Multiple sequence alignment - TraesCS3B01G454900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G454900 chr3B 100.000 2333 0 0 1 2333 696671976 696674308 0.000000e+00 4309.0
1 TraesCS3B01G454900 chr3A 83.437 1292 118 49 7 1231 661585676 661586938 0.000000e+00 1112.0
2 TraesCS3B01G454900 chr3A 79.708 616 109 11 1713 2324 22191385 22191988 4.610000e-117 431.0
3 TraesCS3B01G454900 chr3A 100.000 29 0 0 503 531 621626146 621626118 1.000000e-03 54.7
4 TraesCS3B01G454900 chr3D 93.020 745 32 7 658 1382 526995147 526995891 0.000000e+00 1070.0
5 TraesCS3B01G454900 chr3D 90.765 758 64 5 1581 2333 526996188 526996944 0.000000e+00 1007.0
6 TraesCS3B01G454900 chr3D 88.926 298 32 1 189 486 526994658 526994954 1.320000e-97 366.0
7 TraesCS3B01G454900 chr3D 98.291 117 2 0 1455 1571 526996012 526996128 3.040000e-49 206.0
8 TraesCS3B01G454900 chr3D 89.441 161 12 2 10 165 526993042 526993202 5.090000e-47 198.0
9 TraesCS3B01G454900 chr3D 98.039 51 1 0 582 632 526995097 526995147 3.190000e-14 89.8
10 TraesCS3B01G454900 chr5D 83.163 588 93 6 1738 2324 332073443 332072861 1.230000e-147 532.0
11 TraesCS3B01G454900 chr5D 80.500 600 99 13 1739 2333 35650908 35651494 5.920000e-121 444.0
12 TraesCS3B01G454900 chr5D 80.068 592 106 11 1738 2324 521086976 521086392 1.660000e-116 429.0
13 TraesCS3B01G454900 chr1B 80.634 599 112 4 1738 2333 600968585 600969182 5.870000e-126 460.0
14 TraesCS3B01G454900 chr1B 85.174 344 25 8 189 521 570459013 570458685 1.730000e-86 329.0
15 TraesCS3B01G454900 chr7A 80.450 578 100 10 1743 2316 260876352 260876920 1.660000e-116 429.0
16 TraesCS3B01G454900 chr7A 79.688 576 102 13 1755 2324 608261177 608261743 3.610000e-108 401.0
17 TraesCS3B01G454900 chr2D 79.530 596 111 10 1734 2324 30677313 30677902 4.640000e-112 414.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G454900 chr3B 696671976 696674308 2332 False 4309.000000 4309 100.000000 1 2333 1 chr3B.!!$F1 2332
1 TraesCS3B01G454900 chr3A 661585676 661586938 1262 False 1112.000000 1112 83.437000 7 1231 1 chr3A.!!$F2 1224
2 TraesCS3B01G454900 chr3A 22191385 22191988 603 False 431.000000 431 79.708000 1713 2324 1 chr3A.!!$F1 611
3 TraesCS3B01G454900 chr3D 526993042 526996944 3902 False 489.466667 1070 93.080333 10 2333 6 chr3D.!!$F1 2323
4 TraesCS3B01G454900 chr5D 332072861 332073443 582 True 532.000000 532 83.163000 1738 2324 1 chr5D.!!$R1 586
5 TraesCS3B01G454900 chr5D 35650908 35651494 586 False 444.000000 444 80.500000 1739 2333 1 chr5D.!!$F1 594
6 TraesCS3B01G454900 chr5D 521086392 521086976 584 True 429.000000 429 80.068000 1738 2324 1 chr5D.!!$R2 586
7 TraesCS3B01G454900 chr1B 600968585 600969182 597 False 460.000000 460 80.634000 1738 2333 1 chr1B.!!$F1 595
8 TraesCS3B01G454900 chr7A 260876352 260876920 568 False 429.000000 429 80.450000 1743 2316 1 chr7A.!!$F1 573
9 TraesCS3B01G454900 chr7A 608261177 608261743 566 False 401.000000 401 79.688000 1755 2324 1 chr7A.!!$F2 569
10 TraesCS3B01G454900 chr2D 30677313 30677902 589 False 414.000000 414 79.530000 1734 2324 1 chr2D.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 1748 0.108945 GCTTTACTAGTCGGCCGTGT 60.109 55.0 27.15 20.55 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1450 3040 0.109873 CGAGAACCGCGAACTACAGT 60.11 55.0 8.23 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.134946 GCCCATGGTTGAACACATAGC 59.865 52.381 11.73 0.00 0.00 2.97
85 90 2.275380 GCATTTGGGACCACGGCTT 61.275 57.895 0.00 0.00 0.00 4.35
148 154 8.711457 CAACTTTCAAGTTTGAACAAAAGATGT 58.289 29.630 6.79 2.19 46.52 3.06
153 159 7.195646 TCAAGTTTGAACAAAAGATGTAGCTG 58.804 34.615 0.00 0.00 42.99 4.24
165 171 2.495155 TGTAGCTGTAGGTACCACGA 57.505 50.000 15.94 0.00 45.53 4.35
166 172 2.086869 TGTAGCTGTAGGTACCACGAC 58.913 52.381 15.94 9.57 45.53 4.34
168 174 0.886563 AGCTGTAGGTACCACGACAC 59.113 55.000 15.94 9.58 0.00 3.67
171 177 2.686915 GCTGTAGGTACCACGACACTAT 59.313 50.000 15.94 0.00 0.00 2.12
172 178 3.879295 GCTGTAGGTACCACGACACTATA 59.121 47.826 15.94 0.00 0.00 1.31
174 180 5.102953 TGTAGGTACCACGACACTATACT 57.897 43.478 15.94 0.00 0.00 2.12
175 181 5.118990 TGTAGGTACCACGACACTATACTC 58.881 45.833 15.94 0.00 0.00 2.59
176 182 3.549794 AGGTACCACGACACTATACTCC 58.450 50.000 15.94 0.00 0.00 3.85
177 183 3.054139 AGGTACCACGACACTATACTCCA 60.054 47.826 15.94 0.00 0.00 3.86
179 185 4.201990 GGTACCACGACACTATACTCCAAG 60.202 50.000 7.15 0.00 0.00 3.61
180 186 3.693807 ACCACGACACTATACTCCAAGA 58.306 45.455 0.00 0.00 0.00 3.02
181 187 4.279145 ACCACGACACTATACTCCAAGAT 58.721 43.478 0.00 0.00 0.00 2.40
182 188 4.098044 ACCACGACACTATACTCCAAGATG 59.902 45.833 0.00 0.00 0.00 2.90
183 189 4.338400 CCACGACACTATACTCCAAGATGA 59.662 45.833 0.00 0.00 0.00 2.92
184 190 5.163550 CCACGACACTATACTCCAAGATGAA 60.164 44.000 0.00 0.00 0.00 2.57
185 191 5.744345 CACGACACTATACTCCAAGATGAAC 59.256 44.000 0.00 0.00 0.00 3.18
186 192 5.652891 ACGACACTATACTCCAAGATGAACT 59.347 40.000 0.00 0.00 0.00 3.01
187 193 6.183360 ACGACACTATACTCCAAGATGAACTC 60.183 42.308 0.00 0.00 0.00 3.01
195 1633 8.954950 ATACTCCAAGATGAACTCAATAGTTG 57.045 34.615 0.00 0.00 46.09 3.16
205 1643 5.534278 TGAACTCAATAGTTGCACAAATCCA 59.466 36.000 0.00 0.00 46.09 3.41
258 1696 1.949525 CACATGGTGGGCTATACTTGC 59.050 52.381 0.00 0.00 0.00 4.01
300 1738 2.186076 CGGCTCAGTTCGCTTTACTAG 58.814 52.381 0.00 0.00 0.00 2.57
305 1743 1.918609 CAGTTCGCTTTACTAGTCGGC 59.081 52.381 0.00 1.44 0.00 5.54
310 1748 0.108945 GCTTTACTAGTCGGCCGTGT 60.109 55.000 27.15 20.55 0.00 4.49
321 1759 0.247655 CGGCCGTGTGATTCATTTCG 60.248 55.000 19.50 0.00 0.00 3.46
348 1786 2.545946 GGCGAATCAAACAGAGGATAGC 59.454 50.000 0.00 0.00 0.00 2.97
350 1788 2.797156 CGAATCAAACAGAGGATAGCGG 59.203 50.000 0.00 0.00 0.00 5.52
372 1810 3.252458 GTCGTCTTTTGTATGCCCAAAGT 59.748 43.478 3.53 0.00 35.85 2.66
391 1829 3.387397 AGTAAAAGGTGCACGTACAGAC 58.613 45.455 13.22 8.76 0.00 3.51
464 1902 1.802960 CAAGTCATGCCTGTCAGTCAC 59.197 52.381 0.00 0.00 0.00 3.67
502 1940 4.289245 CGTGGTCGGTCCGTTGGT 62.289 66.667 11.88 0.00 39.52 3.67
530 1973 9.069082 AGACCTCAATATAGATGTGTACTGTAC 57.931 37.037 10.98 10.98 0.00 2.90
569 2072 0.465705 GCCTGCAGCTGATAGGTACA 59.534 55.000 27.89 12.03 38.99 2.90
572 2075 2.482664 CCTGCAGCTGATAGGTACACTG 60.483 54.545 20.43 0.00 0.00 3.66
632 2143 5.454755 GGATTATTGTTACAGCCAGCTAGGA 60.455 44.000 6.40 0.00 41.22 2.94
645 2156 2.969157 CTAGGAGAGCATGTGCACG 58.031 57.895 13.13 0.00 45.16 5.34
646 2157 1.150567 CTAGGAGAGCATGTGCACGC 61.151 60.000 13.13 10.60 45.16 5.34
647 2158 1.887344 TAGGAGAGCATGTGCACGCA 61.887 55.000 17.36 0.00 45.16 5.24
648 2159 2.110967 GGAGAGCATGTGCACGCAT 61.111 57.895 17.36 6.80 45.16 4.73
649 2160 1.062047 GAGAGCATGTGCACGCATG 59.938 57.895 17.69 17.69 46.50 4.06
694 2205 0.877743 GCAGGAGCTCACAAGGAAAC 59.122 55.000 17.19 0.00 37.91 2.78
695 2206 1.528129 CAGGAGCTCACAAGGAAACC 58.472 55.000 17.19 0.00 0.00 3.27
715 2226 1.001240 CGCAGCATCTCTAGCTACGC 61.001 60.000 0.00 0.00 41.31 4.42
769 2288 0.817013 ATACAATGTGGCTTTGGCGG 59.183 50.000 0.00 0.00 39.81 6.13
807 2326 1.821753 CCGAGGAGGCATATTCGATCT 59.178 52.381 5.67 0.00 35.19 2.75
838 2357 1.639298 GCTACTGCGTGCCAAAGGAG 61.639 60.000 0.00 0.00 0.00 3.69
897 2421 4.853142 TCACGGGCGGCCCTATCT 62.853 66.667 33.80 12.14 42.67 1.98
951 2482 0.615331 ATCACAGCACACCTACCCAG 59.385 55.000 0.00 0.00 0.00 4.45
960 2491 2.160171 ACCTACCCAGCCAAAGCCA 61.160 57.895 0.00 0.00 41.25 4.75
1011 2552 3.860605 CCATCGATGGCCGGGACA 61.861 66.667 30.53 4.28 41.75 4.02
1236 2786 3.716006 CGGTGCGTGTGCCAGAAG 61.716 66.667 0.00 0.00 41.78 2.85
1382 2932 3.425938 GACGCGCGCATTCCTTCTG 62.426 63.158 32.58 13.71 0.00 3.02
1384 2934 2.870372 GCGCGCATTCCTTCTGTT 59.130 55.556 29.10 0.00 0.00 3.16
1386 2936 0.387239 GCGCGCATTCCTTCTGTTTT 60.387 50.000 29.10 0.00 0.00 2.43
1418 3008 1.847890 AAGCAAATAACGGCGTGCGT 61.848 50.000 15.70 7.79 41.90 5.24
1419 3009 2.143458 GCAAATAACGGCGTGCGTG 61.143 57.895 15.70 11.05 0.00 5.34
1420 3010 1.493750 CAAATAACGGCGTGCGTGA 59.506 52.632 15.70 0.00 0.00 4.35
1421 3011 0.518355 CAAATAACGGCGTGCGTGAG 60.518 55.000 15.70 0.00 0.00 3.51
1422 3012 0.947180 AAATAACGGCGTGCGTGAGT 60.947 50.000 15.70 0.00 0.00 3.41
1423 3013 1.623081 AATAACGGCGTGCGTGAGTG 61.623 55.000 15.70 0.00 0.00 3.51
1428 3018 4.489795 GCGTGCGTGAGTGCGATG 62.490 66.667 0.00 0.00 37.81 3.84
1452 3042 2.413351 CGATCGATCGGCCACACT 59.587 61.111 34.54 0.00 45.93 3.55
1453 3043 1.946156 CGATCGATCGGCCACACTG 60.946 63.158 34.54 8.20 45.93 3.66
1487 3093 6.536941 GGTTCTCGATTTAGATTGAGCTTTCT 59.463 38.462 5.74 0.00 41.68 2.52
1511 3117 1.342555 GTACGTTCGTGCATGTGCTA 58.657 50.000 5.68 0.00 42.66 3.49
1627 3283 8.443160 CGCATTCGGTACTCATCAATTATTATT 58.557 33.333 0.00 0.00 0.00 1.40
1802 3458 2.786495 CGGGTCCACCTCATCTCCG 61.786 68.421 0.00 0.00 36.97 4.63
1876 3536 2.807967 GGCTTTGTTTTGGGATGCTTTC 59.192 45.455 0.00 0.00 0.00 2.62
1951 3619 6.118852 GCTCTCTGAAGATGGAATAAGGTTT 58.881 40.000 0.00 0.00 0.00 3.27
2019 3690 2.143122 GCGTGTGGAGATTTGTCTTCA 58.857 47.619 0.00 0.00 0.00 3.02
2026 3697 3.450817 TGGAGATTTGTCTTCAGCGGATA 59.549 43.478 0.00 0.00 0.00 2.59
2035 3706 2.100749 TCTTCAGCGGATATTGCGAGAA 59.899 45.455 0.00 9.60 37.44 2.87
2051 3722 0.601841 AGAATCGGTCGGCGTTTGTT 60.602 50.000 6.85 0.00 0.00 2.83
2053 3724 0.236449 AATCGGTCGGCGTTTGTTTC 59.764 50.000 6.85 0.00 0.00 2.78
2092 3763 1.127951 CCGGTCTTTATTCGTGTGTGC 59.872 52.381 0.00 0.00 0.00 4.57
2109 3780 2.877786 TGTGCTCATGTGTTTACAGGTG 59.122 45.455 0.00 0.00 40.79 4.00
2179 3850 2.651361 CGCTGGTCCTATAGGGCG 59.349 66.667 20.77 20.77 41.79 6.13
2252 3923 4.458829 AGGGAGGGGCGATGACGA 62.459 66.667 0.00 0.00 42.66 4.20
2273 3944 0.818938 TATGCACCTTCGGCTCGTTA 59.181 50.000 0.00 0.00 0.00 3.18
2317 3988 2.031870 TGGTCTACGGATCTGGATGTG 58.968 52.381 6.47 0.00 0.00 3.21
2319 3990 2.693591 GGTCTACGGATCTGGATGTGAA 59.306 50.000 6.47 0.00 0.00 3.18
2325 3997 6.984474 TCTACGGATCTGGATGTGAATTTTAC 59.016 38.462 6.47 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.276138 TGCTCCAGTGTCCATGTACTG 59.724 52.381 12.52 12.52 42.97 2.74
85 90 0.398381 AAACAAGGGCAAGAGGGCAA 60.398 50.000 0.00 0.00 45.66 4.52
97 102 4.391405 AAGTGGAAAGAGCAAAACAAGG 57.609 40.909 0.00 0.00 0.00 3.61
148 154 2.086869 GTGTCGTGGTACCTACAGCTA 58.913 52.381 14.36 0.00 0.00 3.32
153 159 4.513318 GGAGTATAGTGTCGTGGTACCTAC 59.487 50.000 14.36 9.35 0.00 3.18
165 171 7.482169 TTGAGTTCATCTTGGAGTATAGTGT 57.518 36.000 0.00 0.00 0.00 3.55
166 172 9.689976 CTATTGAGTTCATCTTGGAGTATAGTG 57.310 37.037 0.00 0.00 0.00 2.74
171 177 6.818644 GCAACTATTGAGTTCATCTTGGAGTA 59.181 38.462 0.00 0.00 44.39 2.59
172 178 5.645497 GCAACTATTGAGTTCATCTTGGAGT 59.355 40.000 0.00 0.00 44.39 3.85
174 180 5.412594 GTGCAACTATTGAGTTCATCTTGGA 59.587 40.000 0.00 0.00 44.39 3.53
175 181 5.181811 TGTGCAACTATTGAGTTCATCTTGG 59.818 40.000 0.00 0.00 44.39 3.61
176 182 6.245115 TGTGCAACTATTGAGTTCATCTTG 57.755 37.500 0.00 0.00 44.39 3.02
177 183 6.882610 TTGTGCAACTATTGAGTTCATCTT 57.117 33.333 0.00 0.00 44.39 2.40
179 185 6.749118 GGATTTGTGCAACTATTGAGTTCATC 59.251 38.462 0.00 0.00 44.39 2.92
180 186 6.209192 TGGATTTGTGCAACTATTGAGTTCAT 59.791 34.615 0.00 0.00 44.39 2.57
181 187 5.534278 TGGATTTGTGCAACTATTGAGTTCA 59.466 36.000 0.00 0.00 44.39 3.18
182 188 6.012658 TGGATTTGTGCAACTATTGAGTTC 57.987 37.500 0.00 0.00 44.39 3.01
184 190 6.183360 TGTTTGGATTTGTGCAACTATTGAGT 60.183 34.615 0.00 0.00 38.04 3.41
185 191 6.215121 TGTTTGGATTTGTGCAACTATTGAG 58.785 36.000 0.00 0.00 38.04 3.02
186 192 6.154203 TGTTTGGATTTGTGCAACTATTGA 57.846 33.333 0.00 0.00 38.04 2.57
187 193 5.984926 ACTGTTTGGATTTGTGCAACTATTG 59.015 36.000 0.00 0.00 38.04 1.90
195 1633 3.364964 CCTCGTACTGTTTGGATTTGTGC 60.365 47.826 0.00 0.00 0.00 4.57
205 1643 2.812011 GTCAAATGCCCTCGTACTGTTT 59.188 45.455 0.00 0.00 0.00 2.83
297 1735 0.172578 TGAATCACACGGCCGACTAG 59.827 55.000 35.90 20.23 0.00 2.57
300 1738 0.802494 AAATGAATCACACGGCCGAC 59.198 50.000 35.90 13.45 0.00 4.79
305 1743 3.062099 CACTACCGAAATGAATCACACGG 59.938 47.826 17.88 17.88 44.77 4.94
310 1748 2.093921 TCGCCACTACCGAAATGAATCA 60.094 45.455 0.00 0.00 0.00 2.57
321 1759 2.673368 CTCTGTTTGATTCGCCACTACC 59.327 50.000 0.00 0.00 0.00 3.18
348 1786 0.725117 GGGCATACAAAAGACGACCG 59.275 55.000 0.00 0.00 0.00 4.79
350 1788 3.252458 ACTTTGGGCATACAAAAGACGAC 59.748 43.478 1.50 0.00 39.60 4.34
372 1810 2.366266 AGGTCTGTACGTGCACCTTTTA 59.634 45.455 12.15 0.00 35.61 1.52
391 1829 3.748048 CCAGAAATCACTGTGTGTGTAGG 59.252 47.826 7.79 1.69 46.27 3.18
413 1851 3.071479 TCTCGGTTTATGCCACTTGTTC 58.929 45.455 0.00 0.00 0.00 3.18
464 1902 1.750399 CAGGGCAAGGAACATCCCG 60.750 63.158 0.00 0.00 43.46 5.14
502 1940 7.780271 ACAGTACACATCTATATTGAGGTCTGA 59.220 37.037 18.62 1.50 0.00 3.27
530 1973 1.942657 CTTGTCACTCCCAGTGTTGTG 59.057 52.381 3.64 0.00 46.03 3.33
569 2072 1.858091 CGCTGAGACACTTTCACAGT 58.142 50.000 0.00 0.00 43.06 3.55
572 2075 0.510359 CAGCGCTGAGACACTTTCAC 59.490 55.000 33.66 0.00 0.00 3.18
587 2090 2.415010 CCGAGATGGAGTCCAGCG 59.585 66.667 21.29 20.17 45.56 5.18
588 2091 1.965754 AAGCCGAGATGGAGTCCAGC 61.966 60.000 20.05 20.05 40.67 4.85
632 2143 3.184206 CATGCGTGCACATGCTCT 58.816 55.556 18.64 2.38 43.48 4.09
694 2205 0.038709 GTAGCTAGAGATGCTGCGGG 60.039 60.000 0.00 0.00 41.32 6.13
695 2206 3.488048 GTAGCTAGAGATGCTGCGG 57.512 57.895 0.00 0.00 41.32 5.69
715 2226 0.247419 GATCGAAGCACATGCACGTG 60.247 55.000 12.28 12.28 45.16 4.49
807 2326 3.307906 AGTAGCGGTCACGGGCAA 61.308 61.111 0.00 0.00 41.36 4.52
834 2353 0.247736 CGCCTAGCTTGTTGTCTCCT 59.752 55.000 0.00 0.00 0.00 3.69
838 2357 2.740714 CGCCGCCTAGCTTGTTGTC 61.741 63.158 0.00 0.00 0.00 3.18
897 2421 2.165641 CCGATGCCTTATATAGCGTGGA 59.834 50.000 1.32 0.00 0.00 4.02
925 2449 0.035317 GGTGTGCTGTGATCTGACCA 59.965 55.000 0.00 0.00 0.00 4.02
951 2482 0.817229 CTAGCTAGGCTGGCTTTGGC 60.817 60.000 30.58 11.68 40.10 4.52
960 2491 0.909610 TGGTTGGCACTAGCTAGGCT 60.910 55.000 24.35 1.58 43.41 4.58
1010 2551 1.970917 GCTCGCCATCGTCACCTTTG 61.971 60.000 0.00 0.00 36.96 2.77
1011 2552 1.741770 GCTCGCCATCGTCACCTTT 60.742 57.895 0.00 0.00 36.96 3.11
1277 2827 4.575973 AGGGGATCTGCATGGCGC 62.576 66.667 0.00 0.00 42.89 6.53
1388 2938 7.755822 ACGCCGTTATTTGCTTATAATGAAAAA 59.244 29.630 10.37 0.00 31.52 1.94
1390 2940 6.689241 CACGCCGTTATTTGCTTATAATGAAA 59.311 34.615 10.37 0.00 31.52 2.69
1392 2942 5.743467 CACGCCGTTATTTGCTTATAATGA 58.257 37.500 10.37 0.00 31.52 2.57
1393 2943 4.378616 GCACGCCGTTATTTGCTTATAATG 59.621 41.667 0.00 0.00 32.00 1.90
1394 2944 4.533222 GCACGCCGTTATTTGCTTATAAT 58.467 39.130 0.00 0.00 32.00 1.28
1396 2946 2.033577 CGCACGCCGTTATTTGCTTATA 60.034 45.455 0.00 0.00 32.56 0.98
1397 2947 1.267832 CGCACGCCGTTATTTGCTTAT 60.268 47.619 0.00 0.00 32.56 1.73
1448 3038 0.672342 AGAACCGCGAACTACAGTGT 59.328 50.000 8.23 0.00 0.00 3.55
1449 3039 1.337821 GAGAACCGCGAACTACAGTG 58.662 55.000 8.23 0.00 0.00 3.66
1450 3040 0.109873 CGAGAACCGCGAACTACAGT 60.110 55.000 8.23 0.00 0.00 3.55
1451 3041 0.167470 TCGAGAACCGCGAACTACAG 59.833 55.000 8.23 0.00 38.37 2.74
1452 3042 0.806868 ATCGAGAACCGCGAACTACA 59.193 50.000 8.23 0.00 39.28 2.74
1453 3043 1.905449 AATCGAGAACCGCGAACTAC 58.095 50.000 8.23 0.00 39.28 2.73
1487 3093 1.859703 ACATGCACGAACGTACGAAAA 59.140 42.857 24.41 0.14 37.03 2.29
1511 3117 2.363788 TTTGCACGACTAGCTCGATT 57.636 45.000 17.67 0.00 46.14 3.34
1627 3283 6.208402 TGCCAAAAGAAAATGTAGCTGATGTA 59.792 34.615 0.00 0.00 0.00 2.29
1876 3536 4.887655 ACACAAACCCTAAGAAAACTCAGG 59.112 41.667 0.00 0.00 0.00 3.86
1951 3619 3.702048 CGAGGGTCGGGCAAGGAA 61.702 66.667 0.00 0.00 36.00 3.36
1962 3631 2.989824 CACCACCGAGACGAGGGT 60.990 66.667 0.00 0.00 36.87 4.34
2019 3690 1.670087 CCGATTCTCGCAATATCCGCT 60.670 52.381 0.00 0.00 38.82 5.52
2026 3697 1.883084 GCCGACCGATTCTCGCAAT 60.883 57.895 0.00 0.00 38.82 3.56
2035 3706 1.571215 GGAAACAAACGCCGACCGAT 61.571 55.000 0.00 0.00 41.02 4.18
2051 3722 2.660206 CACGTGGATCCACCGGAA 59.340 61.111 34.05 0.64 43.49 4.30
2053 3724 3.387091 TCCACGTGGATCCACCGG 61.387 66.667 34.05 31.88 43.49 5.28
2092 3763 3.417069 TCCCACCTGTAAACACATGAG 57.583 47.619 0.00 0.00 0.00 2.90
2179 3850 1.987770 TCGGAAAATCGTCGTGCTAAC 59.012 47.619 0.00 0.00 0.00 2.34
2192 3863 5.518848 TGTTGTAGTAGACAGTCGGAAAA 57.481 39.130 0.00 0.00 39.88 2.29
2273 3944 0.663568 GCGACGACTACAAGCACTGT 60.664 55.000 0.00 0.00 42.47 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.