Multiple sequence alignment - TraesCS3B01G455900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G455900 chr3B 100.000 4343 0 0 1 4343 697477250 697472908 0.000000e+00 8021.0
1 TraesCS3B01G455900 chr3B 90.997 311 26 2 9 318 715963150 715963459 6.720000e-113 418.0
2 TraesCS3B01G455900 chr3A 91.053 3968 209 64 477 4343 661980841 661976919 0.000000e+00 5227.0
3 TraesCS3B01G455900 chr3D 94.037 3270 144 21 436 3691 527553226 527556458 0.000000e+00 4911.0
4 TraesCS3B01G455900 chr3D 84.352 671 53 29 3697 4343 527556500 527557142 1.030000e-170 610.0
5 TraesCS3B01G455900 chr5D 88.610 878 65 12 1531 2405 545452302 545451457 0.000000e+00 1035.0
6 TraesCS3B01G455900 chr5B 93.333 120 8 0 1 120 77767513 77767394 1.240000e-40 178.0
7 TraesCS3B01G455900 chr5B 91.954 87 7 0 235 321 77767114 77767028 5.900000e-24 122.0
8 TraesCS3B01G455900 chr1A 74.409 254 50 12 68 309 568722960 568722710 1.290000e-15 95.3
9 TraesCS3B01G455900 chr1A 93.878 49 1 2 264 311 17877169 17877216 6.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G455900 chr3B 697472908 697477250 4342 True 8021.0 8021 100.0000 1 4343 1 chr3B.!!$R1 4342
1 TraesCS3B01G455900 chr3A 661976919 661980841 3922 True 5227.0 5227 91.0530 477 4343 1 chr3A.!!$R1 3866
2 TraesCS3B01G455900 chr3D 527553226 527557142 3916 False 2760.5 4911 89.1945 436 4343 2 chr3D.!!$F1 3907
3 TraesCS3B01G455900 chr5D 545451457 545452302 845 True 1035.0 1035 88.6100 1531 2405 1 chr5D.!!$R1 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 719 0.033920 ACGGGAGTAACGAACAACCC 59.966 55.000 13.37 13.37 44.60 4.11 F
1902 1936 1.266175 CCGTACTATCTCGACGCCATT 59.734 52.381 0.00 0.00 35.28 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1957 1.376424 AACGATGCCAGCCTCTGTG 60.376 57.895 0.00 0.0 0.00 3.66 R
3703 3828 0.107456 GAGCATCACCGTGGATGGAT 59.893 55.000 13.43 0.0 43.85 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.715871 TGGAACAAGTTGCGATGGA 57.284 47.368 1.81 0.00 31.92 3.41
30 31 1.522668 TGGAACAAGTTGCGATGGAG 58.477 50.000 1.81 0.00 31.92 3.86
31 32 0.804989 GGAACAAGTTGCGATGGAGG 59.195 55.000 1.81 0.00 0.00 4.30
32 33 1.610624 GGAACAAGTTGCGATGGAGGA 60.611 52.381 1.81 0.00 0.00 3.71
33 34 1.464997 GAACAAGTTGCGATGGAGGAC 59.535 52.381 1.81 0.00 0.00 3.85
34 35 0.687354 ACAAGTTGCGATGGAGGACT 59.313 50.000 1.81 0.00 0.00 3.85
35 36 1.072331 ACAAGTTGCGATGGAGGACTT 59.928 47.619 1.81 0.00 0.00 3.01
36 37 2.154462 CAAGTTGCGATGGAGGACTTT 58.846 47.619 0.00 0.00 0.00 2.66
37 38 3.244422 ACAAGTTGCGATGGAGGACTTTA 60.244 43.478 1.81 0.00 0.00 1.85
38 39 2.973945 AGTTGCGATGGAGGACTTTAC 58.026 47.619 0.00 0.00 0.00 2.01
39 40 2.007608 GTTGCGATGGAGGACTTTACC 58.992 52.381 0.00 0.00 0.00 2.85
40 41 1.271856 TGCGATGGAGGACTTTACCA 58.728 50.000 0.00 0.00 38.09 3.25
41 42 1.207089 TGCGATGGAGGACTTTACCAG 59.793 52.381 0.00 0.00 37.12 4.00
42 43 1.941325 CGATGGAGGACTTTACCAGC 58.059 55.000 0.00 0.00 37.12 4.85
43 44 1.473434 CGATGGAGGACTTTACCAGCC 60.473 57.143 0.00 0.00 36.86 4.85
44 45 0.541863 ATGGAGGACTTTACCAGCCG 59.458 55.000 0.00 0.00 37.12 5.52
45 46 1.449778 GGAGGACTTTACCAGCCGC 60.450 63.158 0.00 0.00 0.00 6.53
46 47 1.449778 GAGGACTTTACCAGCCGCC 60.450 63.158 0.00 0.00 0.00 6.13
47 48 2.180159 GAGGACTTTACCAGCCGCCA 62.180 60.000 0.00 0.00 0.00 5.69
48 49 1.302993 GGACTTTACCAGCCGCCAA 60.303 57.895 0.00 0.00 0.00 4.52
49 50 1.583495 GGACTTTACCAGCCGCCAAC 61.583 60.000 0.00 0.00 0.00 3.77
50 51 1.583495 GACTTTACCAGCCGCCAACC 61.583 60.000 0.00 0.00 0.00 3.77
51 52 1.602323 CTTTACCAGCCGCCAACCA 60.602 57.895 0.00 0.00 0.00 3.67
52 53 1.862602 CTTTACCAGCCGCCAACCAC 61.863 60.000 0.00 0.00 0.00 4.16
53 54 3.853698 TTACCAGCCGCCAACCACC 62.854 63.158 0.00 0.00 0.00 4.61
76 77 4.400109 GGTGCTCGCTCGACACGA 62.400 66.667 5.74 5.74 38.02 4.35
77 78 2.202492 GTGCTCGCTCGACACGAT 60.202 61.111 6.28 0.00 39.12 3.73
78 79 2.100410 TGCTCGCTCGACACGATC 59.900 61.111 6.28 3.57 39.12 3.69
88 89 3.441246 GACACGATCGTCGAGGATC 57.559 57.895 29.52 29.52 43.74 3.36
89 90 0.656259 GACACGATCGTCGAGGATCA 59.344 55.000 34.60 8.01 43.74 2.92
90 91 1.063616 GACACGATCGTCGAGGATCAA 59.936 52.381 34.60 7.67 43.74 2.57
91 92 1.471287 ACACGATCGTCGAGGATCAAA 59.529 47.619 34.60 7.32 43.74 2.69
92 93 2.112522 CACGATCGTCGAGGATCAAAG 58.887 52.381 34.60 25.05 43.74 2.77
93 94 1.065701 ACGATCGTCGAGGATCAAAGG 59.934 52.381 34.60 24.78 43.74 3.11
94 95 1.333931 CGATCGTCGAGGATCAAAGGA 59.666 52.381 34.60 5.31 43.74 3.36
95 96 2.603412 CGATCGTCGAGGATCAAAGGAG 60.603 54.545 34.60 20.39 43.74 3.69
96 97 1.835494 TCGTCGAGGATCAAAGGAGT 58.165 50.000 3.17 0.00 33.17 3.85
97 98 2.995283 TCGTCGAGGATCAAAGGAGTA 58.005 47.619 3.17 0.00 33.17 2.59
98 99 2.943690 TCGTCGAGGATCAAAGGAGTAG 59.056 50.000 3.17 0.00 33.17 2.57
99 100 2.541999 CGTCGAGGATCAAAGGAGTAGC 60.542 54.545 0.00 0.00 33.17 3.58
100 101 2.032620 TCGAGGATCAAAGGAGTAGCC 58.967 52.381 0.00 0.00 33.17 3.93
101 102 2.035632 CGAGGATCAAAGGAGTAGCCT 58.964 52.381 0.00 0.00 42.53 4.58
102 103 2.035321 CGAGGATCAAAGGAGTAGCCTC 59.965 54.545 0.00 0.00 40.41 4.70
103 104 3.304829 GAGGATCAAAGGAGTAGCCTCT 58.695 50.000 0.00 0.00 40.41 3.69
104 105 3.709141 GAGGATCAAAGGAGTAGCCTCTT 59.291 47.826 0.00 0.00 40.41 2.85
105 106 4.202212 GAGGATCAAAGGAGTAGCCTCTTC 60.202 50.000 0.00 0.00 40.41 2.87
106 107 6.394463 GAGGATCAAAGGAGTAGCCTCTTCT 61.394 48.000 0.00 0.00 40.41 2.85
107 108 7.817900 GAGGATCAAAGGAGTAGCCTCTTCTT 61.818 46.154 0.00 0.00 40.41 2.52
108 109 9.509278 GAGGATCAAAGGAGTAGCCTCTTCTTC 62.509 48.148 0.00 0.00 40.41 2.87
111 112 3.748645 AGGAGTAGCCTCTTCTTCTGA 57.251 47.619 0.00 0.00 46.97 3.27
112 113 4.264373 AGGAGTAGCCTCTTCTTCTGAT 57.736 45.455 0.00 0.00 46.97 2.90
113 114 5.396057 AGGAGTAGCCTCTTCTTCTGATA 57.604 43.478 0.00 0.00 46.97 2.15
114 115 5.964288 AGGAGTAGCCTCTTCTTCTGATAT 58.036 41.667 0.00 0.00 46.97 1.63
115 116 5.774690 AGGAGTAGCCTCTTCTTCTGATATG 59.225 44.000 0.00 0.00 46.97 1.78
116 117 5.538433 GGAGTAGCCTCTTCTTCTGATATGT 59.462 44.000 0.00 0.00 37.86 2.29
117 118 6.294508 GGAGTAGCCTCTTCTTCTGATATGTC 60.295 46.154 0.00 0.00 37.86 3.06
118 119 4.582701 AGCCTCTTCTTCTGATATGTCG 57.417 45.455 0.00 0.00 0.00 4.35
119 120 4.211125 AGCCTCTTCTTCTGATATGTCGA 58.789 43.478 0.00 0.00 0.00 4.20
120 121 4.278170 AGCCTCTTCTTCTGATATGTCGAG 59.722 45.833 0.00 0.00 0.00 4.04
121 122 4.037446 GCCTCTTCTTCTGATATGTCGAGT 59.963 45.833 0.00 0.00 0.00 4.18
122 123 5.451242 GCCTCTTCTTCTGATATGTCGAGTT 60.451 44.000 0.00 0.00 0.00 3.01
123 124 6.568869 CCTCTTCTTCTGATATGTCGAGTTT 58.431 40.000 0.00 0.00 0.00 2.66
124 125 7.682261 GCCTCTTCTTCTGATATGTCGAGTTTA 60.682 40.741 0.00 0.00 0.00 2.01
125 126 7.646130 CCTCTTCTTCTGATATGTCGAGTTTAC 59.354 40.741 0.00 0.00 0.00 2.01
126 127 7.481642 TCTTCTTCTGATATGTCGAGTTTACC 58.518 38.462 0.00 0.00 0.00 2.85
127 128 7.339721 TCTTCTTCTGATATGTCGAGTTTACCT 59.660 37.037 0.00 0.00 0.00 3.08
128 129 8.515695 TTCTTCTGATATGTCGAGTTTACCTA 57.484 34.615 0.00 0.00 0.00 3.08
129 130 8.155821 TCTTCTGATATGTCGAGTTTACCTAG 57.844 38.462 0.00 0.00 0.00 3.02
130 131 6.879276 TCTGATATGTCGAGTTTACCTAGG 57.121 41.667 7.41 7.41 0.00 3.02
131 132 5.768662 TCTGATATGTCGAGTTTACCTAGGG 59.231 44.000 14.81 0.00 0.00 3.53
132 133 4.280174 TGATATGTCGAGTTTACCTAGGGC 59.720 45.833 14.81 0.11 0.00 5.19
133 134 2.226962 TGTCGAGTTTACCTAGGGCT 57.773 50.000 14.81 5.43 0.00 5.19
134 135 2.532843 TGTCGAGTTTACCTAGGGCTT 58.467 47.619 14.81 0.00 0.00 4.35
135 136 2.494870 TGTCGAGTTTACCTAGGGCTTC 59.505 50.000 14.81 2.57 0.00 3.86
136 137 2.105766 TCGAGTTTACCTAGGGCTTCC 58.894 52.381 14.81 0.00 0.00 3.46
137 138 2.108970 CGAGTTTACCTAGGGCTTCCT 58.891 52.381 14.81 1.70 44.52 3.36
138 139 2.101082 CGAGTTTACCTAGGGCTTCCTC 59.899 54.545 14.81 10.19 41.96 3.71
139 140 2.435069 GAGTTTACCTAGGGCTTCCTCC 59.565 54.545 14.81 0.00 41.96 4.30
140 141 2.193993 GTTTACCTAGGGCTTCCTCCA 58.806 52.381 14.81 0.00 41.96 3.86
141 142 2.170817 GTTTACCTAGGGCTTCCTCCAG 59.829 54.545 14.81 0.00 41.96 3.86
142 143 1.016415 TACCTAGGGCTTCCTCCAGT 58.984 55.000 14.81 0.00 41.96 4.00
143 144 0.119358 ACCTAGGGCTTCCTCCAGTT 59.881 55.000 14.81 0.00 41.96 3.16
144 145 1.290134 CCTAGGGCTTCCTCCAGTTT 58.710 55.000 0.00 0.00 41.96 2.66
145 146 1.210722 CCTAGGGCTTCCTCCAGTTTC 59.789 57.143 0.00 0.00 41.96 2.78
146 147 2.192263 CTAGGGCTTCCTCCAGTTTCT 58.808 52.381 0.00 0.00 41.96 2.52
147 148 1.450360 AGGGCTTCCTCCAGTTTCTT 58.550 50.000 0.00 0.00 35.60 2.52
148 149 1.352687 AGGGCTTCCTCCAGTTTCTTC 59.647 52.381 0.00 0.00 35.60 2.87
149 150 1.614583 GGGCTTCCTCCAGTTTCTTCC 60.615 57.143 0.00 0.00 0.00 3.46
150 151 1.352687 GGCTTCCTCCAGTTTCTTCCT 59.647 52.381 0.00 0.00 0.00 3.36
151 152 2.224892 GGCTTCCTCCAGTTTCTTCCTT 60.225 50.000 0.00 0.00 0.00 3.36
152 153 2.816672 GCTTCCTCCAGTTTCTTCCTTG 59.183 50.000 0.00 0.00 0.00 3.61
153 154 2.568623 TCCTCCAGTTTCTTCCTTGC 57.431 50.000 0.00 0.00 0.00 4.01
154 155 1.774254 TCCTCCAGTTTCTTCCTTGCA 59.226 47.619 0.00 0.00 0.00 4.08
155 156 2.157738 CCTCCAGTTTCTTCCTTGCAG 58.842 52.381 0.00 0.00 0.00 4.41
156 157 1.538950 CTCCAGTTTCTTCCTTGCAGC 59.461 52.381 0.00 0.00 0.00 5.25
157 158 0.239347 CCAGTTTCTTCCTTGCAGCG 59.761 55.000 0.00 0.00 0.00 5.18
158 159 0.386478 CAGTTTCTTCCTTGCAGCGC 60.386 55.000 0.00 0.00 0.00 5.92
159 160 1.441016 GTTTCTTCCTTGCAGCGCG 60.441 57.895 0.00 0.00 0.00 6.86
160 161 3.254014 TTTCTTCCTTGCAGCGCGC 62.254 57.895 26.66 26.66 42.89 6.86
161 162 4.687215 TCTTCCTTGCAGCGCGCT 62.687 61.111 31.32 31.32 43.06 5.92
162 163 4.157958 CTTCCTTGCAGCGCGCTC 62.158 66.667 34.28 25.22 43.06 5.03
220 221 2.441532 CCCTGGGCAGCCATCTTG 60.442 66.667 15.19 0.00 0.00 3.02
221 222 3.145551 CCTGGGCAGCCATCTTGC 61.146 66.667 15.19 0.00 0.00 4.01
222 223 2.361992 CTGGGCAGCCATCTTGCA 60.362 61.111 15.19 0.00 0.00 4.08
223 224 2.361992 TGGGCAGCCATCTTGCAG 60.362 61.111 15.19 0.00 0.00 4.41
224 225 3.834799 GGGCAGCCATCTTGCAGC 61.835 66.667 15.19 0.00 42.39 5.25
225 226 4.189188 GGCAGCCATCTTGCAGCG 62.189 66.667 6.55 0.00 43.86 5.18
226 227 4.189188 GCAGCCATCTTGCAGCGG 62.189 66.667 0.00 0.00 34.02 5.52
227 228 2.749044 CAGCCATCTTGCAGCGGT 60.749 61.111 0.00 0.00 0.00 5.68
228 229 2.437359 AGCCATCTTGCAGCGGTC 60.437 61.111 0.00 0.00 0.00 4.79
229 230 3.512516 GCCATCTTGCAGCGGTCC 61.513 66.667 0.00 0.00 0.00 4.46
230 231 2.270205 CCATCTTGCAGCGGTCCT 59.730 61.111 0.00 0.00 0.00 3.85
231 232 1.522092 CCATCTTGCAGCGGTCCTA 59.478 57.895 0.00 0.00 0.00 2.94
232 233 0.107703 CCATCTTGCAGCGGTCCTAA 60.108 55.000 0.00 0.00 0.00 2.69
233 234 1.475751 CCATCTTGCAGCGGTCCTAAT 60.476 52.381 0.00 0.00 0.00 1.73
234 235 1.869767 CATCTTGCAGCGGTCCTAATC 59.130 52.381 0.00 0.00 0.00 1.75
235 236 1.195115 TCTTGCAGCGGTCCTAATCT 58.805 50.000 0.00 0.00 0.00 2.40
236 237 1.137086 TCTTGCAGCGGTCCTAATCTC 59.863 52.381 0.00 0.00 0.00 2.75
237 238 0.901827 TTGCAGCGGTCCTAATCTCA 59.098 50.000 0.00 0.00 0.00 3.27
238 239 0.175760 TGCAGCGGTCCTAATCTCAC 59.824 55.000 0.00 0.00 0.00 3.51
239 240 0.530870 GCAGCGGTCCTAATCTCACC 60.531 60.000 0.00 0.00 0.00 4.02
240 241 0.105039 CAGCGGTCCTAATCTCACCC 59.895 60.000 0.00 0.00 0.00 4.61
241 242 1.049289 AGCGGTCCTAATCTCACCCC 61.049 60.000 0.00 0.00 0.00 4.95
242 243 2.041206 GCGGTCCTAATCTCACCCCC 62.041 65.000 0.00 0.00 0.00 5.40
243 244 1.745320 CGGTCCTAATCTCACCCCCG 61.745 65.000 0.00 0.00 0.00 5.73
244 245 0.690077 GGTCCTAATCTCACCCCCGT 60.690 60.000 0.00 0.00 0.00 5.28
245 246 1.201424 GTCCTAATCTCACCCCCGTT 58.799 55.000 0.00 0.00 0.00 4.44
246 247 1.134491 GTCCTAATCTCACCCCCGTTG 60.134 57.143 0.00 0.00 0.00 4.10
247 248 1.200519 CCTAATCTCACCCCCGTTGA 58.799 55.000 0.00 0.00 0.00 3.18
248 249 1.134491 CCTAATCTCACCCCCGTTGAC 60.134 57.143 0.00 0.00 0.00 3.18
249 250 1.831736 CTAATCTCACCCCCGTTGACT 59.168 52.381 0.00 0.00 0.00 3.41
250 251 0.324943 AATCTCACCCCCGTTGACTG 59.675 55.000 0.00 0.00 0.00 3.51
251 252 0.544357 ATCTCACCCCCGTTGACTGA 60.544 55.000 0.00 0.00 0.00 3.41
252 253 0.544357 TCTCACCCCCGTTGACTGAT 60.544 55.000 0.00 0.00 0.00 2.90
253 254 0.108138 CTCACCCCCGTTGACTGATC 60.108 60.000 0.00 0.00 0.00 2.92
254 255 0.544357 TCACCCCCGTTGACTGATCT 60.544 55.000 0.00 0.00 0.00 2.75
255 256 0.108138 CACCCCCGTTGACTGATCTC 60.108 60.000 0.00 0.00 0.00 2.75
256 257 1.265454 ACCCCCGTTGACTGATCTCC 61.265 60.000 0.00 0.00 0.00 3.71
257 258 1.141881 CCCCGTTGACTGATCTCCG 59.858 63.158 0.00 0.00 0.00 4.63
258 259 1.141881 CCCGTTGACTGATCTCCGG 59.858 63.158 0.00 0.00 38.06 5.14
259 260 1.141881 CCGTTGACTGATCTCCGGG 59.858 63.158 0.00 0.00 36.05 5.73
260 261 1.519455 CGTTGACTGATCTCCGGGC 60.519 63.158 0.00 0.00 0.00 6.13
261 262 1.519455 GTTGACTGATCTCCGGGCG 60.519 63.158 0.00 0.00 29.12 6.13
262 263 1.680989 TTGACTGATCTCCGGGCGA 60.681 57.895 0.00 0.00 29.12 5.54
263 264 1.254975 TTGACTGATCTCCGGGCGAA 61.255 55.000 0.00 0.00 29.12 4.70
264 265 1.066587 GACTGATCTCCGGGCGAAG 59.933 63.158 0.00 0.00 0.00 3.79
265 266 1.379977 ACTGATCTCCGGGCGAAGA 60.380 57.895 0.00 0.00 0.00 2.87
266 267 1.066587 CTGATCTCCGGGCGAAGAC 59.933 63.158 0.00 0.00 0.00 3.01
267 268 1.667154 CTGATCTCCGGGCGAAGACA 61.667 60.000 0.00 0.00 37.00 3.41
268 269 1.254975 TGATCTCCGGGCGAAGACAA 61.255 55.000 0.00 0.00 37.00 3.18
269 270 0.528684 GATCTCCGGGCGAAGACAAG 60.529 60.000 0.00 0.00 37.00 3.16
270 271 1.258445 ATCTCCGGGCGAAGACAAGT 61.258 55.000 0.00 0.00 37.00 3.16
271 272 1.004918 CTCCGGGCGAAGACAAGTT 60.005 57.895 0.00 0.00 37.00 2.66
272 273 1.005394 TCCGGGCGAAGACAAGTTC 60.005 57.895 0.00 0.00 37.00 3.01
273 274 2.033194 CCGGGCGAAGACAAGTTCC 61.033 63.158 0.00 0.00 37.00 3.62
274 275 1.301401 CGGGCGAAGACAAGTTCCA 60.301 57.895 0.00 0.00 37.00 3.53
275 276 1.566018 CGGGCGAAGACAAGTTCCAC 61.566 60.000 0.00 0.00 37.00 4.02
276 277 1.566018 GGGCGAAGACAAGTTCCACG 61.566 60.000 0.00 0.00 37.00 4.94
277 278 0.878961 GGCGAAGACAAGTTCCACGT 60.879 55.000 0.00 0.00 31.66 4.49
278 279 0.507358 GCGAAGACAAGTTCCACGTC 59.493 55.000 0.00 0.00 0.00 4.34
279 280 1.847818 CGAAGACAAGTTCCACGTCA 58.152 50.000 0.00 0.00 31.92 4.35
280 281 2.198406 CGAAGACAAGTTCCACGTCAA 58.802 47.619 0.00 0.00 31.92 3.18
281 282 2.605818 CGAAGACAAGTTCCACGTCAAA 59.394 45.455 0.00 0.00 31.92 2.69
282 283 3.062909 CGAAGACAAGTTCCACGTCAAAA 59.937 43.478 0.00 0.00 31.92 2.44
283 284 4.340263 GAAGACAAGTTCCACGTCAAAAC 58.660 43.478 0.00 0.00 31.92 2.43
284 285 2.681344 AGACAAGTTCCACGTCAAAACC 59.319 45.455 0.00 0.00 31.92 3.27
285 286 1.746787 ACAAGTTCCACGTCAAAACCC 59.253 47.619 0.00 0.00 0.00 4.11
286 287 2.021457 CAAGTTCCACGTCAAAACCCT 58.979 47.619 0.00 0.00 0.00 4.34
287 288 3.207778 CAAGTTCCACGTCAAAACCCTA 58.792 45.455 0.00 0.00 0.00 3.53
288 289 3.121738 AGTTCCACGTCAAAACCCTAG 57.878 47.619 0.00 0.00 0.00 3.02
289 290 2.436911 AGTTCCACGTCAAAACCCTAGT 59.563 45.455 0.00 0.00 0.00 2.57
290 291 2.804527 GTTCCACGTCAAAACCCTAGTC 59.195 50.000 0.00 0.00 0.00 2.59
291 292 1.000060 TCCACGTCAAAACCCTAGTCG 60.000 52.381 0.00 0.00 0.00 4.18
292 293 0.788391 CACGTCAAAACCCTAGTCGC 59.212 55.000 0.00 0.00 0.00 5.19
293 294 0.320160 ACGTCAAAACCCTAGTCGCC 60.320 55.000 0.00 0.00 0.00 5.54
294 295 0.320073 CGTCAAAACCCTAGTCGCCA 60.320 55.000 0.00 0.00 0.00 5.69
295 296 1.154197 GTCAAAACCCTAGTCGCCAC 58.846 55.000 0.00 0.00 0.00 5.01
296 297 0.035739 TCAAAACCCTAGTCGCCACC 59.964 55.000 0.00 0.00 0.00 4.61
297 298 0.250553 CAAAACCCTAGTCGCCACCA 60.251 55.000 0.00 0.00 0.00 4.17
298 299 0.036306 AAAACCCTAGTCGCCACCAG 59.964 55.000 0.00 0.00 0.00 4.00
299 300 2.465055 AAACCCTAGTCGCCACCAGC 62.465 60.000 0.00 0.00 38.52 4.85
318 319 2.676471 CCGCCAGAGGGGTTTTGG 60.676 66.667 0.00 0.00 41.20 3.28
319 320 2.676471 CGCCAGAGGGGTTTTGGG 60.676 66.667 0.00 0.00 39.65 4.12
320 321 2.283894 GCCAGAGGGGTTTTGGGG 60.284 66.667 0.00 0.00 39.65 4.96
321 322 2.852281 GCCAGAGGGGTTTTGGGGA 61.852 63.158 0.00 0.00 39.65 4.81
322 323 1.857777 CCAGAGGGGTTTTGGGGAA 59.142 57.895 0.00 0.00 0.00 3.97
323 324 0.189822 CCAGAGGGGTTTTGGGGAAA 59.810 55.000 0.00 0.00 0.00 3.13
324 325 1.413808 CCAGAGGGGTTTTGGGGAAAA 60.414 52.381 0.00 0.00 0.00 2.29
325 326 2.403561 CAGAGGGGTTTTGGGGAAAAA 58.596 47.619 0.00 0.00 35.35 1.94
343 344 4.965119 AAAAACTTAGGATCACCGATGC 57.035 40.909 0.00 0.00 41.83 3.91
344 345 2.225068 AACTTAGGATCACCGATGCG 57.775 50.000 0.00 0.00 41.83 4.73
345 346 1.399714 ACTTAGGATCACCGATGCGA 58.600 50.000 0.00 0.00 41.83 5.10
346 347 1.754803 ACTTAGGATCACCGATGCGAA 59.245 47.619 0.00 0.00 41.83 4.70
347 348 2.128035 CTTAGGATCACCGATGCGAAC 58.872 52.381 0.00 0.00 41.83 3.95
348 349 1.399714 TAGGATCACCGATGCGAACT 58.600 50.000 0.00 0.00 41.83 3.01
349 350 0.179100 AGGATCACCGATGCGAACTG 60.179 55.000 0.00 0.00 41.83 3.16
350 351 0.179111 GGATCACCGATGCGAACTGA 60.179 55.000 0.00 0.00 0.00 3.41
351 352 1.640428 GATCACCGATGCGAACTGAA 58.360 50.000 0.00 0.00 0.00 3.02
352 353 1.999735 GATCACCGATGCGAACTGAAA 59.000 47.619 0.00 0.00 0.00 2.69
353 354 1.428448 TCACCGATGCGAACTGAAAG 58.572 50.000 0.00 0.00 42.29 2.62
354 355 0.179215 CACCGATGCGAACTGAAAGC 60.179 55.000 0.00 0.00 37.60 3.51
355 356 1.298859 ACCGATGCGAACTGAAAGCC 61.299 55.000 0.00 0.00 37.60 4.35
356 357 1.298157 CCGATGCGAACTGAAAGCCA 61.298 55.000 0.00 0.00 37.60 4.75
357 358 0.179215 CGATGCGAACTGAAAGCCAC 60.179 55.000 0.00 0.00 37.60 5.01
358 359 0.169009 GATGCGAACTGAAAGCCACC 59.831 55.000 0.00 0.00 37.60 4.61
359 360 0.537143 ATGCGAACTGAAAGCCACCA 60.537 50.000 0.00 0.00 37.60 4.17
360 361 1.165907 TGCGAACTGAAAGCCACCAG 61.166 55.000 0.00 0.00 37.60 4.00
361 362 1.166531 GCGAACTGAAAGCCACCAGT 61.167 55.000 0.00 0.00 44.69 4.00
365 366 1.680338 ACTGAAAGCCACCAGTTGAC 58.320 50.000 0.00 0.00 40.40 3.18
366 367 0.588252 CTGAAAGCCACCAGTTGACG 59.412 55.000 0.00 0.00 0.00 4.35
367 368 1.282875 GAAAGCCACCAGTTGACGC 59.717 57.895 0.00 0.00 0.00 5.19
368 369 1.152963 AAAGCCACCAGTTGACGCT 60.153 52.632 0.00 0.00 0.00 5.07
369 370 0.751643 AAAGCCACCAGTTGACGCTT 60.752 50.000 0.00 0.00 41.37 4.68
370 371 1.447317 AAGCCACCAGTTGACGCTTG 61.447 55.000 0.00 0.00 38.32 4.01
371 372 2.908073 GCCACCAGTTGACGCTTGG 61.908 63.158 0.00 0.00 0.00 3.61
372 373 1.525995 CCACCAGTTGACGCTTGGT 60.526 57.895 0.00 0.00 0.00 3.67
373 374 1.648720 CACCAGTTGACGCTTGGTG 59.351 57.895 8.32 8.32 43.06 4.17
374 375 2.186826 ACCAGTTGACGCTTGGTGC 61.187 57.895 0.00 0.00 38.57 5.01
375 376 2.639286 CAGTTGACGCTTGGTGCC 59.361 61.111 0.00 0.00 38.78 5.01
376 377 2.594592 AGTTGACGCTTGGTGCCC 60.595 61.111 0.00 0.00 38.78 5.36
377 378 3.670377 GTTGACGCTTGGTGCCCC 61.670 66.667 0.00 0.00 38.78 5.80
378 379 4.196778 TTGACGCTTGGTGCCCCA 62.197 61.111 0.00 0.00 39.65 4.96
379 380 4.641645 TGACGCTTGGTGCCCCAG 62.642 66.667 0.00 0.00 43.15 4.45
380 381 4.643387 GACGCTTGGTGCCCCAGT 62.643 66.667 0.00 0.00 43.15 4.00
381 382 4.643387 ACGCTTGGTGCCCCAGTC 62.643 66.667 0.00 0.00 43.15 3.51
382 383 4.335647 CGCTTGGTGCCCCAGTCT 62.336 66.667 0.00 0.00 43.15 3.24
383 384 2.954684 CGCTTGGTGCCCCAGTCTA 61.955 63.158 0.00 0.00 43.15 2.59
384 385 1.377333 GCTTGGTGCCCCAGTCTAC 60.377 63.158 0.00 0.00 43.15 2.59
385 386 1.842381 GCTTGGTGCCCCAGTCTACT 61.842 60.000 0.00 0.00 43.15 2.57
386 387 0.036010 CTTGGTGCCCCAGTCTACTG 60.036 60.000 3.02 3.02 43.15 2.74
387 388 0.472925 TTGGTGCCCCAGTCTACTGA 60.473 55.000 11.69 0.00 46.59 3.41
388 389 0.904865 TGGTGCCCCAGTCTACTGAG 60.905 60.000 11.69 0.00 46.59 3.35
389 390 0.614979 GGTGCCCCAGTCTACTGAGA 60.615 60.000 11.69 0.00 46.59 3.27
399 400 2.724454 GTCTACTGAGACCTAGCCACA 58.276 52.381 0.00 0.00 45.61 4.17
400 401 3.292460 GTCTACTGAGACCTAGCCACAT 58.708 50.000 0.00 0.00 45.61 3.21
401 402 3.316868 GTCTACTGAGACCTAGCCACATC 59.683 52.174 0.00 0.00 45.61 3.06
402 403 2.541233 ACTGAGACCTAGCCACATCT 57.459 50.000 0.00 0.00 0.00 2.90
403 404 2.826488 ACTGAGACCTAGCCACATCTT 58.174 47.619 0.00 0.00 0.00 2.40
404 405 3.177228 ACTGAGACCTAGCCACATCTTT 58.823 45.455 0.00 0.00 0.00 2.52
405 406 3.584848 ACTGAGACCTAGCCACATCTTTT 59.415 43.478 0.00 0.00 0.00 2.27
406 407 4.042187 ACTGAGACCTAGCCACATCTTTTT 59.958 41.667 0.00 0.00 0.00 1.94
407 408 4.326826 TGAGACCTAGCCACATCTTTTTG 58.673 43.478 0.00 0.00 0.00 2.44
408 409 4.202461 TGAGACCTAGCCACATCTTTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
409 410 5.012664 TGAGACCTAGCCACATCTTTTTGTA 59.987 40.000 0.00 0.00 0.00 2.41
410 411 5.876357 AGACCTAGCCACATCTTTTTGTAA 58.124 37.500 0.00 0.00 0.00 2.41
411 412 6.303839 AGACCTAGCCACATCTTTTTGTAAA 58.696 36.000 0.00 0.00 0.00 2.01
412 413 6.775629 AGACCTAGCCACATCTTTTTGTAAAA 59.224 34.615 0.00 0.00 0.00 1.52
413 414 6.981722 ACCTAGCCACATCTTTTTGTAAAAG 58.018 36.000 5.72 5.72 0.00 2.27
414 415 6.549736 ACCTAGCCACATCTTTTTGTAAAAGT 59.450 34.615 10.65 0.00 0.00 2.66
415 416 7.069455 ACCTAGCCACATCTTTTTGTAAAAGTT 59.931 33.333 10.65 1.85 0.00 2.66
416 417 7.382218 CCTAGCCACATCTTTTTGTAAAAGTTG 59.618 37.037 15.91 15.91 34.69 3.16
417 418 6.872920 AGCCACATCTTTTTGTAAAAGTTGA 58.127 32.000 20.99 8.71 33.47 3.18
418 419 6.756542 AGCCACATCTTTTTGTAAAAGTTGAC 59.243 34.615 20.99 13.43 33.47 3.18
419 420 6.533367 GCCACATCTTTTTGTAAAAGTTGACA 59.467 34.615 20.99 0.00 33.47 3.58
420 421 7.254084 GCCACATCTTTTTGTAAAAGTTGACAG 60.254 37.037 20.99 13.37 33.47 3.51
421 422 7.973388 CCACATCTTTTTGTAAAAGTTGACAGA 59.027 33.333 20.99 7.93 33.47 3.41
422 423 9.520204 CACATCTTTTTGTAAAAGTTGACAGAT 57.480 29.630 20.99 9.38 33.47 2.90
434 435 8.647143 AAAAGTTGACAGATAAATGTTTGTGG 57.353 30.769 0.00 0.00 32.25 4.17
448 449 8.785329 AAATGTTTGTGGTTATCTTTGTTTGT 57.215 26.923 0.00 0.00 0.00 2.83
455 456 9.743057 TTGTGGTTATCTTTGTTTGTTCTATTG 57.257 29.630 0.00 0.00 0.00 1.90
456 457 7.865385 TGTGGTTATCTTTGTTTGTTCTATTGC 59.135 33.333 0.00 0.00 0.00 3.56
470 475 2.817258 TCTATTGCCTTGGTTTGTTCCG 59.183 45.455 0.00 0.00 0.00 4.30
471 476 1.698506 ATTGCCTTGGTTTGTTCCGA 58.301 45.000 0.00 0.00 0.00 4.55
473 478 2.570415 TGCCTTGGTTTGTTCCGATA 57.430 45.000 0.00 0.00 0.00 2.92
475 480 4.223556 TGCCTTGGTTTGTTCCGATATA 57.776 40.909 0.00 0.00 0.00 0.86
482 487 4.339814 TGGTTTGTTCCGATATATTTGGCC 59.660 41.667 0.00 0.00 0.00 5.36
502 507 3.245990 GCCATTTCAACTGCAACACTTTC 59.754 43.478 0.00 0.00 0.00 2.62
557 564 5.828871 ACTCTGTCAAGGTACTACTACCAT 58.171 41.667 1.95 0.00 44.75 3.55
558 565 5.887035 ACTCTGTCAAGGTACTACTACCATC 59.113 44.000 1.95 0.00 44.75 3.51
563 570 2.584236 AGGTACTACTACCATCGCAGG 58.416 52.381 1.95 0.00 44.75 4.85
566 573 2.730934 ACTACTACCATCGCAGGAGA 57.269 50.000 0.00 0.00 0.00 3.71
567 574 2.299521 ACTACTACCATCGCAGGAGAC 58.700 52.381 0.00 0.00 0.00 3.36
586 593 1.003718 ACCAAAGCGTGCCTACTCC 60.004 57.895 0.00 0.00 0.00 3.85
589 596 0.741221 CAAAGCGTGCCTACTCCTCC 60.741 60.000 0.00 0.00 0.00 4.30
608 615 4.461198 CTCCAGTACAAACTTCCAGGTTT 58.539 43.478 0.00 0.00 39.62 3.27
609 616 4.862371 TCCAGTACAAACTTCCAGGTTTT 58.138 39.130 0.00 0.00 37.32 2.43
666 673 6.316319 TGGACGTACAAACAAACTTTTTCTC 58.684 36.000 0.00 0.00 0.00 2.87
671 678 4.421058 ACAAACAAACTTTTTCTCCGAGC 58.579 39.130 0.00 0.00 0.00 5.03
694 705 1.159098 GGCACGTACAAACAACGGGA 61.159 55.000 1.49 0.00 46.58 5.14
708 719 0.033920 ACGGGAGTAACGAACAACCC 59.966 55.000 13.37 13.37 44.60 4.11
914 932 2.028930 CGCTGTCTCCTTGACCTTTACT 60.029 50.000 0.00 0.00 44.75 2.24
965 993 2.716017 CGCTCCACTCCACTCCCTC 61.716 68.421 0.00 0.00 0.00 4.30
966 994 1.305718 GCTCCACTCCACTCCCTCT 60.306 63.158 0.00 0.00 0.00 3.69
1026 1060 3.877357 CATCTGCTGCTGCCGCTG 61.877 66.667 16.81 15.82 38.71 5.18
1902 1936 1.266175 CCGTACTATCTCGACGCCATT 59.734 52.381 0.00 0.00 35.28 3.16
1953 1987 1.291877 GCATCGTTGTGTCCGCTTCT 61.292 55.000 0.00 0.00 0.00 2.85
2448 2485 4.208632 GGCACCATCCTGTTCGAG 57.791 61.111 0.00 0.00 0.00 4.04
2454 2491 1.599047 CATCCTGTTCGAGGGCACT 59.401 57.895 0.00 0.00 43.06 4.40
2544 2581 1.079750 GACACTCAAGCCGGACCTC 60.080 63.158 5.05 0.00 0.00 3.85
2550 2587 1.592669 CAAGCCGGACCTCATAGCG 60.593 63.158 5.05 0.00 0.00 4.26
2649 2686 1.191489 TCAACATCCTCTCCGGCACA 61.191 55.000 0.00 0.00 0.00 4.57
2787 2824 2.434884 AACGGCACCATGCTCGAG 60.435 61.111 8.45 8.45 44.28 4.04
2829 2866 3.774702 GTGTTCGACTTCGGCGCC 61.775 66.667 19.07 19.07 40.29 6.53
2935 2972 1.060713 CAACTACACGGAGCAGAACG 58.939 55.000 0.00 0.00 0.00 3.95
3033 3070 2.100631 CCTGTCCGCCATGTTCGTC 61.101 63.158 0.00 0.00 0.00 4.20
3087 3124 1.745115 CATCCGCACGGTGACCAAT 60.745 57.895 13.29 0.00 36.47 3.16
3322 3359 4.430765 GCCCGATCGTGGTGACGT 62.431 66.667 15.09 0.00 46.20 4.34
3364 3401 1.302511 GGCCGGCTCACTGAAAAGA 60.303 57.895 28.56 0.00 0.00 2.52
3373 3425 4.047822 GCTCACTGAAAAGATCGATCGAT 58.952 43.478 29.76 29.76 37.59 3.59
3416 3468 0.039074 CGATCTCCGGCATGTAGACC 60.039 60.000 0.00 0.00 33.91 3.85
3420 3472 1.945354 CTCCGGCATGTAGACCACGT 61.945 60.000 0.00 0.00 0.00 4.49
3421 3473 0.680601 TCCGGCATGTAGACCACGTA 60.681 55.000 0.00 0.00 0.00 3.57
3422 3474 0.526954 CCGGCATGTAGACCACGTAC 60.527 60.000 0.00 0.00 0.00 3.67
3423 3475 0.454600 CGGCATGTAGACCACGTACT 59.545 55.000 0.00 0.00 0.00 2.73
3424 3476 1.797713 CGGCATGTAGACCACGTACTG 60.798 57.143 0.00 0.00 0.00 2.74
3426 3478 2.424601 GGCATGTAGACCACGTACTGTA 59.575 50.000 0.00 0.00 0.00 2.74
3427 3479 3.432782 GCATGTAGACCACGTACTGTAC 58.567 50.000 7.90 7.90 0.00 2.90
3428 3480 3.128242 GCATGTAGACCACGTACTGTACT 59.872 47.826 15.35 0.00 0.00 2.73
3505 3578 4.868171 GTGCCATCTCGTCTTATACAACAA 59.132 41.667 0.00 0.00 0.00 2.83
3509 3582 6.198591 GCCATCTCGTCTTATACAACAAGTAC 59.801 42.308 0.00 0.00 35.05 2.73
3524 3597 7.368833 ACAACAAGTACTACTAACAGCTACTG 58.631 38.462 0.00 0.00 37.52 2.74
3528 3601 7.667219 ACAAGTACTACTAACAGCTACTGGTAA 59.333 37.037 0.00 0.00 32.93 2.85
3529 3602 8.684520 CAAGTACTACTAACAGCTACTGGTAAT 58.315 37.037 0.00 0.00 32.93 1.89
3530 3603 9.911788 AAGTACTACTAACAGCTACTGGTAATA 57.088 33.333 0.00 0.00 32.93 0.98
3533 3606 8.991783 ACTACTAACAGCTACTGGTAATATCA 57.008 34.615 0.00 0.00 32.93 2.15
3534 3607 9.589461 ACTACTAACAGCTACTGGTAATATCAT 57.411 33.333 0.00 0.00 32.93 2.45
3541 3614 8.029522 ACAGCTACTGGTAATATCATAACATCG 58.970 37.037 0.00 0.00 35.51 3.84
3542 3615 7.009631 CAGCTACTGGTAATATCATAACATCGC 59.990 40.741 0.00 0.00 0.00 4.58
3543 3616 6.811665 GCTACTGGTAATATCATAACATCGCA 59.188 38.462 0.00 0.00 0.00 5.10
3581 3666 7.255491 GTTAATTAACCTGCACCCTACATAC 57.745 40.000 16.14 0.00 0.00 2.39
3582 3667 5.444744 AATTAACCTGCACCCTACATACA 57.555 39.130 0.00 0.00 0.00 2.29
3635 3724 7.640240 GCTACGAAAATTACAGATGTTTCATCC 59.360 37.037 6.18 0.00 31.66 3.51
3664 3753 3.199946 TGCCGGATTAACTTGAGAGGATT 59.800 43.478 5.05 0.00 0.00 3.01
3700 3825 2.173669 CCGTACGCCCTGAGCATTG 61.174 63.158 10.49 0.00 44.04 2.82
3703 3828 1.002746 TACGCCCTGAGCATTGCAA 60.003 52.632 11.91 0.00 44.04 4.08
3796 3924 1.503542 CAGCGATGGTTCCTGCAAC 59.496 57.895 0.00 0.00 0.00 4.17
3848 3979 0.829333 ACATGCCAAGAGCTCGAGAT 59.171 50.000 18.75 10.84 44.23 2.75
3853 3984 2.760650 TGCCAAGAGCTCGAGATTTCTA 59.239 45.455 18.75 0.00 44.23 2.10
3854 3985 3.195610 TGCCAAGAGCTCGAGATTTCTAA 59.804 43.478 18.75 0.00 44.23 2.10
3859 3990 6.035542 CCAAGAGCTCGAGATTTCTAAAAGTC 59.964 42.308 18.75 0.00 0.00 3.01
3889 4020 2.674380 GGACTGGGCTGCTTGGTG 60.674 66.667 0.00 0.00 0.00 4.17
3928 4059 1.755008 GACGAGGTAGAGCAGGGCT 60.755 63.158 0.00 0.00 43.88 5.19
3958 4089 0.824109 TCTTCATCAGGTACAGGCCG 59.176 55.000 0.00 0.00 0.00 6.13
3968 4099 1.140161 TACAGGCCGACATACGTGC 59.860 57.895 0.00 0.00 40.78 5.34
3976 4107 0.298707 CGACATACGTGCATGACAGC 59.701 55.000 14.17 0.00 37.22 4.40
3990 4121 0.955428 GACAGCCCTGCATCGTCAAA 60.955 55.000 0.00 0.00 0.00 2.69
3997 4128 1.632422 CTGCATCGTCAAATTTGGGC 58.368 50.000 17.90 13.50 0.00 5.36
4001 4132 2.796032 GCATCGTCAAATTTGGGCTAGC 60.796 50.000 17.90 6.04 0.00 3.42
4012 4145 5.896073 ATTTGGGCTAGCTATCAGTTAGT 57.104 39.130 15.72 0.00 32.44 2.24
4021 4154 7.255520 GGCTAGCTATCAGTTAGTAACAGCTTA 60.256 40.741 23.11 12.66 38.70 3.09
4023 4156 9.619316 CTAGCTATCAGTTAGTAACAGCTTATG 57.381 37.037 23.11 13.89 38.70 1.90
4024 4157 7.437748 AGCTATCAGTTAGTAACAGCTTATGG 58.562 38.462 16.07 3.36 34.35 2.74
4025 4158 6.146347 GCTATCAGTTAGTAACAGCTTATGGC 59.854 42.308 15.28 6.92 42.19 4.40
4026 4159 5.414789 TCAGTTAGTAACAGCTTATGGCA 57.585 39.130 15.28 0.00 44.79 4.92
4027 4160 5.175859 TCAGTTAGTAACAGCTTATGGCAC 58.824 41.667 15.28 0.00 44.79 5.01
4031 4164 2.749621 AGTAACAGCTTATGGCACTTGC 59.250 45.455 0.00 0.00 44.79 4.01
4032 4165 1.619654 AACAGCTTATGGCACTTGCA 58.380 45.000 3.15 0.00 44.79 4.08
4033 4166 1.619654 ACAGCTTATGGCACTTGCAA 58.380 45.000 0.00 0.00 44.79 4.08
4034 4167 1.962807 ACAGCTTATGGCACTTGCAAA 59.037 42.857 0.00 0.00 44.79 3.68
4035 4168 2.029649 ACAGCTTATGGCACTTGCAAAG 60.030 45.455 0.00 4.93 44.29 2.77
4036 4169 1.547372 AGCTTATGGCACTTGCAAAGG 59.453 47.619 0.00 0.00 43.48 3.11
4037 4170 3.082725 AGCTTATGGCACTTGCAAAGGT 61.083 45.455 0.00 6.35 43.48 3.50
4038 4171 5.174120 AGCTTATGGCACTTGCAAAGGTG 62.174 47.826 13.08 13.08 43.48 4.00
4060 4194 5.067413 GTGGTTATCTATCACGAGGTTCAGA 59.933 44.000 0.00 0.00 0.00 3.27
4063 4197 7.147724 TGGTTATCTATCACGAGGTTCAGAAAT 60.148 37.037 0.00 0.00 0.00 2.17
4068 4202 4.079980 TCACGAGGTTCAGAAATTTGGA 57.920 40.909 0.00 0.00 0.00 3.53
4115 4249 1.667212 CGTAGGGGAAATAACCGTTGC 59.333 52.381 0.00 0.00 0.00 4.17
4142 4276 0.389817 CTTCCCGTGCGATCTGTCAA 60.390 55.000 0.00 0.00 0.00 3.18
4164 4298 4.023137 GCATCATGCAACCCAGGT 57.977 55.556 4.20 0.00 44.26 4.00
4166 4300 0.966875 GCATCATGCAACCCAGGTGA 60.967 55.000 4.20 0.00 44.26 4.02
4168 4302 2.104967 CATCATGCAACCCAGGTGAAT 58.895 47.619 0.00 0.00 0.00 2.57
4169 4303 1.548081 TCATGCAACCCAGGTGAATG 58.452 50.000 0.00 0.00 0.00 2.67
4170 4304 1.203038 TCATGCAACCCAGGTGAATGT 60.203 47.619 0.60 0.00 0.00 2.71
4171 4305 1.203052 CATGCAACCCAGGTGAATGTC 59.797 52.381 0.00 0.00 0.00 3.06
4172 4306 0.888736 TGCAACCCAGGTGAATGTCG 60.889 55.000 0.00 0.00 0.00 4.35
4173 4307 1.586154 GCAACCCAGGTGAATGTCGG 61.586 60.000 0.00 0.00 0.00 4.79
4174 4308 1.303317 AACCCAGGTGAATGTCGGC 60.303 57.895 0.00 0.00 0.00 5.54
4175 4309 2.063015 AACCCAGGTGAATGTCGGCA 62.063 55.000 0.00 0.00 0.00 5.69
4177 4311 1.586154 CCCAGGTGAATGTCGGCAAC 61.586 60.000 0.00 0.00 0.00 4.17
4178 4312 0.888736 CCAGGTGAATGTCGGCAACA 60.889 55.000 0.00 0.00 43.51 3.33
4186 4320 2.723124 ATGTCGGCAACATTTGGTTC 57.277 45.000 0.00 0.00 46.73 3.62
4188 4322 1.751351 TGTCGGCAACATTTGGTTCAA 59.249 42.857 0.00 0.00 37.72 2.69
4190 4324 2.034053 GTCGGCAACATTTGGTTCAAGA 59.966 45.455 0.00 0.00 37.72 3.02
4191 4325 2.293122 TCGGCAACATTTGGTTCAAGAG 59.707 45.455 0.00 0.00 37.72 2.85
4193 4327 2.627699 GGCAACATTTGGTTCAAGAGGA 59.372 45.455 0.00 0.00 37.72 3.71
4194 4328 3.069443 GGCAACATTTGGTTCAAGAGGAA 59.931 43.478 0.00 0.00 37.72 3.36
4196 4330 4.687483 GCAACATTTGGTTCAAGAGGAATG 59.313 41.667 0.00 0.00 37.72 2.67
4198 4332 3.834231 ACATTTGGTTCAAGAGGAATGGG 59.166 43.478 0.00 0.00 37.93 4.00
4201 4335 1.786441 TGGTTCAAGAGGAATGGGGTT 59.214 47.619 0.00 0.00 37.93 4.11
4204 4338 3.084786 GTTCAAGAGGAATGGGGTTCAG 58.915 50.000 0.00 0.00 38.64 3.02
4205 4339 2.631384 TCAAGAGGAATGGGGTTCAGA 58.369 47.619 0.00 0.00 38.64 3.27
4207 4341 3.397618 TCAAGAGGAATGGGGTTCAGAAA 59.602 43.478 0.00 0.00 38.64 2.52
4208 4342 3.441500 AGAGGAATGGGGTTCAGAAAC 57.558 47.619 0.00 0.00 38.64 2.78
4209 4343 2.989571 AGAGGAATGGGGTTCAGAAACT 59.010 45.455 0.00 0.00 38.64 2.66
4210 4344 3.009584 AGAGGAATGGGGTTCAGAAACTC 59.990 47.826 0.00 0.00 38.64 3.01
4216 4350 1.809684 GGGTTCAGAAACTCCTTCCG 58.190 55.000 0.00 0.00 35.61 4.30
4217 4351 1.071857 GGGTTCAGAAACTCCTTCCGT 59.928 52.381 0.00 0.00 35.61 4.69
4221 4355 1.760613 TCAGAAACTCCTTCCGTGTGT 59.239 47.619 0.00 0.00 34.21 3.72
4224 4358 0.544697 AAACTCCTTCCGTGTGTGGT 59.455 50.000 0.00 0.00 0.00 4.16
4225 4359 0.179056 AACTCCTTCCGTGTGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
4227 4361 0.179056 CTCCTTCCGTGTGTGGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
4228 4362 0.253610 TCCTTCCGTGTGTGGTGTTT 59.746 50.000 0.00 0.00 0.00 2.83
4229 4363 1.099689 CCTTCCGTGTGTGGTGTTTT 58.900 50.000 0.00 0.00 0.00 2.43
4230 4364 2.093075 TCCTTCCGTGTGTGGTGTTTTA 60.093 45.455 0.00 0.00 0.00 1.52
4276 4421 1.826024 CCCTGGGAAGAGGATGTCG 59.174 63.158 7.01 0.00 34.69 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.123186 CGCAACTTGTTCCATATTTAGACCA 59.877 40.000 0.00 0.00 0.00 4.02
1 2 5.353123 TCGCAACTTGTTCCATATTTAGACC 59.647 40.000 0.00 0.00 0.00 3.85
2 3 6.417191 TCGCAACTTGTTCCATATTTAGAC 57.583 37.500 0.00 0.00 0.00 2.59
3 4 6.038161 CCATCGCAACTTGTTCCATATTTAGA 59.962 38.462 0.00 0.00 0.00 2.10
4 5 6.038161 TCCATCGCAACTTGTTCCATATTTAG 59.962 38.462 0.00 0.00 0.00 1.85
5 6 5.883115 TCCATCGCAACTTGTTCCATATTTA 59.117 36.000 0.00 0.00 0.00 1.40
6 7 4.704540 TCCATCGCAACTTGTTCCATATTT 59.295 37.500 0.00 0.00 0.00 1.40
7 8 4.269183 TCCATCGCAACTTGTTCCATATT 58.731 39.130 0.00 0.00 0.00 1.28
8 9 3.879295 CTCCATCGCAACTTGTTCCATAT 59.121 43.478 0.00 0.00 0.00 1.78
9 10 3.270027 CTCCATCGCAACTTGTTCCATA 58.730 45.455 0.00 0.00 0.00 2.74
10 11 2.086869 CTCCATCGCAACTTGTTCCAT 58.913 47.619 0.00 0.00 0.00 3.41
11 12 1.522668 CTCCATCGCAACTTGTTCCA 58.477 50.000 0.00 0.00 0.00 3.53
12 13 0.804989 CCTCCATCGCAACTTGTTCC 59.195 55.000 0.00 0.00 0.00 3.62
13 14 1.464997 GTCCTCCATCGCAACTTGTTC 59.535 52.381 0.00 0.00 0.00 3.18
14 15 1.072331 AGTCCTCCATCGCAACTTGTT 59.928 47.619 0.00 0.00 0.00 2.83
15 16 0.687354 AGTCCTCCATCGCAACTTGT 59.313 50.000 0.00 0.00 0.00 3.16
16 17 1.813513 AAGTCCTCCATCGCAACTTG 58.186 50.000 0.00 0.00 0.00 3.16
17 18 2.568623 AAAGTCCTCCATCGCAACTT 57.431 45.000 0.00 0.00 0.00 2.66
18 19 2.354805 GGTAAAGTCCTCCATCGCAACT 60.355 50.000 0.00 0.00 0.00 3.16
19 20 2.007608 GGTAAAGTCCTCCATCGCAAC 58.992 52.381 0.00 0.00 0.00 4.17
20 21 1.626321 TGGTAAAGTCCTCCATCGCAA 59.374 47.619 0.00 0.00 0.00 4.85
21 22 1.207089 CTGGTAAAGTCCTCCATCGCA 59.793 52.381 0.00 0.00 0.00 5.10
22 23 1.941325 CTGGTAAAGTCCTCCATCGC 58.059 55.000 0.00 0.00 0.00 4.58
23 24 1.473434 GGCTGGTAAAGTCCTCCATCG 60.473 57.143 0.00 0.00 0.00 3.84
24 25 1.473434 CGGCTGGTAAAGTCCTCCATC 60.473 57.143 0.00 0.00 0.00 3.51
25 26 0.541863 CGGCTGGTAAAGTCCTCCAT 59.458 55.000 0.00 0.00 0.00 3.41
26 27 1.980052 CGGCTGGTAAAGTCCTCCA 59.020 57.895 0.00 0.00 0.00 3.86
27 28 1.449778 GCGGCTGGTAAAGTCCTCC 60.450 63.158 0.00 0.00 0.00 4.30
28 29 1.449778 GGCGGCTGGTAAAGTCCTC 60.450 63.158 0.00 0.00 0.00 3.71
29 30 1.774894 TTGGCGGCTGGTAAAGTCCT 61.775 55.000 11.43 0.00 0.00 3.85
30 31 1.302993 TTGGCGGCTGGTAAAGTCC 60.303 57.895 11.43 0.00 0.00 3.85
31 32 1.583495 GGTTGGCGGCTGGTAAAGTC 61.583 60.000 11.43 0.00 0.00 3.01
32 33 1.602605 GGTTGGCGGCTGGTAAAGT 60.603 57.895 11.43 0.00 0.00 2.66
33 34 1.602323 TGGTTGGCGGCTGGTAAAG 60.602 57.895 11.43 0.00 0.00 1.85
34 35 1.899534 GTGGTTGGCGGCTGGTAAA 60.900 57.895 11.43 0.00 0.00 2.01
35 36 2.281900 GTGGTTGGCGGCTGGTAA 60.282 61.111 11.43 0.00 0.00 2.85
36 37 4.338710 GGTGGTTGGCGGCTGGTA 62.339 66.667 11.43 0.00 0.00 3.25
59 60 3.685214 ATCGTGTCGAGCGAGCACC 62.685 63.158 15.56 0.00 41.83 5.01
60 61 2.202492 ATCGTGTCGAGCGAGCAC 60.202 61.111 15.56 5.74 41.83 4.40
61 62 2.100410 GATCGTGTCGAGCGAGCA 59.900 61.111 18.55 0.00 43.20 4.26
70 71 0.656259 TGATCCTCGACGATCGTGTC 59.344 55.000 28.12 11.43 41.39 3.67
71 72 1.092348 TTGATCCTCGACGATCGTGT 58.908 50.000 28.12 0.31 41.39 4.49
72 73 2.112522 CTTTGATCCTCGACGATCGTG 58.887 52.381 28.12 17.50 41.39 4.35
73 74 1.065701 CCTTTGATCCTCGACGATCGT 59.934 52.381 22.97 22.97 41.39 3.73
74 75 1.333931 TCCTTTGATCCTCGACGATCG 59.666 52.381 14.88 14.88 41.39 3.69
75 76 2.359531 ACTCCTTTGATCCTCGACGATC 59.640 50.000 15.11 15.11 39.35 3.69
76 77 2.379972 ACTCCTTTGATCCTCGACGAT 58.620 47.619 0.00 0.00 0.00 3.73
77 78 1.835494 ACTCCTTTGATCCTCGACGA 58.165 50.000 0.00 0.00 0.00 4.20
78 79 2.541999 GCTACTCCTTTGATCCTCGACG 60.542 54.545 0.00 0.00 0.00 5.12
79 80 2.223852 GGCTACTCCTTTGATCCTCGAC 60.224 54.545 0.00 0.00 0.00 4.20
80 81 2.032620 GGCTACTCCTTTGATCCTCGA 58.967 52.381 0.00 0.00 0.00 4.04
81 82 2.035632 AGGCTACTCCTTTGATCCTCG 58.964 52.381 0.00 0.00 44.75 4.63
92 93 5.538433 ACATATCAGAAGAAGAGGCTACTCC 59.462 44.000 0.00 0.00 45.11 3.85
93 94 6.567701 CGACATATCAGAAGAAGAGGCTACTC 60.568 46.154 0.00 0.00 44.31 2.59
94 95 5.240623 CGACATATCAGAAGAAGAGGCTACT 59.759 44.000 0.00 0.00 0.00 2.57
95 96 5.239744 TCGACATATCAGAAGAAGAGGCTAC 59.760 44.000 0.00 0.00 0.00 3.58
96 97 5.377478 TCGACATATCAGAAGAAGAGGCTA 58.623 41.667 0.00 0.00 0.00 3.93
97 98 4.211125 TCGACATATCAGAAGAAGAGGCT 58.789 43.478 0.00 0.00 0.00 4.58
98 99 4.037446 ACTCGACATATCAGAAGAAGAGGC 59.963 45.833 0.00 0.00 0.00 4.70
99 100 5.766150 ACTCGACATATCAGAAGAAGAGG 57.234 43.478 0.00 0.00 0.00 3.69
100 101 7.646130 GGTAAACTCGACATATCAGAAGAAGAG 59.354 40.741 0.00 0.00 0.00 2.85
101 102 7.339721 AGGTAAACTCGACATATCAGAAGAAGA 59.660 37.037 0.00 0.00 0.00 2.87
102 103 7.484975 AGGTAAACTCGACATATCAGAAGAAG 58.515 38.462 0.00 0.00 0.00 2.85
103 104 7.406031 AGGTAAACTCGACATATCAGAAGAA 57.594 36.000 0.00 0.00 0.00 2.52
104 105 7.228906 CCTAGGTAAACTCGACATATCAGAAGA 59.771 40.741 0.00 0.00 0.00 2.87
105 106 7.364200 CCTAGGTAAACTCGACATATCAGAAG 58.636 42.308 0.00 0.00 0.00 2.85
106 107 6.264744 CCCTAGGTAAACTCGACATATCAGAA 59.735 42.308 8.29 0.00 0.00 3.02
107 108 5.768662 CCCTAGGTAAACTCGACATATCAGA 59.231 44.000 8.29 0.00 0.00 3.27
108 109 5.565045 GCCCTAGGTAAACTCGACATATCAG 60.565 48.000 8.29 0.00 0.00 2.90
109 110 4.280174 GCCCTAGGTAAACTCGACATATCA 59.720 45.833 8.29 0.00 0.00 2.15
110 111 4.523558 AGCCCTAGGTAAACTCGACATATC 59.476 45.833 8.29 0.00 0.00 1.63
111 112 4.481072 AGCCCTAGGTAAACTCGACATAT 58.519 43.478 8.29 0.00 0.00 1.78
112 113 3.907221 AGCCCTAGGTAAACTCGACATA 58.093 45.455 8.29 0.00 0.00 2.29
113 114 2.748388 AGCCCTAGGTAAACTCGACAT 58.252 47.619 8.29 0.00 0.00 3.06
114 115 2.226962 AGCCCTAGGTAAACTCGACA 57.773 50.000 8.29 0.00 0.00 4.35
115 116 2.159128 GGAAGCCCTAGGTAAACTCGAC 60.159 54.545 8.29 0.00 0.00 4.20
116 117 2.105766 GGAAGCCCTAGGTAAACTCGA 58.894 52.381 8.29 0.00 0.00 4.04
117 118 2.101082 GAGGAAGCCCTAGGTAAACTCG 59.899 54.545 8.29 0.00 44.53 4.18
118 119 2.435069 GGAGGAAGCCCTAGGTAAACTC 59.565 54.545 8.29 8.38 44.53 3.01
119 120 2.225805 TGGAGGAAGCCCTAGGTAAACT 60.226 50.000 8.29 0.00 44.53 2.66
120 121 2.170817 CTGGAGGAAGCCCTAGGTAAAC 59.829 54.545 8.29 0.00 44.53 2.01
121 122 2.225805 ACTGGAGGAAGCCCTAGGTAAA 60.226 50.000 8.29 0.00 44.53 2.01
122 123 1.365028 ACTGGAGGAAGCCCTAGGTAA 59.635 52.381 8.29 0.00 44.53 2.85
123 124 1.016415 ACTGGAGGAAGCCCTAGGTA 58.984 55.000 8.29 0.00 44.53 3.08
124 125 0.119358 AACTGGAGGAAGCCCTAGGT 59.881 55.000 8.29 0.00 44.53 3.08
125 126 1.210722 GAAACTGGAGGAAGCCCTAGG 59.789 57.143 0.06 0.06 44.53 3.02
126 127 2.192263 AGAAACTGGAGGAAGCCCTAG 58.808 52.381 0.00 0.00 44.53 3.02
127 128 2.344093 AGAAACTGGAGGAAGCCCTA 57.656 50.000 0.00 0.00 44.53 3.53
129 130 1.614583 GGAAGAAACTGGAGGAAGCCC 60.615 57.143 0.00 0.00 0.00 5.19
130 131 1.352687 AGGAAGAAACTGGAGGAAGCC 59.647 52.381 0.00 0.00 0.00 4.35
131 132 2.816672 CAAGGAAGAAACTGGAGGAAGC 59.183 50.000 0.00 0.00 0.00 3.86
132 133 2.816672 GCAAGGAAGAAACTGGAGGAAG 59.183 50.000 0.00 0.00 0.00 3.46
133 134 2.174639 TGCAAGGAAGAAACTGGAGGAA 59.825 45.455 0.00 0.00 0.00 3.36
134 135 1.774254 TGCAAGGAAGAAACTGGAGGA 59.226 47.619 0.00 0.00 0.00 3.71
135 136 2.157738 CTGCAAGGAAGAAACTGGAGG 58.842 52.381 0.00 0.00 0.00 4.30
136 137 1.538950 GCTGCAAGGAAGAAACTGGAG 59.461 52.381 0.00 0.00 0.00 3.86
137 138 1.609208 GCTGCAAGGAAGAAACTGGA 58.391 50.000 0.00 0.00 0.00 3.86
138 139 0.239347 CGCTGCAAGGAAGAAACTGG 59.761 55.000 0.00 0.00 0.00 4.00
139 140 0.386478 GCGCTGCAAGGAAGAAACTG 60.386 55.000 0.00 0.00 0.00 3.16
140 141 1.845809 CGCGCTGCAAGGAAGAAACT 61.846 55.000 5.56 0.00 0.00 2.66
141 142 1.441016 CGCGCTGCAAGGAAGAAAC 60.441 57.895 5.56 0.00 0.00 2.78
142 143 2.945984 CGCGCTGCAAGGAAGAAA 59.054 55.556 5.56 0.00 0.00 2.52
143 144 3.726517 GCGCGCTGCAAGGAAGAA 61.727 61.111 26.67 0.00 45.45 2.52
203 204 2.441532 CAAGATGGCTGCCCAGGG 60.442 66.667 17.53 0.00 46.24 4.45
204 205 3.145551 GCAAGATGGCTGCCCAGG 61.146 66.667 17.53 2.39 46.24 4.45
205 206 2.361992 TGCAAGATGGCTGCCCAG 60.362 61.111 17.53 2.42 46.24 4.45
210 211 2.749044 ACCGCTGCAAGATGGCTG 60.749 61.111 0.00 0.00 34.71 4.85
211 212 2.437359 GACCGCTGCAAGATGGCT 60.437 61.111 0.00 0.00 34.71 4.75
212 213 2.593468 TAGGACCGCTGCAAGATGGC 62.593 60.000 0.00 0.00 34.71 4.40
213 214 0.107703 TTAGGACCGCTGCAAGATGG 60.108 55.000 0.00 0.00 37.09 3.51
214 215 1.869767 GATTAGGACCGCTGCAAGATG 59.130 52.381 0.00 0.00 34.07 2.90
215 216 1.765314 AGATTAGGACCGCTGCAAGAT 59.235 47.619 0.00 0.00 34.07 2.40
216 217 1.137086 GAGATTAGGACCGCTGCAAGA 59.863 52.381 0.00 0.00 34.07 3.02
217 218 1.134699 TGAGATTAGGACCGCTGCAAG 60.135 52.381 0.00 0.00 0.00 4.01
218 219 0.901827 TGAGATTAGGACCGCTGCAA 59.098 50.000 0.00 0.00 0.00 4.08
219 220 0.175760 GTGAGATTAGGACCGCTGCA 59.824 55.000 0.00 0.00 0.00 4.41
220 221 0.530870 GGTGAGATTAGGACCGCTGC 60.531 60.000 0.00 0.00 0.00 5.25
221 222 0.105039 GGGTGAGATTAGGACCGCTG 59.895 60.000 0.00 0.00 0.00 5.18
222 223 1.049289 GGGGTGAGATTAGGACCGCT 61.049 60.000 0.00 0.00 39.13 5.52
223 224 1.446366 GGGGTGAGATTAGGACCGC 59.554 63.158 0.00 0.00 35.78 5.68
224 225 1.745320 CGGGGGTGAGATTAGGACCG 61.745 65.000 0.00 0.00 0.00 4.79
225 226 0.690077 ACGGGGGTGAGATTAGGACC 60.690 60.000 0.00 0.00 0.00 4.46
226 227 1.134491 CAACGGGGGTGAGATTAGGAC 60.134 57.143 0.00 0.00 0.00 3.85
227 228 1.200519 CAACGGGGGTGAGATTAGGA 58.799 55.000 0.00 0.00 0.00 2.94
228 229 1.134491 GTCAACGGGGGTGAGATTAGG 60.134 57.143 0.00 0.00 0.00 2.69
229 230 1.831736 AGTCAACGGGGGTGAGATTAG 59.168 52.381 0.00 0.00 0.00 1.73
230 231 1.553248 CAGTCAACGGGGGTGAGATTA 59.447 52.381 0.00 0.00 0.00 1.75
231 232 0.324943 CAGTCAACGGGGGTGAGATT 59.675 55.000 0.00 0.00 0.00 2.40
232 233 0.544357 TCAGTCAACGGGGGTGAGAT 60.544 55.000 0.00 0.00 0.00 2.75
233 234 0.544357 ATCAGTCAACGGGGGTGAGA 60.544 55.000 0.00 0.00 0.00 3.27
234 235 0.108138 GATCAGTCAACGGGGGTGAG 60.108 60.000 0.00 0.00 0.00 3.51
235 236 0.544357 AGATCAGTCAACGGGGGTGA 60.544 55.000 0.00 0.00 0.00 4.02
236 237 0.108138 GAGATCAGTCAACGGGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
237 238 1.265454 GGAGATCAGTCAACGGGGGT 61.265 60.000 0.00 0.00 0.00 4.95
238 239 1.522569 GGAGATCAGTCAACGGGGG 59.477 63.158 0.00 0.00 0.00 5.40
239 240 1.141881 CGGAGATCAGTCAACGGGG 59.858 63.158 0.00 0.00 0.00 5.73
240 241 1.141881 CCGGAGATCAGTCAACGGG 59.858 63.158 0.00 0.00 40.21 5.28
241 242 1.141881 CCCGGAGATCAGTCAACGG 59.858 63.158 0.73 0.00 42.16 4.44
242 243 1.519455 GCCCGGAGATCAGTCAACG 60.519 63.158 0.73 0.00 0.00 4.10
243 244 1.519455 CGCCCGGAGATCAGTCAAC 60.519 63.158 0.73 0.00 0.00 3.18
244 245 1.254975 TTCGCCCGGAGATCAGTCAA 61.255 55.000 0.73 0.00 0.00 3.18
245 246 1.667154 CTTCGCCCGGAGATCAGTCA 61.667 60.000 0.73 0.00 0.00 3.41
246 247 1.066587 CTTCGCCCGGAGATCAGTC 59.933 63.158 0.73 0.00 0.00 3.51
247 248 1.379977 TCTTCGCCCGGAGATCAGT 60.380 57.895 0.73 0.00 0.00 3.41
248 249 1.066587 GTCTTCGCCCGGAGATCAG 59.933 63.158 0.73 0.00 0.00 2.90
249 250 1.254975 TTGTCTTCGCCCGGAGATCA 61.255 55.000 0.73 0.35 0.00 2.92
250 251 0.528684 CTTGTCTTCGCCCGGAGATC 60.529 60.000 0.73 0.00 0.00 2.75
251 252 1.258445 ACTTGTCTTCGCCCGGAGAT 61.258 55.000 0.73 0.00 0.00 2.75
252 253 1.469335 AACTTGTCTTCGCCCGGAGA 61.469 55.000 0.73 0.00 0.00 3.71
253 254 1.004918 AACTTGTCTTCGCCCGGAG 60.005 57.895 0.73 0.00 0.00 4.63
254 255 1.005394 GAACTTGTCTTCGCCCGGA 60.005 57.895 0.73 0.00 0.00 5.14
255 256 2.033194 GGAACTTGTCTTCGCCCGG 61.033 63.158 0.00 0.00 0.00 5.73
256 257 1.301401 TGGAACTTGTCTTCGCCCG 60.301 57.895 0.00 0.00 0.00 6.13
257 258 1.566018 CGTGGAACTTGTCTTCGCCC 61.566 60.000 0.00 0.00 31.75 6.13
258 259 0.878961 ACGTGGAACTTGTCTTCGCC 60.879 55.000 0.00 0.00 31.75 5.54
259 260 0.507358 GACGTGGAACTTGTCTTCGC 59.493 55.000 0.00 0.00 32.17 4.70
260 261 1.847818 TGACGTGGAACTTGTCTTCG 58.152 50.000 0.00 0.00 35.02 3.79
261 262 4.340263 GTTTTGACGTGGAACTTGTCTTC 58.660 43.478 0.00 0.00 35.02 2.87
262 263 3.128068 GGTTTTGACGTGGAACTTGTCTT 59.872 43.478 0.00 0.00 35.02 3.01
263 264 2.681344 GGTTTTGACGTGGAACTTGTCT 59.319 45.455 0.00 0.00 35.02 3.41
264 265 2.223409 GGGTTTTGACGTGGAACTTGTC 60.223 50.000 0.00 0.00 34.65 3.18
265 266 1.746787 GGGTTTTGACGTGGAACTTGT 59.253 47.619 0.00 0.00 31.75 3.16
266 267 2.021457 AGGGTTTTGACGTGGAACTTG 58.979 47.619 0.00 0.00 31.75 3.16
267 268 2.430248 AGGGTTTTGACGTGGAACTT 57.570 45.000 0.00 0.00 31.75 2.66
268 269 2.436911 ACTAGGGTTTTGACGTGGAACT 59.563 45.455 0.00 0.00 31.75 3.01
269 270 2.804527 GACTAGGGTTTTGACGTGGAAC 59.195 50.000 0.00 0.00 0.00 3.62
270 271 2.546373 CGACTAGGGTTTTGACGTGGAA 60.546 50.000 0.00 0.00 0.00 3.53
271 272 1.000060 CGACTAGGGTTTTGACGTGGA 60.000 52.381 0.00 0.00 0.00 4.02
272 273 1.425412 CGACTAGGGTTTTGACGTGG 58.575 55.000 0.00 0.00 0.00 4.94
273 274 0.788391 GCGACTAGGGTTTTGACGTG 59.212 55.000 0.00 0.00 0.00 4.49
274 275 0.320160 GGCGACTAGGGTTTTGACGT 60.320 55.000 0.00 0.00 0.00 4.34
275 276 0.320073 TGGCGACTAGGGTTTTGACG 60.320 55.000 0.00 0.00 0.00 4.35
276 277 1.154197 GTGGCGACTAGGGTTTTGAC 58.846 55.000 0.00 0.00 0.00 3.18
277 278 0.035739 GGTGGCGACTAGGGTTTTGA 59.964 55.000 0.00 0.00 0.00 2.69
278 279 0.250553 TGGTGGCGACTAGGGTTTTG 60.251 55.000 0.00 0.00 0.00 2.44
279 280 0.036306 CTGGTGGCGACTAGGGTTTT 59.964 55.000 4.22 0.00 0.00 2.43
280 281 1.677552 CTGGTGGCGACTAGGGTTT 59.322 57.895 4.22 0.00 0.00 3.27
281 282 2.955881 GCTGGTGGCGACTAGGGTT 61.956 63.158 13.86 0.00 31.39 4.11
282 283 3.391382 GCTGGTGGCGACTAGGGT 61.391 66.667 13.86 0.00 31.39 4.34
300 301 3.373565 CAAAACCCCTCTGGCGGC 61.374 66.667 0.00 0.00 37.83 6.53
301 302 2.676471 CCAAAACCCCTCTGGCGG 60.676 66.667 0.00 0.00 37.83 6.13
302 303 2.676471 CCCAAAACCCCTCTGGCG 60.676 66.667 0.00 0.00 37.83 5.69
303 304 2.283894 CCCCAAAACCCCTCTGGC 60.284 66.667 0.00 0.00 37.83 4.85
304 305 0.189822 TTTCCCCAAAACCCCTCTGG 59.810 55.000 0.00 0.00 41.37 3.86
305 306 2.095604 TTTTCCCCAAAACCCCTCTG 57.904 50.000 0.00 0.00 0.00 3.35
306 307 2.879208 TTTTTCCCCAAAACCCCTCT 57.121 45.000 0.00 0.00 30.89 3.69
322 323 3.374058 CGCATCGGTGATCCTAAGTTTTT 59.626 43.478 0.00 0.00 0.00 1.94
323 324 2.936498 CGCATCGGTGATCCTAAGTTTT 59.064 45.455 0.00 0.00 0.00 2.43
324 325 2.167693 TCGCATCGGTGATCCTAAGTTT 59.832 45.455 0.00 0.00 0.00 2.66
325 326 1.754803 TCGCATCGGTGATCCTAAGTT 59.245 47.619 0.00 0.00 0.00 2.66
326 327 1.399714 TCGCATCGGTGATCCTAAGT 58.600 50.000 0.00 0.00 0.00 2.24
327 328 2.128035 GTTCGCATCGGTGATCCTAAG 58.872 52.381 0.00 0.00 32.68 2.18
328 329 1.754803 AGTTCGCATCGGTGATCCTAA 59.245 47.619 0.00 0.00 32.68 2.69
329 330 1.067060 CAGTTCGCATCGGTGATCCTA 59.933 52.381 0.00 0.00 32.68 2.94
330 331 0.179100 CAGTTCGCATCGGTGATCCT 60.179 55.000 0.00 0.00 32.68 3.24
331 332 0.179111 TCAGTTCGCATCGGTGATCC 60.179 55.000 0.00 0.00 32.68 3.36
332 333 1.640428 TTCAGTTCGCATCGGTGATC 58.360 50.000 0.00 0.00 32.68 2.92
333 334 2.002586 CTTTCAGTTCGCATCGGTGAT 58.997 47.619 0.00 0.00 32.68 3.06
334 335 1.428448 CTTTCAGTTCGCATCGGTGA 58.572 50.000 0.00 0.00 0.00 4.02
335 336 0.179215 GCTTTCAGTTCGCATCGGTG 60.179 55.000 0.00 0.00 0.00 4.94
336 337 1.298859 GGCTTTCAGTTCGCATCGGT 61.299 55.000 0.00 0.00 0.00 4.69
337 338 1.298157 TGGCTTTCAGTTCGCATCGG 61.298 55.000 0.00 0.00 0.00 4.18
338 339 0.179215 GTGGCTTTCAGTTCGCATCG 60.179 55.000 0.00 0.00 0.00 3.84
339 340 0.169009 GGTGGCTTTCAGTTCGCATC 59.831 55.000 0.00 0.00 0.00 3.91
340 341 0.537143 TGGTGGCTTTCAGTTCGCAT 60.537 50.000 0.00 0.00 0.00 4.73
341 342 1.153066 TGGTGGCTTTCAGTTCGCA 60.153 52.632 0.00 0.00 0.00 5.10
342 343 1.166531 ACTGGTGGCTTTCAGTTCGC 61.167 55.000 0.00 0.00 40.91 4.70
343 344 3.006672 ACTGGTGGCTTTCAGTTCG 57.993 52.632 0.00 0.00 40.91 3.95
346 347 1.680338 GTCAACTGGTGGCTTTCAGT 58.320 50.000 0.00 0.00 45.06 3.41
347 348 0.588252 CGTCAACTGGTGGCTTTCAG 59.412 55.000 0.00 0.00 37.07 3.02
348 349 1.444119 GCGTCAACTGGTGGCTTTCA 61.444 55.000 0.00 0.00 0.00 2.69
349 350 1.166531 AGCGTCAACTGGTGGCTTTC 61.167 55.000 0.00 0.00 0.00 2.62
350 351 0.751643 AAGCGTCAACTGGTGGCTTT 60.752 50.000 3.73 0.00 40.78 3.51
351 352 1.152963 AAGCGTCAACTGGTGGCTT 60.153 52.632 3.73 3.73 38.99 4.35
352 353 1.893808 CAAGCGTCAACTGGTGGCT 60.894 57.895 0.00 0.00 35.01 4.75
353 354 2.639286 CAAGCGTCAACTGGTGGC 59.361 61.111 0.00 0.00 0.00 5.01
354 355 1.525995 ACCAAGCGTCAACTGGTGG 60.526 57.895 0.00 0.00 0.00 4.61
355 356 1.648720 CACCAAGCGTCAACTGGTG 59.351 57.895 6.10 6.10 43.06 4.17
356 357 2.186826 GCACCAAGCGTCAACTGGT 61.187 57.895 0.00 0.00 0.00 4.00
357 358 2.639286 GCACCAAGCGTCAACTGG 59.361 61.111 0.00 0.00 0.00 4.00
371 372 2.977578 TCTCAGTAGACTGGGGCAC 58.022 57.895 9.65 0.00 44.49 5.01
380 381 3.203263 AGATGTGGCTAGGTCTCAGTAGA 59.797 47.826 0.00 0.00 0.00 2.59
381 382 3.561143 AGATGTGGCTAGGTCTCAGTAG 58.439 50.000 0.00 0.00 0.00 2.57
382 383 3.671740 AGATGTGGCTAGGTCTCAGTA 57.328 47.619 0.00 0.00 0.00 2.74
383 384 2.541233 AGATGTGGCTAGGTCTCAGT 57.459 50.000 0.00 0.00 0.00 3.41
384 385 3.902881 AAAGATGTGGCTAGGTCTCAG 57.097 47.619 0.00 0.00 0.00 3.35
385 386 4.202461 ACAAAAAGATGTGGCTAGGTCTCA 60.202 41.667 0.00 0.00 30.82 3.27
386 387 4.327680 ACAAAAAGATGTGGCTAGGTCTC 58.672 43.478 0.00 0.00 30.82 3.36
387 388 4.373156 ACAAAAAGATGTGGCTAGGTCT 57.627 40.909 0.00 0.00 30.82 3.85
388 389 6.569179 TTTACAAAAAGATGTGGCTAGGTC 57.431 37.500 0.00 0.00 34.75 3.85
389 390 6.549736 ACTTTTACAAAAAGATGTGGCTAGGT 59.450 34.615 16.74 0.00 34.75 3.08
390 391 6.981722 ACTTTTACAAAAAGATGTGGCTAGG 58.018 36.000 16.74 0.00 34.75 3.02
391 392 8.134895 TCAACTTTTACAAAAAGATGTGGCTAG 58.865 33.333 16.74 0.00 33.49 3.42
392 393 7.918562 GTCAACTTTTACAAAAAGATGTGGCTA 59.081 33.333 16.74 0.00 33.49 3.93
393 394 6.756542 GTCAACTTTTACAAAAAGATGTGGCT 59.243 34.615 16.74 0.00 33.49 4.75
394 395 6.533367 TGTCAACTTTTACAAAAAGATGTGGC 59.467 34.615 16.74 12.92 33.49 5.01
395 396 7.973388 TCTGTCAACTTTTACAAAAAGATGTGG 59.027 33.333 16.74 10.32 33.49 4.17
396 397 8.909708 TCTGTCAACTTTTACAAAAAGATGTG 57.090 30.769 16.74 11.66 33.49 3.21
408 409 9.743057 CCACAAACATTTATCTGTCAACTTTTA 57.257 29.630 0.00 0.00 0.00 1.52
409 410 8.257306 ACCACAAACATTTATCTGTCAACTTTT 58.743 29.630 0.00 0.00 0.00 2.27
410 411 7.781056 ACCACAAACATTTATCTGTCAACTTT 58.219 30.769 0.00 0.00 0.00 2.66
411 412 7.346751 ACCACAAACATTTATCTGTCAACTT 57.653 32.000 0.00 0.00 0.00 2.66
412 413 6.959639 ACCACAAACATTTATCTGTCAACT 57.040 33.333 0.00 0.00 0.00 3.16
413 414 9.341899 GATAACCACAAACATTTATCTGTCAAC 57.658 33.333 0.00 0.00 0.00 3.18
414 415 9.295825 AGATAACCACAAACATTTATCTGTCAA 57.704 29.630 2.63 0.00 32.43 3.18
415 416 8.862325 AGATAACCACAAACATTTATCTGTCA 57.138 30.769 2.63 0.00 32.43 3.58
417 418 9.912634 CAAAGATAACCACAAACATTTATCTGT 57.087 29.630 4.00 0.00 33.53 3.41
418 419 9.912634 ACAAAGATAACCACAAACATTTATCTG 57.087 29.630 4.00 0.00 33.53 2.90
422 423 9.877178 ACAAACAAAGATAACCACAAACATTTA 57.123 25.926 0.00 0.00 0.00 1.40
423 424 8.785329 ACAAACAAAGATAACCACAAACATTT 57.215 26.923 0.00 0.00 0.00 2.32
424 425 8.785329 AACAAACAAAGATAACCACAAACATT 57.215 26.923 0.00 0.00 0.00 2.71
425 426 8.257306 AGAACAAACAAAGATAACCACAAACAT 58.743 29.630 0.00 0.00 0.00 2.71
426 427 7.607250 AGAACAAACAAAGATAACCACAAACA 58.393 30.769 0.00 0.00 0.00 2.83
427 428 9.744468 ATAGAACAAACAAAGATAACCACAAAC 57.256 29.630 0.00 0.00 0.00 2.93
429 430 9.743057 CAATAGAACAAACAAAGATAACCACAA 57.257 29.630 0.00 0.00 0.00 3.33
430 431 7.865385 GCAATAGAACAAACAAAGATAACCACA 59.135 33.333 0.00 0.00 0.00 4.17
431 432 7.328493 GGCAATAGAACAAACAAAGATAACCAC 59.672 37.037 0.00 0.00 0.00 4.16
432 433 7.232534 AGGCAATAGAACAAACAAAGATAACCA 59.767 33.333 0.00 0.00 0.00 3.67
433 434 7.602753 AGGCAATAGAACAAACAAAGATAACC 58.397 34.615 0.00 0.00 0.00 2.85
434 435 8.915654 CAAGGCAATAGAACAAACAAAGATAAC 58.084 33.333 0.00 0.00 0.00 1.89
448 449 3.254657 CGGAACAAACCAAGGCAATAGAA 59.745 43.478 0.00 0.00 0.00 2.10
454 455 2.570415 TATCGGAACAAACCAAGGCA 57.430 45.000 0.00 0.00 0.00 4.75
455 456 5.767816 AATATATCGGAACAAACCAAGGC 57.232 39.130 0.00 0.00 0.00 4.35
456 457 6.503524 CCAAATATATCGGAACAAACCAAGG 58.496 40.000 0.00 0.00 0.00 3.61
470 475 6.514947 TGCAGTTGAAATGGCCAAATATATC 58.485 36.000 10.96 2.56 0.00 1.63
471 476 6.482898 TGCAGTTGAAATGGCCAAATATAT 57.517 33.333 10.96 0.00 0.00 0.86
473 478 4.822685 TGCAGTTGAAATGGCCAAATAT 57.177 36.364 10.96 0.00 0.00 1.28
475 480 3.140623 GTTGCAGTTGAAATGGCCAAAT 58.859 40.909 10.96 0.00 0.00 2.32
482 487 4.431809 TGGAAAGTGTTGCAGTTGAAATG 58.568 39.130 0.00 0.00 30.64 2.32
557 564 1.301716 GCTTTGGTGTCTCCTGCGA 60.302 57.895 0.00 0.00 37.07 5.10
558 565 2.671177 CGCTTTGGTGTCTCCTGCG 61.671 63.158 10.33 10.33 41.25 5.18
563 570 2.946762 GGCACGCTTTGGTGTCTC 59.053 61.111 0.00 0.00 39.40 3.36
566 573 0.602905 GAGTAGGCACGCTTTGGTGT 60.603 55.000 0.00 0.00 40.08 4.16
567 574 1.298859 GGAGTAGGCACGCTTTGGTG 61.299 60.000 0.00 0.00 40.89 4.17
586 593 3.771577 ACCTGGAAGTTTGTACTGGAG 57.228 47.619 0.00 0.00 34.01 3.86
589 596 6.202516 TGAAAAACCTGGAAGTTTGTACTG 57.797 37.500 0.00 0.00 39.83 2.74
608 615 0.394488 TTGCCTGTCACGGGTTGAAA 60.394 50.000 4.05 0.00 35.39 2.69
609 616 0.394488 TTTGCCTGTCACGGGTTGAA 60.394 50.000 4.05 0.00 35.39 2.69
671 678 1.892862 TTGTTTGTACGTGCCCCCG 60.893 57.895 0.00 0.00 0.00 5.73
694 705 4.202326 ACTCTTGATGGGTTGTTCGTTACT 60.202 41.667 0.00 0.00 0.00 2.24
708 719 2.158449 GCACTCGTTTGGACTCTTGATG 59.842 50.000 0.00 0.00 0.00 3.07
828 843 4.385405 GTGTGGCTCTGGCTCGCT 62.385 66.667 0.00 0.00 38.73 4.93
965 993 2.193248 GGGGCGAGATTGGGGAAG 59.807 66.667 0.00 0.00 0.00 3.46
966 994 3.416880 GGGGGCGAGATTGGGGAA 61.417 66.667 0.00 0.00 0.00 3.97
1026 1060 4.443266 ACGAGAAGGAGCAGCGGC 62.443 66.667 0.00 0.00 41.61 6.53
1028 1062 2.578178 CGACGAGAAGGAGCAGCG 60.578 66.667 0.00 0.00 0.00 5.18
1029 1063 2.883253 GCGACGAGAAGGAGCAGC 60.883 66.667 0.00 0.00 0.00 5.25
1030 1064 2.202676 GGCGACGAGAAGGAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
1074 1108 1.823041 GTACGTCCTCTCCCCTCCG 60.823 68.421 0.00 0.00 0.00 4.63
1242 1276 2.107141 GACATCCGGGCCGAGAAG 59.893 66.667 30.79 21.08 0.00 2.85
1770 1804 2.198426 CCCACCCAGCACACCTTT 59.802 61.111 0.00 0.00 0.00 3.11
1902 1936 3.369400 CCGAACGCCCCAATTGCA 61.369 61.111 0.00 0.00 0.00 4.08
1923 1957 1.376424 AACGATGCCAGCCTCTGTG 60.376 57.895 0.00 0.00 0.00 3.66
1980 2014 1.514678 GCGCCACATTGGTCACAGAA 61.515 55.000 0.00 0.00 40.46 3.02
2544 2581 4.545706 TTCAGGCCGGGCGCTATG 62.546 66.667 23.81 15.58 37.74 2.23
2550 2587 4.115199 AGGATGTTCAGGCCGGGC 62.115 66.667 22.67 22.67 0.00 6.13
2787 2824 3.692406 ACCTTGCCGGTCGACTCC 61.692 66.667 16.46 4.68 44.93 3.85
3044 3081 1.443828 GTCCTCATCCTCGCCTTCC 59.556 63.158 0.00 0.00 0.00 3.46
3204 3241 4.065281 GCGGCCTCCACGTGTACT 62.065 66.667 15.65 0.00 0.00 2.73
3321 3358 4.268939 TGCACTGGCGCTTGCAAC 62.269 61.111 23.37 1.02 45.65 4.17
3345 3382 2.668212 TTTTCAGTGAGCCGGCCG 60.668 61.111 26.15 21.04 0.00 6.13
3373 3425 1.888436 AACTTGGCCTGCTCGATCGA 61.888 55.000 18.32 18.32 0.00 3.59
3374 3426 0.179111 TAACTTGGCCTGCTCGATCG 60.179 55.000 9.36 9.36 0.00 3.69
3375 3427 1.666189 GTTAACTTGGCCTGCTCGATC 59.334 52.381 3.32 0.00 0.00 3.69
3376 3428 1.003118 TGTTAACTTGGCCTGCTCGAT 59.997 47.619 3.32 0.00 0.00 3.59
3377 3429 0.394938 TGTTAACTTGGCCTGCTCGA 59.605 50.000 3.32 0.00 0.00 4.04
3378 3430 0.517316 GTGTTAACTTGGCCTGCTCG 59.483 55.000 3.32 0.00 0.00 5.03
3379 3431 0.517316 CGTGTTAACTTGGCCTGCTC 59.483 55.000 3.32 0.00 0.00 4.26
3380 3432 0.107831 TCGTGTTAACTTGGCCTGCT 59.892 50.000 3.32 0.00 0.00 4.24
3381 3433 1.130561 GATCGTGTTAACTTGGCCTGC 59.869 52.381 3.32 0.00 0.00 4.85
3382 3434 2.673368 GAGATCGTGTTAACTTGGCCTG 59.327 50.000 3.32 0.00 0.00 4.85
3383 3435 2.354805 GGAGATCGTGTTAACTTGGCCT 60.355 50.000 3.32 0.00 0.00 5.19
3384 3436 2.007608 GGAGATCGTGTTAACTTGGCC 58.992 52.381 7.22 0.00 0.00 5.36
3416 3468 6.591834 ACCACTAGTAGTAAGTACAGTACGTG 59.408 42.308 9.23 6.13 33.55 4.49
3421 3473 9.917887 ATCATAACCACTAGTAGTAAGTACAGT 57.082 33.333 1.57 0.00 33.55 3.55
3426 3478 9.263446 TCCAAATCATAACCACTAGTAGTAAGT 57.737 33.333 1.57 0.86 0.00 2.24
3530 3603 8.860128 CGTGTATTTATACTGCGATGTTATGAT 58.140 33.333 9.90 0.00 35.81 2.45
3532 3605 7.115805 ACCGTGTATTTATACTGCGATGTTATG 59.884 37.037 14.25 4.18 35.81 1.90
3533 3606 7.149973 ACCGTGTATTTATACTGCGATGTTAT 58.850 34.615 14.25 0.00 35.81 1.89
3534 3607 6.506147 ACCGTGTATTTATACTGCGATGTTA 58.494 36.000 14.25 0.00 35.81 2.41
3535 3608 5.353938 ACCGTGTATTTATACTGCGATGTT 58.646 37.500 14.25 0.81 35.81 2.71
3536 3609 4.940463 ACCGTGTATTTATACTGCGATGT 58.060 39.130 14.25 0.00 35.81 3.06
3537 3610 5.900339 AACCGTGTATTTATACTGCGATG 57.100 39.130 14.25 5.99 35.81 3.84
3538 3611 8.597662 AATTAACCGTGTATTTATACTGCGAT 57.402 30.769 14.25 8.53 35.81 4.58
3539 3612 9.526713 TTAATTAACCGTGTATTTATACTGCGA 57.473 29.630 14.25 1.77 35.81 5.10
3541 3614 9.868389 GGTTAATTAACCGTGTATTTATACTGC 57.132 33.333 27.29 3.23 45.41 4.40
3579 3664 9.945904 TGTTAGTGTGTCCATATGTTAATTGTA 57.054 29.630 1.24 0.00 0.00 2.41
3580 3665 8.856153 TGTTAGTGTGTCCATATGTTAATTGT 57.144 30.769 1.24 0.00 0.00 2.71
3608 3693 7.428282 TGAAACATCTGTAATTTTCGTAGCA 57.572 32.000 0.00 0.00 31.76 3.49
3635 3724 5.181245 TCTCAAGTTAATCCGGCAAAAGAAG 59.819 40.000 0.00 0.00 0.00 2.85
3664 3753 1.605058 GGTGGCCTCGAGAGCTACAA 61.605 60.000 29.24 12.51 42.93 2.41
3692 3781 1.752498 GTGGATGGATTGCAATGCTCA 59.248 47.619 28.06 20.42 0.00 4.26
3700 3825 0.664761 CATCACCGTGGATGGATTGC 59.335 55.000 0.00 0.00 40.75 3.56
3703 3828 0.107456 GAGCATCACCGTGGATGGAT 59.893 55.000 13.43 0.00 43.85 3.41
3796 3924 6.505044 TGATCTTGTGGTCTGAAATTGATG 57.495 37.500 0.00 0.00 0.00 3.07
3848 3979 1.466950 CATGGCGCCGACTTTTAGAAA 59.533 47.619 23.90 0.00 0.00 2.52
3853 3984 3.747976 GCCATGGCGCCGACTTTT 61.748 61.111 23.48 0.00 0.00 2.27
3958 4089 0.652592 GGCTGTCATGCACGTATGTC 59.347 55.000 0.00 0.00 34.04 3.06
3968 4099 1.434622 GACGATGCAGGGCTGTCATG 61.435 60.000 0.00 0.00 31.15 3.07
3976 4107 1.135024 CCCAAATTTGACGATGCAGGG 60.135 52.381 19.86 4.95 0.00 4.45
3990 4121 5.896073 ACTAACTGATAGCTAGCCCAAAT 57.104 39.130 12.13 0.00 34.78 2.32
3997 4128 9.619316 CATAAGCTGTTACTAACTGATAGCTAG 57.381 37.037 10.41 0.00 38.93 3.42
4001 4132 7.169982 GTGCCATAAGCTGTTACTAACTGATAG 59.830 40.741 9.40 0.00 44.23 2.08
4012 4145 2.789213 TGCAAGTGCCATAAGCTGTTA 58.211 42.857 0.00 0.00 44.23 2.41
4021 4154 0.760189 ACCACCTTTGCAAGTGCCAT 60.760 50.000 12.18 0.00 41.18 4.40
4023 4156 1.036707 TAACCACCTTTGCAAGTGCC 58.963 50.000 12.18 0.00 41.18 5.01
4024 4157 2.558359 AGATAACCACCTTTGCAAGTGC 59.442 45.455 12.18 0.00 42.50 4.40
4025 4158 5.647658 TGATAGATAACCACCTTTGCAAGTG 59.352 40.000 10.97 10.97 0.00 3.16
4026 4159 5.648092 GTGATAGATAACCACCTTTGCAAGT 59.352 40.000 0.00 0.00 0.00 3.16
4027 4160 5.220662 CGTGATAGATAACCACCTTTGCAAG 60.221 44.000 0.00 0.00 0.00 4.01
4031 4164 5.050490 CCTCGTGATAGATAACCACCTTTG 58.950 45.833 0.00 0.00 0.00 2.77
4032 4165 4.715297 ACCTCGTGATAGATAACCACCTTT 59.285 41.667 0.00 0.00 0.00 3.11
4033 4166 4.287552 ACCTCGTGATAGATAACCACCTT 58.712 43.478 0.00 0.00 0.00 3.50
4034 4167 3.912248 ACCTCGTGATAGATAACCACCT 58.088 45.455 0.00 0.00 0.00 4.00
4035 4168 4.098960 TGAACCTCGTGATAGATAACCACC 59.901 45.833 0.00 0.00 0.00 4.61
4036 4169 5.067413 TCTGAACCTCGTGATAGATAACCAC 59.933 44.000 0.00 0.00 0.00 4.16
4037 4170 5.198207 TCTGAACCTCGTGATAGATAACCA 58.802 41.667 0.00 0.00 0.00 3.67
4038 4171 5.769484 TCTGAACCTCGTGATAGATAACC 57.231 43.478 0.00 0.00 0.00 2.85
4039 4172 8.649973 AATTTCTGAACCTCGTGATAGATAAC 57.350 34.615 0.00 0.00 0.00 1.89
4040 4173 9.098355 CAAATTTCTGAACCTCGTGATAGATAA 57.902 33.333 0.00 0.00 0.00 1.75
4041 4174 7.710907 CCAAATTTCTGAACCTCGTGATAGATA 59.289 37.037 0.00 0.00 0.00 1.98
4042 4175 6.540189 CCAAATTTCTGAACCTCGTGATAGAT 59.460 38.462 0.00 0.00 0.00 1.98
4044 4177 5.874810 TCCAAATTTCTGAACCTCGTGATAG 59.125 40.000 0.00 0.00 0.00 2.08
4068 4202 0.459585 CGGCTACGCAGTTGGTATGT 60.460 55.000 0.00 0.00 37.78 2.29
4077 4211 1.271446 CGTCATGATCGGCTACGCAG 61.271 60.000 0.00 0.00 40.69 5.18
4126 4260 0.652592 GATTTGACAGATCGCACGGG 59.347 55.000 0.00 0.00 0.00 5.28
4132 4266 4.773510 CATGATGCAGATTTGACAGATCG 58.226 43.478 0.00 0.00 0.00 3.69
4134 4268 4.569761 GCATGATGCAGATTTGACAGAT 57.430 40.909 13.36 0.00 44.26 2.90
4168 4302 1.393603 TGAACCAAATGTTGCCGACA 58.606 45.000 0.00 0.00 43.71 4.35
4169 4303 2.034053 TCTTGAACCAAATGTTGCCGAC 59.966 45.455 0.00 0.00 37.29 4.79
4170 4304 2.293122 CTCTTGAACCAAATGTTGCCGA 59.707 45.455 0.00 0.00 37.29 5.54
4171 4305 2.607771 CCTCTTGAACCAAATGTTGCCG 60.608 50.000 0.00 0.00 37.29 5.69
4172 4306 2.627699 TCCTCTTGAACCAAATGTTGCC 59.372 45.455 0.00 0.00 37.29 4.52
4173 4307 4.320608 TTCCTCTTGAACCAAATGTTGC 57.679 40.909 0.00 0.00 37.29 4.17
4174 4308 5.232463 CCATTCCTCTTGAACCAAATGTTG 58.768 41.667 0.00 0.00 37.29 3.33
4175 4309 4.284234 CCCATTCCTCTTGAACCAAATGTT 59.716 41.667 0.00 0.00 40.81 2.71
4177 4311 3.196254 CCCCATTCCTCTTGAACCAAATG 59.804 47.826 0.00 0.00 35.31 2.32
4178 4312 3.181407 ACCCCATTCCTCTTGAACCAAAT 60.181 43.478 0.00 0.00 35.31 2.32
4180 4314 1.786441 ACCCCATTCCTCTTGAACCAA 59.214 47.619 0.00 0.00 35.31 3.67
4181 4315 1.455822 ACCCCATTCCTCTTGAACCA 58.544 50.000 0.00 0.00 35.31 3.67
4182 4316 2.225017 TGAACCCCATTCCTCTTGAACC 60.225 50.000 0.00 0.00 36.36 3.62
4183 4317 3.084786 CTGAACCCCATTCCTCTTGAAC 58.915 50.000 0.00 0.00 36.36 3.18
4184 4318 2.986019 TCTGAACCCCATTCCTCTTGAA 59.014 45.455 0.00 0.00 36.36 2.69
4186 4320 3.439857 TTCTGAACCCCATTCCTCTTG 57.560 47.619 0.00 0.00 36.36 3.02
4188 4322 2.989571 AGTTTCTGAACCCCATTCCTCT 59.010 45.455 0.00 0.00 36.36 3.69
4190 4324 2.041755 GGAGTTTCTGAACCCCATTCCT 59.958 50.000 0.00 0.00 34.06 3.36
4191 4325 2.041755 AGGAGTTTCTGAACCCCATTCC 59.958 50.000 0.00 0.00 36.19 3.01
4193 4327 3.500471 GGAAGGAGTTTCTGAACCCCATT 60.500 47.826 0.00 0.00 36.19 3.16
4194 4328 2.041755 GGAAGGAGTTTCTGAACCCCAT 59.958 50.000 0.00 0.00 36.19 4.00
4196 4330 1.610886 CGGAAGGAGTTTCTGAACCCC 60.611 57.143 0.00 0.00 43.63 4.95
4198 4332 2.143925 CACGGAAGGAGTTTCTGAACC 58.856 52.381 2.95 0.00 43.63 3.62
4201 4335 1.760613 ACACACGGAAGGAGTTTCTGA 59.239 47.619 2.95 0.00 43.63 3.27
4204 4338 1.226746 CCACACACGGAAGGAGTTTC 58.773 55.000 0.00 0.00 34.93 2.78
4205 4339 0.544697 ACCACACACGGAAGGAGTTT 59.455 50.000 0.00 0.00 0.00 2.66
4207 4341 1.335132 ACACCACACACGGAAGGAGT 61.335 55.000 0.00 0.00 0.00 3.85
4208 4342 0.179056 AACACCACACACGGAAGGAG 60.179 55.000 0.00 0.00 0.00 3.69
4209 4343 0.253610 AAACACCACACACGGAAGGA 59.746 50.000 0.00 0.00 0.00 3.36
4210 4344 1.099689 AAAACACCACACACGGAAGG 58.900 50.000 0.00 0.00 0.00 3.46
4211 4345 4.561735 AATAAAACACCACACACGGAAG 57.438 40.909 0.00 0.00 0.00 3.46
4212 4346 4.275443 GGTAATAAAACACCACACACGGAA 59.725 41.667 0.00 0.00 34.77 4.30
4213 4347 3.814283 GGTAATAAAACACCACACACGGA 59.186 43.478 0.00 0.00 34.77 4.69
4214 4348 3.816523 AGGTAATAAAACACCACACACGG 59.183 43.478 0.00 0.00 37.28 4.94
4215 4349 4.512198 TCAGGTAATAAAACACCACACACG 59.488 41.667 0.00 0.00 37.28 4.49
4216 4350 6.380095 TTCAGGTAATAAAACACCACACAC 57.620 37.500 0.00 0.00 37.28 3.82
4217 4351 5.009210 GCTTCAGGTAATAAAACACCACACA 59.991 40.000 0.00 0.00 37.28 3.72
4221 4355 5.626142 TCAGCTTCAGGTAATAAAACACCA 58.374 37.500 0.00 0.00 37.28 4.17
4224 4358 5.183140 GCCTTCAGCTTCAGGTAATAAAACA 59.817 40.000 9.33 0.00 38.99 2.83
4225 4359 5.641709 GCCTTCAGCTTCAGGTAATAAAAC 58.358 41.667 9.33 0.00 38.99 2.43
4227 4361 3.938963 CGCCTTCAGCTTCAGGTAATAAA 59.061 43.478 9.33 0.00 40.39 1.40
4228 4362 3.196901 TCGCCTTCAGCTTCAGGTAATAA 59.803 43.478 9.33 0.00 40.39 1.40
4229 4363 2.764010 TCGCCTTCAGCTTCAGGTAATA 59.236 45.455 9.33 0.00 40.39 0.98
4230 4364 1.555075 TCGCCTTCAGCTTCAGGTAAT 59.445 47.619 9.33 0.00 40.39 1.89
4261 4406 2.721167 CGGCGACATCCTCTTCCCA 61.721 63.158 0.00 0.00 0.00 4.37
4276 4421 3.324035 GACATGATCGGCTTCGGC 58.676 61.111 0.00 0.00 40.88 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.