Multiple sequence alignment - TraesCS3B01G455400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G455400 chr3B 100.000 3749 0 0 1 3749 696984977 696981229 0.000000e+00 6924.0
1 TraesCS3B01G455400 chr3D 96.555 2845 88 5 913 3749 527153147 527150305 0.000000e+00 4702.0
2 TraesCS3B01G455400 chr3D 82.514 732 99 14 29 734 610025053 610024325 1.910000e-172 616.0
3 TraesCS3B01G455400 chr3A 95.250 2863 111 7 909 3748 661797410 661794550 0.000000e+00 4510.0
4 TraesCS3B01G455400 chr6B 95.261 1688 71 4 1937 3617 659511267 659509582 0.000000e+00 2665.0
5 TraesCS3B01G455400 chr6B 89.723 973 62 13 981 1938 659533004 659532055 0.000000e+00 1208.0
6 TraesCS3B01G455400 chr6B 88.536 724 48 12 981 1689 659508161 659508864 0.000000e+00 845.0
7 TraesCS3B01G455400 chr6B 97.368 152 3 1 3597 3748 659509281 659509131 1.340000e-64 257.0
8 TraesCS3B01G455400 chr6A 84.321 759 83 24 1 734 524757924 524758671 0.000000e+00 710.0
9 TraesCS3B01G455400 chr7D 83.730 756 89 21 1 734 270162057 270161314 0.000000e+00 684.0
10 TraesCS3B01G455400 chr7D 82.345 759 94 19 1 734 106923448 106922705 1.140000e-174 623.0
11 TraesCS3B01G455400 chr5A 83.095 769 96 14 1 747 649252945 649252189 0.000000e+00 669.0
12 TraesCS3B01G455400 chr5A 82.301 565 68 16 1 541 574944818 574944262 9.490000e-126 460.0
13 TraesCS3B01G455400 chr2D 83.289 754 96 15 2 734 48208857 48209601 0.000000e+00 667.0
14 TraesCS3B01G455400 chr2D 81.506 757 102 28 1 732 353021021 353021764 4.170000e-164 588.0
15 TraesCS3B01G455400 chr7A 82.883 777 95 24 1 751 127373035 127373799 0.000000e+00 664.0
16 TraesCS3B01G455400 chr1B 82.166 757 103 23 1 734 632773659 632772912 4.110000e-174 621.0
17 TraesCS3B01G455400 chr1B 80.000 720 93 38 1 700 65555602 65556290 5.630000e-133 484.0
18 TraesCS3B01G455400 chr4A 82.133 750 100 18 3 728 596578409 596579148 2.480000e-171 612.0
19 TraesCS3B01G455400 chr5D 81.989 744 101 16 1 719 448876320 448875585 5.360000e-168 601.0
20 TraesCS3B01G455400 chr5D 84.314 612 64 12 143 733 520789281 520788681 1.510000e-158 569.0
21 TraesCS3B01G455400 chr1D 83.658 667 70 21 94 734 37416082 37415429 3.220000e-165 592.0
22 TraesCS3B01G455400 chr1D 80.891 539 74 19 2 518 449488850 449488319 7.540000e-107 398.0
23 TraesCS3B01G455400 chr1A 83.902 528 56 10 3 508 45789281 45788761 9.420000e-131 477.0
24 TraesCS3B01G455400 chr2A 87.449 247 27 2 1 243 431073107 431072861 7.930000e-72 281.0
25 TraesCS3B01G455400 chr2B 100.000 28 0 0 748 775 443760755 443760782 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G455400 chr3B 696981229 696984977 3748 True 6924 6924 100.0000 1 3749 1 chr3B.!!$R1 3748
1 TraesCS3B01G455400 chr3D 527150305 527153147 2842 True 4702 4702 96.5550 913 3749 1 chr3D.!!$R1 2836
2 TraesCS3B01G455400 chr3D 610024325 610025053 728 True 616 616 82.5140 29 734 1 chr3D.!!$R2 705
3 TraesCS3B01G455400 chr3A 661794550 661797410 2860 True 4510 4510 95.2500 909 3748 1 chr3A.!!$R1 2839
4 TraesCS3B01G455400 chr6B 659509131 659511267 2136 True 1461 2665 96.3145 1937 3748 2 chr6B.!!$R2 1811
5 TraesCS3B01G455400 chr6B 659532055 659533004 949 True 1208 1208 89.7230 981 1938 1 chr6B.!!$R1 957
6 TraesCS3B01G455400 chr6B 659508161 659508864 703 False 845 845 88.5360 981 1689 1 chr6B.!!$F1 708
7 TraesCS3B01G455400 chr6A 524757924 524758671 747 False 710 710 84.3210 1 734 1 chr6A.!!$F1 733
8 TraesCS3B01G455400 chr7D 270161314 270162057 743 True 684 684 83.7300 1 734 1 chr7D.!!$R2 733
9 TraesCS3B01G455400 chr7D 106922705 106923448 743 True 623 623 82.3450 1 734 1 chr7D.!!$R1 733
10 TraesCS3B01G455400 chr5A 649252189 649252945 756 True 669 669 83.0950 1 747 1 chr5A.!!$R2 746
11 TraesCS3B01G455400 chr5A 574944262 574944818 556 True 460 460 82.3010 1 541 1 chr5A.!!$R1 540
12 TraesCS3B01G455400 chr2D 48208857 48209601 744 False 667 667 83.2890 2 734 1 chr2D.!!$F1 732
13 TraesCS3B01G455400 chr2D 353021021 353021764 743 False 588 588 81.5060 1 732 1 chr2D.!!$F2 731
14 TraesCS3B01G455400 chr7A 127373035 127373799 764 False 664 664 82.8830 1 751 1 chr7A.!!$F1 750
15 TraesCS3B01G455400 chr1B 632772912 632773659 747 True 621 621 82.1660 1 734 1 chr1B.!!$R1 733
16 TraesCS3B01G455400 chr1B 65555602 65556290 688 False 484 484 80.0000 1 700 1 chr1B.!!$F1 699
17 TraesCS3B01G455400 chr4A 596578409 596579148 739 False 612 612 82.1330 3 728 1 chr4A.!!$F1 725
18 TraesCS3B01G455400 chr5D 448875585 448876320 735 True 601 601 81.9890 1 719 1 chr5D.!!$R1 718
19 TraesCS3B01G455400 chr5D 520788681 520789281 600 True 569 569 84.3140 143 733 1 chr5D.!!$R2 590
20 TraesCS3B01G455400 chr1D 37415429 37416082 653 True 592 592 83.6580 94 734 1 chr1D.!!$R1 640
21 TraesCS3B01G455400 chr1D 449488319 449488850 531 True 398 398 80.8910 2 518 1 chr1D.!!$R2 516
22 TraesCS3B01G455400 chr1A 45788761 45789281 520 True 477 477 83.9020 3 508 1 chr1A.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 953 0.108138 ACTGCGAGGGCTTGTGATAC 60.108 55.0 0.0 0.0 40.82 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2855 2944 0.036875 GAAACCCTGGGACACTGAGG 59.963 60.0 22.23 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
284 323 4.090498 CGTGAGGTCGTTATCGTATCGATA 59.910 45.833 0.00 0.00 45.13 2.92
299 338 8.782339 TCGTATCGATAATTACACTATCCAGA 57.218 34.615 6.72 0.00 0.00 3.86
330 376 3.733684 GCATCACCAAGTTTTGTGACGTT 60.734 43.478 7.05 0.00 0.00 3.99
412 462 6.169557 TGCTTCCTCTTACTCAACTTGTTA 57.830 37.500 0.00 0.00 0.00 2.41
415 465 7.387948 TGCTTCCTCTTACTCAACTTGTTAATC 59.612 37.037 0.00 0.00 0.00 1.75
426 479 8.950210 ACTCAACTTGTTAATCGATTCATTCAT 58.050 29.630 15.25 0.00 0.00 2.57
565 633 8.137437 GGAATGACATGATCCGTTGATAAAAAT 58.863 33.333 0.00 0.00 0.00 1.82
599 668 6.346678 GCATCCGGTTAATCTAGTCGAATTTC 60.347 42.308 0.00 0.00 0.00 2.17
694 764 6.162777 TGATGAATATCGGTCGATTTGCATA 58.837 36.000 14.26 4.59 33.78 3.14
703 773 4.202158 CGGTCGATTTGCATAAATTTCGTG 59.798 41.667 0.00 0.00 36.66 4.35
713 783 5.099575 GCATAAATTTCGTGGGGTTAGTTG 58.900 41.667 0.00 0.00 0.00 3.16
742 812 8.267620 TGTGATTTGAAATGTATACAGTCAGG 57.732 34.615 11.91 0.00 0.00 3.86
747 817 6.367374 TGAAATGTATACAGTCAGGGTTGA 57.633 37.500 11.91 0.00 0.00 3.18
748 818 6.957631 TGAAATGTATACAGTCAGGGTTGAT 58.042 36.000 11.91 0.00 35.39 2.57
749 819 6.823182 TGAAATGTATACAGTCAGGGTTGATG 59.177 38.462 11.91 0.00 35.39 3.07
750 820 6.560003 AATGTATACAGTCAGGGTTGATGA 57.440 37.500 11.91 0.00 35.39 2.92
752 822 6.560003 TGTATACAGTCAGGGTTGATGAAT 57.440 37.500 0.08 0.00 35.39 2.57
753 823 6.348498 TGTATACAGTCAGGGTTGATGAATG 58.652 40.000 0.08 2.21 45.62 2.67
754 824 5.698741 ATACAGTCAGGGTTGATGAATGA 57.301 39.130 10.00 0.00 43.54 2.57
755 825 4.371624 ACAGTCAGGGTTGATGAATGAA 57.628 40.909 10.00 0.00 43.54 2.57
756 826 4.927049 ACAGTCAGGGTTGATGAATGAAT 58.073 39.130 10.00 0.00 43.54 2.57
757 827 4.703575 ACAGTCAGGGTTGATGAATGAATG 59.296 41.667 10.00 0.00 43.54 2.67
758 828 3.698040 AGTCAGGGTTGATGAATGAATGC 59.302 43.478 0.00 0.00 35.39 3.56
759 829 2.684374 TCAGGGTTGATGAATGAATGCG 59.316 45.455 0.00 0.00 0.00 4.73
760 830 2.026641 AGGGTTGATGAATGAATGCGG 58.973 47.619 0.00 0.00 0.00 5.69
761 831 1.067516 GGGTTGATGAATGAATGCGGG 59.932 52.381 0.00 0.00 0.00 6.13
762 832 2.023673 GGTTGATGAATGAATGCGGGA 58.976 47.619 0.00 0.00 0.00 5.14
763 833 2.033801 GGTTGATGAATGAATGCGGGAG 59.966 50.000 0.00 0.00 0.00 4.30
764 834 1.971481 TGATGAATGAATGCGGGAGG 58.029 50.000 0.00 0.00 0.00 4.30
765 835 1.490069 TGATGAATGAATGCGGGAGGA 59.510 47.619 0.00 0.00 0.00 3.71
766 836 2.092484 TGATGAATGAATGCGGGAGGAA 60.092 45.455 0.00 0.00 0.00 3.36
767 837 2.505650 TGAATGAATGCGGGAGGAAA 57.494 45.000 0.00 0.00 0.00 3.13
768 838 3.017048 TGAATGAATGCGGGAGGAAAT 57.983 42.857 0.00 0.00 0.00 2.17
769 839 3.364549 TGAATGAATGCGGGAGGAAATT 58.635 40.909 0.00 0.00 0.00 1.82
770 840 3.768757 TGAATGAATGCGGGAGGAAATTT 59.231 39.130 0.00 0.00 0.00 1.82
771 841 4.952957 TGAATGAATGCGGGAGGAAATTTA 59.047 37.500 0.00 0.00 0.00 1.40
772 842 4.918810 ATGAATGCGGGAGGAAATTTAC 57.081 40.909 0.00 0.00 0.00 2.01
773 843 2.680841 TGAATGCGGGAGGAAATTTACG 59.319 45.455 0.00 0.00 0.00 3.18
774 844 1.675552 ATGCGGGAGGAAATTTACGG 58.324 50.000 0.00 0.00 0.00 4.02
775 845 0.614294 TGCGGGAGGAAATTTACGGA 59.386 50.000 0.00 0.00 0.00 4.69
776 846 1.210967 TGCGGGAGGAAATTTACGGAT 59.789 47.619 0.00 0.00 0.00 4.18
777 847 1.871676 GCGGGAGGAAATTTACGGATC 59.128 52.381 0.00 0.00 0.00 3.36
778 848 2.132762 CGGGAGGAAATTTACGGATCG 58.867 52.381 0.00 0.00 0.00 3.69
779 849 1.871676 GGGAGGAAATTTACGGATCGC 59.128 52.381 0.00 0.00 0.00 4.58
780 850 2.484947 GGGAGGAAATTTACGGATCGCT 60.485 50.000 0.00 0.00 0.00 4.93
781 851 2.544267 GGAGGAAATTTACGGATCGCTG 59.456 50.000 0.00 0.00 0.00 5.18
782 852 3.454375 GAGGAAATTTACGGATCGCTGA 58.546 45.455 0.00 0.00 0.00 4.26
783 853 4.058817 GAGGAAATTTACGGATCGCTGAT 58.941 43.478 0.00 0.00 0.00 2.90
784 854 3.809832 AGGAAATTTACGGATCGCTGATG 59.190 43.478 0.00 0.00 0.00 3.07
785 855 3.807622 GGAAATTTACGGATCGCTGATGA 59.192 43.478 0.00 0.00 0.00 2.92
786 856 4.272504 GGAAATTTACGGATCGCTGATGAA 59.727 41.667 0.00 0.00 0.00 2.57
787 857 5.409643 AAATTTACGGATCGCTGATGAAG 57.590 39.130 0.00 0.00 0.00 3.02
788 858 3.793797 TTTACGGATCGCTGATGAAGA 57.206 42.857 0.00 0.00 0.00 2.87
789 859 4.322080 TTTACGGATCGCTGATGAAGAT 57.678 40.909 0.00 0.00 0.00 2.40
790 860 5.447624 TTTACGGATCGCTGATGAAGATA 57.552 39.130 0.00 0.00 0.00 1.98
791 861 3.290308 ACGGATCGCTGATGAAGATAC 57.710 47.619 0.00 0.00 0.00 2.24
792 862 2.029828 ACGGATCGCTGATGAAGATACC 60.030 50.000 0.00 0.00 0.00 2.73
793 863 2.029918 CGGATCGCTGATGAAGATACCA 60.030 50.000 0.00 0.00 0.00 3.25
794 864 3.367806 CGGATCGCTGATGAAGATACCAT 60.368 47.826 0.00 0.00 0.00 3.55
795 865 4.142381 CGGATCGCTGATGAAGATACCATA 60.142 45.833 0.00 0.00 0.00 2.74
796 866 5.622233 CGGATCGCTGATGAAGATACCATAA 60.622 44.000 0.00 0.00 0.00 1.90
797 867 6.344500 GGATCGCTGATGAAGATACCATAAT 58.656 40.000 0.00 0.00 0.00 1.28
798 868 6.820656 GGATCGCTGATGAAGATACCATAATT 59.179 38.462 0.00 0.00 0.00 1.40
799 869 7.010923 GGATCGCTGATGAAGATACCATAATTC 59.989 40.741 0.00 0.00 0.00 2.17
800 870 6.166279 TCGCTGATGAAGATACCATAATTCC 58.834 40.000 0.00 0.00 0.00 3.01
801 871 6.014242 TCGCTGATGAAGATACCATAATTCCT 60.014 38.462 0.00 0.00 0.00 3.36
802 872 6.091849 CGCTGATGAAGATACCATAATTCCTG 59.908 42.308 0.00 0.00 0.00 3.86
803 873 6.373774 GCTGATGAAGATACCATAATTCCTGG 59.626 42.308 5.61 5.61 39.80 4.45
804 874 7.631510 TGATGAAGATACCATAATTCCTGGA 57.368 36.000 12.66 0.00 37.22 3.86
805 875 8.223378 TGATGAAGATACCATAATTCCTGGAT 57.777 34.615 12.66 3.78 37.22 3.41
806 876 8.672329 TGATGAAGATACCATAATTCCTGGATT 58.328 33.333 12.66 0.00 37.22 3.01
807 877 9.525826 GATGAAGATACCATAATTCCTGGATTT 57.474 33.333 12.66 8.70 37.22 2.17
808 878 9.887862 ATGAAGATACCATAATTCCTGGATTTT 57.112 29.630 12.66 3.79 37.22 1.82
809 879 9.713684 TGAAGATACCATAATTCCTGGATTTTT 57.286 29.630 12.66 0.00 37.22 1.94
827 897 2.842208 TTTTAATGCTTCCGGCGATG 57.158 45.000 9.30 0.00 45.43 3.84
828 898 1.745232 TTTAATGCTTCCGGCGATGT 58.255 45.000 9.30 0.00 45.43 3.06
829 899 1.745232 TTAATGCTTCCGGCGATGTT 58.255 45.000 9.30 0.00 45.43 2.71
830 900 1.013596 TAATGCTTCCGGCGATGTTG 58.986 50.000 9.30 0.00 45.43 3.33
831 901 0.960364 AATGCTTCCGGCGATGTTGT 60.960 50.000 9.30 0.00 45.43 3.32
832 902 0.960364 ATGCTTCCGGCGATGTTGTT 60.960 50.000 9.30 0.00 45.43 2.83
833 903 1.134694 GCTTCCGGCGATGTTGTTC 59.865 57.895 9.30 0.00 0.00 3.18
834 904 1.573829 GCTTCCGGCGATGTTGTTCA 61.574 55.000 9.30 0.00 0.00 3.18
835 905 0.871722 CTTCCGGCGATGTTGTTCAA 59.128 50.000 9.30 0.00 0.00 2.69
836 906 1.468520 CTTCCGGCGATGTTGTTCAAT 59.531 47.619 9.30 0.00 0.00 2.57
837 907 0.801872 TCCGGCGATGTTGTTCAATG 59.198 50.000 9.30 0.00 0.00 2.82
838 908 0.801872 CCGGCGATGTTGTTCAATGA 59.198 50.000 9.30 0.00 0.00 2.57
839 909 1.198867 CCGGCGATGTTGTTCAATGAA 59.801 47.619 9.30 0.00 0.00 2.57
840 910 2.351253 CCGGCGATGTTGTTCAATGAAA 60.351 45.455 9.30 0.00 0.00 2.69
841 911 2.910482 CGGCGATGTTGTTCAATGAAAG 59.090 45.455 0.00 0.00 0.00 2.62
842 912 3.244976 GGCGATGTTGTTCAATGAAAGG 58.755 45.455 0.00 0.00 0.00 3.11
843 913 3.057596 GGCGATGTTGTTCAATGAAAGGA 60.058 43.478 0.00 0.00 0.00 3.36
844 914 4.161333 GCGATGTTGTTCAATGAAAGGAG 58.839 43.478 0.00 0.00 0.00 3.69
845 915 4.726416 CGATGTTGTTCAATGAAAGGAGG 58.274 43.478 0.00 0.00 0.00 4.30
846 916 4.488879 GATGTTGTTCAATGAAAGGAGGC 58.511 43.478 0.00 0.00 0.00 4.70
847 917 3.295093 TGTTGTTCAATGAAAGGAGGCA 58.705 40.909 0.00 0.00 0.00 4.75
848 918 3.896888 TGTTGTTCAATGAAAGGAGGCAT 59.103 39.130 0.00 0.00 0.00 4.40
849 919 4.344679 TGTTGTTCAATGAAAGGAGGCATT 59.655 37.500 0.00 0.00 35.24 3.56
850 920 5.163322 TGTTGTTCAATGAAAGGAGGCATTT 60.163 36.000 0.00 0.00 32.74 2.32
851 921 5.138125 TGTTCAATGAAAGGAGGCATTTC 57.862 39.130 0.00 0.00 37.21 2.17
852 922 4.021192 TGTTCAATGAAAGGAGGCATTTCC 60.021 41.667 0.00 0.00 36.11 3.13
853 923 3.777087 TCAATGAAAGGAGGCATTTCCA 58.223 40.909 0.00 0.00 39.84 3.53
854 924 4.355549 TCAATGAAAGGAGGCATTTCCAT 58.644 39.130 0.00 0.00 39.84 3.41
855 925 4.403432 TCAATGAAAGGAGGCATTTCCATC 59.597 41.667 0.00 3.10 39.84 3.51
856 926 2.368439 TGAAAGGAGGCATTTCCATCG 58.632 47.619 0.00 0.00 39.84 3.84
857 927 1.678101 GAAAGGAGGCATTTCCATCGG 59.322 52.381 4.27 0.00 39.84 4.18
858 928 0.918983 AAGGAGGCATTTCCATCGGA 59.081 50.000 4.27 0.00 39.84 4.55
859 929 0.181350 AGGAGGCATTTCCATCGGAC 59.819 55.000 4.27 0.00 39.84 4.79
860 930 0.181350 GGAGGCATTTCCATCGGACT 59.819 55.000 0.00 0.00 37.20 3.85
861 931 1.303309 GAGGCATTTCCATCGGACTG 58.697 55.000 0.00 0.00 37.29 3.51
862 932 0.749454 AGGCATTTCCATCGGACTGC 60.749 55.000 7.81 7.81 38.88 4.40
863 933 1.353103 GCATTTCCATCGGACTGCG 59.647 57.895 2.08 0.00 33.14 5.18
864 934 1.089481 GCATTTCCATCGGACTGCGA 61.089 55.000 0.00 0.00 33.14 5.10
865 935 0.652592 CATTTCCATCGGACTGCGAC 59.347 55.000 0.00 0.00 0.00 5.19
866 936 0.537188 ATTTCCATCGGACTGCGACT 59.463 50.000 0.00 0.00 0.00 4.18
867 937 0.389817 TTTCCATCGGACTGCGACTG 60.390 55.000 0.00 0.00 0.00 3.51
868 938 2.835701 TTCCATCGGACTGCGACTGC 62.836 60.000 0.00 0.00 43.20 4.40
879 949 3.114616 CGACTGCGAGGGCTTGTG 61.115 66.667 0.00 0.00 40.82 3.33
880 950 2.343758 GACTGCGAGGGCTTGTGA 59.656 61.111 0.00 0.00 40.82 3.58
881 951 1.078848 GACTGCGAGGGCTTGTGAT 60.079 57.895 0.00 0.00 40.82 3.06
882 952 0.175760 GACTGCGAGGGCTTGTGATA 59.824 55.000 0.00 0.00 40.82 2.15
883 953 0.108138 ACTGCGAGGGCTTGTGATAC 60.108 55.000 0.00 0.00 40.82 2.24
884 954 0.176680 CTGCGAGGGCTTGTGATACT 59.823 55.000 0.00 0.00 40.82 2.12
885 955 1.409064 CTGCGAGGGCTTGTGATACTA 59.591 52.381 0.00 0.00 40.82 1.82
886 956 1.409064 TGCGAGGGCTTGTGATACTAG 59.591 52.381 0.00 0.00 40.82 2.57
887 957 1.269831 GCGAGGGCTTGTGATACTAGG 60.270 57.143 0.00 0.00 35.83 3.02
888 958 2.307768 CGAGGGCTTGTGATACTAGGA 58.692 52.381 0.00 0.00 0.00 2.94
889 959 2.034812 CGAGGGCTTGTGATACTAGGAC 59.965 54.545 0.00 0.00 0.00 3.85
890 960 2.032620 AGGGCTTGTGATACTAGGACG 58.967 52.381 0.00 0.00 0.00 4.79
891 961 1.755380 GGGCTTGTGATACTAGGACGT 59.245 52.381 0.00 0.00 0.00 4.34
892 962 2.481449 GGGCTTGTGATACTAGGACGTG 60.481 54.545 0.00 0.00 0.00 4.49
893 963 2.426024 GGCTTGTGATACTAGGACGTGA 59.574 50.000 0.00 0.00 0.00 4.35
894 964 3.489398 GGCTTGTGATACTAGGACGTGAG 60.489 52.174 0.00 0.00 0.00 3.51
911 981 3.001330 CGTGAGTGTGTTGAAAAGGAGAC 59.999 47.826 0.00 0.00 0.00 3.36
1049 1121 0.251165 CTCTCGATCCTCCTCTCCCC 60.251 65.000 0.00 0.00 0.00 4.81
1161 1233 2.364448 AACCTCCTCCTCCTCGCC 60.364 66.667 0.00 0.00 0.00 5.54
1468 1554 1.483827 TGATCAGCTTCTACTGCAGGG 59.516 52.381 19.93 10.61 37.59 4.45
1511 1597 2.431942 GGTGTTCGATGACGGCGT 60.432 61.111 14.65 14.65 40.21 5.68
1514 1600 2.809601 GTTCGATGACGGCGTGCT 60.810 61.111 21.19 3.32 40.21 4.40
1584 1670 4.704833 GTGGAGCTGGCGCAGGAA 62.705 66.667 10.83 0.00 39.10 3.36
1604 1690 2.275812 GTTCGACGAAATGCCGCG 60.276 61.111 12.67 0.00 0.00 6.46
1701 1787 3.057033 AGCTGTTTGATCAAATGCCTGAC 60.057 43.478 29.10 16.85 35.09 3.51
1788 1874 4.384056 CGAGGGTGCTATTTGATGAGATT 58.616 43.478 0.00 0.00 0.00 2.40
1854 1940 2.925170 AGGTGTGGCGAGCCTTCT 60.925 61.111 15.75 4.73 36.94 2.85
1935 2021 4.947147 GTTGGGGCTGTCACGGCA 62.947 66.667 11.68 0.00 37.51 5.69
2079 2165 1.341080 TGGATCTCGCCATGCTGATA 58.659 50.000 0.00 0.00 31.66 2.15
2148 2234 4.974645 TGTTGGACTTGGAACTCATAGT 57.025 40.909 0.00 0.00 0.00 2.12
2406 2494 3.409570 CATAGAGACAATGCCCATGGAG 58.590 50.000 15.22 4.39 0.00 3.86
2466 2554 1.828832 GAAGTCATAGGTGCGTCGAG 58.171 55.000 0.00 0.00 0.00 4.04
2487 2575 1.739562 GGCTGAGCTGTCGGTTGAG 60.740 63.158 3.72 0.00 0.00 3.02
2508 2596 0.036010 GCCTAGCAAGTCTTGGAGCA 60.036 55.000 14.40 0.00 39.64 4.26
2517 2605 0.455295 GTCTTGGAGCAGACGACTCG 60.455 60.000 0.00 0.00 34.12 4.18
2601 2689 3.993081 GGATTAGGAGATTGATGAGTGCG 59.007 47.826 0.00 0.00 0.00 5.34
2855 2944 1.742268 GCTGGATGGAGCTCTTGAAAC 59.258 52.381 14.64 0.00 35.95 2.78
2878 2967 3.050089 TCAGTGTCCCAGGGTTTCTTTA 58.950 45.455 5.01 0.00 0.00 1.85
3107 3197 7.768807 AAATTGCACCTGGTAGTTAATTACA 57.231 32.000 9.97 0.00 0.00 2.41
3232 3330 5.546621 AGTTGCAGACTGACTAAAAGGTA 57.453 39.130 6.65 0.00 37.17 3.08
3292 3390 4.618489 GTCCATTTTGCTTTCATCGACTTG 59.382 41.667 0.00 0.00 0.00 3.16
3335 3433 7.596749 ATTTCAACCTTCGTAGTTCACTATG 57.403 36.000 0.31 0.31 36.92 2.23
3337 3435 5.466819 TCAACCTTCGTAGTTCACTATGTG 58.533 41.667 6.17 0.00 36.92 3.21
3531 3629 6.441088 ACCTCTCTTGAGTTGGTCTTTAAT 57.559 37.500 10.41 0.00 38.61 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 95 2.034878 AGCTCGCATCCTTCATACTCA 58.965 47.619 0.00 0.00 0.00 3.41
284 323 5.030147 TGGTCTGGTCTGGATAGTGTAATT 58.970 41.667 0.00 0.00 0.00 1.40
287 326 3.632333 CTGGTCTGGTCTGGATAGTGTA 58.368 50.000 0.00 0.00 0.00 2.90
288 327 2.461695 CTGGTCTGGTCTGGATAGTGT 58.538 52.381 0.00 0.00 0.00 3.55
289 328 1.137872 GCTGGTCTGGTCTGGATAGTG 59.862 57.143 0.00 0.00 0.00 2.74
293 332 0.835941 GATGCTGGTCTGGTCTGGAT 59.164 55.000 0.00 0.00 0.00 3.41
294 333 0.545071 TGATGCTGGTCTGGTCTGGA 60.545 55.000 0.00 0.00 0.00 3.86
295 334 0.392193 GTGATGCTGGTCTGGTCTGG 60.392 60.000 0.00 0.00 0.00 3.86
296 335 0.392193 GGTGATGCTGGTCTGGTCTG 60.392 60.000 0.00 0.00 0.00 3.51
297 336 0.837691 TGGTGATGCTGGTCTGGTCT 60.838 55.000 0.00 0.00 0.00 3.85
298 337 0.036732 TTGGTGATGCTGGTCTGGTC 59.963 55.000 0.00 0.00 0.00 4.02
299 338 0.037303 CTTGGTGATGCTGGTCTGGT 59.963 55.000 0.00 0.00 0.00 4.00
330 376 2.038814 TTGCCTCCAGCTGACGAACA 62.039 55.000 17.39 3.70 44.23 3.18
412 462 7.549839 ACCAACATTGAATGAATGAATCGATT 58.450 30.769 11.20 11.20 43.87 3.34
415 465 6.558009 AGACCAACATTGAATGAATGAATCG 58.442 36.000 12.80 1.26 43.87 3.34
426 479 7.994425 ACATAATGTGTAGACCAACATTGAA 57.006 32.000 10.47 0.00 39.91 2.69
479 546 1.672854 CGTAATGGCCGTCCCTCTGA 61.673 60.000 0.00 0.00 0.00 3.27
565 633 0.693622 TAACCGGATGCCCAACAAGA 59.306 50.000 9.46 0.00 0.00 3.02
694 764 5.855740 TTTCAACTAACCCCACGAAATTT 57.144 34.783 0.00 0.00 0.00 1.82
703 773 6.339587 TCAAATCACATTTCAACTAACCCC 57.660 37.500 0.00 0.00 0.00 4.95
734 804 4.371624 TTCATTCATCAACCCTGACTGT 57.628 40.909 0.00 0.00 33.30 3.55
738 808 2.684374 CGCATTCATTCATCAACCCTGA 59.316 45.455 0.00 0.00 35.56 3.86
742 812 2.023673 TCCCGCATTCATTCATCAACC 58.976 47.619 0.00 0.00 0.00 3.77
747 817 2.734755 TTCCTCCCGCATTCATTCAT 57.265 45.000 0.00 0.00 0.00 2.57
748 818 2.505650 TTTCCTCCCGCATTCATTCA 57.494 45.000 0.00 0.00 0.00 2.57
749 819 4.391405 AAATTTCCTCCCGCATTCATTC 57.609 40.909 0.00 0.00 0.00 2.67
750 820 4.202010 CGTAAATTTCCTCCCGCATTCATT 60.202 41.667 0.00 0.00 0.00 2.57
752 822 2.680841 CGTAAATTTCCTCCCGCATTCA 59.319 45.455 0.00 0.00 0.00 2.57
753 823 2.032924 CCGTAAATTTCCTCCCGCATTC 59.967 50.000 0.00 0.00 0.00 2.67
754 824 2.021457 CCGTAAATTTCCTCCCGCATT 58.979 47.619 0.00 0.00 0.00 3.56
755 825 1.210967 TCCGTAAATTTCCTCCCGCAT 59.789 47.619 0.00 0.00 0.00 4.73
756 826 0.614294 TCCGTAAATTTCCTCCCGCA 59.386 50.000 0.00 0.00 0.00 5.69
757 827 1.871676 GATCCGTAAATTTCCTCCCGC 59.128 52.381 0.00 0.00 0.00 6.13
758 828 2.132762 CGATCCGTAAATTTCCTCCCG 58.867 52.381 0.00 0.00 0.00 5.14
759 829 1.871676 GCGATCCGTAAATTTCCTCCC 59.128 52.381 0.00 0.00 0.00 4.30
760 830 2.544267 CAGCGATCCGTAAATTTCCTCC 59.456 50.000 0.00 0.00 0.00 4.30
761 831 3.454375 TCAGCGATCCGTAAATTTCCTC 58.546 45.455 0.00 0.00 0.00 3.71
762 832 3.536956 TCAGCGATCCGTAAATTTCCT 57.463 42.857 0.00 0.00 0.00 3.36
763 833 3.807622 TCATCAGCGATCCGTAAATTTCC 59.192 43.478 0.00 0.00 0.00 3.13
764 834 5.234329 TCTTCATCAGCGATCCGTAAATTTC 59.766 40.000 0.00 0.00 0.00 2.17
765 835 5.116180 TCTTCATCAGCGATCCGTAAATTT 58.884 37.500 0.00 0.00 0.00 1.82
766 836 4.693283 TCTTCATCAGCGATCCGTAAATT 58.307 39.130 0.00 0.00 0.00 1.82
767 837 4.322080 TCTTCATCAGCGATCCGTAAAT 57.678 40.909 0.00 0.00 0.00 1.40
768 838 3.793797 TCTTCATCAGCGATCCGTAAA 57.206 42.857 0.00 0.00 0.00 2.01
769 839 4.321008 GGTATCTTCATCAGCGATCCGTAA 60.321 45.833 0.00 0.00 0.00 3.18
770 840 3.190744 GGTATCTTCATCAGCGATCCGTA 59.809 47.826 0.00 0.00 0.00 4.02
771 841 2.029828 GGTATCTTCATCAGCGATCCGT 60.030 50.000 0.00 0.00 0.00 4.69
772 842 2.029918 TGGTATCTTCATCAGCGATCCG 60.030 50.000 0.00 0.00 0.00 4.18
773 843 3.667497 TGGTATCTTCATCAGCGATCC 57.333 47.619 0.00 0.00 0.00 3.36
774 844 7.010923 GGAATTATGGTATCTTCATCAGCGATC 59.989 40.741 0.00 0.00 0.00 3.69
775 845 6.820656 GGAATTATGGTATCTTCATCAGCGAT 59.179 38.462 0.00 0.00 0.00 4.58
776 846 6.014242 AGGAATTATGGTATCTTCATCAGCGA 60.014 38.462 0.00 0.00 0.00 4.93
777 847 6.091849 CAGGAATTATGGTATCTTCATCAGCG 59.908 42.308 0.00 0.00 0.00 5.18
778 848 6.373774 CCAGGAATTATGGTATCTTCATCAGC 59.626 42.308 1.67 0.00 32.85 4.26
779 849 7.683578 TCCAGGAATTATGGTATCTTCATCAG 58.316 38.462 8.61 0.00 39.01 2.90
780 850 7.631510 TCCAGGAATTATGGTATCTTCATCA 57.368 36.000 8.61 0.00 39.01 3.07
781 851 9.525826 AAATCCAGGAATTATGGTATCTTCATC 57.474 33.333 8.61 0.00 39.01 2.92
782 852 9.887862 AAAATCCAGGAATTATGGTATCTTCAT 57.112 29.630 8.61 0.00 39.01 2.57
783 853 9.713684 AAAAATCCAGGAATTATGGTATCTTCA 57.286 29.630 8.61 0.00 39.01 3.02
807 877 2.490115 ACATCGCCGGAAGCATTAAAAA 59.510 40.909 5.05 0.00 44.04 1.94
808 878 2.088423 ACATCGCCGGAAGCATTAAAA 58.912 42.857 5.05 0.00 44.04 1.52
809 879 1.745232 ACATCGCCGGAAGCATTAAA 58.255 45.000 5.05 0.00 44.04 1.52
810 880 1.400142 CAACATCGCCGGAAGCATTAA 59.600 47.619 5.05 0.00 44.04 1.40
811 881 1.013596 CAACATCGCCGGAAGCATTA 58.986 50.000 5.05 0.00 44.04 1.90
812 882 0.960364 ACAACATCGCCGGAAGCATT 60.960 50.000 5.05 0.00 44.04 3.56
813 883 0.960364 AACAACATCGCCGGAAGCAT 60.960 50.000 5.05 0.00 44.04 3.79
814 884 1.573829 GAACAACATCGCCGGAAGCA 61.574 55.000 5.05 0.00 44.04 3.91
815 885 1.134694 GAACAACATCGCCGGAAGC 59.865 57.895 5.05 0.00 38.52 3.86
816 886 0.871722 TTGAACAACATCGCCGGAAG 59.128 50.000 5.05 0.00 0.00 3.46
817 887 1.198867 CATTGAACAACATCGCCGGAA 59.801 47.619 5.05 0.00 0.00 4.30
818 888 0.801872 CATTGAACAACATCGCCGGA 59.198 50.000 5.05 0.00 0.00 5.14
819 889 0.801872 TCATTGAACAACATCGCCGG 59.198 50.000 0.00 0.00 0.00 6.13
820 890 2.610219 TTCATTGAACAACATCGCCG 57.390 45.000 0.00 0.00 0.00 6.46
821 891 3.057596 TCCTTTCATTGAACAACATCGCC 60.058 43.478 0.00 0.00 0.00 5.54
822 892 4.159377 TCCTTTCATTGAACAACATCGC 57.841 40.909 0.00 0.00 0.00 4.58
823 893 4.726416 CCTCCTTTCATTGAACAACATCG 58.274 43.478 0.00 0.00 0.00 3.84
824 894 4.022068 TGCCTCCTTTCATTGAACAACATC 60.022 41.667 0.00 0.00 0.00 3.06
825 895 3.896888 TGCCTCCTTTCATTGAACAACAT 59.103 39.130 0.00 0.00 0.00 2.71
826 896 3.295093 TGCCTCCTTTCATTGAACAACA 58.705 40.909 0.00 0.00 0.00 3.33
827 897 4.525912 ATGCCTCCTTTCATTGAACAAC 57.474 40.909 0.00 0.00 0.00 3.32
828 898 5.511202 GGAAATGCCTCCTTTCATTGAACAA 60.511 40.000 0.00 0.00 34.90 2.83
829 899 4.021192 GGAAATGCCTCCTTTCATTGAACA 60.021 41.667 0.00 0.00 34.90 3.18
830 900 4.021192 TGGAAATGCCTCCTTTCATTGAAC 60.021 41.667 0.00 0.00 36.35 3.18
831 901 4.158786 TGGAAATGCCTCCTTTCATTGAA 58.841 39.130 0.00 0.00 36.35 2.69
832 902 3.777087 TGGAAATGCCTCCTTTCATTGA 58.223 40.909 0.00 0.00 36.35 2.57
833 903 4.690122 GATGGAAATGCCTCCTTTCATTG 58.310 43.478 0.00 0.00 36.35 2.82
834 904 3.382546 CGATGGAAATGCCTCCTTTCATT 59.617 43.478 0.00 0.00 36.35 2.57
835 905 2.954318 CGATGGAAATGCCTCCTTTCAT 59.046 45.455 0.00 0.00 36.35 2.57
836 906 2.368439 CGATGGAAATGCCTCCTTTCA 58.632 47.619 0.00 0.00 36.35 2.69
837 907 1.678101 CCGATGGAAATGCCTCCTTTC 59.322 52.381 0.00 0.00 36.35 2.62
838 908 1.284785 TCCGATGGAAATGCCTCCTTT 59.715 47.619 0.00 0.00 36.35 3.11
839 909 0.918983 TCCGATGGAAATGCCTCCTT 59.081 50.000 0.00 0.00 36.35 3.36
840 910 0.181350 GTCCGATGGAAATGCCTCCT 59.819 55.000 0.00 0.00 36.35 3.69
841 911 0.181350 AGTCCGATGGAAATGCCTCC 59.819 55.000 0.00 0.00 37.63 4.30
842 912 1.303309 CAGTCCGATGGAAATGCCTC 58.697 55.000 0.00 0.00 37.63 4.70
843 913 0.749454 GCAGTCCGATGGAAATGCCT 60.749 55.000 11.38 0.00 39.38 4.75
844 914 1.729881 GCAGTCCGATGGAAATGCC 59.270 57.895 11.38 0.00 39.38 4.40
845 915 1.089481 TCGCAGTCCGATGGAAATGC 61.089 55.000 12.11 12.11 41.89 3.56
846 916 3.064079 TCGCAGTCCGATGGAAATG 57.936 52.632 0.00 0.00 41.89 2.32
854 924 4.103103 CTCGCAGTCGCAGTCCGA 62.103 66.667 0.00 0.00 45.15 4.55
856 926 4.803426 CCCTCGCAGTCGCAGTCC 62.803 72.222 0.00 0.00 38.40 3.85
859 929 4.749310 AAGCCCTCGCAGTCGCAG 62.749 66.667 0.00 0.00 38.40 5.18
862 932 2.842394 ATCACAAGCCCTCGCAGTCG 62.842 60.000 0.00 0.00 37.52 4.18
863 933 0.175760 TATCACAAGCCCTCGCAGTC 59.824 55.000 0.00 0.00 37.52 3.51
864 934 0.108138 GTATCACAAGCCCTCGCAGT 60.108 55.000 0.00 0.00 37.52 4.40
865 935 0.176680 AGTATCACAAGCCCTCGCAG 59.823 55.000 0.00 0.00 37.52 5.18
866 936 1.409064 CTAGTATCACAAGCCCTCGCA 59.591 52.381 0.00 0.00 37.52 5.10
867 937 1.269831 CCTAGTATCACAAGCCCTCGC 60.270 57.143 0.00 0.00 0.00 5.03
868 938 2.034812 GTCCTAGTATCACAAGCCCTCG 59.965 54.545 0.00 0.00 0.00 4.63
869 939 2.034812 CGTCCTAGTATCACAAGCCCTC 59.965 54.545 0.00 0.00 0.00 4.30
870 940 2.032620 CGTCCTAGTATCACAAGCCCT 58.967 52.381 0.00 0.00 0.00 5.19
871 941 1.755380 ACGTCCTAGTATCACAAGCCC 59.245 52.381 0.00 0.00 0.00 5.19
872 942 2.426024 TCACGTCCTAGTATCACAAGCC 59.574 50.000 0.00 0.00 0.00 4.35
873 943 3.128938 ACTCACGTCCTAGTATCACAAGC 59.871 47.826 0.00 0.00 0.00 4.01
874 944 4.156190 ACACTCACGTCCTAGTATCACAAG 59.844 45.833 0.00 0.00 0.00 3.16
875 945 4.077108 ACACTCACGTCCTAGTATCACAA 58.923 43.478 0.00 0.00 0.00 3.33
876 946 3.439129 CACACTCACGTCCTAGTATCACA 59.561 47.826 0.00 0.00 0.00 3.58
877 947 3.439476 ACACACTCACGTCCTAGTATCAC 59.561 47.826 0.00 0.00 0.00 3.06
878 948 3.682696 ACACACTCACGTCCTAGTATCA 58.317 45.455 0.00 0.00 0.00 2.15
879 949 4.155462 TCAACACACTCACGTCCTAGTATC 59.845 45.833 0.00 0.00 0.00 2.24
880 950 4.077108 TCAACACACTCACGTCCTAGTAT 58.923 43.478 0.00 0.00 0.00 2.12
881 951 3.479489 TCAACACACTCACGTCCTAGTA 58.521 45.455 0.00 0.00 0.00 1.82
882 952 2.304092 TCAACACACTCACGTCCTAGT 58.696 47.619 0.00 0.00 0.00 2.57
883 953 3.364889 TTCAACACACTCACGTCCTAG 57.635 47.619 0.00 0.00 0.00 3.02
884 954 3.804786 TTTCAACACACTCACGTCCTA 57.195 42.857 0.00 0.00 0.00 2.94
885 955 2.684001 TTTCAACACACTCACGTCCT 57.316 45.000 0.00 0.00 0.00 3.85
886 956 2.031683 CCTTTTCAACACACTCACGTCC 59.968 50.000 0.00 0.00 0.00 4.79
887 957 2.933906 TCCTTTTCAACACACTCACGTC 59.066 45.455 0.00 0.00 0.00 4.34
888 958 2.936498 CTCCTTTTCAACACACTCACGT 59.064 45.455 0.00 0.00 0.00 4.49
889 959 3.001330 GTCTCCTTTTCAACACACTCACG 59.999 47.826 0.00 0.00 0.00 4.35
890 960 3.938963 TGTCTCCTTTTCAACACACTCAC 59.061 43.478 0.00 0.00 0.00 3.51
891 961 4.214986 TGTCTCCTTTTCAACACACTCA 57.785 40.909 0.00 0.00 0.00 3.41
892 962 5.560966 TTTGTCTCCTTTTCAACACACTC 57.439 39.130 0.00 0.00 0.00 3.51
893 963 5.975693 TTTTGTCTCCTTTTCAACACACT 57.024 34.783 0.00 0.00 0.00 3.55
937 1007 1.345089 TCGAGTCGGAAACCAATCCAA 59.655 47.619 13.54 0.00 39.61 3.53
1511 1597 1.300620 CACGAAACGAGGTCCAGCA 60.301 57.895 0.00 0.00 0.00 4.41
1514 1600 0.249573 GTTCCACGAAACGAGGTCCA 60.250 55.000 7.38 0.00 38.64 4.02
1604 1690 1.139095 CAGGAGAACGCGTCCCTAC 59.861 63.158 21.94 18.17 34.21 3.18
1701 1787 1.077930 CCAGCACACCAGATCCCTG 60.078 63.158 0.00 0.00 40.09 4.45
1788 1874 2.954989 CGAGATCACATTCCTCTCAGGA 59.045 50.000 0.00 0.00 44.10 3.86
1874 1960 1.377725 CCGCACCTCAGCATCCTTT 60.378 57.895 0.00 0.00 0.00 3.11
2074 2160 5.163591 TGTCAGGCATGCTTTCAAATATCAG 60.164 40.000 18.92 0.00 0.00 2.90
2079 2165 3.575256 TCTTGTCAGGCATGCTTTCAAAT 59.425 39.130 18.92 0.00 0.00 2.32
2148 2234 0.250252 TGACAGCATCAAGTCCGCAA 60.250 50.000 0.00 0.00 33.02 4.85
2313 2401 5.743636 ATGCACCATAATGTTCAACCTTT 57.256 34.783 0.00 0.00 0.00 3.11
2406 2494 0.890683 CCCACAATTCTGGAGTTGGC 59.109 55.000 0.57 0.00 33.05 4.52
2421 2509 0.747283 CAGCAAGCAGAGATCCCCAC 60.747 60.000 0.00 0.00 0.00 4.61
2487 2575 1.079127 TCCAAGACTTGCTAGGCGC 60.079 57.895 9.85 0.00 33.24 6.53
2517 2605 3.769844 TGGACAGAAGAACATAGACTCCC 59.230 47.826 0.00 0.00 0.00 4.30
2601 2689 3.941704 ATGTCCTTCTTCATCCCTTCC 57.058 47.619 0.00 0.00 0.00 3.46
2832 2920 1.562942 TCAAGAGCTCCATCCAGCATT 59.437 47.619 10.93 0.00 42.40 3.56
2855 2944 0.036875 GAAACCCTGGGACACTGAGG 59.963 60.000 22.23 0.00 0.00 3.86
2878 2967 2.786777 TGTCATGACAAGCAGCTTCAT 58.213 42.857 26.02 4.03 38.56 2.57
3107 3197 1.903183 GGAGGTAGCTCTTCCAACAGT 59.097 52.381 20.67 0.00 41.31 3.55
3232 3330 3.070018 CTCAAGATCTCTGCGTTTTGGT 58.930 45.455 0.00 0.00 0.00 3.67
3292 3390 4.632538 AATTAATTACCTCCGTGCAAGC 57.367 40.909 0.00 0.00 0.00 4.01
3386 3484 2.174639 TCAAACTGGCTGAAAGAAGGGA 59.825 45.455 0.00 0.00 34.07 4.20
3531 3629 9.003658 GTTTCACTTTTCTTCATTCTGAGGATA 57.996 33.333 0.00 0.00 32.38 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.