 13 317 2185 192470244 192468385 0.000000e+00 2318.0
17 TraesCS3B01G458300 chr1D 90.087 1372 122 8 1 1370 338633146 338634505 0.000000e+00 1768.0
18 TraesCS3B01G458300 chr7B 94.175 103 6 0 2190 2292 389277117 389277219 1.010000e-34 158.0
19 TraesCS3B01G458300 chr6A 93.333 105 7 0 2188 2292 53494644 53494748 3.640000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G458300 chr3B 700798465 700801195 2730 False 5044 5044 100.000 1 2731 1 chr3B.!!$F1 2730
1 TraesCS3B01G458300 chr3B 700809373 700811615 2242 False 2915 2915 90.083 1 2270 1 chr3B.!!$F2 2269
2 TraesCS3B01G458300 chr3B 478549241 478551394 2153 True 2614 2614 88.544 1 2182 1 chr3B.!!$R1 2181
3 TraesCS3B01G458300 chr7D 432738822 432740982 2160 True 2815 2815 90.142 1 2177 1 chr7D.!!$R1 2176
4 TraesCS3B01G458300 chr7D 182352890 182353455 565 False 630 630 86.806 1 572 1 chr7D.!!$F1 571
5 TraesCS3B01G458300 chr3A 418763938 418766068 2130 True 2769 2769 89.995 1 2176 1 chr3A.!!$R1 2175
6 TraesCS3B01G458300 chr4D 421046914 421049082 2168 True 2761 2761 89.685 2 2178 1 chr4D.!!$R2 2176
7 TraesCS3B01G458300 chr4D 493969385 493971527 2142 True 2736 2736 89.630 1 2181 1 chr4D.!!$R3 2180
8 TraesCS3B01G458300 chr4D 48682211 48684372 2161 True 2724 2724 89.387 1 2180 1 chr4D.!!$R1 2179
9 TraesCS3B01G458300 chr6B 81980624 81982775 2151 False 2595 2595 88.453 1 2176 1 chr6B.!!$F1 2175
10 TraesCS3B01G458300 chr6B 674355104 674355734 630 True 647 647 85.423 2 628 1 chr6B.!!$R1 626
11 TraesCS3B01G458300 chr4A 327746651 327748724 2073 True 2590 2590 89.165 87 2178 1 chr4A.!!$R1 2091
12 TraesCS3B01G458300 chr4A 60891167 60893316 2149 False 2481 2481 87.546 3 2177 1 chr4A.!!$F1 2174
13 TraesCS3B01G458300 chr1A 327010199 327012029 1830 True 2375 2375 90.081 338 2176 1 chr1A.!!$R1 1838
14 TraesCS3B01G458300 chr5B 375710513 375712287 1774 True 2361 2361 90.685 408 2185 1 chr5B.!!$R1 1777
15 TraesCS3B01G458300 chr1B 192468385 192470244 1859 True 2318 2318 89.173 317 2185 1 chr1B.!!$R1 1868
16 TraesCS3B01G458300 chr1D 338633146 338634505 1359 False 1768 1768 90.087 1 1370 1 chr1D.!!$F1 1369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 661 0.678684 TCGATCTGCCAGGTACGACA 60.679 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 2493 0.179 CGCACTAGGGCCTCAAAGAT 59.821 55.0 10.74 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.431057 CCGACAGTTATTAGCCTCACCT 59.569 50.000 0.00 0.00 0.00 4.00
272 286 1.137086 AGATTCGATCCACGGTGAAGG 59.863 52.381 10.28 0.00 42.82 3.46
313 332 4.214971 GGTAGATAAGCATGGCAGTTCATG 59.785 45.833 0.00 0.00 45.26 3.07
336 415 6.495706 TGCTAGTTCATACGAGTTCATACTG 58.504 40.000 0.00 0.00 33.84 2.74
366 445 8.747471 CATGCAAGATCAGAATAGAGGTAGATA 58.253 37.037 0.00 0.00 0.00 1.98
385 464 2.544844 ACGGATGAAGTAGAAGGGGA 57.455 50.000 0.00 0.00 0.00 4.81
390 477 4.384208 CGGATGAAGTAGAAGGGGAATTGT 60.384 45.833 0.00 0.00 0.00 2.71
399 486 1.392407 AGGGGAATTGTGGGATTGGA 58.608 50.000 0.00 0.00 0.00 3.53
430 524 0.860618 GACACTAGCTAACCGCGACG 60.861 60.000 8.23 0.00 45.59 5.12
470 564 1.296392 CGGTGGATCAAGTGGCTGA 59.704 57.895 0.00 0.00 0.00 4.26
555 661 0.678684 TCGATCTGCCAGGTACGACA 60.679 55.000 0.00 0.00 0.00 4.35
977 1102 2.283894 CCCAAGGGAAGGGGTTGC 60.284 66.667 0.00 0.00 42.90 4.17
978 1103 2.525592 CCAAGGGAAGGGGTTGCA 59.474 61.111 0.00 0.00 0.00 4.08
1136 1266 4.083537 TGCCGTTTTAACTACATGCTCTTG 60.084 41.667 0.00 0.00 0.00 3.02
1150 1280 5.597182 ACATGCTCTTGAATAAGCCATGAAT 59.403 36.000 18.42 4.23 41.13 2.57
1177 1307 2.118313 TGTGCCTGACTCCATGAATG 57.882 50.000 0.00 0.00 0.00 2.67
1235 1365 2.743928 GCTCCCGGCTGTTGACAG 60.744 66.667 6.77 6.77 46.40 3.51
1258 1388 1.026718 GGGCAAGGAGTCGGTTCATG 61.027 60.000 0.00 0.00 0.00 3.07
1302 1432 2.920912 ACCGCCGAGGAAGAACCA 60.921 61.111 3.89 0.00 45.00 3.67
1411 1541 0.595095 CCCAAGTCACTTCTGCAAGC 59.405 55.000 0.00 0.00 32.09 4.01
1512 1643 2.624838 CAAGCTGAGGAACAACATTGGT 59.375 45.455 0.00 0.00 0.00 3.67
1514 1645 3.299503 AGCTGAGGAACAACATTGGTTT 58.700 40.909 0.00 0.00 34.21 3.27
1530 1661 1.353091 GTTTCTCCTGGAGGGTGACT 58.647 55.000 23.00 0.00 37.33 3.41
1556 1688 0.107508 CTGATGAACGGCAGGGTGAT 60.108 55.000 0.00 0.00 0.00 3.06
1572 1704 1.561542 GTGATCCTGGATCAGGGTTGT 59.438 52.381 33.86 0.00 46.20 3.32
1604 1737 3.875727 CTGCCGTTCATCAGATCAAGATT 59.124 43.478 0.00 0.00 32.26 2.40
1711 1844 0.675083 TACGGGAAGCACAACGAAGA 59.325 50.000 0.00 0.00 0.00 2.87
1725 1858 3.591254 GAAGACTTCGCCGCCAGGT 62.591 63.158 0.00 0.00 40.50 4.00
1775 1917 5.764131 AGTACTATCGAGTCTGCTTTATGC 58.236 41.667 0.00 0.00 38.51 3.14
1792 1934 2.987413 TGCTTTATGCGTTGAACTGG 57.013 45.000 0.00 0.00 46.63 4.00
1894 2043 2.102925 TCTGCTCTGTTGTGATGTGTGA 59.897 45.455 0.00 0.00 0.00 3.58
1917 2066 2.083774 CATGGTTATGCCGAAGTGTGT 58.916 47.619 0.00 0.00 41.21 3.72
1957 2106 2.748465 GCCAAAGAGGTTACCACACACT 60.748 50.000 3.51 0.00 40.61 3.55
2008 2158 3.586470 TGGGTTTGTCCACTAACATGT 57.414 42.857 0.00 0.00 38.11 3.21
2014 2165 3.610040 TGTCCACTAACATGTAGGCAG 57.390 47.619 0.00 0.00 0.00 4.85
2031 2182 1.271163 GCAGCCAAACACCAGGTAGTA 60.271 52.381 0.00 0.00 0.00 1.82
2069 2221 1.228956 AAGAGGGCATGCAGGCAAA 60.229 52.632 26.25 0.00 46.44 3.68
2191 2344 1.402720 CGCCCTTTGTTGTGCATAAGG 60.403 52.381 0.00 2.23 36.26 2.69
2199 2352 3.630168 TGTTGTGCATAAGGGCATGTAT 58.370 40.909 0.00 0.00 46.92 2.29
2208 2361 2.147946 AGGGCATGTATAATGGGGGA 57.852 50.000 0.00 0.00 0.00 4.81
2215 2368 2.209758 TGTATAATGGGGGAAGCACCA 58.790 47.619 2.58 0.00 41.76 4.17
2239 2392 1.298340 CTGCCCCAACATCCACGTA 59.702 57.895 0.00 0.00 0.00 3.57
2262 2415 4.277174 AGGAGTACAGTAGATGAAGCATCG 59.723 45.833 0.00 0.00 44.67 3.84
2263 2416 4.541779 GAGTACAGTAGATGAAGCATCGG 58.458 47.826 0.00 0.00 44.67 4.18
2277 2430 2.996155 GCATCGGCTTCATTCTTGATG 58.004 47.619 0.00 0.00 37.01 3.07
2278 2431 2.357009 GCATCGGCTTCATTCTTGATGT 59.643 45.455 0.00 0.00 36.48 3.06
2279 2432 3.791122 GCATCGGCTTCATTCTTGATGTG 60.791 47.826 0.00 0.00 36.48 3.21
2280 2433 2.358957 TCGGCTTCATTCTTGATGTGG 58.641 47.619 0.00 0.00 37.06 4.17
2281 2434 2.086869 CGGCTTCATTCTTGATGTGGT 58.913 47.619 0.00 0.00 37.06 4.16
2282 2435 2.096496 CGGCTTCATTCTTGATGTGGTC 59.904 50.000 0.00 0.00 37.06 4.02
2283 2436 2.424956 GGCTTCATTCTTGATGTGGTCC 59.575 50.000 0.00 0.00 37.06 4.46
2284 2437 2.096496 GCTTCATTCTTGATGTGGTCCG 59.904 50.000 0.00 0.00 37.06 4.79
2285 2438 3.338249 CTTCATTCTTGATGTGGTCCGT 58.662 45.455 0.00 0.00 37.06 4.69
2286 2439 4.503910 CTTCATTCTTGATGTGGTCCGTA 58.496 43.478 0.00 0.00 37.06 4.02
2287 2440 3.857052 TCATTCTTGATGTGGTCCGTAC 58.143 45.455 0.00 0.00 37.06 3.67
2288 2441 2.754946 TTCTTGATGTGGTCCGTACC 57.245 50.000 0.00 0.00 46.98 3.34
2289 2442 5.840005 TCATTCTTGATGTGGTCCGTACCA 61.840 45.833 0.00 0.00 46.38 3.25
2296 2449 3.132084 GGTCCGTACCATACCCGG 58.868 66.667 0.00 0.00 45.98 5.73
2297 2450 2.501602 GGTCCGTACCATACCCGGG 61.502 68.421 22.25 22.25 45.98 5.73
2298 2451 2.839162 TCCGTACCATACCCGGGC 60.839 66.667 24.08 0.00 41.98 6.13
2299 2452 3.932483 CCGTACCATACCCGGGCC 61.932 72.222 24.08 0.00 38.09 5.80
2300 2453 3.155861 CGTACCATACCCGGGCCA 61.156 66.667 24.08 9.66 0.00 5.36
2301 2454 2.733669 CGTACCATACCCGGGCCAA 61.734 63.158 24.08 6.86 0.00 4.52
2302 2455 1.153107 GTACCATACCCGGGCCAAC 60.153 63.158 24.08 6.83 0.00 3.77
2303 2456 2.376987 TACCATACCCGGGCCAACC 61.377 63.158 24.08 0.00 0.00 3.77
2304 2457 2.843743 TACCATACCCGGGCCAACCT 62.844 60.000 24.08 1.22 36.97 3.50
2305 2458 2.124320 CATACCCGGGCCAACCTG 60.124 66.667 24.08 5.22 42.66 4.00
2311 2464 2.824041 CGGGCCAACCTGGATTCG 60.824 66.667 4.39 0.00 40.96 3.34
2312 2465 2.440247 GGGCCAACCTGGATTCGG 60.440 66.667 4.39 0.00 40.96 4.30
2313 2466 3.140814 GGCCAACCTGGATTCGGC 61.141 66.667 0.00 6.30 40.96 5.54
2314 2467 3.140814 GCCAACCTGGATTCGGCC 61.141 66.667 0.00 0.00 40.96 6.13
2315 2468 2.354729 CCAACCTGGATTCGGCCA 59.645 61.111 2.24 0.00 40.96 5.36
2316 2469 2.046285 CCAACCTGGATTCGGCCAC 61.046 63.158 2.24 0.00 40.96 5.01
2317 2470 2.046314 AACCTGGATTCGGCCACG 60.046 61.111 2.24 0.00 42.74 4.94
2318 2471 4.778143 ACCTGGATTCGGCCACGC 62.778 66.667 2.24 0.00 40.69 5.34
2346 2499 3.142838 CCGGCCCTGGCATCTTTG 61.143 66.667 10.86 0.00 44.11 2.77
2347 2500 2.045045 CGGCCCTGGCATCTTTGA 60.045 61.111 10.86 0.00 44.11 2.69
2348 2501 2.117156 CGGCCCTGGCATCTTTGAG 61.117 63.158 10.86 0.00 44.11 3.02
2349 2502 1.755783 GGCCCTGGCATCTTTGAGG 60.756 63.158 10.86 0.00 44.11 3.86
2350 2503 2.421399 GCCCTGGCATCTTTGAGGC 61.421 63.158 2.58 0.00 41.49 4.70
2357 2510 1.673168 GCATCTTTGAGGCCCTAGTG 58.327 55.000 0.00 0.00 32.93 2.74
2358 2511 1.673168 CATCTTTGAGGCCCTAGTGC 58.327 55.000 0.00 0.00 0.00 4.40
2359 2512 0.179000 ATCTTTGAGGCCCTAGTGCG 59.821 55.000 0.00 0.00 0.00 5.34
2360 2513 0.902984 TCTTTGAGGCCCTAGTGCGA 60.903 55.000 0.00 0.00 0.00 5.10
2361 2514 0.741221 CTTTGAGGCCCTAGTGCGAC 60.741 60.000 0.00 0.00 0.00 5.19
2362 2515 2.180159 TTTGAGGCCCTAGTGCGACC 62.180 60.000 0.00 0.00 0.00 4.79
2363 2516 3.851128 GAGGCCCTAGTGCGACCC 61.851 72.222 0.00 0.00 0.00 4.46
2367 2520 2.440796 CCCTAGTGCGACCCGGTA 60.441 66.667 0.00 0.00 0.00 4.02
2368 2521 2.779033 CCCTAGTGCGACCCGGTAC 61.779 68.421 0.00 0.00 0.00 3.34
2391 2544 4.647564 ATGGGCCCATCAGTTATTCTAG 57.352 45.455 32.75 0.00 29.42 2.43
2392 2545 3.393687 TGGGCCCATCAGTTATTCTAGT 58.606 45.455 24.45 0.00 0.00 2.57
2393 2546 4.562767 TGGGCCCATCAGTTATTCTAGTA 58.437 43.478 24.45 0.00 0.00 1.82
2394 2547 4.593206 TGGGCCCATCAGTTATTCTAGTAG 59.407 45.833 24.45 0.00 0.00 2.57
2395 2548 4.020128 GGGCCCATCAGTTATTCTAGTAGG 60.020 50.000 19.95 0.00 0.00 3.18
2396 2549 4.020128 GGCCCATCAGTTATTCTAGTAGGG 60.020 50.000 0.00 0.00 35.68 3.53
2397 2550 4.593634 GCCCATCAGTTATTCTAGTAGGGT 59.406 45.833 0.00 0.00 35.04 4.34
2398 2551 5.071923 GCCCATCAGTTATTCTAGTAGGGTT 59.928 44.000 0.00 0.00 35.04 4.11
2399 2552 6.269307 GCCCATCAGTTATTCTAGTAGGGTTA 59.731 42.308 0.00 0.00 35.04 2.85
2400 2553 7.202066 GCCCATCAGTTATTCTAGTAGGGTTAA 60.202 40.741 0.00 0.00 35.04 2.01
2401 2554 8.711170 CCCATCAGTTATTCTAGTAGGGTTAAA 58.289 37.037 0.00 0.00 0.00 1.52
2404 2557 9.813446 ATCAGTTATTCTAGTAGGGTTAAAACG 57.187 33.333 0.00 0.00 0.00 3.60
2405 2558 8.806146 TCAGTTATTCTAGTAGGGTTAAAACGT 58.194 33.333 0.00 0.00 0.00 3.99
2406 2559 8.866956 CAGTTATTCTAGTAGGGTTAAAACGTG 58.133 37.037 0.00 0.00 0.00 4.49
2407 2560 7.547019 AGTTATTCTAGTAGGGTTAAAACGTGC 59.453 37.037 0.00 0.00 0.00 5.34
2408 2561 4.192429 TCTAGTAGGGTTAAAACGTGCC 57.808 45.455 0.00 0.00 0.00 5.01
2409 2562 3.834231 TCTAGTAGGGTTAAAACGTGCCT 59.166 43.478 0.00 0.00 0.00 4.75
2410 2563 5.016173 TCTAGTAGGGTTAAAACGTGCCTA 58.984 41.667 0.00 0.00 0.00 3.93
2411 2564 4.198028 AGTAGGGTTAAAACGTGCCTAG 57.802 45.455 0.00 0.00 0.00 3.02
2412 2565 1.817357 AGGGTTAAAACGTGCCTAGC 58.183 50.000 0.00 0.00 0.00 3.42
2413 2566 1.350019 AGGGTTAAAACGTGCCTAGCT 59.650 47.619 0.00 0.00 0.00 3.32
2414 2567 2.568509 AGGGTTAAAACGTGCCTAGCTA 59.431 45.455 0.00 0.00 0.00 3.32
2415 2568 3.199289 AGGGTTAAAACGTGCCTAGCTAT 59.801 43.478 0.00 0.00 0.00 2.97
2416 2569 4.406649 AGGGTTAAAACGTGCCTAGCTATA 59.593 41.667 0.00 0.00 0.00 1.31
2417 2570 4.509230 GGGTTAAAACGTGCCTAGCTATAC 59.491 45.833 0.00 0.00 0.00 1.47
2418 2571 5.111293 GGTTAAAACGTGCCTAGCTATACA 58.889 41.667 0.00 0.00 0.00 2.29
2419 2572 5.581874 GGTTAAAACGTGCCTAGCTATACAA 59.418 40.000 0.00 0.00 0.00 2.41
2420 2573 6.259387 GGTTAAAACGTGCCTAGCTATACAAT 59.741 38.462 0.00 0.00 0.00 2.71
2421 2574 5.734855 AAAACGTGCCTAGCTATACAATG 57.265 39.130 0.00 0.00 0.00 2.82
2422 2575 2.755650 ACGTGCCTAGCTATACAATGC 58.244 47.619 0.00 0.00 0.00 3.56
2423 2576 2.365617 ACGTGCCTAGCTATACAATGCT 59.634 45.455 0.00 0.00 42.67 3.79
2424 2577 3.181465 ACGTGCCTAGCTATACAATGCTT 60.181 43.478 0.00 0.00 40.35 3.91
2425 2578 4.038763 ACGTGCCTAGCTATACAATGCTTA 59.961 41.667 0.00 0.00 40.35 3.09
2426 2579 5.171476 CGTGCCTAGCTATACAATGCTTAT 58.829 41.667 0.00 0.00 40.35 1.73
2427 2580 5.639506 CGTGCCTAGCTATACAATGCTTATT 59.360 40.000 0.00 0.00 40.35 1.40
2428 2581 6.811665 CGTGCCTAGCTATACAATGCTTATTA 59.188 38.462 0.00 0.00 40.35 0.98
2429 2582 7.492669 CGTGCCTAGCTATACAATGCTTATTAT 59.507 37.037 0.00 0.00 40.35 1.28
2430 2583 8.607459 GTGCCTAGCTATACAATGCTTATTATG 58.393 37.037 0.00 0.00 40.35 1.90
2431 2584 8.539544 TGCCTAGCTATACAATGCTTATTATGA 58.460 33.333 0.00 0.00 40.35 2.15
2432 2585 9.553064 GCCTAGCTATACAATGCTTATTATGAT 57.447 33.333 0.00 0.00 40.35 2.45
2501 2654 8.964476 ACAAATATGAACTTAGTACATCAGGG 57.036 34.615 0.00 0.00 0.00 4.45
2502 2655 8.768397 ACAAATATGAACTTAGTACATCAGGGA 58.232 33.333 0.00 0.00 0.00 4.20
2503 2656 9.784531 CAAATATGAACTTAGTACATCAGGGAT 57.215 33.333 0.00 0.00 0.00 3.85
2507 2660 6.759272 TGAACTTAGTACATCAGGGATATGC 58.241 40.000 0.00 0.00 0.00 3.14
2508 2661 5.392767 ACTTAGTACATCAGGGATATGCG 57.607 43.478 0.00 0.00 0.00 4.73
2509 2662 5.077564 ACTTAGTACATCAGGGATATGCGA 58.922 41.667 0.00 0.00 0.00 5.10
2510 2663 5.717178 ACTTAGTACATCAGGGATATGCGAT 59.283 40.000 0.00 0.00 0.00 4.58
2511 2664 6.890268 ACTTAGTACATCAGGGATATGCGATA 59.110 38.462 0.00 0.00 0.00 2.92
2512 2665 7.561722 ACTTAGTACATCAGGGATATGCGATAT 59.438 37.037 0.00 0.00 0.00 1.63
2513 2666 8.990163 TTAGTACATCAGGGATATGCGATATA 57.010 34.615 0.00 0.00 0.00 0.86
2514 2667 7.517614 AGTACATCAGGGATATGCGATATAG 57.482 40.000 0.00 0.00 0.00 1.31
2515 2668 5.798125 ACATCAGGGATATGCGATATAGG 57.202 43.478 0.00 0.00 0.00 2.57
2516 2669 5.458595 ACATCAGGGATATGCGATATAGGA 58.541 41.667 0.00 0.00 0.00 2.94
2517 2670 6.080682 ACATCAGGGATATGCGATATAGGAT 58.919 40.000 0.00 0.00 0.00 3.24
2518 2671 7.241628 ACATCAGGGATATGCGATATAGGATA 58.758 38.462 0.00 0.00 0.00 2.59
2519 2672 7.177568 ACATCAGGGATATGCGATATAGGATAC 59.822 40.741 0.00 0.00 0.00 2.24
2520 2673 6.610830 TCAGGGATATGCGATATAGGATACA 58.389 40.000 0.00 0.00 41.41 2.29
2521 2674 7.066781 TCAGGGATATGCGATATAGGATACAA 58.933 38.462 0.00 0.00 41.41 2.41
2522 2675 7.231519 TCAGGGATATGCGATATAGGATACAAG 59.768 40.741 0.00 0.00 41.41 3.16
2523 2676 6.015010 AGGGATATGCGATATAGGATACAAGC 60.015 42.308 0.00 0.00 41.41 4.01
2524 2677 6.015010 GGGATATGCGATATAGGATACAAGCT 60.015 42.308 0.00 0.00 41.41 3.74
2525 2678 7.087639 GGATATGCGATATAGGATACAAGCTC 58.912 42.308 0.00 0.00 41.41 4.09
2526 2679 5.921962 ATGCGATATAGGATACAAGCTCA 57.078 39.130 0.00 0.00 41.41 4.26
2527 2680 5.722021 TGCGATATAGGATACAAGCTCAA 57.278 39.130 0.00 0.00 41.41 3.02
2528 2681 5.470368 TGCGATATAGGATACAAGCTCAAC 58.530 41.667 0.00 0.00 41.41 3.18
2529 2682 5.010617 TGCGATATAGGATACAAGCTCAACA 59.989 40.000 0.00 0.00 41.41 3.33
2530 2683 5.926542 GCGATATAGGATACAAGCTCAACAA 59.073 40.000 0.00 0.00 41.41 2.83
2531 2684 6.128795 GCGATATAGGATACAAGCTCAACAAC 60.129 42.308 0.00 0.00 41.41 3.32
2532 2685 6.366332 CGATATAGGATACAAGCTCAACAACC 59.634 42.308 0.00 0.00 41.41 3.77
2533 2686 3.073274 AGGATACAAGCTCAACAACCC 57.927 47.619 0.00 0.00 41.41 4.11
2534 2687 2.375174 AGGATACAAGCTCAACAACCCA 59.625 45.455 0.00 0.00 41.41 4.51
2535 2688 2.488153 GGATACAAGCTCAACAACCCAC 59.512 50.000 0.00 0.00 0.00 4.61
2536 2689 2.719531 TACAAGCTCAACAACCCACA 57.280 45.000 0.00 0.00 0.00 4.17
2537 2690 1.846007 ACAAGCTCAACAACCCACAA 58.154 45.000 0.00 0.00 0.00 3.33
2538 2691 2.175202 ACAAGCTCAACAACCCACAAA 58.825 42.857 0.00 0.00 0.00 2.83
2539 2692 2.564947 ACAAGCTCAACAACCCACAAAA 59.435 40.909 0.00 0.00 0.00 2.44
2540 2693 3.189285 CAAGCTCAACAACCCACAAAAG 58.811 45.455 0.00 0.00 0.00 2.27
2541 2694 2.456577 AGCTCAACAACCCACAAAAGT 58.543 42.857 0.00 0.00 0.00 2.66
2542 2695 2.427095 AGCTCAACAACCCACAAAAGTC 59.573 45.455 0.00 0.00 0.00 3.01
2543 2696 2.794631 GCTCAACAACCCACAAAAGTCG 60.795 50.000 0.00 0.00 0.00 4.18
2544 2697 2.680841 CTCAACAACCCACAAAAGTCGA 59.319 45.455 0.00 0.00 0.00 4.20
2545 2698 3.283751 TCAACAACCCACAAAAGTCGAT 58.716 40.909 0.00 0.00 0.00 3.59
2546 2699 3.697045 TCAACAACCCACAAAAGTCGATT 59.303 39.130 0.00 0.00 0.00 3.34
2547 2700 4.158764 TCAACAACCCACAAAAGTCGATTT 59.841 37.500 0.00 0.00 0.00 2.17
2548 2701 4.729227 ACAACCCACAAAAGTCGATTTT 57.271 36.364 0.00 0.00 41.91 1.82
2549 2702 5.079689 ACAACCCACAAAAGTCGATTTTT 57.920 34.783 12.36 12.36 39.11 1.94
2576 2729 8.628630 AGAGAAAAGAAATTACAAGGAAGGAG 57.371 34.615 0.00 0.00 0.00 3.69
2577 2730 8.440771 AGAGAAAAGAAATTACAAGGAAGGAGA 58.559 33.333 0.00 0.00 0.00 3.71
2578 2731 8.628630 AGAAAAGAAATTACAAGGAAGGAGAG 57.371 34.615 0.00 0.00 0.00 3.20
2579 2732 8.440771 AGAAAAGAAATTACAAGGAAGGAGAGA 58.559 33.333 0.00 0.00 0.00 3.10
2580 2733 8.996651 AAAAGAAATTACAAGGAAGGAGAGAA 57.003 30.769 0.00 0.00 0.00 2.87
2581 2734 8.996651 AAAGAAATTACAAGGAAGGAGAGAAA 57.003 30.769 0.00 0.00 0.00 2.52
2582 2735 8.628630 AAGAAATTACAAGGAAGGAGAGAAAG 57.371 34.615 0.00 0.00 0.00 2.62
2583 2736 7.750655 AGAAATTACAAGGAAGGAGAGAAAGT 58.249 34.615 0.00 0.00 0.00 2.66
2584 2737 7.663493 AGAAATTACAAGGAAGGAGAGAAAGTG 59.337 37.037 0.00 0.00 0.00 3.16
2585 2738 3.133141 ACAAGGAAGGAGAGAAAGTGC 57.867 47.619 0.00 0.00 0.00 4.40
2586 2739 2.072298 CAAGGAAGGAGAGAAAGTGCG 58.928 52.381 0.00 0.00 0.00 5.34
2587 2740 1.343069 AGGAAGGAGAGAAAGTGCGT 58.657 50.000 0.00 0.00 0.00 5.24
2588 2741 1.001406 AGGAAGGAGAGAAAGTGCGTG 59.999 52.381 0.00 0.00 0.00 5.34
2589 2742 1.000955 GGAAGGAGAGAAAGTGCGTGA 59.999 52.381 0.00 0.00 0.00 4.35
2590 2743 2.548067 GGAAGGAGAGAAAGTGCGTGAA 60.548 50.000 0.00 0.00 0.00 3.18
2591 2744 2.156343 AGGAGAGAAAGTGCGTGAAC 57.844 50.000 0.00 0.00 0.00 3.18
2592 2745 1.149148 GGAGAGAAAGTGCGTGAACC 58.851 55.000 0.00 0.00 0.00 3.62
2593 2746 1.149148 GAGAGAAAGTGCGTGAACCC 58.851 55.000 0.00 0.00 0.00 4.11
2594 2747 0.759346 AGAGAAAGTGCGTGAACCCT 59.241 50.000 0.00 0.00 0.00 4.34
2595 2748 1.149148 GAGAAAGTGCGTGAACCCTC 58.851 55.000 0.00 0.00 0.00 4.30
2596 2749 0.759346 AGAAAGTGCGTGAACCCTCT 59.241 50.000 0.00 0.00 0.00 3.69
2597 2750 0.868406 GAAAGTGCGTGAACCCTCTG 59.132 55.000 0.00 0.00 0.00 3.35
2598 2751 0.468226 AAAGTGCGTGAACCCTCTGA 59.532 50.000 0.00 0.00 0.00 3.27
2599 2752 0.034059 AAGTGCGTGAACCCTCTGAG 59.966 55.000 0.00 0.00 0.00 3.35
2600 2753 1.115930 AGTGCGTGAACCCTCTGAGT 61.116 55.000 3.66 0.00 0.00 3.41
2601 2754 0.667792 GTGCGTGAACCCTCTGAGTC 60.668 60.000 3.66 0.00 0.00 3.36
2602 2755 1.079750 GCGTGAACCCTCTGAGTCC 60.080 63.158 3.66 0.00 0.00 3.85
2603 2756 1.536943 GCGTGAACCCTCTGAGTCCT 61.537 60.000 3.66 0.00 0.00 3.85
2604 2757 0.969894 CGTGAACCCTCTGAGTCCTT 59.030 55.000 3.66 0.00 0.00 3.36
2605 2758 2.168496 CGTGAACCCTCTGAGTCCTTA 58.832 52.381 3.66 0.00 0.00 2.69
2606 2759 2.761208 CGTGAACCCTCTGAGTCCTTAT 59.239 50.000 3.66 0.00 0.00 1.73
2607 2760 3.181485 CGTGAACCCTCTGAGTCCTTATC 60.181 52.174 3.66 0.00 0.00 1.75
2608 2761 4.027437 GTGAACCCTCTGAGTCCTTATCT 58.973 47.826 3.66 0.00 0.00 1.98
2609 2762 4.098807 GTGAACCCTCTGAGTCCTTATCTC 59.901 50.000 3.66 0.00 0.00 2.75
2610 2763 3.322191 ACCCTCTGAGTCCTTATCTCC 57.678 52.381 3.66 0.00 0.00 3.71
2611 2764 2.862597 ACCCTCTGAGTCCTTATCTCCT 59.137 50.000 3.66 0.00 0.00 3.69
2612 2765 3.230134 CCCTCTGAGTCCTTATCTCCTG 58.770 54.545 3.66 0.00 0.00 3.86
2613 2766 3.117322 CCCTCTGAGTCCTTATCTCCTGA 60.117 52.174 3.66 0.00 0.00 3.86
2614 2767 4.144297 CCTCTGAGTCCTTATCTCCTGAG 58.856 52.174 3.66 0.00 34.53 3.35
2615 2768 3.561143 TCTGAGTCCTTATCTCCTGAGC 58.439 50.000 0.00 0.00 0.00 4.26
2616 2769 3.204158 TCTGAGTCCTTATCTCCTGAGCT 59.796 47.826 0.00 0.00 0.00 4.09
2617 2770 3.960102 CTGAGTCCTTATCTCCTGAGCTT 59.040 47.826 0.00 0.00 0.00 3.74
2618 2771 4.357325 TGAGTCCTTATCTCCTGAGCTTT 58.643 43.478 0.00 0.00 0.00 3.51
2619 2772 4.404073 TGAGTCCTTATCTCCTGAGCTTTC 59.596 45.833 0.00 0.00 0.00 2.62
2620 2773 3.383185 AGTCCTTATCTCCTGAGCTTTCG 59.617 47.826 0.00 0.00 0.00 3.46
2621 2774 3.381908 GTCCTTATCTCCTGAGCTTTCGA 59.618 47.826 0.00 0.00 0.00 3.71
2622 2775 4.023980 TCCTTATCTCCTGAGCTTTCGAA 58.976 43.478 0.00 0.00 0.00 3.71
2623 2776 4.651503 TCCTTATCTCCTGAGCTTTCGAAT 59.348 41.667 0.00 0.00 0.00 3.34
2624 2777 5.833667 TCCTTATCTCCTGAGCTTTCGAATA 59.166 40.000 0.00 0.00 0.00 1.75
2625 2778 6.323996 TCCTTATCTCCTGAGCTTTCGAATAA 59.676 38.462 0.00 0.00 0.00 1.40
2626 2779 6.986817 CCTTATCTCCTGAGCTTTCGAATAAA 59.013 38.462 0.00 0.00 0.00 1.40
2627 2780 7.659390 CCTTATCTCCTGAGCTTTCGAATAAAT 59.341 37.037 0.00 0.00 0.00 1.40
2628 2781 8.964476 TTATCTCCTGAGCTTTCGAATAAATT 57.036 30.769 0.00 0.00 0.00 1.82
2632 2785 9.477484 TCTCCTGAGCTTTCGAATAAATTATAC 57.523 33.333 0.00 0.00 0.00 1.47
2633 2786 9.482627 CTCCTGAGCTTTCGAATAAATTATACT 57.517 33.333 0.00 0.00 0.00 2.12
2634 2787 9.477484 TCCTGAGCTTTCGAATAAATTATACTC 57.523 33.333 0.00 0.00 0.00 2.59
2635 2788 8.713271 CCTGAGCTTTCGAATAAATTATACTCC 58.287 37.037 0.00 0.00 0.00 3.85
2636 2789 8.603242 TGAGCTTTCGAATAAATTATACTCCC 57.397 34.615 0.00 0.00 0.00 4.30
2637 2790 8.429641 TGAGCTTTCGAATAAATTATACTCCCT 58.570 33.333 0.00 0.00 0.00 4.20
2638 2791 8.834749 AGCTTTCGAATAAATTATACTCCCTC 57.165 34.615 0.00 0.00 0.00 4.30
2639 2792 7.878644 AGCTTTCGAATAAATTATACTCCCTCC 59.121 37.037 0.00 0.00 0.00 4.30
2640 2793 7.660208 GCTTTCGAATAAATTATACTCCCTCCA 59.340 37.037 0.00 0.00 0.00 3.86
2641 2794 9.726438 CTTTCGAATAAATTATACTCCCTCCAT 57.274 33.333 0.00 0.00 0.00 3.41
2642 2795 9.720769 TTTCGAATAAATTATACTCCCTCCATC 57.279 33.333 0.00 0.00 0.00 3.51
2643 2796 7.848128 TCGAATAAATTATACTCCCTCCATCC 58.152 38.462 0.00 0.00 0.00 3.51
2644 2797 7.456585 TCGAATAAATTATACTCCCTCCATCCA 59.543 37.037 0.00 0.00 0.00 3.41
2645 2798 8.100791 CGAATAAATTATACTCCCTCCATCCAA 58.899 37.037 0.00 0.00 0.00 3.53
2646 2799 9.807921 GAATAAATTATACTCCCTCCATCCAAA 57.192 33.333 0.00 0.00 0.00 3.28
2653 2806 9.586732 TTATACTCCCTCCATCCAAAAATAATG 57.413 33.333 0.00 0.00 0.00 1.90
2654 2807 5.211201 ACTCCCTCCATCCAAAAATAATGG 58.789 41.667 0.00 0.00 41.12 3.16
2655 2808 3.966665 TCCCTCCATCCAAAAATAATGGC 59.033 43.478 0.00 0.00 39.86 4.40
2656 2809 3.071457 CCCTCCATCCAAAAATAATGGCC 59.929 47.826 0.00 0.00 39.86 5.36
2657 2810 3.071457 CCTCCATCCAAAAATAATGGCCC 59.929 47.826 0.00 0.00 39.86 5.80
2658 2811 3.710677 CTCCATCCAAAAATAATGGCCCA 59.289 43.478 0.00 0.00 39.86 5.36
2659 2812 4.107072 TCCATCCAAAAATAATGGCCCAA 58.893 39.130 0.00 0.00 39.86 4.12
2660 2813 4.080638 TCCATCCAAAAATAATGGCCCAAC 60.081 41.667 0.00 0.00 39.86 3.77
2661 2814 4.080413 CCATCCAAAAATAATGGCCCAACT 60.080 41.667 0.00 0.00 37.88 3.16
2662 2815 5.499313 CATCCAAAAATAATGGCCCAACTT 58.501 37.500 0.00 0.00 37.88 2.66
2663 2816 5.159273 TCCAAAAATAATGGCCCAACTTC 57.841 39.130 0.00 0.00 37.88 3.01
2664 2817 3.932089 CCAAAAATAATGGCCCAACTTCG 59.068 43.478 0.00 0.00 0.00 3.79
2665 2818 4.562552 CCAAAAATAATGGCCCAACTTCGT 60.563 41.667 0.00 0.00 0.00 3.85
2666 2819 5.336849 CCAAAAATAATGGCCCAACTTCGTA 60.337 40.000 0.00 0.00 0.00 3.43
2667 2820 5.576447 AAAATAATGGCCCAACTTCGTAG 57.424 39.130 0.00 0.00 0.00 3.51
2668 2821 3.926058 ATAATGGCCCAACTTCGTAGT 57.074 42.857 0.00 0.00 35.68 2.73
2669 2822 5.362105 AATAATGGCCCAACTTCGTAGTA 57.638 39.130 0.00 0.00 33.17 1.82
2670 2823 3.706600 AATGGCCCAACTTCGTAGTAA 57.293 42.857 0.00 0.00 33.17 2.24
2671 2824 3.926058 ATGGCCCAACTTCGTAGTAAT 57.074 42.857 0.00 0.00 33.17 1.89
2672 2825 5.362105 AATGGCCCAACTTCGTAGTAATA 57.638 39.130 0.00 0.00 33.17 0.98
2673 2826 4.822685 TGGCCCAACTTCGTAGTAATAA 57.177 40.909 0.00 0.00 33.17 1.40
2674 2827 5.163281 TGGCCCAACTTCGTAGTAATAAA 57.837 39.130 0.00 0.00 33.17 1.40
2675 2828 5.747342 TGGCCCAACTTCGTAGTAATAAAT 58.253 37.500 0.00 0.00 33.17 1.40
2676 2829 6.887013 TGGCCCAACTTCGTAGTAATAAATA 58.113 36.000 0.00 0.00 33.17 1.40
2677 2830 7.511268 TGGCCCAACTTCGTAGTAATAAATAT 58.489 34.615 0.00 0.00 33.17 1.28
2678 2831 7.658575 TGGCCCAACTTCGTAGTAATAAATATC 59.341 37.037 0.00 0.00 33.17 1.63
2679 2832 7.876582 GGCCCAACTTCGTAGTAATAAATATCT 59.123 37.037 0.00 0.00 33.17 1.98
2680 2833 8.923683 GCCCAACTTCGTAGTAATAAATATCTC 58.076 37.037 0.00 0.00 33.17 2.75
2681 2834 9.420551 CCCAACTTCGTAGTAATAAATATCTCC 57.579 37.037 0.00 0.00 33.17 3.71
2685 2838 9.584008 ACTTCGTAGTAATAAATATCTCCTCCA 57.416 33.333 0.00 0.00 31.21 3.86
2687 2840 8.053026 TCGTAGTAATAAATATCTCCTCCAGC 57.947 38.462 0.00 0.00 0.00 4.85
2688 2841 7.122353 TCGTAGTAATAAATATCTCCTCCAGCC 59.878 40.741 0.00 0.00 0.00 4.85
2689 2842 7.093902 CGTAGTAATAAATATCTCCTCCAGCCA 60.094 40.741 0.00 0.00 0.00 4.75
2690 2843 7.821134 AGTAATAAATATCTCCTCCAGCCAT 57.179 36.000 0.00 0.00 0.00 4.40
2691 2844 7.856415 AGTAATAAATATCTCCTCCAGCCATC 58.144 38.462 0.00 0.00 0.00 3.51
2692 2845 6.708885 AATAAATATCTCCTCCAGCCATCA 57.291 37.500 0.00 0.00 0.00 3.07
2693 2846 6.708885 ATAAATATCTCCTCCAGCCATCAA 57.291 37.500 0.00 0.00 0.00 2.57
2694 2847 5.393068 AAATATCTCCTCCAGCCATCAAA 57.607 39.130 0.00 0.00 0.00 2.69
2695 2848 5.393068 AATATCTCCTCCAGCCATCAAAA 57.607 39.130 0.00 0.00 0.00 2.44
2696 2849 2.496899 TCTCCTCCAGCCATCAAAAC 57.503 50.000 0.00 0.00 0.00 2.43
2697 2850 1.988107 TCTCCTCCAGCCATCAAAACT 59.012 47.619 0.00 0.00 0.00 2.66
2698 2851 3.181329 TCTCCTCCAGCCATCAAAACTA 58.819 45.455 0.00 0.00 0.00 2.24
2699 2852 3.587061 TCTCCTCCAGCCATCAAAACTAA 59.413 43.478 0.00 0.00 0.00 2.24
2700 2853 3.944015 CTCCTCCAGCCATCAAAACTAAG 59.056 47.826 0.00 0.00 0.00 2.18
2701 2854 2.424956 CCTCCAGCCATCAAAACTAAGC 59.575 50.000 0.00 0.00 0.00 3.09
2702 2855 3.084039 CTCCAGCCATCAAAACTAAGCA 58.916 45.455 0.00 0.00 0.00 3.91
2703 2856 3.495331 TCCAGCCATCAAAACTAAGCAA 58.505 40.909 0.00 0.00 0.00 3.91
2704 2857 4.088634 TCCAGCCATCAAAACTAAGCAAT 58.911 39.130 0.00 0.00 0.00 3.56
2705 2858 5.260424 TCCAGCCATCAAAACTAAGCAATA 58.740 37.500 0.00 0.00 0.00 1.90
2706 2859 5.125417 TCCAGCCATCAAAACTAAGCAATAC 59.875 40.000 0.00 0.00 0.00 1.89
2707 2860 5.126061 CCAGCCATCAAAACTAAGCAATACT 59.874 40.000 0.00 0.00 0.00 2.12
2708 2861 6.350445 CCAGCCATCAAAACTAAGCAATACTT 60.350 38.462 0.00 0.00 42.76 2.24
2709 2862 6.749118 CAGCCATCAAAACTAAGCAATACTTC 59.251 38.462 0.00 0.00 39.97 3.01
2710 2863 6.434028 AGCCATCAAAACTAAGCAATACTTCA 59.566 34.615 0.00 0.00 39.97 3.02
2711 2864 7.039784 AGCCATCAAAACTAAGCAATACTTCAA 60.040 33.333 0.00 0.00 39.97 2.69
2712 2865 7.598493 GCCATCAAAACTAAGCAATACTTCAAA 59.402 33.333 0.00 0.00 39.97 2.69
2713 2866 8.915654 CCATCAAAACTAAGCAATACTTCAAAC 58.084 33.333 0.00 0.00 39.97 2.93
2714 2867 9.462174 CATCAAAACTAAGCAATACTTCAAACA 57.538 29.630 0.00 0.00 39.97 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.663815 GAGAGGGAGCGGTGAGGGA 62.664 68.421 0.00 0.00 0.00 4.20
206 218 4.814234 AGTAGTGCATGACGAACAGAAAAA 59.186 37.500 0.00 0.00 0.00 1.94
277 291 5.721960 TGCTTATCTACCTCTATTCCCCATC 59.278 44.000 0.00 0.00 0.00 3.51
313 332 5.915758 CCAGTATGAACTCGTATGAACTAGC 59.084 44.000 0.00 0.00 39.69 3.42
325 404 4.937620 TCTTGCATGAACCAGTATGAACTC 59.062 41.667 0.00 0.00 39.69 3.01
336 415 5.469421 CCTCTATTCTGATCTTGCATGAACC 59.531 44.000 6.36 2.83 0.00 3.62
366 445 2.544844 TCCCCTTCTACTTCATCCGT 57.455 50.000 0.00 0.00 0.00 4.69
385 464 3.075283 TGTGTACCTCCAATCCCACAATT 59.925 43.478 0.00 0.00 30.55 2.32
390 477 2.039746 CTGTTGTGTACCTCCAATCCCA 59.960 50.000 0.00 0.00 0.00 4.37
399 486 3.231818 AGCTAGTGTCTGTTGTGTACCT 58.768 45.455 0.00 0.00 0.00 3.08
455 549 1.003580 GAAGGTCAGCCACTTGATCCA 59.996 52.381 0.00 0.00 37.19 3.41
458 552 2.575279 AGATGAAGGTCAGCCACTTGAT 59.425 45.455 0.00 0.00 32.25 2.57
470 564 3.866651 CGATGGACAAGAAGATGAAGGT 58.133 45.455 0.00 0.00 0.00 3.50
904 1029 2.222027 GCTAGTGACTGCACCAAGTTT 58.778 47.619 0.00 0.00 46.32 2.66
994 1120 1.617850 CCTCTCTATCGCCATGAGCTT 59.382 52.381 0.00 0.00 40.39 3.74
1008 1134 4.017037 TCACTATCAACCTTCCTCCTCTCT 60.017 45.833 0.00 0.00 0.00 3.10
1136 1266 7.380602 GCACAACATAGAATTCATGGCTTATTC 59.619 37.037 8.44 0.00 0.00 1.75
1150 1280 2.637382 TGGAGTCAGGCACAACATAGAA 59.363 45.455 0.00 0.00 0.00 2.10
1177 1307 0.102120 CTCTCCTCGATCTGCACACC 59.898 60.000 0.00 0.00 0.00 4.16
1227 1357 1.108727 CCTTGCCCTTGCTGTCAACA 61.109 55.000 0.00 0.00 38.71 3.33
1235 1365 2.747855 CCGACTCCTTGCCCTTGC 60.748 66.667 0.00 0.00 38.26 4.01
1258 1388 3.443045 CACCACCTCGGGCATTGC 61.443 66.667 0.00 0.00 40.22 3.56
1397 1527 1.736681 GGATGAGCTTGCAGAAGTGAC 59.263 52.381 0.00 0.00 0.00 3.67
1411 1541 0.252479 AGCTCTGGTGCAAGGATGAG 59.748 55.000 0.00 0.00 34.99 2.90
1450 1581 2.297701 GAAGTGCTTGGTGAAGTCCAA 58.702 47.619 0.00 0.00 44.03 3.53
1512 1643 1.352083 CAGTCACCCTCCAGGAGAAA 58.648 55.000 19.21 0.00 36.94 2.52
1514 1645 0.542938 CACAGTCACCCTCCAGGAGA 60.543 60.000 19.21 0.00 39.89 3.71
1530 1661 0.250252 TGCCGTTCATCAGCTTCACA 60.250 50.000 0.00 0.00 0.00 3.58
1604 1737 4.002982 GCTTGAACATCACCATGTAGACA 58.997 43.478 0.00 0.00 42.89 3.41
1693 1826 0.878961 GTCTTCGTTGTGCTTCCCGT 60.879 55.000 0.00 0.00 0.00 5.28
1711 1844 1.664321 CTAGTACCTGGCGGCGAAGT 61.664 60.000 12.98 3.70 0.00 3.01
1775 1917 4.481930 TCAACCAGTTCAACGCATAAAG 57.518 40.909 0.00 0.00 0.00 1.85
1894 2043 3.876914 CACACTTCGGCATAACCATGTAT 59.123 43.478 0.00 0.00 39.03 2.29
1904 2053 1.877443 GTTACCAACACACTTCGGCAT 59.123 47.619 0.00 0.00 0.00 4.40
2008 2158 1.074775 CCTGGTGTTTGGCTGCCTA 59.925 57.895 21.03 9.91 0.00 3.93
2014 2165 2.290705 ACCATACTACCTGGTGTTTGGC 60.291 50.000 24.36 0.00 45.27 4.52
2069 2221 2.481795 GCACCATCTGCAAGTTGTTTGT 60.482 45.455 4.48 0.00 46.29 2.83
2116 2268 3.769300 TGCATAGCCTTCTCAACTCAGTA 59.231 43.478 0.00 0.00 0.00 2.74
2191 2344 2.171003 GCTTCCCCCATTATACATGCC 58.829 52.381 0.00 0.00 0.00 4.40
2199 2352 0.396974 GCATGGTGCTTCCCCCATTA 60.397 55.000 0.00 0.00 39.44 1.90
2215 2368 2.038329 ATGTTGGGGCAGCAGCAT 59.962 55.556 2.65 0.00 44.61 3.79
2216 2369 2.677524 GATGTTGGGGCAGCAGCA 60.678 61.111 2.65 0.00 44.61 4.41
2239 2392 4.277174 CGATGCTTCATCTACTGTACTCCT 59.723 45.833 5.42 0.00 38.59 3.69
2262 2415 2.424956 GGACCACATCAAGAATGAAGCC 59.575 50.000 0.00 0.00 39.49 4.35
2263 2416 2.096496 CGGACCACATCAAGAATGAAGC 59.904 50.000 0.00 0.00 39.49 3.86
2282 2435 3.932483 GGCCCGGGTATGGTACGG 61.932 72.222 24.63 0.00 46.79 4.02
2283 2436 2.733669 TTGGCCCGGGTATGGTACG 61.734 63.158 24.63 0.00 0.00 3.67
2284 2437 1.153107 GTTGGCCCGGGTATGGTAC 60.153 63.158 24.63 8.38 0.00 3.34
2285 2438 2.376987 GGTTGGCCCGGGTATGGTA 61.377 63.158 24.63 0.00 0.00 3.25
2286 2439 3.735097 GGTTGGCCCGGGTATGGT 61.735 66.667 24.63 0.00 0.00 3.55
2287 2440 3.416880 AGGTTGGCCCGGGTATGG 61.417 66.667 24.63 0.00 38.74 2.74
2288 2441 2.124320 CAGGTTGGCCCGGGTATG 60.124 66.667 24.63 8.29 38.74 2.39
2289 2442 3.416880 CCAGGTTGGCCCGGGTAT 61.417 66.667 24.63 0.00 43.16 2.73
2293 2446 2.440247 GAATCCAGGTTGGCCCGG 60.440 66.667 0.00 0.00 37.47 5.73
2294 2447 2.824041 CGAATCCAGGTTGGCCCG 60.824 66.667 0.00 0.00 37.47 6.13
2295 2448 2.440247 CCGAATCCAGGTTGGCCC 60.440 66.667 0.00 0.00 37.47 5.80
2296 2449 3.140814 GCCGAATCCAGGTTGGCC 61.141 66.667 0.00 0.00 39.83 5.36
2297 2450 3.140814 GGCCGAATCCAGGTTGGC 61.141 66.667 0.07 0.07 44.98 4.52
2298 2451 2.046285 GTGGCCGAATCCAGGTTGG 61.046 63.158 0.00 0.00 36.67 3.77
2299 2452 2.398554 CGTGGCCGAATCCAGGTTG 61.399 63.158 0.00 0.00 36.67 3.77
2300 2453 2.046314 CGTGGCCGAATCCAGGTT 60.046 61.111 0.00 0.00 36.67 3.50
2301 2454 4.778143 GCGTGGCCGAATCCAGGT 62.778 66.667 0.00 0.00 42.35 4.00
2329 2482 3.142838 CAAAGATGCCAGGGCCGG 61.143 66.667 8.02 9.66 41.09 6.13
2330 2483 2.045045 TCAAAGATGCCAGGGCCG 60.045 61.111 8.02 0.00 41.09 6.13
2331 2484 1.755783 CCTCAAAGATGCCAGGGCC 60.756 63.158 8.02 0.00 41.09 5.80
2332 2485 2.421399 GCCTCAAAGATGCCAGGGC 61.421 63.158 2.62 2.62 42.35 5.19
2333 2486 1.755783 GGCCTCAAAGATGCCAGGG 60.756 63.158 8.20 0.00 41.78 4.45
2334 2487 1.755783 GGGCCTCAAAGATGCCAGG 60.756 63.158 13.90 0.00 43.50 4.45
2335 2488 0.548031 TAGGGCCTCAAAGATGCCAG 59.452 55.000 10.74 0.00 43.50 4.85
2336 2489 0.548031 CTAGGGCCTCAAAGATGCCA 59.452 55.000 10.74 0.00 43.50 4.92
2337 2490 0.548510 ACTAGGGCCTCAAAGATGCC 59.451 55.000 10.74 4.93 41.52 4.40
2338 2491 1.673168 CACTAGGGCCTCAAAGATGC 58.327 55.000 10.74 0.00 0.00 3.91
2339 2492 1.673168 GCACTAGGGCCTCAAAGATG 58.327 55.000 10.74 4.77 0.00 2.90
2340 2493 0.179000 CGCACTAGGGCCTCAAAGAT 59.821 55.000 10.74 0.00 0.00 2.40
2341 2494 0.902984 TCGCACTAGGGCCTCAAAGA 60.903 55.000 10.74 1.41 0.00 2.52
2342 2495 0.741221 GTCGCACTAGGGCCTCAAAG 60.741 60.000 10.74 4.38 0.00 2.77
2343 2496 1.295423 GTCGCACTAGGGCCTCAAA 59.705 57.895 10.74 0.00 0.00 2.69
2344 2497 2.656069 GGTCGCACTAGGGCCTCAA 61.656 63.158 10.74 0.00 0.00 3.02
2345 2498 3.075005 GGTCGCACTAGGGCCTCA 61.075 66.667 10.74 0.00 0.00 3.86
2346 2499 3.851128 GGGTCGCACTAGGGCCTC 61.851 72.222 10.74 4.35 0.00 4.70
2350 2503 2.440796 TACCGGGTCGCACTAGGG 60.441 66.667 6.32 0.00 0.00 3.53
2351 2504 2.803479 GTACCGGGTCGCACTAGG 59.197 66.667 6.32 0.00 0.00 3.02
2352 2505 1.442526 ATCGTACCGGGTCGCACTAG 61.443 60.000 6.32 0.00 0.00 2.57
2353 2506 1.451927 ATCGTACCGGGTCGCACTA 60.452 57.895 6.32 0.00 0.00 2.74
2354 2507 2.753043 ATCGTACCGGGTCGCACT 60.753 61.111 6.32 0.00 0.00 4.40
2355 2508 2.581409 CATCGTACCGGGTCGCAC 60.581 66.667 6.32 0.00 0.00 5.34
2356 2509 3.829044 CCATCGTACCGGGTCGCA 61.829 66.667 6.32 1.06 0.00 5.10
2357 2510 4.580551 CCCATCGTACCGGGTCGC 62.581 72.222 6.32 0.00 37.70 5.19
2358 2511 4.580551 GCCCATCGTACCGGGTCG 62.581 72.222 6.32 10.52 45.07 4.79
2359 2512 4.231439 GGCCCATCGTACCGGGTC 62.231 72.222 6.32 5.23 45.07 4.46
2362 2515 3.530910 GATGGGCCCATCGTACCGG 62.531 68.421 41.88 0.00 42.55 5.28
2363 2516 2.030562 GATGGGCCCATCGTACCG 59.969 66.667 41.88 0.00 42.55 4.02
2370 2523 3.983410 ACTAGAATAACTGATGGGCCCAT 59.017 43.478 38.12 38.12 39.69 4.00
2371 2524 3.393687 ACTAGAATAACTGATGGGCCCA 58.606 45.455 30.92 30.92 0.00 5.36
2372 2525 4.020128 CCTACTAGAATAACTGATGGGCCC 60.020 50.000 17.59 17.59 0.00 5.80
2373 2526 4.020128 CCCTACTAGAATAACTGATGGGCC 60.020 50.000 0.00 0.00 0.00 5.80
2374 2527 4.593634 ACCCTACTAGAATAACTGATGGGC 59.406 45.833 0.00 0.00 34.59 5.36
2375 2528 6.749036 AACCCTACTAGAATAACTGATGGG 57.251 41.667 0.00 0.00 37.08 4.00
2378 2531 9.813446 CGTTTTAACCCTACTAGAATAACTGAT 57.187 33.333 0.00 0.00 0.00 2.90
2379 2532 8.806146 ACGTTTTAACCCTACTAGAATAACTGA 58.194 33.333 0.00 0.00 0.00 3.41
2380 2533 8.866956 CACGTTTTAACCCTACTAGAATAACTG 58.133 37.037 0.00 0.00 0.00 3.16
2381 2534 7.547019 GCACGTTTTAACCCTACTAGAATAACT 59.453 37.037 0.00 0.00 0.00 2.24
2382 2535 7.201556 GGCACGTTTTAACCCTACTAGAATAAC 60.202 40.741 0.00 0.00 0.00 1.89
2383 2536 6.818142 GGCACGTTTTAACCCTACTAGAATAA 59.182 38.462 0.00 0.00 0.00 1.40
2384 2537 6.155049 AGGCACGTTTTAACCCTACTAGAATA 59.845 38.462 0.00 0.00 0.00 1.75
2385 2538 5.046087 AGGCACGTTTTAACCCTACTAGAAT 60.046 40.000 0.00 0.00 0.00 2.40
2386 2539 4.284234 AGGCACGTTTTAACCCTACTAGAA 59.716 41.667 0.00 0.00 0.00 2.10
2387 2540 3.834231 AGGCACGTTTTAACCCTACTAGA 59.166 43.478 0.00 0.00 0.00 2.43
2388 2541 4.198028 AGGCACGTTTTAACCCTACTAG 57.802 45.455 0.00 0.00 0.00 2.57
2389 2542 4.381932 GCTAGGCACGTTTTAACCCTACTA 60.382 45.833 0.00 0.00 0.00 1.82
2390 2543 3.618263 GCTAGGCACGTTTTAACCCTACT 60.618 47.826 0.00 0.00 0.00 2.57
2391 2544 2.674852 GCTAGGCACGTTTTAACCCTAC 59.325 50.000 0.00 0.00 0.00 3.18
2392 2545 2.568509 AGCTAGGCACGTTTTAACCCTA 59.431 45.455 0.00 0.00 0.00 3.53
2393 2546 1.350019 AGCTAGGCACGTTTTAACCCT 59.650 47.619 0.00 0.00 0.00 4.34
2394 2547 1.817357 AGCTAGGCACGTTTTAACCC 58.183 50.000 0.00 0.00 0.00 4.11
2395 2548 5.111293 TGTATAGCTAGGCACGTTTTAACC 58.889 41.667 0.00 0.00 0.00 2.85
2396 2549 6.651755 TTGTATAGCTAGGCACGTTTTAAC 57.348 37.500 0.00 0.00 0.00 2.01
2397 2550 6.238266 GCATTGTATAGCTAGGCACGTTTTAA 60.238 38.462 0.00 0.00 30.55 1.52
2398 2551 5.235616 GCATTGTATAGCTAGGCACGTTTTA 59.764 40.000 0.00 0.00 30.55 1.52
2399 2552 4.035208 GCATTGTATAGCTAGGCACGTTTT 59.965 41.667 0.00 0.00 30.55 2.43
2400 2553 3.560068 GCATTGTATAGCTAGGCACGTTT 59.440 43.478 0.00 0.00 30.55 3.60
2401 2554 3.131396 GCATTGTATAGCTAGGCACGTT 58.869 45.455 0.00 0.00 30.55 3.99
2402 2555 2.365617 AGCATTGTATAGCTAGGCACGT 59.634 45.455 0.00 0.00 39.78 4.49
2403 2556 3.032017 AGCATTGTATAGCTAGGCACG 57.968 47.619 0.00 0.00 39.78 5.34
2404 2557 8.607459 CATAATAAGCATTGTATAGCTAGGCAC 58.393 37.037 0.00 0.00 40.90 5.01
2405 2558 8.539544 TCATAATAAGCATTGTATAGCTAGGCA 58.460 33.333 0.00 0.00 40.90 4.75
2406 2559 8.948631 TCATAATAAGCATTGTATAGCTAGGC 57.051 34.615 0.00 0.00 40.90 3.93
2475 2628 9.396022 CCCTGATGTACTAAGTTCATATTTGTT 57.604 33.333 0.00 0.00 0.00 2.83
2476 2629 8.768397 TCCCTGATGTACTAAGTTCATATTTGT 58.232 33.333 0.00 0.00 0.00 2.83
2477 2630 9.784531 ATCCCTGATGTACTAAGTTCATATTTG 57.215 33.333 0.00 0.00 0.00 2.32
2481 2634 8.531982 GCATATCCCTGATGTACTAAGTTCATA 58.468 37.037 0.00 0.00 0.00 2.15
2482 2635 7.390027 GCATATCCCTGATGTACTAAGTTCAT 58.610 38.462 0.00 0.00 0.00 2.57
2483 2636 6.516693 CGCATATCCCTGATGTACTAAGTTCA 60.517 42.308 0.00 0.00 0.00 3.18
2484 2637 5.864474 CGCATATCCCTGATGTACTAAGTTC 59.136 44.000 0.00 0.00 0.00 3.01
2485 2638 5.538813 TCGCATATCCCTGATGTACTAAGTT 59.461 40.000 0.00 0.00 0.00 2.66
2486 2639 5.077564 TCGCATATCCCTGATGTACTAAGT 58.922 41.667 0.00 0.00 0.00 2.24
2487 2640 5.644977 TCGCATATCCCTGATGTACTAAG 57.355 43.478 0.00 0.00 0.00 2.18
2488 2641 7.898014 ATATCGCATATCCCTGATGTACTAA 57.102 36.000 0.00 0.00 0.00 2.24
2489 2642 7.665974 CCTATATCGCATATCCCTGATGTACTA 59.334 40.741 0.00 0.00 0.00 1.82
2490 2643 6.491745 CCTATATCGCATATCCCTGATGTACT 59.508 42.308 0.00 0.00 0.00 2.73
2491 2644 6.490381 TCCTATATCGCATATCCCTGATGTAC 59.510 42.308 0.00 0.00 0.00 2.90
2492 2645 6.610830 TCCTATATCGCATATCCCTGATGTA 58.389 40.000 0.00 0.00 0.00 2.29
2493 2646 5.458595 TCCTATATCGCATATCCCTGATGT 58.541 41.667 0.00 0.00 0.00 3.06
2494 2647 6.602410 ATCCTATATCGCATATCCCTGATG 57.398 41.667 0.00 0.00 0.00 3.07
2495 2648 7.241628 TGTATCCTATATCGCATATCCCTGAT 58.758 38.462 0.00 0.00 0.00 2.90
2496 2649 6.610830 TGTATCCTATATCGCATATCCCTGA 58.389 40.000 0.00 0.00 0.00 3.86
2497 2650 6.901081 TGTATCCTATATCGCATATCCCTG 57.099 41.667 0.00 0.00 0.00 4.45
2498 2651 6.015010 GCTTGTATCCTATATCGCATATCCCT 60.015 42.308 0.00 0.00 0.00 4.20
2499 2652 6.015010 AGCTTGTATCCTATATCGCATATCCC 60.015 42.308 0.00 0.00 0.00 3.85
2500 2653 6.987386 AGCTTGTATCCTATATCGCATATCC 58.013 40.000 0.00 0.00 0.00 2.59
2501 2654 7.652727 TGAGCTTGTATCCTATATCGCATATC 58.347 38.462 0.00 0.00 0.00 1.63
2502 2655 7.588497 TGAGCTTGTATCCTATATCGCATAT 57.412 36.000 0.00 0.00 0.00 1.78
2503 2656 7.093945 TGTTGAGCTTGTATCCTATATCGCATA 60.094 37.037 0.00 0.00 0.00 3.14
2504 2657 5.921962 TGAGCTTGTATCCTATATCGCAT 57.078 39.130 0.00 0.00 0.00 4.73
2505 2658 5.010617 TGTTGAGCTTGTATCCTATATCGCA 59.989 40.000 0.00 0.00 0.00 5.10
2506 2659 5.470368 TGTTGAGCTTGTATCCTATATCGC 58.530 41.667 0.00 0.00 0.00 4.58
2507 2660 6.366332 GGTTGTTGAGCTTGTATCCTATATCG 59.634 42.308 0.00 0.00 0.00 2.92
2508 2661 6.651225 GGGTTGTTGAGCTTGTATCCTATATC 59.349 42.308 0.00 0.00 0.00 1.63
2509 2662 6.101150 TGGGTTGTTGAGCTTGTATCCTATAT 59.899 38.462 0.00 0.00 0.00 0.86
2510 2663 5.427157 TGGGTTGTTGAGCTTGTATCCTATA 59.573 40.000 0.00 0.00 0.00 1.31
2511 2664 4.227300 TGGGTTGTTGAGCTTGTATCCTAT 59.773 41.667 0.00 0.00 0.00 2.57
2512 2665 3.585289 TGGGTTGTTGAGCTTGTATCCTA 59.415 43.478 0.00 0.00 0.00 2.94
2513 2666 2.375174 TGGGTTGTTGAGCTTGTATCCT 59.625 45.455 0.00 0.00 0.00 3.24
2514 2667 2.488153 GTGGGTTGTTGAGCTTGTATCC 59.512 50.000 0.00 0.00 0.00 2.59
2515 2668 3.146066 TGTGGGTTGTTGAGCTTGTATC 58.854 45.455 0.00 0.00 0.00 2.24
2516 2669 3.222173 TGTGGGTTGTTGAGCTTGTAT 57.778 42.857 0.00 0.00 0.00 2.29
2517 2670 2.719531 TGTGGGTTGTTGAGCTTGTA 57.280 45.000 0.00 0.00 0.00 2.41
2518 2671 1.846007 TTGTGGGTTGTTGAGCTTGT 58.154 45.000 0.00 0.00 0.00 3.16
2519 2672 2.957491 TTTGTGGGTTGTTGAGCTTG 57.043 45.000 0.00 0.00 0.00 4.01
2520 2673 2.831526 ACTTTTGTGGGTTGTTGAGCTT 59.168 40.909 0.00 0.00 0.00 3.74
2521 2674 2.427095 GACTTTTGTGGGTTGTTGAGCT 59.573 45.455 0.00 0.00 0.00 4.09
2522 2675 2.794631 CGACTTTTGTGGGTTGTTGAGC 60.795 50.000 0.00 0.00 0.00 4.26
2523 2676 2.680841 TCGACTTTTGTGGGTTGTTGAG 59.319 45.455 0.00 0.00 0.00 3.02
2524 2677 2.712709 TCGACTTTTGTGGGTTGTTGA 58.287 42.857 0.00 0.00 0.00 3.18
2525 2678 3.708563 ATCGACTTTTGTGGGTTGTTG 57.291 42.857 0.00 0.00 0.00 3.33
2526 2679 4.729227 AAATCGACTTTTGTGGGTTGTT 57.271 36.364 0.00 0.00 31.82 2.83
2527 2680 4.729227 AAAATCGACTTTTGTGGGTTGT 57.271 36.364 0.00 0.00 35.71 3.32
2550 2703 9.726438 CTCCTTCCTTGTAATTTCTTTTCTCTA 57.274 33.333 0.00 0.00 0.00 2.43
2551 2704 8.440771 TCTCCTTCCTTGTAATTTCTTTTCTCT 58.559 33.333 0.00 0.00 0.00 3.10
2552 2705 8.622948 TCTCCTTCCTTGTAATTTCTTTTCTC 57.377 34.615 0.00 0.00 0.00 2.87
2553 2706 8.440771 TCTCTCCTTCCTTGTAATTTCTTTTCT 58.559 33.333 0.00 0.00 0.00 2.52
2554 2707 8.622948 TCTCTCCTTCCTTGTAATTTCTTTTC 57.377 34.615 0.00 0.00 0.00 2.29
2555 2708 8.996651 TTCTCTCCTTCCTTGTAATTTCTTTT 57.003 30.769 0.00 0.00 0.00 2.27
2556 2709 8.996651 TTTCTCTCCTTCCTTGTAATTTCTTT 57.003 30.769 0.00 0.00 0.00 2.52
2557 2710 8.221251 ACTTTCTCTCCTTCCTTGTAATTTCTT 58.779 33.333 0.00 0.00 0.00 2.52
2558 2711 7.663493 CACTTTCTCTCCTTCCTTGTAATTTCT 59.337 37.037 0.00 0.00 0.00 2.52
2559 2712 7.574030 GCACTTTCTCTCCTTCCTTGTAATTTC 60.574 40.741 0.00 0.00 0.00 2.17
2560 2713 6.207614 GCACTTTCTCTCCTTCCTTGTAATTT 59.792 38.462 0.00 0.00 0.00 1.82
2561 2714 5.707764 GCACTTTCTCTCCTTCCTTGTAATT 59.292 40.000 0.00 0.00 0.00 1.40
2562 2715 5.249420 GCACTTTCTCTCCTTCCTTGTAAT 58.751 41.667 0.00 0.00 0.00 1.89
2563 2716 4.642429 GCACTTTCTCTCCTTCCTTGTAA 58.358 43.478 0.00 0.00 0.00 2.41
2564 2717 3.306088 CGCACTTTCTCTCCTTCCTTGTA 60.306 47.826 0.00 0.00 0.00 2.41
2565 2718 2.548920 CGCACTTTCTCTCCTTCCTTGT 60.549 50.000 0.00 0.00 0.00 3.16
2566 2719 2.072298 CGCACTTTCTCTCCTTCCTTG 58.928 52.381 0.00 0.00 0.00 3.61
2567 2720 1.694696 ACGCACTTTCTCTCCTTCCTT 59.305 47.619 0.00 0.00 0.00 3.36
2568 2721 1.001406 CACGCACTTTCTCTCCTTCCT 59.999 52.381 0.00 0.00 0.00 3.36
2569 2722 1.000955 TCACGCACTTTCTCTCCTTCC 59.999 52.381 0.00 0.00 0.00 3.46
2570 2723 2.440539 TCACGCACTTTCTCTCCTTC 57.559 50.000 0.00 0.00 0.00 3.46
2571 2724 2.484889 GTTCACGCACTTTCTCTCCTT 58.515 47.619 0.00 0.00 0.00 3.36
2572 2725 1.270358 GGTTCACGCACTTTCTCTCCT 60.270 52.381 0.00 0.00 0.00 3.69
2573 2726 1.149148 GGTTCACGCACTTTCTCTCC 58.851 55.000 0.00 0.00 0.00 3.71
2574 2727 1.149148 GGGTTCACGCACTTTCTCTC 58.851 55.000 0.00 0.00 0.00 3.20
2575 2728 0.759346 AGGGTTCACGCACTTTCTCT 59.241 50.000 0.00 0.00 0.00 3.10
2576 2729 1.149148 GAGGGTTCACGCACTTTCTC 58.851 55.000 0.00 0.00 0.00 2.87
2577 2730 0.759346 AGAGGGTTCACGCACTTTCT 59.241 50.000 0.00 0.00 0.00 2.52
2578 2731 0.868406 CAGAGGGTTCACGCACTTTC 59.132 55.000 0.00 0.00 0.00 2.62
2579 2732 0.468226 TCAGAGGGTTCACGCACTTT 59.532 50.000 0.00 0.00 0.00 2.66
2580 2733 0.034059 CTCAGAGGGTTCACGCACTT 59.966 55.000 0.00 0.00 0.00 3.16
2581 2734 1.115930 ACTCAGAGGGTTCACGCACT 61.116 55.000 1.53 0.00 0.00 4.40
2582 2735 0.667792 GACTCAGAGGGTTCACGCAC 60.668 60.000 1.53 0.00 0.00 5.34
2583 2736 1.666011 GACTCAGAGGGTTCACGCA 59.334 57.895 1.53 0.00 0.00 5.24
2584 2737 1.079750 GGACTCAGAGGGTTCACGC 60.080 63.158 1.53 0.00 0.00 5.34
2585 2738 0.969894 AAGGACTCAGAGGGTTCACG 59.030 55.000 1.53 0.00 0.00 4.35
2586 2739 4.027437 AGATAAGGACTCAGAGGGTTCAC 58.973 47.826 1.53 0.00 0.00 3.18
2587 2740 4.282496 GAGATAAGGACTCAGAGGGTTCA 58.718 47.826 1.53 0.00 34.87 3.18
2588 2741 3.639561 GGAGATAAGGACTCAGAGGGTTC 59.360 52.174 1.53 0.00 36.26 3.62
2589 2742 3.273618 AGGAGATAAGGACTCAGAGGGTT 59.726 47.826 1.53 0.00 36.26 4.11
2590 2743 2.862597 AGGAGATAAGGACTCAGAGGGT 59.137 50.000 1.53 0.00 36.26 4.34
2591 2744 3.117322 TCAGGAGATAAGGACTCAGAGGG 60.117 52.174 1.53 0.00 36.26 4.30
2592 2745 4.144297 CTCAGGAGATAAGGACTCAGAGG 58.856 52.174 1.53 0.00 35.97 3.69
2593 2746 3.569701 GCTCAGGAGATAAGGACTCAGAG 59.430 52.174 0.00 0.00 39.13 3.35
2594 2747 3.204158 AGCTCAGGAGATAAGGACTCAGA 59.796 47.826 0.00 0.00 36.26 3.27
2595 2748 3.565307 AGCTCAGGAGATAAGGACTCAG 58.435 50.000 0.00 0.00 36.26 3.35
2596 2749 3.678965 AGCTCAGGAGATAAGGACTCA 57.321 47.619 0.00 0.00 36.26 3.41
2597 2750 4.499019 CGAAAGCTCAGGAGATAAGGACTC 60.499 50.000 0.00 0.00 0.00 3.36
2598 2751 3.383185 CGAAAGCTCAGGAGATAAGGACT 59.617 47.826 0.00 0.00 0.00 3.85
2599 2752 3.381908 TCGAAAGCTCAGGAGATAAGGAC 59.618 47.826 0.00 0.00 0.00 3.85
2600 2753 3.632333 TCGAAAGCTCAGGAGATAAGGA 58.368 45.455 0.00 0.00 0.00 3.36
2601 2754 4.392921 TTCGAAAGCTCAGGAGATAAGG 57.607 45.455 0.00 0.00 0.00 2.69
2602 2755 8.600449 ATTTATTCGAAAGCTCAGGAGATAAG 57.400 34.615 0.00 0.00 0.00 1.73
2603 2756 8.964476 AATTTATTCGAAAGCTCAGGAGATAA 57.036 30.769 0.00 0.00 0.00 1.75
2606 2759 9.477484 GTATAATTTATTCGAAAGCTCAGGAGA 57.523 33.333 0.00 0.00 0.00 3.71
2607 2760 9.482627 AGTATAATTTATTCGAAAGCTCAGGAG 57.517 33.333 0.00 0.00 0.00 3.69
2608 2761 9.477484 GAGTATAATTTATTCGAAAGCTCAGGA 57.523 33.333 0.00 0.00 0.00 3.86
2609 2762 8.713271 GGAGTATAATTTATTCGAAAGCTCAGG 58.287 37.037 0.00 0.00 0.00 3.86
2610 2763 8.713271 GGGAGTATAATTTATTCGAAAGCTCAG 58.287 37.037 0.00 0.00 0.00 3.35
2611 2764 8.429641 AGGGAGTATAATTTATTCGAAAGCTCA 58.570 33.333 0.00 0.00 0.00 4.26
2612 2765 8.834749 AGGGAGTATAATTTATTCGAAAGCTC 57.165 34.615 0.00 0.00 0.00 4.09
2613 2766 7.878644 GGAGGGAGTATAATTTATTCGAAAGCT 59.121 37.037 0.00 0.00 0.00 3.74
2614 2767 7.660208 TGGAGGGAGTATAATTTATTCGAAAGC 59.340 37.037 0.00 0.00 0.00 3.51
2615 2768 9.726438 ATGGAGGGAGTATAATTTATTCGAAAG 57.274 33.333 0.00 0.00 0.00 2.62
2616 2769 9.720769 GATGGAGGGAGTATAATTTATTCGAAA 57.279 33.333 0.00 0.00 0.00 3.46
2617 2770 8.319146 GGATGGAGGGAGTATAATTTATTCGAA 58.681 37.037 0.00 0.00 0.00 3.71
2618 2771 7.456585 TGGATGGAGGGAGTATAATTTATTCGA 59.543 37.037 0.00 0.00 0.00 3.71
2619 2772 7.620880 TGGATGGAGGGAGTATAATTTATTCG 58.379 38.462 0.00 0.00 0.00 3.34
2620 2773 9.807921 TTTGGATGGAGGGAGTATAATTTATTC 57.192 33.333 0.00 0.00 0.00 1.75
2627 2780 9.586732 CATTATTTTTGGATGGAGGGAGTATAA 57.413 33.333 0.00 0.00 0.00 0.98
2628 2781 8.170061 CCATTATTTTTGGATGGAGGGAGTATA 58.830 37.037 0.00 0.00 42.31 1.47
2629 2782 7.012607 CCATTATTTTTGGATGGAGGGAGTAT 58.987 38.462 0.00 0.00 42.31 2.12
2630 2783 6.372931 CCATTATTTTTGGATGGAGGGAGTA 58.627 40.000 0.00 0.00 42.31 2.59
2631 2784 5.211201 CCATTATTTTTGGATGGAGGGAGT 58.789 41.667 0.00 0.00 42.31 3.85
2632 2785 4.039609 GCCATTATTTTTGGATGGAGGGAG 59.960 45.833 5.82 0.00 42.31 4.30
2633 2786 3.966665 GCCATTATTTTTGGATGGAGGGA 59.033 43.478 5.82 0.00 42.31 4.20
2634 2787 3.071457 GGCCATTATTTTTGGATGGAGGG 59.929 47.826 0.00 0.00 42.31 4.30
2635 2788 3.071457 GGGCCATTATTTTTGGATGGAGG 59.929 47.826 4.39 0.00 42.31 4.30
2636 2789 3.710677 TGGGCCATTATTTTTGGATGGAG 59.289 43.478 0.00 0.00 42.31 3.86
2637 2790 3.729108 TGGGCCATTATTTTTGGATGGA 58.271 40.909 0.00 0.00 42.31 3.41
2638 2791 4.080413 AGTTGGGCCATTATTTTTGGATGG 60.080 41.667 7.26 0.00 42.54 3.51
2639 2792 5.101648 AGTTGGGCCATTATTTTTGGATG 57.898 39.130 7.26 0.00 36.26 3.51
2640 2793 5.626578 CGAAGTTGGGCCATTATTTTTGGAT 60.627 40.000 7.26 0.00 36.26 3.41
2641 2794 4.322349 CGAAGTTGGGCCATTATTTTTGGA 60.322 41.667 7.26 0.00 36.26 3.53
2642 2795 3.932089 CGAAGTTGGGCCATTATTTTTGG 59.068 43.478 7.26 0.00 37.31 3.28
2643 2796 4.565022 ACGAAGTTGGGCCATTATTTTTG 58.435 39.130 7.26 4.52 37.78 2.44
2644 2797 4.882842 ACGAAGTTGGGCCATTATTTTT 57.117 36.364 7.26 0.00 37.78 1.94
2645 2798 5.014202 ACTACGAAGTTGGGCCATTATTTT 58.986 37.500 7.26 0.00 37.78 1.82
2646 2799 4.595986 ACTACGAAGTTGGGCCATTATTT 58.404 39.130 7.26 0.00 37.78 1.40
2647 2800 4.230745 ACTACGAAGTTGGGCCATTATT 57.769 40.909 7.26 1.99 37.78 1.40
2648 2801 3.926058 ACTACGAAGTTGGGCCATTAT 57.074 42.857 7.26 0.00 37.78 1.28
2649 2802 4.822685 TTACTACGAAGTTGGGCCATTA 57.177 40.909 7.26 0.00 37.78 1.90
2650 2803 3.706600 TTACTACGAAGTTGGGCCATT 57.293 42.857 7.26 0.00 37.78 3.16
2651 2804 3.926058 ATTACTACGAAGTTGGGCCAT 57.074 42.857 7.26 0.00 37.78 4.40
2652 2805 4.822685 TTATTACTACGAAGTTGGGCCA 57.177 40.909 0.00 0.00 37.78 5.36
2653 2806 7.876582 AGATATTTATTACTACGAAGTTGGGCC 59.123 37.037 0.00 0.00 37.78 5.80
2654 2807 8.828688 AGATATTTATTACTACGAAGTTGGGC 57.171 34.615 0.00 0.00 37.78 5.36
2655 2808 9.420551 GGAGATATTTATTACTACGAAGTTGGG 57.579 37.037 0.00 0.00 37.78 4.12
2661 2814 8.521176 GCTGGAGGAGATATTTATTACTACGAA 58.479 37.037 0.00 0.00 0.00 3.85
2662 2815 7.122353 GGCTGGAGGAGATATTTATTACTACGA 59.878 40.741 0.00 0.00 0.00 3.43
2663 2816 7.093902 TGGCTGGAGGAGATATTTATTACTACG 60.094 40.741 0.00 0.00 0.00 3.51
2664 2817 8.135382 TGGCTGGAGGAGATATTTATTACTAC 57.865 38.462 0.00 0.00 0.00 2.73
2665 2818 8.917414 ATGGCTGGAGGAGATATTTATTACTA 57.083 34.615 0.00 0.00 0.00 1.82
2666 2819 7.459125 TGATGGCTGGAGGAGATATTTATTACT 59.541 37.037 0.00 0.00 0.00 2.24
2667 2820 7.624549 TGATGGCTGGAGGAGATATTTATTAC 58.375 38.462 0.00 0.00 0.00 1.89
2668 2821 7.813087 TGATGGCTGGAGGAGATATTTATTA 57.187 36.000 0.00 0.00 0.00 0.98
2669 2822 6.708885 TGATGGCTGGAGGAGATATTTATT 57.291 37.500 0.00 0.00 0.00 1.40
2670 2823 6.708885 TTGATGGCTGGAGGAGATATTTAT 57.291 37.500 0.00 0.00 0.00 1.40
2671 2824 6.514012 TTTGATGGCTGGAGGAGATATTTA 57.486 37.500 0.00 0.00 0.00 1.40
2672 2825 5.393068 TTTGATGGCTGGAGGAGATATTT 57.607 39.130 0.00 0.00 0.00 1.40
2673 2826 5.103771 AGTTTTGATGGCTGGAGGAGATATT 60.104 40.000 0.00 0.00 0.00 1.28
2674 2827 4.414846 AGTTTTGATGGCTGGAGGAGATAT 59.585 41.667 0.00 0.00 0.00 1.63
2675 2828 3.782523 AGTTTTGATGGCTGGAGGAGATA 59.217 43.478 0.00 0.00 0.00 1.98
2676 2829 2.579860 AGTTTTGATGGCTGGAGGAGAT 59.420 45.455 0.00 0.00 0.00 2.75
2677 2830 1.988107 AGTTTTGATGGCTGGAGGAGA 59.012 47.619 0.00 0.00 0.00 3.71
2678 2831 2.503895 AGTTTTGATGGCTGGAGGAG 57.496 50.000 0.00 0.00 0.00 3.69
2679 2832 3.873801 GCTTAGTTTTGATGGCTGGAGGA 60.874 47.826 0.00 0.00 0.00 3.71
2680 2833 2.424956 GCTTAGTTTTGATGGCTGGAGG 59.575 50.000 0.00 0.00 0.00 4.30
2681 2834 3.084039 TGCTTAGTTTTGATGGCTGGAG 58.916 45.455 0.00 0.00 0.00 3.86
2682 2835 3.153369 TGCTTAGTTTTGATGGCTGGA 57.847 42.857 0.00 0.00 0.00 3.86
2683 2836 3.940209 TTGCTTAGTTTTGATGGCTGG 57.060 42.857 0.00 0.00 0.00 4.85
2684 2837 6.199937 AGTATTGCTTAGTTTTGATGGCTG 57.800 37.500 0.00 0.00 0.00 4.85
2685 2838 6.434028 TGAAGTATTGCTTAGTTTTGATGGCT 59.566 34.615 0.00 0.00 37.59 4.75
2686 2839 6.620678 TGAAGTATTGCTTAGTTTTGATGGC 58.379 36.000 0.00 0.00 37.59 4.40
2687 2840 8.915654 GTTTGAAGTATTGCTTAGTTTTGATGG 58.084 33.333 0.00 0.00 37.59 3.51
2688 2841 9.462174 TGTTTGAAGTATTGCTTAGTTTTGATG 57.538 29.630 0.00 0.00 37.59 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.