Multiple sequence alignment - TraesCS3B01G457300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G457300 chr3B 100.000 8675 0 0 1 8675 698613636 698622310 0.000000e+00 16020.0
1 TraesCS3B01G457300 chr3D 94.972 3003 118 18 1618 4605 528617060 528620044 0.000000e+00 4678.0
2 TraesCS3B01G457300 chr3D 90.922 2159 108 44 6085 8185 528621459 528623587 0.000000e+00 2820.0
3 TraesCS3B01G457300 chr3D 94.007 1385 45 10 4702 6081 528620045 528621396 0.000000e+00 2063.0
4 TraesCS3B01G457300 chr3D 92.877 1053 31 22 582 1600 528615619 528616661 0.000000e+00 1489.0
5 TraesCS3B01G457300 chr3D 94.681 282 8 5 8400 8675 528623976 528624256 1.730000e-116 431.0
6 TraesCS3B01G457300 chr3D 93.301 209 9 4 1 206 528613579 528613785 3.940000e-78 303.0
7 TraesCS3B01G457300 chr3D 81.362 279 26 14 197 452 528614339 528614614 4.110000e-48 204.0
8 TraesCS3B01G457300 chr3A 88.519 3545 229 75 664 4157 662947293 662943876 0.000000e+00 4128.0
9 TraesCS3B01G457300 chr3A 90.078 1925 122 31 6271 8141 662941634 662939725 0.000000e+00 2433.0
10 TraesCS3B01G457300 chr3A 84.122 1310 138 44 4756 6021 662943220 662941937 0.000000e+00 1203.0
11 TraesCS3B01G457300 chr3A 91.667 288 24 0 4152 4439 662943912 662943625 4.880000e-107 399.0
12 TraesCS3B01G457300 chr3A 86.765 68 8 1 4575 4642 657439808 657439742 3.360000e-09 75.0
13 TraesCS3B01G457300 chr1A 88.235 102 9 1 4601 4702 399505856 399505758 1.530000e-22 119.0
14 TraesCS3B01G457300 chr5D 92.593 81 1 3 4601 4676 361576844 361576924 2.560000e-20 111.0
15 TraesCS3B01G457300 chr5D 84.848 99 10 4 4604 4702 150829339 150829246 2.580000e-15 95.3
16 TraesCS3B01G457300 chr4B 87.129 101 10 2 4602 4702 136675186 136675283 2.560000e-20 111.0
17 TraesCS3B01G457300 chr4B 96.667 60 2 0 4643 4702 192792754 192792813 5.540000e-17 100.0
18 TraesCS3B01G457300 chr2A 98.361 61 1 0 4642 4702 570726910 570726970 3.310000e-19 108.0
19 TraesCS3B01G457300 chr5A 89.286 84 8 1 4593 4676 655994216 655994134 4.280000e-18 104.0
20 TraesCS3B01G457300 chr6D 92.857 70 3 2 4643 4712 199210405 199210338 5.540000e-17 100.0
21 TraesCS3B01G457300 chr2D 92.857 70 3 2 4643 4712 479952676 479952609 5.540000e-17 100.0
22 TraesCS3B01G457300 chr5B 85.567 97 11 2 4604 4700 194190876 194190969 1.990000e-16 99.0
23 TraesCS3B01G457300 chr2B 83.810 105 9 5 4601 4702 22316931 22317030 9.270000e-15 93.5
24 TraesCS3B01G457300 chr7A 90.323 62 5 1 4594 4654 309401318 309401379 7.220000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G457300 chr3B 698613636 698622310 8674 False 16020.000000 16020 100.000000 1 8675 1 chr3B.!!$F1 8674
1 TraesCS3B01G457300 chr3D 528613579 528624256 10677 False 1712.571429 4678 91.731714 1 8675 7 chr3D.!!$F1 8674
2 TraesCS3B01G457300 chr3A 662939725 662947293 7568 True 2040.750000 4128 88.596500 664 8141 4 chr3A.!!$R2 7477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 2022 0.038310 CCCTTGTCCCCTTTCCTCAC 59.962 60.000 0.00 0.00 0.00 3.51 F
1569 3162 0.032515 TCTACCAGCGATCCCCTTCA 60.033 55.000 0.00 0.00 0.00 3.02 F
1601 3194 0.319555 CTCGTCTCCAACTTCCGCAA 60.320 55.000 0.00 0.00 0.00 4.85 F
1602 3195 0.319555 TCGTCTCCAACTTCCGCAAG 60.320 55.000 0.00 0.00 35.50 4.01 F
1980 3958 0.679505 ACTAAGCCTGAAGACGCACA 59.320 50.000 0.00 0.00 0.00 4.57 F
3935 5941 0.675083 TTTGCACTGAACTGGCCATG 59.325 50.000 5.51 0.44 0.00 3.66 F
4070 6076 1.130054 AGCAGCCTCCTCAACTGGAA 61.130 55.000 0.00 0.00 35.43 3.53 F
5318 7608 2.436646 AGGTTCATCCTTGGCGCG 60.437 61.111 0.00 0.00 45.67 6.86 F
6879 9277 2.092103 ACAAAGTAGTGTTTCCCTGCCA 60.092 45.455 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 4131 0.773644 ACCACTGCTCAGAACCCATT 59.226 50.000 3.60 0.00 0.00 3.16 R
2983 4964 0.682209 AATGGATGGCAGGAGCACAC 60.682 55.000 0.00 0.00 44.61 3.82 R
2985 4966 0.743097 GAAATGGATGGCAGGAGCAC 59.257 55.000 0.00 0.00 44.61 4.40 R
3477 5471 3.011949 ACACAACGTGATGCAATTTCC 57.988 42.857 0.24 0.00 36.96 3.13 R
3957 5963 2.623418 TTTCTCTCCAGGGCTCACTA 57.377 50.000 0.00 0.00 0.00 2.74 R
5335 7625 0.239082 TGAAAAGCATGACAGCTGCG 59.761 50.000 15.27 0.69 45.89 5.18 R
5625 7918 4.341806 ACATGCATTCCAGTGTTTTCTTCA 59.658 37.500 0.00 0.00 0.00 3.02 R
6947 9345 1.180029 AACTGCATTGCCTGATGGAC 58.820 50.000 6.12 0.00 34.57 4.02 R
7769 10188 0.107897 ATCCAAATACACCGCTCGCA 60.108 50.000 0.00 0.00 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 105 7.804843 TGATGTATGATAATTCATGTGTGCA 57.195 32.000 0.00 0.00 42.60 4.57
103 106 7.641760 TGATGTATGATAATTCATGTGTGCAC 58.358 34.615 10.75 10.75 42.60 4.57
176 180 4.646492 TGATAATGCAGTGACTAGAGCTGA 59.354 41.667 13.94 3.80 32.39 4.26
225 792 5.339530 CCCCTTTCTCTCCATCACAAGTAAT 60.340 44.000 0.00 0.00 0.00 1.89
252 819 3.220999 TTGTGTGGCGTCCTCTCGG 62.221 63.158 0.00 0.00 0.00 4.63
262 829 1.700955 GTCCTCTCGGCAACCCTATA 58.299 55.000 0.00 0.00 0.00 1.31
273 840 4.464947 GGCAACCCTATATCTTCTGCTTT 58.535 43.478 0.00 0.00 0.00 3.51
338 923 4.079253 ACTTTTGGTGCCTGTAAATCGAT 58.921 39.130 0.00 0.00 0.00 3.59
373 958 0.601558 TCTCTCTGTTGGTACACGCC 59.398 55.000 0.00 0.00 39.29 5.68
396 983 3.141488 CCTCCCTCTCCGTCACCG 61.141 72.222 0.00 0.00 0.00 4.94
398 985 2.360852 TCCCTCTCCGTCACCGAC 60.361 66.667 0.00 0.00 35.63 4.79
436 1023 2.493973 GCGCACCCTCTCTCTCTG 59.506 66.667 0.30 0.00 0.00 3.35
438 1025 1.510383 CGCACCCTCTCTCTCTGTG 59.490 63.158 0.00 0.00 0.00 3.66
439 1026 0.962855 CGCACCCTCTCTCTCTGTGA 60.963 60.000 0.00 0.00 0.00 3.58
440 1027 1.484038 GCACCCTCTCTCTCTGTGAT 58.516 55.000 0.00 0.00 0.00 3.06
441 1028 1.136695 GCACCCTCTCTCTCTGTGATG 59.863 57.143 0.00 0.00 0.00 3.07
442 1029 2.455557 CACCCTCTCTCTCTGTGATGT 58.544 52.381 0.00 0.00 0.00 3.06
443 1030 2.166050 CACCCTCTCTCTCTGTGATGTG 59.834 54.545 0.00 0.00 0.00 3.21
469 2015 3.966543 CGCCACCCTTGTCCCCTT 61.967 66.667 0.00 0.00 0.00 3.95
476 2022 0.038310 CCCTTGTCCCCTTTCCTCAC 59.962 60.000 0.00 0.00 0.00 3.51
516 2078 2.280524 CACCCTTCCGCGACAACA 60.281 61.111 8.23 0.00 0.00 3.33
522 2084 1.425267 CTTCCGCGACAACACACACA 61.425 55.000 8.23 0.00 0.00 3.72
538 2100 1.813896 CACATAAGTGCGAAATGCCG 58.186 50.000 0.00 0.00 45.60 5.69
546 2108 3.434319 CGAAATGCCGCCAGTGCT 61.434 61.111 0.00 0.00 34.43 4.40
547 2109 2.964978 GAAATGCCGCCAGTGCTT 59.035 55.556 0.00 0.00 34.43 3.91
548 2110 1.153958 GAAATGCCGCCAGTGCTTC 60.154 57.895 0.00 0.00 34.43 3.86
549 2111 1.865788 GAAATGCCGCCAGTGCTTCA 61.866 55.000 0.00 0.00 34.43 3.02
550 2112 2.146073 AAATGCCGCCAGTGCTTCAC 62.146 55.000 0.00 0.00 34.43 3.18
553 2115 4.335647 CCGCCAGTGCTTCACCCT 62.336 66.667 0.00 0.00 34.49 4.34
554 2116 2.281761 CGCCAGTGCTTCACCCTT 60.282 61.111 0.00 0.00 34.49 3.95
555 2117 2.328099 CGCCAGTGCTTCACCCTTC 61.328 63.158 0.00 0.00 34.49 3.46
556 2118 1.973812 GCCAGTGCTTCACCCTTCC 60.974 63.158 0.00 0.00 34.49 3.46
557 2119 1.455849 CCAGTGCTTCACCCTTCCA 59.544 57.895 0.00 0.00 34.49 3.53
559 2121 1.171308 CAGTGCTTCACCCTTCCATG 58.829 55.000 0.00 0.00 34.49 3.66
560 2122 0.038744 AGTGCTTCACCCTTCCATGG 59.961 55.000 4.97 4.97 34.49 3.66
561 2123 1.304381 TGCTTCACCCTTCCATGGC 60.304 57.895 6.96 0.00 0.00 4.40
563 2125 0.899717 GCTTCACCCTTCCATGGCAA 60.900 55.000 6.96 1.51 0.00 4.52
585 2147 1.813896 CACATAAGTGCGAAATGCCG 58.186 50.000 0.00 0.00 45.60 5.69
594 2156 3.747976 GAAATGCCGCCGGTGCTT 61.748 61.111 10.27 5.04 34.43 3.91
595 2157 3.683587 GAAATGCCGCCGGTGCTTC 62.684 63.158 10.27 6.89 34.43 3.86
606 2168 2.281484 GTGCTTCACCCTTCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
607 2169 1.896660 GTGCTTCACCCTTCCGCAA 60.897 57.895 0.00 0.00 31.77 4.85
608 2170 1.896660 TGCTTCACCCTTCCGCAAC 60.897 57.895 0.00 0.00 0.00 4.17
609 2171 1.896660 GCTTCACCCTTCCGCAACA 60.897 57.895 0.00 0.00 0.00 3.33
610 2172 1.452145 GCTTCACCCTTCCGCAACAA 61.452 55.000 0.00 0.00 0.00 2.83
611 2173 0.310854 CTTCACCCTTCCGCAACAAC 59.689 55.000 0.00 0.00 0.00 3.32
612 2174 0.394488 TTCACCCTTCCGCAACAACA 60.394 50.000 0.00 0.00 0.00 3.33
613 2175 1.098712 TCACCCTTCCGCAACAACAC 61.099 55.000 0.00 0.00 0.00 3.32
614 2176 1.077357 ACCCTTCCGCAACAACACA 60.077 52.632 0.00 0.00 0.00 3.72
615 2177 1.358759 CCCTTCCGCAACAACACAC 59.641 57.895 0.00 0.00 0.00 3.82
616 2178 1.380403 CCCTTCCGCAACAACACACA 61.380 55.000 0.00 0.00 0.00 3.72
617 2179 0.248458 CCTTCCGCAACAACACACAC 60.248 55.000 0.00 0.00 0.00 3.82
618 2180 0.449786 CTTCCGCAACAACACACACA 59.550 50.000 0.00 0.00 0.00 3.72
619 2181 1.065401 CTTCCGCAACAACACACACAT 59.935 47.619 0.00 0.00 0.00 3.21
620 2182 1.954927 TCCGCAACAACACACACATA 58.045 45.000 0.00 0.00 0.00 2.29
621 2183 2.289565 TCCGCAACAACACACACATAA 58.710 42.857 0.00 0.00 0.00 1.90
622 2184 2.289274 TCCGCAACAACACACACATAAG 59.711 45.455 0.00 0.00 0.00 1.73
623 2185 2.032799 CCGCAACAACACACACATAAGT 59.967 45.455 0.00 0.00 0.00 2.24
634 2196 2.232239 CACATAAGTGCGCTTGTCAC 57.768 50.000 22.59 0.00 39.21 3.67
635 2197 1.530720 CACATAAGTGCGCTTGTCACA 59.469 47.619 22.59 2.02 39.21 3.58
636 2198 2.160219 CACATAAGTGCGCTTGTCACAT 59.840 45.455 22.59 4.56 39.21 3.21
637 2199 2.813754 ACATAAGTGCGCTTGTCACATT 59.186 40.909 22.59 0.00 36.93 2.71
638 2200 4.000325 ACATAAGTGCGCTTGTCACATTA 59.000 39.130 22.59 0.00 36.93 1.90
639 2201 4.454161 ACATAAGTGCGCTTGTCACATTAA 59.546 37.500 22.59 0.00 36.93 1.40
640 2202 3.980646 AAGTGCGCTTGTCACATTAAA 57.019 38.095 12.68 0.00 36.93 1.52
641 2203 3.980646 AGTGCGCTTGTCACATTAAAA 57.019 38.095 9.73 0.00 36.93 1.52
642 2204 3.888934 AGTGCGCTTGTCACATTAAAAG 58.111 40.909 9.73 0.00 36.93 2.27
643 2205 2.405025 GTGCGCTTGTCACATTAAAAGC 59.595 45.455 9.73 0.00 41.26 3.51
644 2206 1.985684 GCGCTTGTCACATTAAAAGCC 59.014 47.619 0.00 0.00 41.56 4.35
651 2213 2.488153 GTCACATTAAAAGCCGCCTTCT 59.512 45.455 0.00 0.00 0.00 2.85
686 2249 8.296799 CACATATGTGCAAATTTAAACACAGT 57.703 30.769 22.27 12.63 45.39 3.55
687 2250 8.763356 CACATATGTGCAAATTTAAACACAGTT 58.237 29.630 22.27 10.83 45.39 3.16
721 2284 6.484308 AGATTGCAAATTTCTCCAACCAAAAG 59.516 34.615 1.71 0.00 0.00 2.27
727 2291 7.443879 GCAAATTTCTCCAACCAAAAGGATTTA 59.556 33.333 0.00 0.00 37.28 1.40
729 2293 9.725019 AAATTTCTCCAACCAAAAGGATTTATC 57.275 29.630 0.00 0.00 37.28 1.75
738 2302 8.619546 CAACCAAAAGGATTTATCTTTGCAAAA 58.380 29.630 13.84 5.01 37.28 2.44
781 2353 2.700371 CTCCCTTGGGAAAGCAAAAACT 59.300 45.455 9.93 0.00 0.00 2.66
783 2355 4.290942 TCCCTTGGGAAAGCAAAAACTAA 58.709 39.130 5.82 0.00 0.00 2.24
789 2361 4.141824 TGGGAAAGCAAAAACTAACCCAAG 60.142 41.667 0.00 0.00 40.11 3.61
794 2366 5.018539 AGCAAAAACTAACCCAAGGAAAC 57.981 39.130 0.00 0.00 0.00 2.78
849 2436 0.828343 GATCCCCACTCTACCCCGAG 60.828 65.000 0.00 0.00 37.07 4.63
910 2499 3.391382 CCTCACACCTCCCCCGTC 61.391 72.222 0.00 0.00 0.00 4.79
1569 3162 0.032515 TCTACCAGCGATCCCCTTCA 60.033 55.000 0.00 0.00 0.00 3.02
1601 3194 0.319555 CTCGTCTCCAACTTCCGCAA 60.320 55.000 0.00 0.00 0.00 4.85
1602 3195 0.319555 TCGTCTCCAACTTCCGCAAG 60.320 55.000 0.00 0.00 35.50 4.01
1666 3641 7.177744 TCCAATTTCTTTCCCCAACTACAATAC 59.822 37.037 0.00 0.00 0.00 1.89
1701 3676 1.925285 ATTTGCCCCTCTCATGCCGA 61.925 55.000 0.00 0.00 0.00 5.54
1729 3704 1.169661 ACTCCTATCTCAGAGGCGCG 61.170 60.000 0.00 0.00 34.27 6.86
1804 3779 5.339611 CGTGCTAAAGCTTCATGTTTTGTAC 59.660 40.000 0.00 0.00 42.66 2.90
1858 3833 6.302269 ACTAGCTATTGCCTCTAATTGCATT 58.698 36.000 0.00 0.00 39.94 3.56
1871 3846 7.861372 CCTCTAATTGCATTTATTGAGCTTGAG 59.139 37.037 10.12 7.21 0.00 3.02
1962 3940 1.000274 GGTGCAAAGATGTGGGTTCAC 60.000 52.381 0.00 0.00 43.87 3.18
1980 3958 0.679505 ACTAAGCCTGAAGACGCACA 59.320 50.000 0.00 0.00 0.00 4.57
1984 3962 1.609208 AGCCTGAAGACGCACATTTT 58.391 45.000 0.00 0.00 0.00 1.82
1985 3963 1.537202 AGCCTGAAGACGCACATTTTC 59.463 47.619 0.00 0.00 0.00 2.29
2051 4030 9.131791 AGGATAGAGCAACTTTTTAAAACTCAA 57.868 29.630 14.44 0.00 0.00 3.02
2117 4096 5.472137 TCGTTGGGATTTTTAGGAACTCTTG 59.528 40.000 0.00 0.00 41.75 3.02
2118 4097 5.240844 CGTTGGGATTTTTAGGAACTCTTGT 59.759 40.000 0.00 0.00 41.75 3.16
2135 4114 6.118170 ACTCTTGTAGCAGATGTAAATGCAT 58.882 36.000 0.00 0.00 45.01 3.96
2136 4115 6.600822 ACTCTTGTAGCAGATGTAAATGCATT 59.399 34.615 5.99 5.99 45.01 3.56
2137 4116 7.770433 ACTCTTGTAGCAGATGTAAATGCATTA 59.230 33.333 13.39 0.00 45.01 1.90
2138 4117 8.504812 TCTTGTAGCAGATGTAAATGCATTAA 57.495 30.769 13.39 1.94 45.01 1.40
2165 4144 6.515272 TTATTTCTGAAATGGGTTCTGAGC 57.485 37.500 22.47 0.00 42.90 4.26
2250 4229 2.042464 TGCCCACTCTATGACCTGATC 58.958 52.381 0.00 0.00 0.00 2.92
2277 4256 4.156455 AGATCCAAATGCGTACAAGGAT 57.844 40.909 2.79 2.79 38.18 3.24
2533 4512 0.890683 AAATACTTGCTGTGCTGGGC 59.109 50.000 0.00 0.00 0.00 5.36
2578 4557 3.871594 GTCATATGTACACTGTCTTGGGC 59.128 47.826 0.00 0.00 0.00 5.36
2766 4747 2.029649 ACTTCAATGATGCTGTGGTTGC 60.030 45.455 0.00 0.00 0.00 4.17
2784 4765 5.175859 GGTTGCTACATCACTAAGCTAACA 58.824 41.667 0.00 0.00 37.16 2.41
2785 4766 5.817816 GGTTGCTACATCACTAAGCTAACAT 59.182 40.000 0.00 0.00 37.16 2.71
2942 4923 2.982488 AGAGGTGAGGGATGTGAAAACT 59.018 45.455 0.00 0.00 0.00 2.66
2965 4946 8.641498 ACTTTAACATCTTCAGAATCCATGTT 57.359 30.769 14.95 14.95 40.12 2.71
3017 4998 9.199982 CTGCCATCCATTTCAAATATATTTGTC 57.800 33.333 28.77 12.33 45.49 3.18
3019 5000 9.768662 GCCATCCATTTCAAATATATTTGTCTT 57.231 29.630 28.77 16.33 45.49 3.01
3039 5020 7.600960 TGTCTTGTGCTGCAATAAAATGAATA 58.399 30.769 2.77 0.00 36.36 1.75
3089 5070 6.262049 TGCAGCTACTGAACTTAATTTTGTCA 59.738 34.615 0.00 0.00 32.44 3.58
3116 5097 7.867445 AATGGTGATATTTGTTGTTCGTTTC 57.133 32.000 0.00 0.00 0.00 2.78
3190 5172 8.922058 AGCTATGTCAATTTGTTTGATTCATC 57.078 30.769 0.00 0.00 45.77 2.92
3259 5248 7.878127 CCATTTCCATAGTTATTATCCGTGACT 59.122 37.037 0.00 0.00 0.00 3.41
3477 5471 3.735237 ACTGATCACCACTATAAGGCG 57.265 47.619 0.00 0.00 0.00 5.52
3608 5604 5.827568 AATTTTTATGCTGTCGTTGCTTG 57.172 34.783 0.00 0.00 0.00 4.01
3840 5843 8.234546 CCACTGAGTTTATTAATGCTAAACGTT 58.765 33.333 0.00 0.00 41.67 3.99
3934 5940 0.675633 GTTTGCACTGAACTGGCCAT 59.324 50.000 5.51 0.00 0.00 4.40
3935 5941 0.675083 TTTGCACTGAACTGGCCATG 59.325 50.000 5.51 0.44 0.00 3.66
3972 5978 2.392662 CTTGATAGTGAGCCCTGGAGA 58.607 52.381 0.00 0.00 0.00 3.71
4032 6038 5.132502 TGTTATTCAGCTTCATATGGTGGG 58.867 41.667 2.13 0.00 34.15 4.61
4070 6076 1.130054 AGCAGCCTCCTCAACTGGAA 61.130 55.000 0.00 0.00 35.43 3.53
4161 6170 3.519510 CAGGTTGATTCCTAACTCTCCCA 59.480 47.826 0.00 0.00 35.87 4.37
4196 6205 4.037927 TCAATTCCTACCTCCGGATTCTT 58.962 43.478 3.57 0.00 0.00 2.52
4259 6268 9.744468 ATTGTGTGTTTTGTATTTCCTTTCTAC 57.256 29.630 0.00 0.00 0.00 2.59
4291 6300 7.648039 TGAGTTTTGGGCGGTAATTTATATT 57.352 32.000 0.00 0.00 0.00 1.28
4439 6448 3.944087 ACTGTCAGGGTATGCTCTTTTC 58.056 45.455 4.53 0.00 0.00 2.29
4453 6462 5.376625 TGCTCTTTTCTGACCAACTTATGT 58.623 37.500 0.00 0.00 0.00 2.29
4476 6486 6.035843 GTGTAATATTGTGTTGAGGCAATGG 58.964 40.000 0.00 0.00 36.75 3.16
4548 6558 8.270744 AGTCAAGCTGAAATAGTTCCAGATATT 58.729 33.333 0.00 0.00 32.28 1.28
4605 6616 7.702348 ACAGTTTCTTCAATTTGCAAAGTACTC 59.298 33.333 18.19 2.76 0.00 2.59
4606 6617 7.168135 CAGTTTCTTCAATTTGCAAAGTACTCC 59.832 37.037 18.19 0.65 0.00 3.85
4607 6618 5.705609 TCTTCAATTTGCAAAGTACTCCC 57.294 39.130 18.19 0.00 0.00 4.30
4608 6619 5.385198 TCTTCAATTTGCAAAGTACTCCCT 58.615 37.500 18.19 0.00 0.00 4.20
4609 6620 5.473504 TCTTCAATTTGCAAAGTACTCCCTC 59.526 40.000 18.19 0.00 0.00 4.30
4610 6621 4.985538 TCAATTTGCAAAGTACTCCCTCT 58.014 39.130 18.19 0.00 0.00 3.69
4611 6622 4.761739 TCAATTTGCAAAGTACTCCCTCTG 59.238 41.667 18.19 0.00 0.00 3.35
4612 6623 3.857157 TTTGCAAAGTACTCCCTCTGT 57.143 42.857 8.05 0.00 0.00 3.41
4613 6624 4.967084 TTTGCAAAGTACTCCCTCTGTA 57.033 40.909 8.05 0.00 0.00 2.74
4614 6625 4.967084 TTGCAAAGTACTCCCTCTGTAA 57.033 40.909 0.00 0.00 0.00 2.41
4615 6626 4.967084 TGCAAAGTACTCCCTCTGTAAA 57.033 40.909 0.00 0.00 0.00 2.01
4616 6627 4.894784 TGCAAAGTACTCCCTCTGTAAAG 58.105 43.478 0.00 0.00 0.00 1.85
4617 6628 4.591498 TGCAAAGTACTCCCTCTGTAAAGA 59.409 41.667 0.00 0.00 0.00 2.52
4618 6629 5.071250 TGCAAAGTACTCCCTCTGTAAAGAA 59.929 40.000 0.00 0.00 0.00 2.52
4619 6630 5.995897 GCAAAGTACTCCCTCTGTAAAGAAA 59.004 40.000 0.00 0.00 0.00 2.52
4620 6631 6.655425 GCAAAGTACTCCCTCTGTAAAGAAAT 59.345 38.462 0.00 0.00 0.00 2.17
4621 6632 7.822822 GCAAAGTACTCCCTCTGTAAAGAAATA 59.177 37.037 0.00 0.00 0.00 1.40
4622 6633 9.892130 CAAAGTACTCCCTCTGTAAAGAAATAT 57.108 33.333 0.00 0.00 0.00 1.28
4628 6639 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
4629 6640 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
4630 6641 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
4631 6642 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
4679 6690 7.811117 ATAAGAGCGTTTAGATCACTAGAGT 57.189 36.000 0.00 0.00 37.82 3.24
4680 6691 8.905660 ATAAGAGCGTTTAGATCACTAGAGTA 57.094 34.615 0.00 0.00 37.82 2.59
4681 6692 6.854496 AGAGCGTTTAGATCACTAGAGTAG 57.146 41.667 0.00 0.00 37.82 2.57
4682 6693 6.350906 AGAGCGTTTAGATCACTAGAGTAGT 58.649 40.000 0.00 0.00 37.82 2.73
4713 6724 7.464830 AACACTCTTATATCATGTTGTACGC 57.535 36.000 0.00 0.00 32.42 4.42
4717 6728 6.582672 ACTCTTATATCATGTTGTACGCATCG 59.417 38.462 0.00 0.00 0.00 3.84
4831 7109 7.065085 CCTTCGAGTTTCACAAGTATGATTGAT 59.935 37.037 0.00 0.00 34.20 2.57
4846 7124 2.793288 TTGATGCTGCTTCATCCTCA 57.207 45.000 17.47 1.46 41.54 3.86
4853 7131 2.751259 GCTGCTTCATCCTCATGTTCAA 59.249 45.455 0.00 0.00 0.00 2.69
5107 7386 5.195001 TGTTGCCTGAGGTAAATGAAAAC 57.805 39.130 2.85 0.00 0.00 2.43
5249 7531 4.982916 CAGAAGTATAACGATGCTGGGTAC 59.017 45.833 0.00 0.00 0.00 3.34
5318 7608 2.436646 AGGTTCATCCTTGGCGCG 60.437 61.111 0.00 0.00 45.67 6.86
5520 7812 4.017499 ACTGTATGGCAACCTTTTCCCTAT 60.017 41.667 0.00 0.00 0.00 2.57
5599 7892 6.092122 GTCCGATACATGATTCAACACTGAAA 59.908 38.462 0.00 0.00 44.64 2.69
5983 8281 6.782150 ACGTTATGCATTTCTTTACTAAGCC 58.218 36.000 3.54 0.00 0.00 4.35
6081 8404 2.426842 GGGGGATCTGAAGTTTGGAG 57.573 55.000 0.00 0.00 0.00 3.86
6086 8469 3.053320 GGGATCTGAAGTTTGGAGGGATT 60.053 47.826 0.00 0.00 0.00 3.01
6096 8479 6.590234 AGTTTGGAGGGATTTTACATGTTC 57.410 37.500 2.30 0.00 0.00 3.18
6181 8567 7.912056 TGAGAAATCTATCCTGTTGACTTTG 57.088 36.000 0.00 0.00 0.00 2.77
6251 8639 7.875041 ACATTAATCTCATCTTCGGGAATACAG 59.125 37.037 0.00 0.00 0.00 2.74
6362 8750 3.991773 CACAATTCAGTGAAATGCCAAGG 59.008 43.478 18.81 2.74 42.05 3.61
6367 8755 2.158475 TCAGTGAAATGCCAAGGGAAGT 60.158 45.455 0.00 0.00 0.00 3.01
6391 8779 7.283127 AGTCTTAGTCAAAAGATGAAGCAAACA 59.717 33.333 0.00 0.00 40.50 2.83
6392 8780 8.078596 GTCTTAGTCAAAAGATGAAGCAAACAT 58.921 33.333 0.00 0.00 40.50 2.71
6418 8806 8.614469 ATCTAGCATTCAGAGTAAATAAAGCC 57.386 34.615 0.00 0.00 0.00 4.35
6515 8909 7.546277 CATGTTCGTGTGAATTTGTTTACTTG 58.454 34.615 0.00 0.00 36.29 3.16
6841 9239 5.740513 GCCTATGAGCTACCTAAACCTTCAG 60.741 48.000 0.00 0.00 0.00 3.02
6879 9277 2.092103 ACAAAGTAGTGTTTCCCTGCCA 60.092 45.455 0.00 0.00 0.00 4.92
6947 9345 0.816825 CATCATCAGGCAAGGTCCCG 60.817 60.000 0.00 0.00 0.00 5.14
7008 9406 2.289694 ACTTCGTCTTGATGGGGTTCAG 60.290 50.000 0.00 0.00 0.00 3.02
7043 9444 7.193338 GGAAGGGAATCCTATACCTCTTCTAT 58.807 42.308 0.00 0.00 44.07 1.98
7084 9485 1.186917 CCAACAAGCAGCCAATGGGA 61.187 55.000 0.00 0.00 35.59 4.37
7123 9524 3.910627 AGGAGGATTGGTAACTTCACAGT 59.089 43.478 0.00 0.00 37.61 3.55
7128 9529 1.860676 TGGTAACTTCACAGTCACGC 58.139 50.000 0.00 0.00 30.45 5.34
7243 9647 5.221581 GCTAAACCTAATCGGAAGGGACATA 60.222 44.000 1.07 0.00 38.54 2.29
7368 9772 0.250295 TGGGTGAAGAGCCTGTTTCG 60.250 55.000 0.00 0.00 40.76 3.46
7383 9787 1.464997 GTTTCGTCAAGTGCTCCATCC 59.535 52.381 0.00 0.00 0.00 3.51
7413 9817 1.215647 CTCGCAGTTAGACGGGCTT 59.784 57.895 0.00 0.00 0.00 4.35
7520 9924 3.118775 TCGGATGATGTACAAACTGGAGG 60.119 47.826 0.00 0.00 0.00 4.30
7542 9946 0.603569 CTAGTGCGTCCACAGAACCT 59.396 55.000 0.00 0.00 44.53 3.50
7557 9961 0.385390 AACCTGCACAAAAAGGAGCG 59.615 50.000 0.00 0.00 37.01 5.03
7602 10006 0.107312 AAGATGCGCTGCAGAAGGAT 60.107 50.000 20.43 16.86 43.65 3.24
7720 10125 1.822371 ACAAGTTGGGCAAAACGAGTT 59.178 42.857 7.96 0.00 35.13 3.01
7737 10142 1.177401 GTTTGCTCCCAAGATGGTCC 58.823 55.000 0.00 0.00 35.17 4.46
7741 10146 0.329596 GCTCCCAAGATGGTCCTGTT 59.670 55.000 0.00 0.00 35.17 3.16
7748 10153 3.221771 CAAGATGGTCCTGTTGGTGAAA 58.778 45.455 0.00 0.00 34.23 2.69
7753 10172 1.073284 GGTCCTGTTGGTGAAAGGCTA 59.927 52.381 0.00 0.00 34.23 3.93
7769 10188 1.065854 GGCTACTTGATCAGCACAGGT 60.066 52.381 6.95 0.00 39.63 4.00
7787 10207 1.017177 GTGCGAGCGGTGTATTTGGA 61.017 55.000 0.00 0.00 0.00 3.53
7858 10281 1.964373 GTTGATGGGCGGACGTGTT 60.964 57.895 0.00 0.00 0.00 3.32
7867 10290 3.656045 GGACGTGTTTGCGGGGTG 61.656 66.667 0.00 0.00 35.98 4.61
7908 10331 5.747951 TTTCGCATGGCAAAATTTTCTTT 57.252 30.435 0.00 0.00 0.00 2.52
7909 10332 4.728917 TCGCATGGCAAAATTTTCTTTG 57.271 36.364 0.00 0.00 38.97 2.77
7911 10334 4.210955 TCGCATGGCAAAATTTTCTTTGTC 59.789 37.500 0.00 0.00 40.56 3.18
7940 10367 9.414295 GACTAGTGTGTACATGTGTTTATTACA 57.586 33.333 9.11 0.00 0.00 2.41
7976 10416 1.293924 CATGATGGTCCAGAAGCGTC 58.706 55.000 0.00 0.00 41.00 5.19
7985 10425 1.595794 TCCAGAAGCGTCGTTTTGTTC 59.404 47.619 0.00 0.00 0.00 3.18
7998 10438 1.125093 TTTGTTCAGCTCGGAGGGGA 61.125 55.000 7.20 0.00 0.00 4.81
7999 10439 1.544825 TTGTTCAGCTCGGAGGGGAG 61.545 60.000 7.20 0.00 37.11 4.30
8008 10464 2.125225 GGAGGGGAGGGGTCAGTT 59.875 66.667 0.00 0.00 0.00 3.16
8020 10476 3.157087 GGGGTCAGTTGATGTTTGATGT 58.843 45.455 0.00 0.00 0.00 3.06
8021 10477 3.573967 GGGGTCAGTTGATGTTTGATGTT 59.426 43.478 0.00 0.00 0.00 2.71
8022 10478 4.321230 GGGGTCAGTTGATGTTTGATGTTC 60.321 45.833 0.00 0.00 0.00 3.18
8065 10522 1.261480 ACAGTAGCTGGACACTGGAG 58.739 55.000 16.69 0.00 45.22 3.86
8095 10555 7.875971 AGAAATACTGTGTTGTCAATTCCTTC 58.124 34.615 0.00 0.00 0.00 3.46
8148 10610 2.099141 TGGCTAGAGACATGTTGTGC 57.901 50.000 0.00 0.84 0.00 4.57
8149 10611 1.339055 TGGCTAGAGACATGTTGTGCC 60.339 52.381 16.81 16.81 35.67 5.01
8151 10613 2.014068 GCTAGAGACATGTTGTGCCCC 61.014 57.143 0.00 0.00 0.00 5.80
8154 10616 0.251341 GAGACATGTTGTGCCCCCTT 60.251 55.000 0.00 0.00 0.00 3.95
8163 10625 0.539438 TGTGCCCCCTTGATGTGAAC 60.539 55.000 0.00 0.00 0.00 3.18
8164 10626 1.076549 TGCCCCCTTGATGTGAACC 59.923 57.895 0.00 0.00 0.00 3.62
8169 10631 2.562738 CCCCCTTGATGTGAACCTTTTC 59.437 50.000 0.00 0.00 0.00 2.29
8174 10636 6.348498 CCCTTGATGTGAACCTTTTCTTTTT 58.652 36.000 0.00 0.00 32.36 1.94
8175 10637 6.479990 CCCTTGATGTGAACCTTTTCTTTTTC 59.520 38.462 0.00 0.00 32.36 2.29
8180 10642 5.175127 TGTGAACCTTTTCTTTTTCCTTGC 58.825 37.500 0.00 0.00 32.36 4.01
8185 10647 4.225042 ACCTTTTCTTTTTCCTTGCTTGGT 59.775 37.500 0.00 0.00 0.00 3.67
8188 10650 6.150976 CCTTTTCTTTTTCCTTGCTTGGTTTT 59.849 34.615 0.00 0.00 0.00 2.43
8189 10651 7.309133 CCTTTTCTTTTTCCTTGCTTGGTTTTT 60.309 33.333 0.00 0.00 0.00 1.94
8214 10676 6.053650 TGCATGATAGAGATGAAAGAAGTGG 58.946 40.000 0.00 0.00 0.00 4.00
8217 10679 5.982356 TGATAGAGATGAAAGAAGTGGGTG 58.018 41.667 0.00 0.00 0.00 4.61
8218 10680 3.064900 AGAGATGAAAGAAGTGGGTGC 57.935 47.619 0.00 0.00 0.00 5.01
8219 10681 2.087646 GAGATGAAAGAAGTGGGTGCC 58.912 52.381 0.00 0.00 0.00 5.01
8221 10683 2.087646 GATGAAAGAAGTGGGTGCCTC 58.912 52.381 0.00 0.00 0.00 4.70
8222 10684 0.250295 TGAAAGAAGTGGGTGCCTCG 60.250 55.000 0.00 0.00 0.00 4.63
8223 10685 1.578206 GAAAGAAGTGGGTGCCTCGC 61.578 60.000 0.00 0.00 0.00 5.03
8224 10686 3.553095 AAGAAGTGGGTGCCTCGCC 62.553 63.158 0.00 0.00 0.00 5.54
8232 10694 4.344865 GTGCCTCGCCCCTCCAAA 62.345 66.667 0.00 0.00 0.00 3.28
8233 10695 4.344865 TGCCTCGCCCCTCCAAAC 62.345 66.667 0.00 0.00 0.00 2.93
8238 10700 3.053896 CGCCCCTCCAAACCGAAC 61.054 66.667 0.00 0.00 0.00 3.95
8240 10702 1.681076 GCCCCTCCAAACCGAACTA 59.319 57.895 0.00 0.00 0.00 2.24
8242 10704 0.252197 CCCCTCCAAACCGAACTAGG 59.748 60.000 0.00 0.00 37.30 3.02
8243 10705 1.272807 CCCTCCAAACCGAACTAGGA 58.727 55.000 0.00 0.00 34.73 2.94
8244 10706 1.838077 CCCTCCAAACCGAACTAGGAT 59.162 52.381 0.00 0.00 34.73 3.24
8245 10707 2.158943 CCCTCCAAACCGAACTAGGATC 60.159 54.545 0.00 0.00 34.73 3.36
8246 10708 2.766828 CCTCCAAACCGAACTAGGATCT 59.233 50.000 0.00 0.00 34.73 2.75
8247 10709 3.181474 CCTCCAAACCGAACTAGGATCTC 60.181 52.174 0.00 0.00 34.73 2.75
8248 10710 3.702045 CTCCAAACCGAACTAGGATCTCT 59.298 47.826 0.00 0.00 34.73 3.10
8249 10711 4.863548 TCCAAACCGAACTAGGATCTCTA 58.136 43.478 0.00 0.00 34.73 2.43
8252 10714 5.826737 CCAAACCGAACTAGGATCTCTACTA 59.173 44.000 0.00 0.00 34.73 1.82
8253 10715 6.016943 CCAAACCGAACTAGGATCTCTACTAG 60.017 46.154 0.00 0.00 41.83 2.57
8254 10716 4.644498 ACCGAACTAGGATCTCTACTAGC 58.356 47.826 0.00 0.00 40.19 3.42
8255 10717 4.102838 ACCGAACTAGGATCTCTACTAGCA 59.897 45.833 0.00 0.00 40.19 3.49
8256 10718 5.064558 CCGAACTAGGATCTCTACTAGCAA 58.935 45.833 0.00 0.00 40.19 3.91
8258 10720 5.761234 CGAACTAGGATCTCTACTAGCAAGT 59.239 44.000 0.00 0.00 40.19 3.16
8259 10721 6.261381 CGAACTAGGATCTCTACTAGCAAGTT 59.739 42.308 0.00 0.00 40.19 2.66
8262 10724 7.777095 ACTAGGATCTCTACTAGCAAGTTTTG 58.223 38.462 0.00 0.00 40.19 2.44
8278 10740 6.463478 CAAGTTTTGCTAATTCATTCATGCG 58.537 36.000 0.00 0.00 0.00 4.73
8279 10741 5.104374 AGTTTTGCTAATTCATTCATGCGG 58.896 37.500 0.00 0.00 0.00 5.69
8280 10742 4.717233 TTTGCTAATTCATTCATGCGGT 57.283 36.364 0.00 0.00 0.00 5.68
8282 10744 5.422666 TTGCTAATTCATTCATGCGGTAG 57.577 39.130 0.00 0.00 0.00 3.18
8284 10746 3.815401 GCTAATTCATTCATGCGGTAGGT 59.185 43.478 0.00 0.00 0.00 3.08
8285 10747 4.083802 GCTAATTCATTCATGCGGTAGGTC 60.084 45.833 0.00 0.00 0.00 3.85
8286 10748 1.934589 TTCATTCATGCGGTAGGTCG 58.065 50.000 0.00 0.00 0.00 4.79
8294 10756 3.763319 CGGTAGGTCGCTCAAACG 58.237 61.111 0.00 0.00 0.00 3.60
8295 10757 1.210931 CGGTAGGTCGCTCAAACGA 59.789 57.895 0.00 0.00 40.36 3.85
8304 10766 1.853319 GCTCAAACGACACACGAGG 59.147 57.895 0.00 0.00 45.77 4.63
8305 10767 0.596600 GCTCAAACGACACACGAGGA 60.597 55.000 0.00 0.00 45.77 3.71
8306 10768 1.847818 CTCAAACGACACACGAGGAA 58.152 50.000 0.00 0.00 45.77 3.36
8307 10769 2.198406 CTCAAACGACACACGAGGAAA 58.802 47.619 0.00 0.00 45.77 3.13
8308 10770 2.605818 CTCAAACGACACACGAGGAAAA 59.394 45.455 0.00 0.00 45.77 2.29
8310 10772 3.246699 TCAAACGACACACGAGGAAAATC 59.753 43.478 0.00 0.00 45.77 2.17
8311 10773 2.519377 ACGACACACGAGGAAAATCA 57.481 45.000 0.00 0.00 45.77 2.57
8313 10775 1.126846 CGACACACGAGGAAAATCAGC 59.873 52.381 0.00 0.00 45.77 4.26
8315 10777 0.443869 CACACGAGGAAAATCAGCCG 59.556 55.000 0.00 0.00 0.00 5.52
8316 10778 0.034896 ACACGAGGAAAATCAGCCGT 59.965 50.000 0.00 0.00 0.00 5.68
8317 10779 1.274167 ACACGAGGAAAATCAGCCGTA 59.726 47.619 0.00 0.00 0.00 4.02
8318 10780 1.927174 CACGAGGAAAATCAGCCGTAG 59.073 52.381 0.00 0.00 0.00 3.51
8337 10799 6.422776 CGTAGGTCAGCAATCATAAAAAGT 57.577 37.500 0.00 0.00 0.00 2.66
8339 10801 5.551760 AGGTCAGCAATCATAAAAAGTCG 57.448 39.130 0.00 0.00 0.00 4.18
8340 10802 5.003804 AGGTCAGCAATCATAAAAAGTCGT 58.996 37.500 0.00 0.00 0.00 4.34
8341 10803 5.088739 GGTCAGCAATCATAAAAAGTCGTG 58.911 41.667 0.00 0.00 0.00 4.35
8342 10804 5.088739 GTCAGCAATCATAAAAAGTCGTGG 58.911 41.667 0.00 0.00 0.00 4.94
8345 10807 5.796935 CAGCAATCATAAAAAGTCGTGGAAG 59.203 40.000 0.00 0.00 0.00 3.46
8346 10808 4.558860 GCAATCATAAAAAGTCGTGGAAGC 59.441 41.667 0.00 0.00 0.00 3.86
8347 10809 5.698832 CAATCATAAAAAGTCGTGGAAGCA 58.301 37.500 0.00 0.00 0.00 3.91
8348 10810 5.957842 ATCATAAAAAGTCGTGGAAGCAA 57.042 34.783 0.00 0.00 0.00 3.91
8349 10811 5.759506 TCATAAAAAGTCGTGGAAGCAAA 57.240 34.783 0.00 0.00 0.00 3.68
8350 10812 6.325919 TCATAAAAAGTCGTGGAAGCAAAT 57.674 33.333 0.00 0.00 0.00 2.32
8351 10813 7.441890 TCATAAAAAGTCGTGGAAGCAAATA 57.558 32.000 0.00 0.00 0.00 1.40
8352 10814 7.302524 TCATAAAAAGTCGTGGAAGCAAATAC 58.697 34.615 0.00 0.00 0.00 1.89
8353 10815 4.499037 AAAAGTCGTGGAAGCAAATACC 57.501 40.909 0.00 0.00 0.00 2.73
8356 10818 2.026262 AGTCGTGGAAGCAAATACCCAT 60.026 45.455 0.00 0.00 0.00 4.00
8358 10820 3.942748 GTCGTGGAAGCAAATACCCATAA 59.057 43.478 0.00 0.00 0.00 1.90
8359 10821 4.578928 GTCGTGGAAGCAAATACCCATAAT 59.421 41.667 0.00 0.00 0.00 1.28
8361 10823 6.261381 GTCGTGGAAGCAAATACCCATAATTA 59.739 38.462 0.00 0.00 0.00 1.40
8362 10824 6.829298 TCGTGGAAGCAAATACCCATAATTAA 59.171 34.615 0.00 0.00 0.00 1.40
8363 10825 7.012894 TCGTGGAAGCAAATACCCATAATTAAG 59.987 37.037 0.00 0.00 0.00 1.85
8384 11037 6.893020 AAGATGTACCTCCACTATTCCTTT 57.107 37.500 0.00 0.00 0.00 3.11
8386 11039 7.272144 AGATGTACCTCCACTATTCCTTTTT 57.728 36.000 0.00 0.00 0.00 1.94
8414 11067 5.411781 TGTTGTTGTTGTGTCAAATTACCC 58.588 37.500 0.00 0.00 0.00 3.69
8421 11074 5.654650 TGTTGTGTCAAATTACCCCCATATC 59.345 40.000 0.00 0.00 0.00 1.63
8422 11075 4.456535 TGTGTCAAATTACCCCCATATCG 58.543 43.478 0.00 0.00 0.00 2.92
8423 11076 4.080243 TGTGTCAAATTACCCCCATATCGT 60.080 41.667 0.00 0.00 0.00 3.73
8424 11077 4.274950 GTGTCAAATTACCCCCATATCGTG 59.725 45.833 0.00 0.00 0.00 4.35
8458 11116 1.180029 GTCTGTTGCATTCCATGGCT 58.820 50.000 6.96 0.00 0.00 4.75
8586 11245 2.991076 GCACGGAGCTGGACGTACT 61.991 63.158 0.00 0.00 42.04 2.73
8607 11266 5.900425 ACTGCAGTAGACAGTAATGAGATG 58.100 41.667 20.16 0.00 46.32 2.90
8613 11272 1.594862 GACAGTAATGAGATGCCGCAC 59.405 52.381 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.433716 TCAATCTCATACTGCATGACCAAAAA 59.566 34.615 0.00 0.00 38.79 1.94
30 31 6.195165 GCCGTGTCAATCTAGAAAATCAATC 58.805 40.000 0.00 0.00 0.00 2.67
31 32 5.220662 CGCCGTGTCAATCTAGAAAATCAAT 60.221 40.000 0.00 0.00 0.00 2.57
70 73 5.769662 TGAATTATCATACATCAAGCACCCC 59.230 40.000 0.00 0.00 0.00 4.95
136 140 9.283768 TGCATTATCACGAATGAATACCTAATT 57.716 29.630 0.00 0.00 38.83 1.40
160 164 1.932511 GCAATCAGCTCTAGTCACTGC 59.067 52.381 0.00 0.00 41.15 4.40
195 199 3.521126 TGATGGAGAGAAAGGGGAGAAAG 59.479 47.826 0.00 0.00 0.00 2.62
225 792 1.034838 ACGCCACACAAGCCAGAAAA 61.035 50.000 0.00 0.00 0.00 2.29
252 819 6.456795 AAAAAGCAGAAGATATAGGGTTGC 57.543 37.500 0.00 0.00 0.00 4.17
325 892 4.593597 TTTTCGTCATCGATTTACAGGC 57.406 40.909 0.00 0.00 45.65 4.85
345 930 7.170998 CGTGTACCAACAGAGAGAACTATTTTT 59.829 37.037 0.00 0.00 35.91 1.94
377 962 2.760385 GTGACGGAGAGGGAGGGG 60.760 72.222 0.00 0.00 0.00 4.79
390 975 1.838073 AAGGGGACATGGTCGGTGAC 61.838 60.000 0.00 0.00 32.65 3.67
396 983 1.745489 GCGTGAAGGGGACATGGTC 60.745 63.158 0.00 0.00 0.00 4.02
398 985 2.819595 CGCGTGAAGGGGACATGG 60.820 66.667 0.00 0.00 0.00 3.66
419 1006 2.347322 ACAGAGAGAGAGGGTGCGC 61.347 63.158 0.00 0.00 0.00 6.09
421 1008 1.136695 CATCACAGAGAGAGAGGGTGC 59.863 57.143 0.00 0.00 0.00 5.01
425 1012 1.136695 GCCACATCACAGAGAGAGAGG 59.863 57.143 0.00 0.00 0.00 3.69
427 1014 0.813821 CGCCACATCACAGAGAGAGA 59.186 55.000 0.00 0.00 0.00 3.10
431 1018 2.265739 GCCGCCACATCACAGAGA 59.734 61.111 0.00 0.00 0.00 3.10
433 1020 2.046988 CAGCCGCCACATCACAGA 60.047 61.111 0.00 0.00 0.00 3.41
436 1023 3.490759 CGACAGCCGCCACATCAC 61.491 66.667 0.00 0.00 0.00 3.06
456 2002 0.402861 TGAGGAAAGGGGACAAGGGT 60.403 55.000 0.00 0.00 0.00 4.34
469 2015 0.615331 GAGGAGGCATGTGTGAGGAA 59.385 55.000 0.00 0.00 0.00 3.36
476 2022 4.181010 CCGGGGAGGAGGCATGTG 62.181 72.222 0.00 0.00 45.00 3.21
538 2100 1.973812 GGAAGGGTGAAGCACTGGC 60.974 63.158 0.00 0.00 41.61 4.85
539 2101 0.038744 ATGGAAGGGTGAAGCACTGG 59.961 55.000 0.00 0.00 34.40 4.00
541 2103 0.038744 CCATGGAAGGGTGAAGCACT 59.961 55.000 5.56 0.00 34.40 4.40
542 2104 1.598701 GCCATGGAAGGGTGAAGCAC 61.599 60.000 18.40 0.00 42.11 4.40
543 2105 1.304381 GCCATGGAAGGGTGAAGCA 60.304 57.895 18.40 0.00 42.11 3.91
544 2106 0.899717 TTGCCATGGAAGGGTGAAGC 60.900 55.000 18.40 0.00 42.11 3.86
546 2108 0.187117 TGTTGCCATGGAAGGGTGAA 59.813 50.000 18.40 0.00 42.11 3.18
547 2109 0.539438 GTGTTGCCATGGAAGGGTGA 60.539 55.000 18.40 0.00 42.11 4.02
548 2110 0.827089 TGTGTTGCCATGGAAGGGTG 60.827 55.000 18.40 0.00 42.11 4.61
549 2111 0.827507 GTGTGTTGCCATGGAAGGGT 60.828 55.000 18.40 0.00 42.11 4.34
550 2112 0.827089 TGTGTGTTGCCATGGAAGGG 60.827 55.000 18.40 0.00 43.76 3.95
552 2114 3.507233 ACTTATGTGTGTTGCCATGGAAG 59.493 43.478 18.40 8.42 0.00 3.46
553 2115 3.255395 CACTTATGTGTGTTGCCATGGAA 59.745 43.478 18.40 0.00 39.24 3.53
554 2116 2.819019 CACTTATGTGTGTTGCCATGGA 59.181 45.455 18.40 0.00 39.24 3.41
555 2117 2.671914 GCACTTATGTGTGTTGCCATGG 60.672 50.000 7.63 7.63 45.44 3.66
556 2118 2.598589 GCACTTATGTGTGTTGCCATG 58.401 47.619 10.17 0.00 45.44 3.66
557 2119 1.199789 CGCACTTATGTGTGTTGCCAT 59.800 47.619 12.81 0.00 46.31 4.40
559 2121 3.383026 CGCACTTATGTGTGTTGCC 57.617 52.632 12.81 0.00 46.31 4.52
565 2127 1.130373 CGGCATTTCGCACTTATGTGT 59.870 47.619 10.17 0.00 45.44 3.72
566 2128 1.813896 CGGCATTTCGCACTTATGTG 58.186 50.000 4.42 4.42 45.17 3.21
589 2151 1.896660 TTGCGGAAGGGTGAAGCAC 60.897 57.895 0.00 0.00 37.57 4.40
590 2152 1.896660 GTTGCGGAAGGGTGAAGCA 60.897 57.895 0.00 0.00 35.90 3.91
591 2153 1.452145 TTGTTGCGGAAGGGTGAAGC 61.452 55.000 0.00 0.00 0.00 3.86
592 2154 0.310854 GTTGTTGCGGAAGGGTGAAG 59.689 55.000 0.00 0.00 0.00 3.02
593 2155 0.394488 TGTTGTTGCGGAAGGGTGAA 60.394 50.000 0.00 0.00 0.00 3.18
594 2156 1.098712 GTGTTGTTGCGGAAGGGTGA 61.099 55.000 0.00 0.00 0.00 4.02
595 2157 1.358759 GTGTTGTTGCGGAAGGGTG 59.641 57.895 0.00 0.00 0.00 4.61
596 2158 1.077357 TGTGTTGTTGCGGAAGGGT 60.077 52.632 0.00 0.00 0.00 4.34
597 2159 1.358759 GTGTGTTGTTGCGGAAGGG 59.641 57.895 0.00 0.00 0.00 3.95
598 2160 0.248458 GTGTGTGTTGTTGCGGAAGG 60.248 55.000 0.00 0.00 0.00 3.46
599 2161 0.449786 TGTGTGTGTTGTTGCGGAAG 59.550 50.000 0.00 0.00 0.00 3.46
600 2162 1.098869 ATGTGTGTGTTGTTGCGGAA 58.901 45.000 0.00 0.00 0.00 4.30
601 2163 1.954927 TATGTGTGTGTTGTTGCGGA 58.045 45.000 0.00 0.00 0.00 5.54
602 2164 2.032799 ACTTATGTGTGTGTTGTTGCGG 59.967 45.455 0.00 0.00 0.00 5.69
603 2165 3.035251 CACTTATGTGTGTGTTGTTGCG 58.965 45.455 0.62 0.00 39.24 4.85
604 2166 2.788786 GCACTTATGTGTGTGTTGTTGC 59.211 45.455 10.17 0.00 45.44 4.17
605 2167 3.035251 CGCACTTATGTGTGTGTTGTTG 58.965 45.455 12.81 0.00 46.31 3.33
606 2168 3.332761 CGCACTTATGTGTGTGTTGTT 57.667 42.857 12.81 0.00 46.31 2.83
614 2176 1.531149 GTGACAAGCGCACTTATGTGT 59.469 47.619 11.47 1.20 45.44 3.72
615 2177 1.530720 TGTGACAAGCGCACTTATGTG 59.469 47.619 11.47 4.42 46.37 3.21
616 2178 1.877637 TGTGACAAGCGCACTTATGT 58.122 45.000 11.47 6.33 37.18 2.29
617 2179 3.476295 AATGTGACAAGCGCACTTATG 57.524 42.857 11.47 2.69 40.33 1.90
618 2180 5.621197 TTTAATGTGACAAGCGCACTTAT 57.379 34.783 11.47 0.00 40.33 1.73
619 2181 5.425577 TTTTAATGTGACAAGCGCACTTA 57.574 34.783 11.47 0.00 40.33 2.24
620 2182 3.980646 TTTAATGTGACAAGCGCACTT 57.019 38.095 11.47 0.00 40.33 3.16
621 2183 3.853307 GCTTTTAATGTGACAAGCGCACT 60.853 43.478 11.47 0.00 40.33 4.40
622 2184 2.405025 GCTTTTAATGTGACAAGCGCAC 59.595 45.455 11.47 0.00 40.33 5.34
623 2185 2.606795 GGCTTTTAATGTGACAAGCGCA 60.607 45.455 11.47 0.00 42.22 6.09
624 2186 1.985684 GGCTTTTAATGTGACAAGCGC 59.014 47.619 0.00 0.00 42.22 5.92
625 2187 2.241722 CGGCTTTTAATGTGACAAGCG 58.758 47.619 0.00 0.00 42.22 4.68
626 2188 1.985684 GCGGCTTTTAATGTGACAAGC 59.014 47.619 0.00 0.00 40.85 4.01
627 2189 2.228822 AGGCGGCTTTTAATGTGACAAG 59.771 45.455 5.25 0.00 0.00 3.16
628 2190 2.235016 AGGCGGCTTTTAATGTGACAA 58.765 42.857 5.25 0.00 0.00 3.18
629 2191 1.904287 AGGCGGCTTTTAATGTGACA 58.096 45.000 5.25 0.00 0.00 3.58
630 2192 2.488153 AGAAGGCGGCTTTTAATGTGAC 59.512 45.455 26.25 9.34 0.00 3.67
631 2193 2.747446 GAGAAGGCGGCTTTTAATGTGA 59.253 45.455 26.25 0.00 0.00 3.58
632 2194 2.159379 GGAGAAGGCGGCTTTTAATGTG 60.159 50.000 26.25 0.00 0.00 3.21
633 2195 2.092323 GGAGAAGGCGGCTTTTAATGT 58.908 47.619 26.25 0.44 0.00 2.71
634 2196 2.369394 AGGAGAAGGCGGCTTTTAATG 58.631 47.619 26.25 0.00 0.00 1.90
635 2197 2.808906 AGGAGAAGGCGGCTTTTAAT 57.191 45.000 26.25 12.14 0.00 1.40
636 2198 2.579410 AAGGAGAAGGCGGCTTTTAA 57.421 45.000 26.25 0.00 0.00 1.52
637 2199 2.303600 TGTAAGGAGAAGGCGGCTTTTA 59.696 45.455 26.25 16.52 0.00 1.52
638 2200 1.073284 TGTAAGGAGAAGGCGGCTTTT 59.927 47.619 26.25 20.67 0.00 2.27
639 2201 0.690762 TGTAAGGAGAAGGCGGCTTT 59.309 50.000 26.25 15.15 0.00 3.51
640 2202 0.036294 GTGTAAGGAGAAGGCGGCTT 60.036 55.000 25.83 25.83 0.00 4.35
641 2203 1.192146 TGTGTAAGGAGAAGGCGGCT 61.192 55.000 5.25 5.25 0.00 5.52
642 2204 1.019805 GTGTGTAAGGAGAAGGCGGC 61.020 60.000 0.00 0.00 0.00 6.53
643 2205 0.320374 TGTGTGTAAGGAGAAGGCGG 59.680 55.000 0.00 0.00 0.00 6.13
644 2206 1.270094 TGTGTGTGTAAGGAGAAGGCG 60.270 52.381 0.00 0.00 0.00 5.52
687 2250 9.733556 TGGAGAAATTTGCAATCTAGTAGTAAA 57.266 29.630 0.00 0.00 0.00 2.01
690 2253 7.121315 GGTTGGAGAAATTTGCAATCTAGTAGT 59.879 37.037 0.00 0.00 30.98 2.73
701 2264 4.702831 TCCTTTTGGTTGGAGAAATTTGC 58.297 39.130 0.00 0.00 41.38 3.68
721 2284 6.024542 GCATCGTTTTGCAAAGATAAATCC 57.975 37.500 12.41 0.00 42.31 3.01
738 2302 2.420022 GCCTTGTTCTATTGTGCATCGT 59.580 45.455 0.00 0.00 0.00 3.73
769 2341 5.270893 TCCTTGGGTTAGTTTTTGCTTTC 57.729 39.130 0.00 0.00 0.00 2.62
781 2353 2.757894 TTGGCTGTTTCCTTGGGTTA 57.242 45.000 0.00 0.00 0.00 2.85
783 2355 1.872773 TTTTGGCTGTTTCCTTGGGT 58.127 45.000 0.00 0.00 0.00 4.51
808 2384 3.685272 CGGCCTAGTTTTCTTTCTTCTCC 59.315 47.826 0.00 0.00 0.00 3.71
849 2436 0.847758 TAGGGGGAAGGTGGGTTTCC 60.848 60.000 0.00 0.00 42.73 3.13
1443 3036 2.123251 GCCTCCTCCCCGATGAGA 60.123 66.667 3.09 0.00 34.11 3.27
1569 3162 0.903454 AGACGAGGTGGGAAACGGAT 60.903 55.000 0.00 0.00 0.00 4.18
1666 3641 6.828785 AGGGGCAAATTATTCTACTGTACTTG 59.171 38.462 0.00 0.00 0.00 3.16
1701 3676 5.833131 CCTCTGAGATAGGAGTAAGAAGCTT 59.167 44.000 6.17 0.00 36.08 3.74
1729 3704 5.657499 CGAGATAAATTAACAGTAGCGCAC 58.343 41.667 11.47 5.97 0.00 5.34
1804 3779 7.536964 TGCAACTCAAAATATACATTGAACACG 59.463 33.333 0.00 0.00 35.31 4.49
1871 3846 5.634896 CAAAACTCACATCTAACATCCAGC 58.365 41.667 0.00 0.00 0.00 4.85
1902 3877 6.483640 AGACATGAAAGACAAGTAAACACCTC 59.516 38.462 0.00 0.00 30.32 3.85
1962 3940 2.015736 ATGTGCGTCTTCAGGCTTAG 57.984 50.000 0.00 0.00 34.31 2.18
1975 3953 7.660059 CATTGAACAGATAAAGAAAATGTGCG 58.340 34.615 0.00 0.00 0.00 5.34
1984 3962 9.844790 CAGTAAATTGCATTGAACAGATAAAGA 57.155 29.630 0.00 0.00 0.00 2.52
1985 3963 9.630098 ACAGTAAATTGCATTGAACAGATAAAG 57.370 29.630 0.00 0.00 0.00 1.85
2043 4022 5.711976 CCCTCTATGTCATGGTTTGAGTTTT 59.288 40.000 0.00 0.00 34.17 2.43
2044 4023 5.014123 TCCCTCTATGTCATGGTTTGAGTTT 59.986 40.000 0.00 0.00 34.17 2.66
2046 4025 4.104086 TCCCTCTATGTCATGGTTTGAGT 58.896 43.478 0.00 0.00 34.17 3.41
2051 4030 2.703007 GAGCTCCCTCTATGTCATGGTT 59.297 50.000 0.87 0.00 35.16 3.67
2152 4131 0.773644 ACCACTGCTCAGAACCCATT 59.226 50.000 3.60 0.00 0.00 3.16
2165 4144 1.660104 GCAAAACAACAAGCACCACTG 59.340 47.619 0.00 0.00 0.00 3.66
2533 4512 3.782244 GCTGACTTGTCGCCGCTG 61.782 66.667 6.40 0.00 0.00 5.18
2578 4557 3.118775 TGTCACCCTTCCTGAATATGTCG 60.119 47.826 0.00 0.00 0.00 4.35
2749 4730 2.488937 TGTAGCAACCACAGCATCATTG 59.511 45.455 0.00 0.00 0.00 2.82
2965 4946 8.144478 GGAGCACACTAGATTGTCTATTGATTA 58.856 37.037 10.21 0.00 34.46 1.75
2983 4964 0.682209 AATGGATGGCAGGAGCACAC 60.682 55.000 0.00 0.00 44.61 3.82
2985 4966 0.743097 GAAATGGATGGCAGGAGCAC 59.257 55.000 0.00 0.00 44.61 4.40
3043 5024 6.509656 TGCAGCATGATTTTAATGAAGGATC 58.490 36.000 0.00 0.00 39.69 3.36
3063 5044 6.672147 ACAAAATTAAGTTCAGTAGCTGCAG 58.328 36.000 10.11 10.11 0.00 4.41
3065 5046 6.668323 TGACAAAATTAAGTTCAGTAGCTGC 58.332 36.000 0.00 0.00 0.00 5.25
3089 5070 7.214467 ACGAACAACAAATATCACCATTTCT 57.786 32.000 0.00 0.00 0.00 2.52
3116 5097 4.504858 AGAGTTAATACAAGGAAGCGTGG 58.495 43.478 0.00 0.00 0.00 4.94
3477 5471 3.011949 ACACAACGTGATGCAATTTCC 57.988 42.857 0.24 0.00 36.96 3.13
3957 5963 2.623418 TTTCTCTCCAGGGCTCACTA 57.377 50.000 0.00 0.00 0.00 2.74
4139 6148 3.519510 TGGGAGAGTTAGGAATCAACCTG 59.480 47.826 0.00 0.00 40.81 4.00
4140 6149 3.803340 TGGGAGAGTTAGGAATCAACCT 58.197 45.455 0.00 0.00 43.32 3.50
4161 6170 7.699878 AGGTAGGAATTGACCTGTTAAAGAAT 58.300 34.615 0.00 0.00 44.64 2.40
4375 6384 3.758023 CTGCAACATCACATAACTTCCCA 59.242 43.478 0.00 0.00 0.00 4.37
4439 6448 8.946085 ACACAATATTACACATAAGTTGGTCAG 58.054 33.333 0.00 0.00 30.06 3.51
4453 6462 5.714333 ACCATTGCCTCAACACAATATTACA 59.286 36.000 0.00 0.00 34.80 2.41
4476 6486 5.872070 TGTTCCCAAAACAAAAATGACAGAC 59.128 36.000 0.00 0.00 0.00 3.51
4578 6588 8.682710 AGTACTTTGCAAATTGAAGAAACTGTA 58.317 29.630 13.23 4.03 0.00 2.74
4588 6599 4.761739 CAGAGGGAGTACTTTGCAAATTGA 59.238 41.667 13.23 0.00 0.00 2.57
4605 6616 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
4653 6664 9.509956 ACTCTAGTGATCTAAACGCTCTTATAT 57.490 33.333 0.00 0.00 0.00 0.86
4654 6665 8.905660 ACTCTAGTGATCTAAACGCTCTTATA 57.094 34.615 0.00 0.00 0.00 0.98
4655 6666 7.811117 ACTCTAGTGATCTAAACGCTCTTAT 57.189 36.000 0.00 0.00 0.00 1.73
4656 6667 7.986320 ACTACTCTAGTGATCTAAACGCTCTTA 59.014 37.037 0.00 0.00 37.69 2.10
4657 6668 6.824704 ACTACTCTAGTGATCTAAACGCTCTT 59.175 38.462 0.00 0.00 37.69 2.85
4658 6669 6.350906 ACTACTCTAGTGATCTAAACGCTCT 58.649 40.000 0.00 0.00 37.69 4.09
4659 6670 6.607735 ACTACTCTAGTGATCTAAACGCTC 57.392 41.667 0.00 0.00 37.69 5.03
4687 6698 9.027129 GCGTACAACATGATATAAGAGTGTTTA 57.973 33.333 0.00 0.00 31.19 2.01
4688 6699 7.547722 TGCGTACAACATGATATAAGAGTGTTT 59.452 33.333 0.00 0.00 31.19 2.83
4689 6700 7.039270 TGCGTACAACATGATATAAGAGTGTT 58.961 34.615 0.00 0.00 33.63 3.32
4690 6701 6.569780 TGCGTACAACATGATATAAGAGTGT 58.430 36.000 0.00 0.00 0.00 3.55
4691 6702 7.409767 CGATGCGTACAACATGATATAAGAGTG 60.410 40.741 0.00 0.00 0.00 3.51
4692 6703 6.582672 CGATGCGTACAACATGATATAAGAGT 59.417 38.462 0.00 0.00 0.00 3.24
4693 6704 6.033937 CCGATGCGTACAACATGATATAAGAG 59.966 42.308 0.00 0.00 0.00 2.85
4694 6705 5.861787 CCGATGCGTACAACATGATATAAGA 59.138 40.000 0.00 0.00 0.00 2.10
4695 6706 5.633601 ACCGATGCGTACAACATGATATAAG 59.366 40.000 0.00 0.00 0.00 1.73
4696 6707 5.534407 ACCGATGCGTACAACATGATATAA 58.466 37.500 0.00 0.00 0.00 0.98
4697 6708 5.128992 ACCGATGCGTACAACATGATATA 57.871 39.130 0.00 0.00 0.00 0.86
4698 6709 3.990092 ACCGATGCGTACAACATGATAT 58.010 40.909 0.00 0.00 0.00 1.63
4699 6710 3.446310 ACCGATGCGTACAACATGATA 57.554 42.857 0.00 0.00 0.00 2.15
4700 6711 2.309528 ACCGATGCGTACAACATGAT 57.690 45.000 0.00 0.00 0.00 2.45
4713 6724 9.061610 GTAAACATTTTGATTGTCTAACCGATG 57.938 33.333 0.00 0.00 0.00 3.84
4717 6728 7.865385 TGCTGTAAACATTTTGATTGTCTAACC 59.135 33.333 0.00 0.00 0.00 2.85
4831 7109 2.290450 TGAACATGAGGATGAAGCAGCA 60.290 45.455 0.00 0.00 33.36 4.41
4846 7124 8.762645 TCCAGACTAGTAGATGAATTTGAACAT 58.237 33.333 3.59 0.00 0.00 2.71
5107 7386 3.316029 TGAGTCACAGAAAAAGGCACATG 59.684 43.478 0.00 0.00 0.00 3.21
5228 7510 4.940463 TGTACCCAGCATCGTTATACTTC 58.060 43.478 0.00 0.00 0.00 3.01
5249 7531 5.920273 ACTTTAGGCAACACAATTTCGATTG 59.080 36.000 0.00 0.00 41.41 2.67
5335 7625 0.239082 TGAAAAGCATGACAGCTGCG 59.761 50.000 15.27 0.69 45.89 5.18
5372 7662 8.547967 TTTCACCAAGAATCTTGTGTACTATC 57.452 34.615 20.18 0.00 35.83 2.08
5382 7672 7.218614 TGCAAAATGATTTCACCAAGAATCTT 58.781 30.769 0.00 0.00 35.83 2.40
5577 7870 7.294676 TCTTTCAGTGTTGAATCATGTATCG 57.705 36.000 0.00 0.00 42.60 2.92
5579 7872 8.571461 ACATCTTTCAGTGTTGAATCATGTAT 57.429 30.769 10.50 0.00 42.60 2.29
5625 7918 4.341806 ACATGCATTCCAGTGTTTTCTTCA 59.658 37.500 0.00 0.00 0.00 3.02
6081 8404 5.116882 AGCGTAGAGAACATGTAAAATCCC 58.883 41.667 0.00 0.00 0.00 3.85
6086 8469 5.319140 TGCTAGCGTAGAGAACATGTAAA 57.681 39.130 10.77 0.00 0.00 2.01
6096 8479 1.319541 TTAGGCCTGCTAGCGTAGAG 58.680 55.000 17.99 1.15 34.83 2.43
6125 8508 7.599998 TCTCTCATGCCTTTTAAAAAGATTTGC 59.400 33.333 1.66 0.00 0.00 3.68
6140 8523 8.219178 AGATTTCTCATAAATTCTCTCATGCCT 58.781 33.333 0.00 0.00 0.00 4.75
6251 8639 9.677567 TCATTAAGTTGCAAAAGAATCTGTTAC 57.322 29.630 0.00 0.00 0.00 2.50
6282 8670 2.821969 CCTGTTAGGCAAGCTGTCAAAT 59.178 45.455 0.00 0.00 0.00 2.32
6362 8750 6.428159 TGCTTCATCTTTTGACTAAGACTTCC 59.572 38.462 0.00 0.00 37.00 3.46
6367 8755 7.566760 TGTTTGCTTCATCTTTTGACTAAGA 57.433 32.000 0.00 0.00 38.43 2.10
6392 8780 9.712305 GGCTTTATTTACTCTGAATGCTAGATA 57.288 33.333 0.00 0.00 0.00 1.98
6395 8783 6.564873 GCGGCTTTATTTACTCTGAATGCTAG 60.565 42.308 0.00 0.00 0.00 3.42
6418 8806 5.896922 TGGTTTCATAACATTTTGTTGCG 57.103 34.783 3.22 0.00 41.30 4.85
6515 8909 4.199310 TCTGGCATTTACATTGAGGCTAC 58.801 43.478 0.00 0.00 0.00 3.58
6841 9239 3.396260 TTGTGAGGTTGCTGTAGGTAC 57.604 47.619 0.00 0.00 0.00 3.34
6879 9277 4.444449 GGAACTGGAACAAGGTCAGTAGTT 60.444 45.833 0.00 0.00 40.41 2.24
6947 9345 1.180029 AACTGCATTGCCTGATGGAC 58.820 50.000 6.12 0.00 34.57 4.02
7008 9406 3.052566 AGGATTCCCTTCCCCATTTCTTC 60.053 47.826 0.00 0.00 40.78 2.87
7043 9444 2.217510 AGAGGTCGAGCTTGAAGGTA 57.782 50.000 19.66 0.00 0.00 3.08
7084 9485 1.215673 TCCTCCATCCGAGTTAGAGCT 59.784 52.381 0.00 0.00 36.82 4.09
7107 9508 2.806244 GCGTGACTGTGAAGTTACCAAT 59.194 45.455 0.00 0.00 0.00 3.16
7191 9595 2.101415 GGAACCAAAAAGTGAAGCAGCT 59.899 45.455 0.00 0.00 0.00 4.24
7243 9647 2.337879 TTTGCTGCCTTCCGACCAGT 62.338 55.000 0.00 0.00 0.00 4.00
7368 9772 1.078848 AGCGGATGGAGCACTTGAC 60.079 57.895 0.00 0.00 37.01 3.18
7383 9787 3.997064 CTGCGAGAAGGGGTCAGCG 62.997 68.421 0.00 0.00 35.62 5.18
7413 9817 1.203441 AGGCTGATGCTGGTCCAAGA 61.203 55.000 0.00 0.00 39.59 3.02
7524 9928 0.317160 CAGGTTCTGTGGACGCACTA 59.683 55.000 0.00 0.00 0.00 2.74
7530 9934 1.388547 TTTGTGCAGGTTCTGTGGAC 58.611 50.000 0.00 0.00 36.83 4.02
7542 9946 0.812014 TCGTCGCTCCTTTTTGTGCA 60.812 50.000 0.00 0.00 0.00 4.57
7557 9961 1.664151 CTATGGCCCTTTTTCGTCGTC 59.336 52.381 0.00 0.00 0.00 4.20
7720 10125 0.329261 CAGGACCATCTTGGGAGCAA 59.671 55.000 0.00 0.00 43.37 3.91
7724 10129 0.698238 CCAACAGGACCATCTTGGGA 59.302 55.000 0.00 0.00 43.37 4.37
7737 10142 3.476552 TCAAGTAGCCTTTCACCAACAG 58.523 45.455 0.00 0.00 0.00 3.16
7741 10146 3.869912 GCTGATCAAGTAGCCTTTCACCA 60.870 47.826 0.00 0.00 33.89 4.17
7748 10153 1.209019 CCTGTGCTGATCAAGTAGCCT 59.791 52.381 0.00 0.00 39.15 4.58
7769 10188 0.107897 ATCCAAATACACCGCTCGCA 60.108 50.000 0.00 0.00 0.00 5.10
7787 10207 2.076863 GTAGTGCCTTGCGACTCAAAT 58.923 47.619 0.00 0.00 33.65 2.32
7805 10225 2.176247 CCAGCTAGGAGGGAAAGGTA 57.824 55.000 0.00 0.00 41.22 3.08
7850 10273 3.656045 CACCCCGCAAACACGTCC 61.656 66.667 0.00 0.00 0.00 4.79
7858 10281 0.178975 ACAGGAAAATCACCCCGCAA 60.179 50.000 0.00 0.00 0.00 4.85
7887 10310 4.574013 ACAAAGAAAATTTTGCCATGCGAA 59.426 33.333 8.47 0.00 40.80 4.70
7888 10311 4.125703 ACAAAGAAAATTTTGCCATGCGA 58.874 34.783 8.47 0.00 40.80 5.10
7908 10331 4.070009 ACATGTACACACTAGTCTCGACA 58.930 43.478 0.00 0.00 0.00 4.35
7909 10332 4.083431 ACACATGTACACACTAGTCTCGAC 60.083 45.833 0.00 0.00 0.00 4.20
7911 10334 4.421033 ACACATGTACACACTAGTCTCG 57.579 45.455 0.00 0.00 0.00 4.04
7940 10367 8.523915 ACCATCATGTACAAATTACACATCAT 57.476 30.769 0.00 0.00 30.59 2.45
7962 10402 0.179067 AAAACGACGCTTCTGGACCA 60.179 50.000 0.00 0.00 0.00 4.02
7976 10416 0.512952 CCTCCGAGCTGAACAAAACG 59.487 55.000 0.00 0.00 0.00 3.60
7998 10438 3.181429 ACATCAAACATCAACTGACCCCT 60.181 43.478 0.00 0.00 0.00 4.79
7999 10439 3.157087 ACATCAAACATCAACTGACCCC 58.843 45.455 0.00 0.00 0.00 4.95
8003 10443 8.134895 GGTAAAAGAACATCAAACATCAACTGA 58.865 33.333 0.00 0.00 0.00 3.41
8004 10444 7.382218 GGGTAAAAGAACATCAAACATCAACTG 59.618 37.037 0.00 0.00 0.00 3.16
8008 10464 6.968263 TGGGTAAAAGAACATCAAACATCA 57.032 33.333 0.00 0.00 0.00 3.07
8065 10522 9.813080 GAATTGACAACACAGTATTTCTAGTTC 57.187 33.333 0.00 0.00 0.00 3.01
8095 10555 4.752146 ACTTTTATTCCGTCCGGTTCTAG 58.248 43.478 0.00 0.74 36.47 2.43
8133 10595 0.618458 GGGGGCACAACATGTCTCTA 59.382 55.000 0.00 0.00 32.06 2.43
8148 10610 2.309136 AAAGGTTCACATCAAGGGGG 57.691 50.000 0.00 0.00 0.00 5.40
8149 10611 3.500343 AGAAAAGGTTCACATCAAGGGG 58.500 45.455 0.00 0.00 36.09 4.79
8151 10613 6.479990 GGAAAAAGAAAAGGTTCACATCAAGG 59.520 38.462 0.00 0.00 36.09 3.61
8154 10616 6.790232 AGGAAAAAGAAAAGGTTCACATCA 57.210 33.333 0.00 0.00 36.09 3.07
8163 10625 4.769688 ACCAAGCAAGGAAAAAGAAAAGG 58.230 39.130 1.01 0.00 0.00 3.11
8164 10626 6.741992 AAACCAAGCAAGGAAAAAGAAAAG 57.258 33.333 1.01 0.00 0.00 2.27
8188 10650 7.066645 CCACTTCTTTCATCTCTATCATGCAAA 59.933 37.037 0.00 0.00 0.00 3.68
8189 10651 6.541278 CCACTTCTTTCATCTCTATCATGCAA 59.459 38.462 0.00 0.00 0.00 4.08
8193 10655 6.590068 CACCCACTTCTTTCATCTCTATCAT 58.410 40.000 0.00 0.00 0.00 2.45
8194 10656 5.627735 GCACCCACTTCTTTCATCTCTATCA 60.628 44.000 0.00 0.00 0.00 2.15
8195 10657 4.813697 GCACCCACTTCTTTCATCTCTATC 59.186 45.833 0.00 0.00 0.00 2.08
8196 10658 4.384647 GGCACCCACTTCTTTCATCTCTAT 60.385 45.833 0.00 0.00 0.00 1.98
8197 10659 3.055094 GGCACCCACTTCTTTCATCTCTA 60.055 47.826 0.00 0.00 0.00 2.43
8198 10660 2.290577 GGCACCCACTTCTTTCATCTCT 60.291 50.000 0.00 0.00 0.00 3.10
8200 10662 1.707427 AGGCACCCACTTCTTTCATCT 59.293 47.619 0.00 0.00 0.00 2.90
8201 10663 2.087646 GAGGCACCCACTTCTTTCATC 58.912 52.381 0.00 0.00 0.00 2.92
8202 10664 1.611673 CGAGGCACCCACTTCTTTCAT 60.612 52.381 0.00 0.00 0.00 2.57
8203 10665 0.250295 CGAGGCACCCACTTCTTTCA 60.250 55.000 0.00 0.00 0.00 2.69
8204 10666 1.578206 GCGAGGCACCCACTTCTTTC 61.578 60.000 0.00 0.00 0.00 2.62
8206 10668 2.032681 GCGAGGCACCCACTTCTT 59.967 61.111 0.00 0.00 0.00 2.52
8207 10669 4.021925 GGCGAGGCACCCACTTCT 62.022 66.667 0.00 0.00 0.00 2.85
8218 10680 4.778143 CGGTTTGGAGGGGCGAGG 62.778 72.222 0.00 0.00 0.00 4.63
8219 10681 3.248446 TTCGGTTTGGAGGGGCGAG 62.248 63.158 0.00 0.00 0.00 5.03
8221 10683 2.175035 TAGTTCGGTTTGGAGGGGCG 62.175 60.000 0.00 0.00 0.00 6.13
8222 10684 0.392595 CTAGTTCGGTTTGGAGGGGC 60.393 60.000 0.00 0.00 0.00 5.80
8223 10685 0.252197 CCTAGTTCGGTTTGGAGGGG 59.748 60.000 0.00 0.00 0.00 4.79
8224 10686 1.272807 TCCTAGTTCGGTTTGGAGGG 58.727 55.000 0.00 0.00 0.00 4.30
8225 10687 2.766828 AGATCCTAGTTCGGTTTGGAGG 59.233 50.000 0.00 0.00 0.00 4.30
8226 10688 3.702045 AGAGATCCTAGTTCGGTTTGGAG 59.298 47.826 0.00 0.00 0.00 3.86
8227 10689 3.709587 AGAGATCCTAGTTCGGTTTGGA 58.290 45.455 0.00 0.00 0.00 3.53
8228 10690 4.645588 AGTAGAGATCCTAGTTCGGTTTGG 59.354 45.833 0.00 0.00 0.00 3.28
8229 10691 5.838531 AGTAGAGATCCTAGTTCGGTTTG 57.161 43.478 0.00 0.00 0.00 2.93
8230 10692 5.532032 GCTAGTAGAGATCCTAGTTCGGTTT 59.468 44.000 0.00 0.00 34.45 3.27
8231 10693 5.065235 GCTAGTAGAGATCCTAGTTCGGTT 58.935 45.833 0.00 0.00 34.45 4.44
8232 10694 4.102838 TGCTAGTAGAGATCCTAGTTCGGT 59.897 45.833 0.00 0.00 34.45 4.69
8233 10695 4.643463 TGCTAGTAGAGATCCTAGTTCGG 58.357 47.826 0.00 0.00 34.45 4.30
8234 10696 5.761234 ACTTGCTAGTAGAGATCCTAGTTCG 59.239 44.000 0.00 0.00 34.45 3.95
8254 10716 6.454583 CCGCATGAATGAATTAGCAAAACTTG 60.455 38.462 0.00 0.00 0.00 3.16
8255 10717 5.577945 CCGCATGAATGAATTAGCAAAACTT 59.422 36.000 0.00 0.00 0.00 2.66
8256 10718 5.104374 CCGCATGAATGAATTAGCAAAACT 58.896 37.500 0.00 0.00 0.00 2.66
8258 10720 5.070770 ACCGCATGAATGAATTAGCAAAA 57.929 34.783 0.00 0.00 0.00 2.44
8259 10721 4.717233 ACCGCATGAATGAATTAGCAAA 57.283 36.364 0.00 0.00 0.00 3.68
8262 10724 3.815401 ACCTACCGCATGAATGAATTAGC 59.185 43.478 0.00 0.00 0.00 3.09
8264 10726 4.055360 CGACCTACCGCATGAATGAATTA 58.945 43.478 0.00 0.00 0.00 1.40
8265 10727 2.872245 CGACCTACCGCATGAATGAATT 59.128 45.455 0.00 0.00 0.00 2.17
8266 10728 2.483876 CGACCTACCGCATGAATGAAT 58.516 47.619 0.00 0.00 0.00 2.57
8267 10729 1.934589 CGACCTACCGCATGAATGAA 58.065 50.000 0.00 0.00 0.00 2.57
8268 10730 3.659850 CGACCTACCGCATGAATGA 57.340 52.632 0.00 0.00 0.00 2.57
8277 10739 1.210931 TCGTTTGAGCGACCTACCG 59.789 57.895 0.00 0.00 35.83 4.02
8284 10746 0.933047 CTCGTGTGTCGTTTGAGCGA 60.933 55.000 0.00 0.00 40.80 4.93
8285 10747 1.482955 CTCGTGTGTCGTTTGAGCG 59.517 57.895 0.00 0.00 40.80 5.03
8286 10748 0.596600 TCCTCGTGTGTCGTTTGAGC 60.597 55.000 0.00 0.00 40.80 4.26
8287 10749 1.847818 TTCCTCGTGTGTCGTTTGAG 58.152 50.000 0.00 0.00 40.80 3.02
8289 10751 3.001838 TGATTTTCCTCGTGTGTCGTTTG 59.998 43.478 0.00 0.00 40.80 2.93
8291 10753 2.800544 CTGATTTTCCTCGTGTGTCGTT 59.199 45.455 0.00 0.00 40.80 3.85
8293 10755 1.126846 GCTGATTTTCCTCGTGTGTCG 59.873 52.381 0.00 0.00 41.41 4.35
8294 10756 1.464997 GGCTGATTTTCCTCGTGTGTC 59.535 52.381 0.00 0.00 0.00 3.67
8295 10757 1.523758 GGCTGATTTTCCTCGTGTGT 58.476 50.000 0.00 0.00 0.00 3.72
8296 10758 0.443869 CGGCTGATTTTCCTCGTGTG 59.556 55.000 0.00 0.00 0.00 3.82
8298 10760 1.927174 CTACGGCTGATTTTCCTCGTG 59.073 52.381 0.00 0.00 32.94 4.35
8299 10761 1.134788 CCTACGGCTGATTTTCCTCGT 60.135 52.381 0.00 0.00 35.07 4.18
8300 10762 1.134788 ACCTACGGCTGATTTTCCTCG 60.135 52.381 0.00 0.00 0.00 4.63
8301 10763 2.093658 TGACCTACGGCTGATTTTCCTC 60.094 50.000 0.00 0.00 0.00 3.71
8304 10766 1.666189 GCTGACCTACGGCTGATTTTC 59.334 52.381 0.00 0.00 46.39 2.29
8305 10767 1.739067 GCTGACCTACGGCTGATTTT 58.261 50.000 0.00 0.00 46.39 1.82
8306 10768 3.460648 GCTGACCTACGGCTGATTT 57.539 52.632 0.00 0.00 46.39 2.17
8313 10775 5.354234 ACTTTTTATGATTGCTGACCTACGG 59.646 40.000 0.00 0.00 0.00 4.02
8315 10777 6.092259 ACGACTTTTTATGATTGCTGACCTAC 59.908 38.462 0.00 0.00 0.00 3.18
8316 10778 6.092122 CACGACTTTTTATGATTGCTGACCTA 59.908 38.462 0.00 0.00 0.00 3.08
8317 10779 5.003804 ACGACTTTTTATGATTGCTGACCT 58.996 37.500 0.00 0.00 0.00 3.85
8318 10780 5.088739 CACGACTTTTTATGATTGCTGACC 58.911 41.667 0.00 0.00 0.00 4.02
8320 10782 5.000591 TCCACGACTTTTTATGATTGCTGA 58.999 37.500 0.00 0.00 0.00 4.26
8321 10783 5.295431 TCCACGACTTTTTATGATTGCTG 57.705 39.130 0.00 0.00 0.00 4.41
8322 10784 5.619981 GCTTCCACGACTTTTTATGATTGCT 60.620 40.000 0.00 0.00 0.00 3.91
8324 10786 5.698832 TGCTTCCACGACTTTTTATGATTG 58.301 37.500 0.00 0.00 0.00 2.67
8325 10787 5.957842 TGCTTCCACGACTTTTTATGATT 57.042 34.783 0.00 0.00 0.00 2.57
8327 10789 5.759506 TTTGCTTCCACGACTTTTTATGA 57.240 34.783 0.00 0.00 0.00 2.15
8328 10790 6.526674 GGTATTTGCTTCCACGACTTTTTATG 59.473 38.462 0.00 0.00 0.00 1.90
8330 10792 5.048573 GGGTATTTGCTTCCACGACTTTTTA 60.049 40.000 0.00 0.00 0.00 1.52
8331 10793 4.261867 GGGTATTTGCTTCCACGACTTTTT 60.262 41.667 0.00 0.00 0.00 1.94
8332 10794 3.254903 GGGTATTTGCTTCCACGACTTTT 59.745 43.478 0.00 0.00 0.00 2.27
8333 10795 2.817844 GGGTATTTGCTTCCACGACTTT 59.182 45.455 0.00 0.00 0.00 2.66
8336 10798 1.816074 TGGGTATTTGCTTCCACGAC 58.184 50.000 0.00 0.00 0.00 4.34
8337 10799 2.799126 ATGGGTATTTGCTTCCACGA 57.201 45.000 0.00 0.00 31.48 4.35
8339 10801 8.232913 TCTTAATTATGGGTATTTGCTTCCAC 57.767 34.615 0.00 0.00 31.48 4.02
8340 10802 8.859090 CATCTTAATTATGGGTATTTGCTTCCA 58.141 33.333 0.00 0.00 0.00 3.53
8341 10803 8.860088 ACATCTTAATTATGGGTATTTGCTTCC 58.140 33.333 0.00 0.00 0.00 3.46
8345 10807 9.297037 AGGTACATCTTAATTATGGGTATTTGC 57.703 33.333 0.00 0.00 0.00 3.68
8348 10810 9.177927 TGGAGGTACATCTTAATTATGGGTATT 57.822 33.333 7.56 0.00 0.00 1.89
8349 10811 8.603304 GTGGAGGTACATCTTAATTATGGGTAT 58.397 37.037 7.56 0.00 0.00 2.73
8350 10812 7.792736 AGTGGAGGTACATCTTAATTATGGGTA 59.207 37.037 7.56 0.80 0.00 3.69
8351 10813 6.619852 AGTGGAGGTACATCTTAATTATGGGT 59.380 38.462 7.56 1.59 0.00 4.51
8352 10814 7.079451 AGTGGAGGTACATCTTAATTATGGG 57.921 40.000 7.56 0.00 0.00 4.00
8356 10818 9.670442 AGGAATAGTGGAGGTACATCTTAATTA 57.330 33.333 7.56 0.00 0.00 1.40
8358 10820 8.568617 AAGGAATAGTGGAGGTACATCTTAAT 57.431 34.615 7.56 0.00 0.00 1.40
8359 10821 7.989947 AAGGAATAGTGGAGGTACATCTTAA 57.010 36.000 7.56 0.00 0.00 1.85
8361 10823 6.893020 AAAGGAATAGTGGAGGTACATCTT 57.107 37.500 7.56 0.00 0.00 2.40
8362 10824 6.893020 AAAAGGAATAGTGGAGGTACATCT 57.107 37.500 7.56 0.00 0.00 2.90
8388 11041 7.095187 GGGTAATTTGACACAACAACAACAAAA 60.095 33.333 0.00 0.00 32.51 2.44
8389 11042 6.369065 GGGTAATTTGACACAACAACAACAAA 59.631 34.615 0.00 0.00 0.00 2.83
8390 11043 5.869888 GGGTAATTTGACACAACAACAACAA 59.130 36.000 0.00 0.00 0.00 2.83
8391 11044 5.411781 GGGTAATTTGACACAACAACAACA 58.588 37.500 0.00 0.00 0.00 3.33
8392 11045 4.806775 GGGGTAATTTGACACAACAACAAC 59.193 41.667 0.00 0.00 0.00 3.32
8393 11046 4.141914 GGGGGTAATTTGACACAACAACAA 60.142 41.667 0.00 0.00 0.00 2.83
8394 11047 3.385111 GGGGGTAATTTGACACAACAACA 59.615 43.478 0.00 0.00 0.00 3.33
8395 11048 3.385111 TGGGGGTAATTTGACACAACAAC 59.615 43.478 0.00 0.00 0.00 3.32
8396 11049 3.643237 TGGGGGTAATTTGACACAACAA 58.357 40.909 0.00 0.00 0.00 2.83
8397 11050 3.314307 TGGGGGTAATTTGACACAACA 57.686 42.857 0.00 0.00 0.00 3.33
8398 11051 5.220970 CGATATGGGGGTAATTTGACACAAC 60.221 44.000 0.00 0.00 0.00 3.32
8399 11052 4.884744 CGATATGGGGGTAATTTGACACAA 59.115 41.667 0.00 0.00 0.00 3.33
8400 11053 4.080243 ACGATATGGGGGTAATTTGACACA 60.080 41.667 0.00 0.00 0.00 3.72
8401 11054 4.274950 CACGATATGGGGGTAATTTGACAC 59.725 45.833 0.00 0.00 0.00 3.67
8402 11055 4.080243 ACACGATATGGGGGTAATTTGACA 60.080 41.667 0.00 0.00 0.00 3.58
8403 11056 4.274950 CACACGATATGGGGGTAATTTGAC 59.725 45.833 0.00 0.00 0.00 3.18
8404 11057 4.164413 TCACACGATATGGGGGTAATTTGA 59.836 41.667 0.00 0.00 29.82 2.69
8405 11058 4.274950 GTCACACGATATGGGGGTAATTTG 59.725 45.833 0.00 0.00 29.82 2.32
8406 11059 4.165372 AGTCACACGATATGGGGGTAATTT 59.835 41.667 0.00 0.00 29.82 1.82
8414 11067 6.918892 TCAAATTAAGTCACACGATATGGG 57.081 37.500 0.00 0.00 0.00 4.00
8458 11116 0.874390 GTTGAAGCTTGCATGGTCGA 59.126 50.000 2.10 0.00 0.00 4.20
8579 11238 4.675190 TTACTGTCTACTGCAGTACGTC 57.325 45.455 22.67 15.44 45.62 4.34
8586 11245 4.442052 GGCATCTCATTACTGTCTACTGCA 60.442 45.833 0.00 0.00 0.00 4.41
8607 11266 2.383527 CGTCTTCTTCCTGTGCGGC 61.384 63.158 0.00 0.00 0.00 6.53
8613 11272 1.920574 CATACGCACGTCTTCTTCCTG 59.079 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.