Multiple sequence alignment - TraesCS3B01G454800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G454800 chr3B 100.000 3439 0 0 1 3439 696589471 696586033 0.000000e+00 6351
1 TraesCS3B01G454800 chr3A 88.673 2781 122 78 2 2695 661495608 661492934 0.000000e+00 3212
2 TraesCS3B01G454800 chr3A 93.603 297 18 1 2918 3213 661492936 661492640 3.150000e-120 442
3 TraesCS3B01G454800 chr3D 86.658 1589 104 53 1171 2716 526988867 526987344 0.000000e+00 1661
4 TraesCS3B01G454800 chr3D 87.276 1116 47 39 2 1070 526990113 526989046 0.000000e+00 1186
5 TraesCS3B01G454800 chr3D 84.967 153 10 6 2703 2853 526987330 526987189 3.580000e-30 143
6 TraesCS3B01G454800 chr3D 94.186 86 5 0 1065 1150 526989019 526988934 7.740000e-27 132
7 TraesCS3B01G454800 chr7D 96.491 114 3 1 3325 3438 212822039 212821927 1.630000e-43 187
8 TraesCS3B01G454800 chrUn 95.652 115 5 0 3324 3438 60529086 60529200 5.860000e-43 185
9 TraesCS3B01G454800 chr5A 93.913 115 6 1 3324 3438 552845760 552845647 4.560000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G454800 chr3B 696586033 696589471 3438 True 6351.0 6351 100.00000 1 3439 1 chr3B.!!$R1 3438
1 TraesCS3B01G454800 chr3A 661492640 661495608 2968 True 1827.0 3212 91.13800 2 3213 2 chr3A.!!$R1 3211
2 TraesCS3B01G454800 chr3D 526987189 526990113 2924 True 780.5 1661 88.27175 2 2853 4 chr3D.!!$R1 2851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 909 0.475906 CCCCACATTCCATCTCCCTC 59.524 60.0 0.00 0.0 0.00 4.30 F
1093 1199 0.749091 TGTGCACTGCTGCTTCAGTT 60.749 50.0 19.41 0.0 44.26 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 1914 0.040425 GGACGACGCACTGCATTTTT 60.040 50.0 1.11 0.0 0.0 1.94 R
3085 3352 0.033504 TTTGAGCTGTGGGAGTCGAC 59.966 55.0 7.70 7.7 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 5.789521 CCAATTTTTACGACCATTTTCCCT 58.210 37.500 0.00 0.00 0.00 4.20
68 69 7.095397 CCAATTTTTACGACCATTTTCCCTTTC 60.095 37.037 0.00 0.00 0.00 2.62
69 70 6.466885 TTTTTACGACCATTTTCCCTTTCA 57.533 33.333 0.00 0.00 0.00 2.69
129 130 2.834549 TCCTTTCAAAACCCACAAGCAA 59.165 40.909 0.00 0.00 0.00 3.91
130 131 3.261897 TCCTTTCAAAACCCACAAGCAAA 59.738 39.130 0.00 0.00 0.00 3.68
131 132 3.622612 CCTTTCAAAACCCACAAGCAAAG 59.377 43.478 0.00 0.00 0.00 2.77
132 133 2.307934 TCAAAACCCACAAGCAAAGC 57.692 45.000 0.00 0.00 0.00 3.51
172 173 7.382488 CCACACGGTAGATGATAAATTAGTGAG 59.618 40.741 0.00 0.00 0.00 3.51
176 180 5.869888 GGTAGATGATAAATTAGTGAGGCCG 59.130 44.000 0.00 0.00 0.00 6.13
212 216 2.442188 CGTTAACCGCGAGCCAGAC 61.442 63.158 8.23 0.00 0.00 3.51
213 217 2.126228 TTAACCGCGAGCCAGACG 60.126 61.111 8.23 0.00 0.00 4.18
322 338 1.005037 CCAAAGGGAAAAAGCGGCC 60.005 57.895 0.00 0.00 35.59 6.13
323 339 1.372872 CAAAGGGAAAAAGCGGCCG 60.373 57.895 24.05 24.05 0.00 6.13
324 340 3.220999 AAAGGGAAAAAGCGGCCGC 62.221 57.895 42.34 42.34 42.33 6.53
477 493 1.007387 CCAAAAGCGCTCGCCTTTT 60.007 52.632 12.06 3.87 43.17 2.27
504 533 1.973812 GCCCCCAGCAAACAGAGAC 60.974 63.158 0.00 0.00 42.97 3.36
530 565 4.770010 AGACAGTGAAAGAGAGAGGGTAAG 59.230 45.833 0.00 0.00 0.00 2.34
568 603 2.428530 CTCATCTCATGACTTGGACCGA 59.571 50.000 0.00 0.00 35.06 4.69
616 651 1.066136 CGGCATCATATGAGTGCGAG 58.934 55.000 22.57 18.00 39.69 5.03
676 711 1.742140 TGTGTGTCGTGCGTGGTTT 60.742 52.632 0.00 0.00 0.00 3.27
840 907 1.538666 CCCCCACATTCCATCTCCC 59.461 63.158 0.00 0.00 0.00 4.30
841 908 0.995675 CCCCCACATTCCATCTCCCT 60.996 60.000 0.00 0.00 0.00 4.20
842 909 0.475906 CCCCACATTCCATCTCCCTC 59.524 60.000 0.00 0.00 0.00 4.30
843 910 1.516110 CCCACATTCCATCTCCCTCT 58.484 55.000 0.00 0.00 0.00 3.69
995 1069 3.533606 TCCTCAGCTTGTCATTAGCTC 57.466 47.619 0.00 0.00 45.52 4.09
1063 1137 6.064735 AGATGCTCTTCTTTCATTCTCCTT 57.935 37.500 0.00 0.00 0.00 3.36
1093 1199 0.749091 TGTGCACTGCTGCTTCAGTT 60.749 50.000 19.41 0.00 44.26 3.16
1097 1203 1.336125 GCACTGCTGCTTCAGTTCTTT 59.664 47.619 8.38 0.00 44.26 2.52
1216 1380 3.270877 CTCGTAGCAGTAGGCCATTTTT 58.729 45.455 5.01 0.00 46.50 1.94
1261 1425 5.147330 ACATCGGATACAACTGTTCAGAA 57.853 39.130 6.83 0.00 0.00 3.02
1312 1493 3.077359 AGATCAAAAGTACCAGCACTGC 58.923 45.455 0.00 0.00 0.00 4.40
1313 1494 2.638480 TCAAAAGTACCAGCACTGCT 57.362 45.000 0.00 0.00 40.77 4.24
1314 1495 3.762407 TCAAAAGTACCAGCACTGCTA 57.238 42.857 2.39 0.00 36.40 3.49
1315 1496 3.664107 TCAAAAGTACCAGCACTGCTAG 58.336 45.455 2.39 0.00 36.40 3.42
1316 1497 3.071023 TCAAAAGTACCAGCACTGCTAGT 59.929 43.478 2.39 5.18 36.40 2.57
1427 1613 2.223272 GCGTACAGGGATTTAAGCAAGC 60.223 50.000 0.00 0.00 0.00 4.01
1432 1618 2.424956 CAGGGATTTAAGCAAGCTGGTC 59.575 50.000 0.00 0.00 0.00 4.02
1434 1620 1.401905 GGATTTAAGCAAGCTGGTCCG 59.598 52.381 0.00 0.00 0.00 4.79
1435 1621 2.084546 GATTTAAGCAAGCTGGTCCGT 58.915 47.619 0.00 0.00 0.00 4.69
1518 1704 1.173043 GCGATTGGAACATGTGGGAA 58.827 50.000 0.00 0.00 39.30 3.97
1655 1841 2.303022 CCTACAAGAAGGTCAGGCTCAA 59.697 50.000 0.00 0.00 31.46 3.02
1672 1858 4.346129 GCTCAAACTCAGACACAACAAAG 58.654 43.478 0.00 0.00 0.00 2.77
1678 1864 2.016318 TCAGACACAACAAAGCCACAG 58.984 47.619 0.00 0.00 0.00 3.66
1681 1867 0.894141 ACACAACAAAGCCACAGCAA 59.106 45.000 0.00 0.00 43.56 3.91
1688 1874 4.178545 ACAAAGCCACAGCAACATTATC 57.821 40.909 0.00 0.00 43.56 1.75
1701 1887 4.820716 GCAACATTATCTCCAGATCAGCTT 59.179 41.667 0.00 0.00 36.05 3.74
1727 1913 0.027716 CAGCAGCTGACGATCAATGC 59.972 55.000 20.43 0.00 38.63 3.56
1728 1914 0.392060 AGCAGCTGACGATCAATGCA 60.392 50.000 20.43 0.00 39.95 3.96
1752 1938 2.865308 CAGTGCGTCGTCCGAGTA 59.135 61.111 0.00 0.00 39.56 2.59
1759 1945 1.135859 GCGTCGTCCGAGTAAAGAAGA 60.136 52.381 0.00 0.00 39.56 2.87
1785 1971 2.727684 GAACGAGAAGCCGAACGCC 61.728 63.158 0.00 0.00 38.78 5.68
1794 1980 4.676586 CCGAACGCCAACGCCAAC 62.677 66.667 0.00 0.00 45.53 3.77
1807 1993 2.435938 CCAACGCCGGTGCTATGT 60.436 61.111 16.69 0.00 34.43 2.29
1853 2042 2.971095 AAGCAGCAGCAGCAGAACCA 62.971 55.000 12.92 0.00 45.49 3.67
1875 2064 0.327591 AGCAAGGGAAGAAGGAGCAG 59.672 55.000 0.00 0.00 0.00 4.24
1876 2065 1.311651 GCAAGGGAAGAAGGAGCAGC 61.312 60.000 0.00 0.00 0.00 5.25
1877 2066 0.037303 CAAGGGAAGAAGGAGCAGCA 59.963 55.000 0.00 0.00 0.00 4.41
1881 2070 0.607489 GGAAGAAGGAGCAGCAGCAA 60.607 55.000 3.17 0.00 45.49 3.91
1962 2154 0.324943 ACAAGATCTCCCCCAACGTG 59.675 55.000 0.00 0.00 0.00 4.49
1995 2188 1.277557 CAGAAGGCAAGTGCTCCTACT 59.722 52.381 2.85 0.00 41.70 2.57
2039 2233 4.822350 TGTCACGTGATTGGTGGATTTTTA 59.178 37.500 23.12 0.00 36.09 1.52
2040 2234 5.049060 TGTCACGTGATTGGTGGATTTTTAG 60.049 40.000 23.12 0.00 36.09 1.85
2041 2235 5.048991 GTCACGTGATTGGTGGATTTTTAGT 60.049 40.000 23.12 0.00 36.09 2.24
2064 2260 5.975693 TGCCAAGTGGATTTACTTTTAGG 57.024 39.130 0.18 0.00 38.78 2.69
2100 2298 9.428097 GATGAAAAGAAATGGATTTGCTTTAGT 57.572 29.630 0.00 0.00 32.34 2.24
2140 2338 4.602995 TGTGATTGACGCAAACCTTTTAC 58.397 39.130 0.00 0.00 35.99 2.01
2141 2339 4.336993 TGTGATTGACGCAAACCTTTTACT 59.663 37.500 0.00 0.00 35.99 2.24
2142 2340 4.909880 GTGATTGACGCAAACCTTTTACTC 59.090 41.667 0.00 0.00 0.00 2.59
2143 2341 3.595709 TTGACGCAAACCTTTTACTCG 57.404 42.857 0.00 0.00 0.00 4.18
2144 2342 1.868498 TGACGCAAACCTTTTACTCGG 59.132 47.619 0.00 0.00 0.00 4.63
2147 2345 1.463444 CGCAAACCTTTTACTCGGAGG 59.537 52.381 10.23 0.00 36.62 4.30
2148 2346 1.810755 GCAAACCTTTTACTCGGAGGG 59.189 52.381 10.23 2.89 34.81 4.30
2149 2347 2.433436 CAAACCTTTTACTCGGAGGGG 58.567 52.381 10.23 5.94 34.81 4.79
2150 2348 0.989602 AACCTTTTACTCGGAGGGGG 59.010 55.000 10.23 6.26 34.81 5.40
2151 2349 0.117742 ACCTTTTACTCGGAGGGGGA 59.882 55.000 10.23 0.00 34.81 4.81
2152 2350 1.274242 ACCTTTTACTCGGAGGGGGAT 60.274 52.381 10.23 0.00 34.81 3.85
2153 2351 2.022722 ACCTTTTACTCGGAGGGGGATA 60.023 50.000 10.23 0.00 34.81 2.59
2154 2352 3.043418 CCTTTTACTCGGAGGGGGATAA 58.957 50.000 10.23 0.00 0.00 1.75
2155 2353 3.071167 CCTTTTACTCGGAGGGGGATAAG 59.929 52.174 10.23 4.28 0.00 1.73
2156 2354 3.693526 TTTACTCGGAGGGGGATAAGA 57.306 47.619 10.23 0.00 0.00 2.10
2157 2355 3.917324 TTACTCGGAGGGGGATAAGAT 57.083 47.619 10.23 0.00 0.00 2.40
2197 2395 4.141158 TGAAGGGAGCTTCTTTTCCTTTCT 60.141 41.667 14.01 0.00 45.06 2.52
2198 2396 3.760738 AGGGAGCTTCTTTTCCTTTCTG 58.239 45.455 0.00 0.00 33.85 3.02
2293 2491 4.896482 TGGCAAAAGTGGTGGTTAATTAGT 59.104 37.500 0.00 0.00 0.00 2.24
2298 2496 7.593644 GCAAAAGTGGTGGTTAATTAGTTAGTG 59.406 37.037 0.00 0.00 0.00 2.74
2299 2497 8.626526 CAAAAGTGGTGGTTAATTAGTTAGTGT 58.373 33.333 0.00 0.00 0.00 3.55
2305 2523 9.603921 TGGTGGTTAATTAGTTAGTGTATTAGC 57.396 33.333 0.00 0.00 0.00 3.09
2306 2524 9.603921 GGTGGTTAATTAGTTAGTGTATTAGCA 57.396 33.333 0.00 0.00 0.00 3.49
2317 2535 3.055094 AGTGTATTAGCACAGGGTTGGAG 60.055 47.826 0.00 0.00 41.52 3.86
2339 2557 5.804639 AGTGTTGTAGATTGTGGCAAGATA 58.195 37.500 0.00 0.00 0.00 1.98
2391 2624 5.988561 TGTTTTGTTTTGCAGAAGAAGTTGT 59.011 32.000 0.00 0.00 0.00 3.32
2538 2777 6.679843 TGTGTTTGTGTATGTACATCGTCTA 58.320 36.000 12.68 0.00 38.63 2.59
2560 2799 5.644977 ACTGCTGCTGCTACGATAATATA 57.355 39.130 17.00 0.00 40.48 0.86
2561 2800 6.214191 ACTGCTGCTGCTACGATAATATAT 57.786 37.500 17.00 0.00 40.48 0.86
2562 2801 6.634805 ACTGCTGCTGCTACGATAATATATT 58.365 36.000 17.00 2.97 40.48 1.28
2667 2906 1.819229 GCATCTGCTTCCTCCTCGA 59.181 57.895 0.00 0.00 38.21 4.04
2685 2924 2.819019 TCGAAGCATTGCATCAGGAAAA 59.181 40.909 11.91 0.00 0.00 2.29
2686 2925 3.255395 TCGAAGCATTGCATCAGGAAAAA 59.745 39.130 11.91 0.00 0.00 1.94
2694 2933 7.990886 AGCATTGCATCAGGAAAAATATTTCAT 59.009 29.630 11.91 0.00 45.53 2.57
2698 2937 6.979817 TGCATCAGGAAAAATATTTCATTCGG 59.020 34.615 0.10 0.12 45.53 4.30
2734 3001 1.123077 AGGATAGTGATGCTTGGCGA 58.877 50.000 0.00 0.00 27.16 5.54
2736 3003 2.072298 GGATAGTGATGCTTGGCGATC 58.928 52.381 0.00 0.00 0.00 3.69
2753 3020 4.140518 CGATCAGTCGTCAGATAGGAAG 57.859 50.000 0.00 0.00 42.78 3.46
2754 3021 3.562141 CGATCAGTCGTCAGATAGGAAGT 59.438 47.826 0.00 0.00 42.78 3.01
2755 3022 4.035792 CGATCAGTCGTCAGATAGGAAGTT 59.964 45.833 0.00 0.00 42.78 2.66
2756 3023 5.236695 CGATCAGTCGTCAGATAGGAAGTTA 59.763 44.000 0.00 0.00 42.78 2.24
2757 3024 6.565060 CGATCAGTCGTCAGATAGGAAGTTAG 60.565 46.154 0.00 0.00 42.78 2.34
2758 3025 4.882427 TCAGTCGTCAGATAGGAAGTTAGG 59.118 45.833 0.00 0.00 0.00 2.69
2802 3069 1.487558 GCCCCGGTTACTTCCTAATCA 59.512 52.381 0.00 0.00 0.00 2.57
2815 3082 5.104318 ACTTCCTAATCACCCTGATTCCTTC 60.104 44.000 0.70 0.00 43.03 3.46
2816 3083 3.716872 TCCTAATCACCCTGATTCCTTCC 59.283 47.826 0.70 0.00 43.03 3.46
2818 3085 3.941704 AATCACCCTGATTCCTTCCTC 57.058 47.619 0.00 0.00 43.03 3.71
2820 3087 2.472029 TCACCCTGATTCCTTCCTCTC 58.528 52.381 0.00 0.00 0.00 3.20
2823 3090 3.265479 CACCCTGATTCCTTCCTCTCTTT 59.735 47.826 0.00 0.00 0.00 2.52
2826 3093 4.946772 CCCTGATTCCTTCCTCTCTTTTTC 59.053 45.833 0.00 0.00 0.00 2.29
2827 3094 4.946772 CCTGATTCCTTCCTCTCTTTTTCC 59.053 45.833 0.00 0.00 0.00 3.13
2836 3103 2.553247 CCTCTCTTTTTCCCTTCCGCTT 60.553 50.000 0.00 0.00 0.00 4.68
2853 3120 0.800631 CTTGAGAAGCGCATGCAAGA 59.199 50.000 19.57 0.00 46.23 3.02
2854 3121 1.198408 CTTGAGAAGCGCATGCAAGAA 59.802 47.619 19.57 0.00 46.23 2.52
2855 3122 1.456296 TGAGAAGCGCATGCAAGAAT 58.544 45.000 19.57 0.00 46.23 2.40
2856 3123 1.399440 TGAGAAGCGCATGCAAGAATC 59.601 47.619 19.57 10.12 46.23 2.52
2857 3124 1.399440 GAGAAGCGCATGCAAGAATCA 59.601 47.619 19.57 0.00 46.23 2.57
2858 3125 2.022195 AGAAGCGCATGCAAGAATCAT 58.978 42.857 19.57 0.00 46.23 2.45
2859 3126 2.117137 GAAGCGCATGCAAGAATCATG 58.883 47.619 19.57 0.00 46.23 3.07
2860 3127 0.384309 AGCGCATGCAAGAATCATGG 59.616 50.000 19.57 0.00 46.23 3.66
2861 3128 0.101759 GCGCATGCAAGAATCATGGT 59.898 50.000 19.57 0.00 41.08 3.55
2862 3129 1.835121 CGCATGCAAGAATCATGGTG 58.165 50.000 19.57 0.00 41.08 4.17
2863 3130 1.535226 CGCATGCAAGAATCATGGTGG 60.535 52.381 19.57 0.00 41.08 4.61
2864 3131 1.202486 GCATGCAAGAATCATGGTGGG 60.202 52.381 14.21 0.00 41.08 4.61
2865 3132 2.380941 CATGCAAGAATCATGGTGGGA 58.619 47.619 0.00 0.00 38.06 4.37
2866 3133 2.133281 TGCAAGAATCATGGTGGGAG 57.867 50.000 0.00 0.00 0.00 4.30
2867 3134 1.634973 TGCAAGAATCATGGTGGGAGA 59.365 47.619 0.00 0.00 0.00 3.71
2868 3135 2.295885 GCAAGAATCATGGTGGGAGAG 58.704 52.381 0.00 0.00 0.00 3.20
2869 3136 2.092753 GCAAGAATCATGGTGGGAGAGA 60.093 50.000 0.00 0.00 0.00 3.10
2870 3137 3.623203 GCAAGAATCATGGTGGGAGAGAA 60.623 47.826 0.00 0.00 0.00 2.87
2871 3138 4.592942 CAAGAATCATGGTGGGAGAGAAA 58.407 43.478 0.00 0.00 0.00 2.52
2872 3139 4.934797 AGAATCATGGTGGGAGAGAAAA 57.065 40.909 0.00 0.00 0.00 2.29
2873 3140 4.853007 AGAATCATGGTGGGAGAGAAAAG 58.147 43.478 0.00 0.00 0.00 2.27
2874 3141 3.659183 ATCATGGTGGGAGAGAAAAGG 57.341 47.619 0.00 0.00 0.00 3.11
2875 3142 2.631384 TCATGGTGGGAGAGAAAAGGA 58.369 47.619 0.00 0.00 0.00 3.36
2876 3143 2.986019 TCATGGTGGGAGAGAAAAGGAA 59.014 45.455 0.00 0.00 0.00 3.36
2877 3144 3.397618 TCATGGTGGGAGAGAAAAGGAAA 59.602 43.478 0.00 0.00 0.00 3.13
2878 3145 4.044571 TCATGGTGGGAGAGAAAAGGAAAT 59.955 41.667 0.00 0.00 0.00 2.17
2879 3146 4.034285 TGGTGGGAGAGAAAAGGAAATC 57.966 45.455 0.00 0.00 0.00 2.17
2880 3147 3.010420 GGTGGGAGAGAAAAGGAAATCG 58.990 50.000 0.00 0.00 0.00 3.34
2881 3148 2.420372 GTGGGAGAGAAAAGGAAATCGC 59.580 50.000 0.00 0.00 0.00 4.58
2882 3149 1.666189 GGGAGAGAAAAGGAAATCGCG 59.334 52.381 0.00 0.00 0.00 5.87
2883 3150 2.347731 GGAGAGAAAAGGAAATCGCGT 58.652 47.619 5.77 0.00 0.00 6.01
2884 3151 2.348971 GGAGAGAAAAGGAAATCGCGTC 59.651 50.000 5.77 0.00 0.00 5.19
2885 3152 2.993899 GAGAGAAAAGGAAATCGCGTCA 59.006 45.455 5.77 0.00 0.00 4.35
2886 3153 3.600388 AGAGAAAAGGAAATCGCGTCAT 58.400 40.909 5.77 0.00 0.00 3.06
2887 3154 4.755411 AGAGAAAAGGAAATCGCGTCATA 58.245 39.130 5.77 0.00 0.00 2.15
2888 3155 4.806247 AGAGAAAAGGAAATCGCGTCATAG 59.194 41.667 5.77 0.00 0.00 2.23
2889 3156 4.755411 AGAAAAGGAAATCGCGTCATAGA 58.245 39.130 5.77 0.00 0.00 1.98
2890 3157 4.806247 AGAAAAGGAAATCGCGTCATAGAG 59.194 41.667 5.77 0.00 0.00 2.43
2891 3158 2.802787 AGGAAATCGCGTCATAGAGG 57.197 50.000 5.77 0.00 0.00 3.69
2892 3159 2.307768 AGGAAATCGCGTCATAGAGGA 58.692 47.619 5.77 0.00 0.00 3.71
2893 3160 2.894126 AGGAAATCGCGTCATAGAGGAT 59.106 45.455 5.77 0.00 0.00 3.24
2894 3161 3.322254 AGGAAATCGCGTCATAGAGGATT 59.678 43.478 5.77 0.00 0.00 3.01
2895 3162 3.675698 GGAAATCGCGTCATAGAGGATTC 59.324 47.826 5.77 0.00 0.00 2.52
2896 3163 4.299155 GAAATCGCGTCATAGAGGATTCA 58.701 43.478 5.77 0.00 0.00 2.57
2897 3164 4.322080 AATCGCGTCATAGAGGATTCAA 57.678 40.909 5.77 0.00 0.00 2.69
2898 3165 3.793797 TCGCGTCATAGAGGATTCAAA 57.206 42.857 5.77 0.00 0.00 2.69
2899 3166 3.444916 TCGCGTCATAGAGGATTCAAAC 58.555 45.455 5.77 0.00 0.00 2.93
2900 3167 3.130516 TCGCGTCATAGAGGATTCAAACT 59.869 43.478 5.77 0.00 0.00 2.66
2901 3168 3.487574 CGCGTCATAGAGGATTCAAACTC 59.512 47.826 0.00 0.00 0.00 3.01
2902 3169 3.804873 GCGTCATAGAGGATTCAAACTCC 59.195 47.826 0.00 0.00 34.27 3.85
2903 3170 4.045104 CGTCATAGAGGATTCAAACTCCG 58.955 47.826 0.00 0.00 37.88 4.63
2904 3171 3.804873 GTCATAGAGGATTCAAACTCCGC 59.195 47.826 0.00 0.00 37.88 5.54
2905 3172 3.706594 TCATAGAGGATTCAAACTCCGCT 59.293 43.478 1.34 1.34 44.04 5.52
2906 3173 2.682155 AGAGGATTCAAACTCCGCTC 57.318 50.000 0.00 0.00 38.38 5.03
2907 3174 2.183679 AGAGGATTCAAACTCCGCTCT 58.816 47.619 0.00 0.00 38.38 4.09
2908 3175 2.093764 AGAGGATTCAAACTCCGCTCTG 60.094 50.000 0.00 0.00 38.38 3.35
2909 3176 1.625818 AGGATTCAAACTCCGCTCTGT 59.374 47.619 0.00 0.00 37.88 3.41
2910 3177 1.734465 GGATTCAAACTCCGCTCTGTG 59.266 52.381 0.00 0.00 0.00 3.66
2911 3178 2.417719 GATTCAAACTCCGCTCTGTGT 58.582 47.619 0.00 0.00 0.00 3.72
2912 3179 1.865865 TTCAAACTCCGCTCTGTGTC 58.134 50.000 0.00 0.00 0.00 3.67
2913 3180 0.318699 TCAAACTCCGCTCTGTGTCG 60.319 55.000 0.00 0.00 0.00 4.35
2914 3181 0.318699 CAAACTCCGCTCTGTGTCGA 60.319 55.000 0.00 0.00 0.00 4.20
2915 3182 0.318784 AAACTCCGCTCTGTGTCGAC 60.319 55.000 9.11 9.11 0.00 4.20
2916 3183 2.143594 AACTCCGCTCTGTGTCGACC 62.144 60.000 14.12 5.06 0.00 4.79
2917 3184 3.343788 CTCCGCTCTGTGTCGACCC 62.344 68.421 14.12 0.94 0.00 4.46
2918 3185 3.680786 CCGCTCTGTGTCGACCCA 61.681 66.667 14.12 6.86 0.00 4.51
2955 3222 3.833650 TCACAATGTTCATGATTTGGCCT 59.166 39.130 3.32 0.00 0.00 5.19
2957 3224 4.390603 CACAATGTTCATGATTTGGCCTTG 59.609 41.667 3.32 0.00 0.00 3.61
3050 3317 3.489355 TGAAGATGTTGGTGAGCACATT 58.511 40.909 2.75 0.00 33.62 2.71
3071 3338 3.319137 TTCGACTCCCACAATCTCAAG 57.681 47.619 0.00 0.00 0.00 3.02
3085 3352 4.713824 ATCTCAAGATGTTGTGCCATTG 57.286 40.909 2.11 0.00 34.98 2.82
3090 3357 1.806542 AGATGTTGTGCCATTGTCGAC 59.193 47.619 9.11 9.11 0.00 4.20
3098 3365 1.021390 GCCATTGTCGACTCCCACAG 61.021 60.000 17.92 0.40 0.00 3.66
3107 3375 1.466167 CGACTCCCACAGCTCAAAATG 59.534 52.381 0.00 0.00 0.00 2.32
3114 3382 2.161855 CACAGCTCAAAATGTGCCCTA 58.838 47.619 1.19 0.00 40.27 3.53
3119 3387 2.682856 GCTCAAAATGTGCCCTATTCGA 59.317 45.455 0.00 0.00 31.28 3.71
3133 3401 7.117956 GTGCCCTATTCGAATTATCTTTACCTC 59.882 40.741 17.19 0.00 0.00 3.85
3184 3452 9.513906 TTGTAGGAAAAACATCAACATCTATGA 57.486 29.630 0.00 0.00 0.00 2.15
3205 3473 3.819564 TGTCATACCAGGCATCACTAC 57.180 47.619 0.00 0.00 0.00 2.73
3206 3474 3.374764 TGTCATACCAGGCATCACTACT 58.625 45.455 0.00 0.00 0.00 2.57
3213 3481 3.327757 ACCAGGCATCACTACTTCTTCAA 59.672 43.478 0.00 0.00 0.00 2.69
3214 3482 4.018960 ACCAGGCATCACTACTTCTTCAAT 60.019 41.667 0.00 0.00 0.00 2.57
3215 3483 4.946157 CCAGGCATCACTACTTCTTCAATT 59.054 41.667 0.00 0.00 0.00 2.32
3216 3484 5.416952 CCAGGCATCACTACTTCTTCAATTT 59.583 40.000 0.00 0.00 0.00 1.82
3217 3485 6.071728 CCAGGCATCACTACTTCTTCAATTTT 60.072 38.462 0.00 0.00 0.00 1.82
3218 3486 7.373493 CAGGCATCACTACTTCTTCAATTTTT 58.627 34.615 0.00 0.00 0.00 1.94
3253 3521 9.702253 TTATCACTACCTCTTCATAAGACTTCT 57.298 33.333 0.00 0.00 33.12 2.85
3254 3522 7.633193 TCACTACCTCTTCATAAGACTTCTC 57.367 40.000 0.00 0.00 33.12 2.87
3255 3523 7.175797 TCACTACCTCTTCATAAGACTTCTCA 58.824 38.462 0.00 0.00 33.12 3.27
3256 3524 7.836685 TCACTACCTCTTCATAAGACTTCTCAT 59.163 37.037 0.00 0.00 33.12 2.90
3257 3525 7.920151 CACTACCTCTTCATAAGACTTCTCATG 59.080 40.741 0.00 0.00 33.12 3.07
3258 3526 6.865834 ACCTCTTCATAAGACTTCTCATGT 57.134 37.500 0.00 0.00 33.12 3.21
3259 3527 6.872920 ACCTCTTCATAAGACTTCTCATGTC 58.127 40.000 0.00 0.00 33.12 3.06
3260 3528 6.667414 ACCTCTTCATAAGACTTCTCATGTCT 59.333 38.462 0.00 0.00 45.55 3.41
3271 3539 8.410673 AGACTTCTCATGTCTTAAGTAACTCA 57.589 34.615 1.63 0.00 41.45 3.41
3272 3540 9.030452 AGACTTCTCATGTCTTAAGTAACTCAT 57.970 33.333 1.63 0.00 41.45 2.90
3278 3546 9.743057 CTCATGTCTTAAGTAACTCATAAGAGG 57.257 37.037 1.63 0.00 46.44 3.69
3279 3547 8.696374 TCATGTCTTAAGTAACTCATAAGAGGG 58.304 37.037 1.63 0.00 46.44 4.30
3280 3548 7.419711 TGTCTTAAGTAACTCATAAGAGGGG 57.580 40.000 1.63 0.00 46.44 4.79
3281 3549 7.186972 TGTCTTAAGTAACTCATAAGAGGGGA 58.813 38.462 1.63 0.00 46.44 4.81
3282 3550 7.844779 TGTCTTAAGTAACTCATAAGAGGGGAT 59.155 37.037 1.63 0.00 46.44 3.85
3283 3551 8.145122 GTCTTAAGTAACTCATAAGAGGGGATG 58.855 40.741 1.63 0.00 46.44 3.51
3284 3552 5.896073 AAGTAACTCATAAGAGGGGATGG 57.104 43.478 0.00 0.00 46.44 3.51
3285 3553 4.897051 AGTAACTCATAAGAGGGGATGGT 58.103 43.478 0.00 0.00 46.44 3.55
3286 3554 5.289510 AGTAACTCATAAGAGGGGATGGTT 58.710 41.667 0.00 0.00 46.44 3.67
3287 3555 6.449956 AGTAACTCATAAGAGGGGATGGTTA 58.550 40.000 0.00 0.00 46.44 2.85
3288 3556 6.906901 AGTAACTCATAAGAGGGGATGGTTAA 59.093 38.462 0.00 0.00 46.44 2.01
3289 3557 5.896073 ACTCATAAGAGGGGATGGTTAAG 57.104 43.478 0.00 0.00 46.44 1.85
3290 3558 4.660771 ACTCATAAGAGGGGATGGTTAAGG 59.339 45.833 0.00 0.00 46.44 2.69
3291 3559 3.394606 TCATAAGAGGGGATGGTTAAGGC 59.605 47.826 0.00 0.00 0.00 4.35
3292 3560 1.681229 AAGAGGGGATGGTTAAGGCA 58.319 50.000 0.00 0.00 0.00 4.75
3293 3561 1.216990 AGAGGGGATGGTTAAGGCAG 58.783 55.000 0.00 0.00 0.00 4.85
3294 3562 0.183731 GAGGGGATGGTTAAGGCAGG 59.816 60.000 0.00 0.00 0.00 4.85
3295 3563 0.552615 AGGGGATGGTTAAGGCAGGT 60.553 55.000 0.00 0.00 0.00 4.00
3296 3564 0.335019 GGGGATGGTTAAGGCAGGTT 59.665 55.000 0.00 0.00 0.00 3.50
3297 3565 1.273041 GGGGATGGTTAAGGCAGGTTT 60.273 52.381 0.00 0.00 0.00 3.27
3298 3566 2.100197 GGGATGGTTAAGGCAGGTTTC 58.900 52.381 0.00 0.00 0.00 2.78
3299 3567 2.100197 GGATGGTTAAGGCAGGTTTCC 58.900 52.381 0.00 0.00 0.00 3.13
3300 3568 2.556559 GGATGGTTAAGGCAGGTTTCCA 60.557 50.000 0.00 0.00 0.00 3.53
3301 3569 1.989706 TGGTTAAGGCAGGTTTCCAC 58.010 50.000 0.00 0.00 0.00 4.02
3302 3570 1.215673 TGGTTAAGGCAGGTTTCCACA 59.784 47.619 0.00 0.00 0.00 4.17
3303 3571 2.312390 GGTTAAGGCAGGTTTCCACAA 58.688 47.619 0.00 0.00 0.00 3.33
3304 3572 2.296190 GGTTAAGGCAGGTTTCCACAAG 59.704 50.000 0.00 0.00 0.00 3.16
3305 3573 2.286365 TAAGGCAGGTTTCCACAAGG 57.714 50.000 0.00 0.00 0.00 3.61
3306 3574 0.555769 AAGGCAGGTTTCCACAAGGA 59.444 50.000 0.00 0.00 43.93 3.36
3314 3582 2.281484 TCCACAAGGAAGCGCACC 60.281 61.111 11.47 13.25 42.23 5.01
3315 3583 2.281761 CCACAAGGAAGCGCACCT 60.282 61.111 18.15 18.15 39.69 4.00
3316 3584 1.898574 CCACAAGGAAGCGCACCTT 60.899 57.895 25.74 25.74 47.00 3.50
3317 3585 0.605319 CCACAAGGAAGCGCACCTTA 60.605 55.000 28.91 0.00 44.65 2.69
3318 3586 0.798776 CACAAGGAAGCGCACCTTAG 59.201 55.000 28.91 24.54 44.65 2.18
3319 3587 0.396811 ACAAGGAAGCGCACCTTAGT 59.603 50.000 28.91 24.99 44.65 2.24
3320 3588 0.798776 CAAGGAAGCGCACCTTAGTG 59.201 55.000 28.91 18.81 44.65 2.74
3332 3600 4.795970 CACCTTAGTGCGGAATATTCAC 57.204 45.455 17.07 8.97 37.14 3.18
3333 3601 4.188462 CACCTTAGTGCGGAATATTCACA 58.812 43.478 17.07 11.37 37.14 3.58
3334 3602 4.271049 CACCTTAGTGCGGAATATTCACAG 59.729 45.833 17.07 8.74 37.14 3.66
3335 3603 3.809832 CCTTAGTGCGGAATATTCACAGG 59.190 47.826 17.07 7.53 33.44 4.00
3336 3604 1.668419 AGTGCGGAATATTCACAGGC 58.332 50.000 17.07 13.57 33.44 4.85
3337 3605 0.304705 GTGCGGAATATTCACAGGCG 59.695 55.000 17.07 11.39 0.00 5.52
3338 3606 1.279840 GCGGAATATTCACAGGCGC 59.720 57.895 17.07 16.76 0.00 6.53
3339 3607 1.564622 CGGAATATTCACAGGCGCG 59.435 57.895 17.07 0.00 0.00 6.86
3340 3608 1.831389 CGGAATATTCACAGGCGCGG 61.831 60.000 17.07 0.00 0.00 6.46
3341 3609 0.531974 GGAATATTCACAGGCGCGGA 60.532 55.000 17.07 0.00 0.00 5.54
3342 3610 0.582005 GAATATTCACAGGCGCGGAC 59.418 55.000 8.83 0.00 0.00 4.79
3343 3611 0.107897 AATATTCACAGGCGCGGACA 60.108 50.000 8.83 0.00 0.00 4.02
3344 3612 0.107897 ATATTCACAGGCGCGGACAA 60.108 50.000 8.83 0.00 0.00 3.18
3345 3613 0.739462 TATTCACAGGCGCGGACAAG 60.739 55.000 8.83 0.00 0.00 3.16
3354 3622 4.742201 GCGGACAAGCTCGCCTGA 62.742 66.667 6.26 0.00 45.42 3.86
3355 3623 2.185350 CGGACAAGCTCGCCTGAT 59.815 61.111 0.00 0.00 0.00 2.90
3356 3624 1.880340 CGGACAAGCTCGCCTGATC 60.880 63.158 0.00 0.00 0.00 2.92
3357 3625 1.522580 GGACAAGCTCGCCTGATCC 60.523 63.158 0.00 0.00 0.00 3.36
3358 3626 1.522580 GACAAGCTCGCCTGATCCC 60.523 63.158 0.00 0.00 0.00 3.85
3359 3627 2.587194 CAAGCTCGCCTGATCCCG 60.587 66.667 0.00 0.00 0.00 5.14
3360 3628 3.854669 AAGCTCGCCTGATCCCGG 61.855 66.667 0.00 0.00 0.00 5.73
3361 3629 4.841617 AGCTCGCCTGATCCCGGA 62.842 66.667 0.73 0.00 0.00 5.14
3362 3630 3.849951 GCTCGCCTGATCCCGGAA 61.850 66.667 0.73 0.00 0.00 4.30
3363 3631 3.142393 CTCGCCTGATCCCGGAAT 58.858 61.111 0.73 0.00 0.00 3.01
3364 3632 1.005630 CTCGCCTGATCCCGGAATC 60.006 63.158 0.73 0.00 0.00 2.52
3365 3633 2.356313 CGCCTGATCCCGGAATCG 60.356 66.667 0.73 0.00 0.00 3.34
3366 3634 2.856628 CGCCTGATCCCGGAATCGA 61.857 63.158 0.73 0.00 39.00 3.59
3367 3635 1.674057 GCCTGATCCCGGAATCGAT 59.326 57.895 0.73 0.00 39.00 3.59
3368 3636 0.895530 GCCTGATCCCGGAATCGATA 59.104 55.000 0.73 0.00 39.00 2.92
3369 3637 1.134965 GCCTGATCCCGGAATCGATAG 60.135 57.143 0.73 0.00 39.00 2.08
3370 3638 1.478510 CCTGATCCCGGAATCGATAGG 59.521 57.143 0.73 0.00 39.00 2.57
3371 3639 0.895530 TGATCCCGGAATCGATAGGC 59.104 55.000 0.73 0.00 39.00 3.93
3372 3640 0.179134 GATCCCGGAATCGATAGGCG 60.179 60.000 0.73 0.00 42.69 5.52
3373 3641 0.898789 ATCCCGGAATCGATAGGCGT 60.899 55.000 0.73 0.00 41.80 5.68
3374 3642 1.111116 TCCCGGAATCGATAGGCGTT 61.111 55.000 0.73 0.00 41.80 4.84
3375 3643 0.944311 CCCGGAATCGATAGGCGTTG 60.944 60.000 0.73 0.00 41.80 4.10
3376 3644 0.944311 CCGGAATCGATAGGCGTTGG 60.944 60.000 0.00 0.00 41.80 3.77
3377 3645 0.249322 CGGAATCGATAGGCGTTGGT 60.249 55.000 0.00 0.00 41.80 3.67
3378 3646 1.805120 CGGAATCGATAGGCGTTGGTT 60.805 52.381 0.00 0.00 41.80 3.67
3379 3647 1.865340 GGAATCGATAGGCGTTGGTTC 59.135 52.381 0.00 0.00 41.80 3.62
3380 3648 1.521423 GAATCGATAGGCGTTGGTTCG 59.479 52.381 0.00 0.00 41.80 3.95
3387 3655 4.072088 GCGTTGGTTCGCGTCAGG 62.072 66.667 5.77 1.46 46.31 3.86
3388 3656 2.355363 CGTTGGTTCGCGTCAGGA 60.355 61.111 5.77 0.00 0.00 3.86
3389 3657 1.736645 CGTTGGTTCGCGTCAGGAT 60.737 57.895 5.77 0.00 0.00 3.24
3390 3658 0.457166 CGTTGGTTCGCGTCAGGATA 60.457 55.000 5.77 0.00 0.00 2.59
3391 3659 1.801395 CGTTGGTTCGCGTCAGGATAT 60.801 52.381 5.77 0.00 0.00 1.63
3392 3660 1.593006 GTTGGTTCGCGTCAGGATATG 59.407 52.381 5.77 0.00 0.00 1.78
3393 3661 0.104120 TGGTTCGCGTCAGGATATGG 59.896 55.000 5.77 0.00 0.00 2.74
3394 3662 0.600255 GGTTCGCGTCAGGATATGGG 60.600 60.000 5.77 0.00 0.00 4.00
3395 3663 0.387929 GTTCGCGTCAGGATATGGGA 59.612 55.000 5.77 0.00 0.00 4.37
3396 3664 1.000955 GTTCGCGTCAGGATATGGGAT 59.999 52.381 5.77 0.00 0.00 3.85
3397 3665 0.603065 TCGCGTCAGGATATGGGATG 59.397 55.000 5.77 0.00 0.00 3.51
3398 3666 1.016130 CGCGTCAGGATATGGGATGC 61.016 60.000 0.00 0.00 39.56 3.91
3399 3667 0.035317 GCGTCAGGATATGGGATGCA 59.965 55.000 0.00 0.00 41.88 3.96
3400 3668 1.339438 GCGTCAGGATATGGGATGCAT 60.339 52.381 0.00 0.00 41.88 3.96
3401 3669 2.353323 CGTCAGGATATGGGATGCATG 58.647 52.381 2.46 0.00 0.00 4.06
3402 3670 2.089980 GTCAGGATATGGGATGCATGC 58.910 52.381 11.82 11.82 0.00 4.06
3403 3671 1.092348 CAGGATATGGGATGCATGCG 58.908 55.000 14.09 0.00 0.00 4.73
3404 3672 0.034767 AGGATATGGGATGCATGCGG 60.035 55.000 14.09 0.00 0.00 5.69
3405 3673 0.322816 GGATATGGGATGCATGCGGT 60.323 55.000 14.09 3.84 0.00 5.68
3406 3674 1.065491 GGATATGGGATGCATGCGGTA 60.065 52.381 14.09 7.77 0.00 4.02
3407 3675 2.009774 GATATGGGATGCATGCGGTAC 58.990 52.381 14.09 4.78 0.00 3.34
3408 3676 1.055849 TATGGGATGCATGCGGTACT 58.944 50.000 14.09 0.00 0.00 2.73
3409 3677 0.183492 ATGGGATGCATGCGGTACTT 59.817 50.000 14.09 0.00 0.00 2.24
3410 3678 0.747644 TGGGATGCATGCGGTACTTG 60.748 55.000 14.09 0.00 0.00 3.16
3411 3679 1.356624 GGATGCATGCGGTACTTGC 59.643 57.895 14.09 4.03 46.82 4.01
3414 3682 2.793946 GCATGCGGTACTTGCAGG 59.206 61.111 17.02 17.02 46.98 4.85
3415 3683 2.793946 CATGCGGTACTTGCAGGC 59.206 61.111 16.29 2.22 46.98 4.85
3416 3684 2.819595 ATGCGGTACTTGCAGGCG 60.820 61.111 16.29 0.00 46.98 5.52
3417 3685 3.605749 ATGCGGTACTTGCAGGCGT 62.606 57.895 16.29 0.00 46.98 5.68
3418 3686 2.125832 GCGGTACTTGCAGGCGTA 60.126 61.111 0.00 0.00 0.00 4.42
3419 3687 1.520787 GCGGTACTTGCAGGCGTAT 60.521 57.895 0.00 0.00 0.00 3.06
3420 3688 0.249155 GCGGTACTTGCAGGCGTATA 60.249 55.000 0.00 0.00 0.00 1.47
3421 3689 1.484356 CGGTACTTGCAGGCGTATAC 58.516 55.000 0.00 0.00 0.00 1.47
3422 3690 1.484356 GGTACTTGCAGGCGTATACG 58.516 55.000 20.87 20.87 43.27 3.06
3423 3691 1.484356 GTACTTGCAGGCGTATACGG 58.516 55.000 25.55 11.10 40.23 4.02
3424 3692 1.105457 TACTTGCAGGCGTATACGGT 58.895 50.000 25.55 15.17 40.23 4.83
3425 3693 0.459585 ACTTGCAGGCGTATACGGTG 60.460 55.000 25.55 0.00 40.23 4.94
3426 3694 0.459585 CTTGCAGGCGTATACGGTGT 60.460 55.000 25.55 0.00 40.23 4.16
3427 3695 0.458889 TTGCAGGCGTATACGGTGTC 60.459 55.000 25.55 9.50 40.23 3.67
3428 3696 1.590792 GCAGGCGTATACGGTGTCC 60.591 63.158 25.55 17.63 40.23 4.02
3429 3697 2.012902 GCAGGCGTATACGGTGTCCT 62.013 60.000 25.55 19.47 40.23 3.85
3430 3698 1.311859 CAGGCGTATACGGTGTCCTA 58.688 55.000 25.55 0.00 40.23 2.94
3431 3699 1.884579 CAGGCGTATACGGTGTCCTAT 59.115 52.381 25.55 2.00 40.23 2.57
3432 3700 2.295349 CAGGCGTATACGGTGTCCTATT 59.705 50.000 25.55 1.33 40.23 1.73
3433 3701 2.961062 AGGCGTATACGGTGTCCTATTT 59.039 45.455 25.55 0.99 40.23 1.40
3434 3702 4.022935 CAGGCGTATACGGTGTCCTATTTA 60.023 45.833 25.55 0.00 40.23 1.40
3435 3703 4.584325 AGGCGTATACGGTGTCCTATTTAA 59.416 41.667 25.55 0.00 40.23 1.52
3436 3704 5.244626 AGGCGTATACGGTGTCCTATTTAAT 59.755 40.000 25.55 0.00 40.23 1.40
3437 3705 5.346822 GGCGTATACGGTGTCCTATTTAATG 59.653 44.000 25.55 0.00 40.23 1.90
3438 3706 5.922544 GCGTATACGGTGTCCTATTTAATGT 59.077 40.000 25.55 0.00 40.23 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.668096 TGTAACGTGCACGGTGGATC 60.668 55.000 38.38 24.08 44.95 3.36
65 66 0.461961 CCGGTGGTGGCTTTTTGAAA 59.538 50.000 0.00 0.00 0.00 2.69
68 69 3.532501 ACCGGTGGTGGCTTTTTG 58.467 55.556 6.12 0.00 32.98 2.44
88 89 3.069158 GGAGGGCGTACTTGCTTATCTTA 59.931 47.826 0.00 0.00 34.52 2.10
129 130 1.068585 GGTGCTTGCTTGCTTGCTT 59.931 52.632 10.35 0.00 0.00 3.91
130 131 2.129146 TGGTGCTTGCTTGCTTGCT 61.129 52.632 10.35 0.00 0.00 3.91
131 132 1.952635 GTGGTGCTTGCTTGCTTGC 60.953 57.895 3.47 0.00 0.00 4.01
132 133 0.872881 GTGTGGTGCTTGCTTGCTTG 60.873 55.000 3.47 0.00 0.00 4.01
172 173 4.111053 GGGAAAGGAGGACCGGCC 62.111 72.222 0.00 3.58 41.83 6.13
176 180 2.667108 GGACGGGGAAAGGAGGACC 61.667 68.421 0.00 0.00 0.00 4.46
320 336 0.850217 GAAAAACGGTGAAAAGCGGC 59.150 50.000 2.23 0.00 0.00 6.53
322 338 1.117234 CGGAAAAACGGTGAAAAGCG 58.883 50.000 0.00 0.00 0.00 4.68
323 339 2.197792 ACGGAAAAACGGTGAAAAGC 57.802 45.000 0.00 0.00 38.39 3.51
324 340 3.544682 GTGAACGGAAAAACGGTGAAAAG 59.455 43.478 0.00 0.00 38.39 2.27
325 341 3.500014 GTGAACGGAAAAACGGTGAAAA 58.500 40.909 0.00 0.00 38.39 2.29
326 342 2.159407 GGTGAACGGAAAAACGGTGAAA 60.159 45.455 0.00 0.00 38.39 2.69
327 343 1.401199 GGTGAACGGAAAAACGGTGAA 59.599 47.619 0.00 0.00 38.39 3.18
328 344 1.015868 GGTGAACGGAAAAACGGTGA 58.984 50.000 0.00 0.00 38.39 4.02
329 345 0.733729 TGGTGAACGGAAAAACGGTG 59.266 50.000 0.00 0.00 38.39 4.94
330 346 1.335496 CATGGTGAACGGAAAAACGGT 59.665 47.619 0.00 0.00 38.39 4.83
331 347 1.928595 GCATGGTGAACGGAAAAACGG 60.929 52.381 0.00 0.00 38.39 4.44
332 348 1.404477 GCATGGTGAACGGAAAAACG 58.596 50.000 0.00 0.00 40.31 3.60
333 349 1.067821 TGGCATGGTGAACGGAAAAAC 59.932 47.619 0.00 0.00 0.00 2.43
334 350 1.403814 TGGCATGGTGAACGGAAAAA 58.596 45.000 0.00 0.00 0.00 1.94
385 401 0.468226 TCTTGTCTTTGTCACCCGCT 59.532 50.000 0.00 0.00 0.00 5.52
454 470 2.796617 CGAGCGCTTTTGGCAACG 60.797 61.111 13.26 3.45 41.91 4.10
491 507 2.543012 CTGTCTGTGTCTCTGTTTGCTG 59.457 50.000 0.00 0.00 0.00 4.41
492 508 2.169352 ACTGTCTGTGTCTCTGTTTGCT 59.831 45.455 0.00 0.00 0.00 3.91
493 509 2.286294 CACTGTCTGTGTCTCTGTTTGC 59.714 50.000 1.84 0.00 41.53 3.68
495 511 4.471904 TTCACTGTCTGTGTCTCTGTTT 57.528 40.909 9.41 0.00 46.27 2.83
497 513 3.701542 TCTTTCACTGTCTGTGTCTCTGT 59.298 43.478 9.41 0.00 46.27 3.41
498 514 4.037327 TCTCTTTCACTGTCTGTGTCTCTG 59.963 45.833 9.41 0.87 46.27 3.35
499 515 4.211125 TCTCTTTCACTGTCTGTGTCTCT 58.789 43.478 9.41 0.00 46.27 3.10
530 565 4.874966 AGATGAGCAGCAAGACTTCATTAC 59.125 41.667 0.00 0.00 0.00 1.89
581 616 1.374947 CCGCTCTTTTCCCTGGACA 59.625 57.895 0.00 0.00 0.00 4.02
583 618 1.852157 ATGCCGCTCTTTTCCCTGGA 61.852 55.000 0.00 0.00 0.00 3.86
616 651 4.154347 AGCTGCTGTCCCTAGCGC 62.154 66.667 0.00 0.00 46.61 5.92
676 711 2.429610 GCCCCTACTCATTTGACTCGTA 59.570 50.000 0.00 0.00 0.00 3.43
840 907 0.459489 CGGGGCAAAGAGAGAGAGAG 59.541 60.000 0.00 0.00 0.00 3.20
841 908 0.972983 CCGGGGCAAAGAGAGAGAGA 60.973 60.000 0.00 0.00 0.00 3.10
842 909 1.519719 CCGGGGCAAAGAGAGAGAG 59.480 63.158 0.00 0.00 0.00 3.20
843 910 2.660064 GCCGGGGCAAAGAGAGAGA 61.660 63.158 2.18 0.00 41.49 3.10
917 984 1.477923 GGGGCAGTCAAAACACTGGTA 60.478 52.381 2.93 0.00 43.61 3.25
995 1069 1.760086 AGGCTCACCTCCATCTCGG 60.760 63.158 0.00 0.00 46.34 4.63
1063 1137 1.869774 CAGTGCACACTACAGCAAGA 58.130 50.000 21.04 0.00 43.20 3.02
1093 1199 4.166523 CGTCGTGAGATTCAGCTAAAAGA 58.833 43.478 0.00 0.00 45.19 2.52
1097 1203 1.472878 AGCGTCGTGAGATTCAGCTAA 59.527 47.619 0.00 0.00 45.19 3.09
1157 1269 2.039084 AGTGGAAGAGAACACATCCCAC 59.961 50.000 0.00 0.00 41.95 4.61
1216 1380 0.469705 ACATGCACTTTGCTGGGGAA 60.470 50.000 0.00 0.00 45.31 3.97
1278 1442 8.196103 GGTACTTTTGATCTAAGAAGGATACGT 58.804 37.037 13.01 0.00 46.39 3.57
1279 1443 8.195436 TGGTACTTTTGATCTAAGAAGGATACG 58.805 37.037 13.01 0.00 46.39 3.06
1280 1444 9.535878 CTGGTACTTTTGATCTAAGAAGGATAC 57.464 37.037 13.01 6.36 0.00 2.24
1282 1446 7.051000 GCTGGTACTTTTGATCTAAGAAGGAT 58.949 38.462 13.01 0.00 0.00 3.24
1285 1451 6.876257 AGTGCTGGTACTTTTGATCTAAGAAG 59.124 38.462 13.01 5.99 0.00 2.85
1287 1453 6.166279 CAGTGCTGGTACTTTTGATCTAAGA 58.834 40.000 13.01 0.00 0.00 2.10
1288 1454 5.163814 GCAGTGCTGGTACTTTTGATCTAAG 60.164 44.000 8.18 0.46 0.00 2.18
1312 1493 4.252073 AGAAGAAGCATTGTGAGCACTAG 58.748 43.478 1.99 0.00 0.00 2.57
1313 1494 4.248859 GAGAAGAAGCATTGTGAGCACTA 58.751 43.478 1.99 0.00 0.00 2.74
1314 1495 3.072944 GAGAAGAAGCATTGTGAGCACT 58.927 45.455 1.99 0.00 0.00 4.40
1315 1496 2.159734 CGAGAAGAAGCATTGTGAGCAC 60.160 50.000 0.00 0.00 0.00 4.40
1316 1497 2.071540 CGAGAAGAAGCATTGTGAGCA 58.928 47.619 0.00 0.00 0.00 4.26
1317 1498 2.341257 TCGAGAAGAAGCATTGTGAGC 58.659 47.619 0.00 0.00 0.00 4.26
1318 1499 4.431809 AGATCGAGAAGAAGCATTGTGAG 58.568 43.478 0.00 0.00 0.00 3.51
1378 1563 7.013274 TGGTTTTCTTCCTCAAGTATGAACAAG 59.987 37.037 0.00 0.00 34.49 3.16
1387 1573 2.554032 CGCATGGTTTTCTTCCTCAAGT 59.446 45.455 0.00 0.00 0.00 3.16
1427 1613 0.859232 CGAGACAACAAACGGACCAG 59.141 55.000 0.00 0.00 0.00 4.00
1432 1618 2.096909 GTCATCACGAGACAACAAACGG 60.097 50.000 0.00 0.00 36.06 4.44
1434 1620 3.059597 CCTGTCATCACGAGACAACAAAC 60.060 47.826 0.00 0.00 44.60 2.93
1435 1621 3.130633 CCTGTCATCACGAGACAACAAA 58.869 45.455 0.00 0.00 44.60 2.83
1503 1689 3.689347 CATCTCTTCCCACATGTTCCAA 58.311 45.455 0.00 0.00 0.00 3.53
1518 1704 2.284625 TGGGTGACGGGCATCTCT 60.285 61.111 0.00 0.00 0.00 3.10
1650 1836 4.346129 CTTTGTTGTGTCTGAGTTTGAGC 58.654 43.478 0.00 0.00 0.00 4.26
1651 1837 4.346129 GCTTTGTTGTGTCTGAGTTTGAG 58.654 43.478 0.00 0.00 0.00 3.02
1652 1838 3.128589 GGCTTTGTTGTGTCTGAGTTTGA 59.871 43.478 0.00 0.00 0.00 2.69
1655 1841 2.423538 GTGGCTTTGTTGTGTCTGAGTT 59.576 45.455 0.00 0.00 0.00 3.01
1672 1858 2.357009 CTGGAGATAATGTTGCTGTGGC 59.643 50.000 0.00 0.00 39.26 5.01
1678 1864 4.387598 AGCTGATCTGGAGATAATGTTGC 58.612 43.478 1.46 0.00 34.37 4.17
1681 1867 6.992664 ACTAAGCTGATCTGGAGATAATGT 57.007 37.500 1.46 0.00 34.37 2.71
1688 1874 4.440880 CTGGAAACTAAGCTGATCTGGAG 58.559 47.826 1.46 0.00 0.00 3.86
1701 1887 0.966179 TCGTCAGCTGCTGGAAACTA 59.034 50.000 27.79 9.61 31.51 2.24
1727 1913 1.044725 GACGACGCACTGCATTTTTG 58.955 50.000 1.11 0.00 0.00 2.44
1728 1914 0.040425 GGACGACGCACTGCATTTTT 60.040 50.000 1.11 0.00 0.00 1.94
1752 1938 2.829120 CTCGTTCTCCTCCCTCTTCTTT 59.171 50.000 0.00 0.00 0.00 2.52
1759 1945 0.973496 GGCTTCTCGTTCTCCTCCCT 60.973 60.000 0.00 0.00 0.00 4.20
1804 1990 0.042731 TTCTTCCTCCTCCCGGACAT 59.957 55.000 0.73 0.00 34.92 3.06
1807 1993 1.001760 CCTTCTTCCTCCTCCCGGA 59.998 63.158 0.73 0.00 37.82 5.14
1853 2042 0.695347 CTCCTTCTTCCCTTGCTGGT 59.305 55.000 0.00 0.00 0.00 4.00
1875 2064 0.322975 TCTTCCTCCTCTGTTGCTGC 59.677 55.000 0.00 0.00 0.00 5.25
1876 2065 2.697654 CTTCTTCCTCCTCTGTTGCTG 58.302 52.381 0.00 0.00 0.00 4.41
1877 2066 1.003003 GCTTCTTCCTCCTCTGTTGCT 59.997 52.381 0.00 0.00 0.00 3.91
1881 2070 0.178891 TGGGCTTCTTCCTCCTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
2000 2193 6.425417 TCACGTGACAGATTATTAGCACAAAA 59.575 34.615 15.76 0.00 0.00 2.44
2004 2198 6.414079 CAATCACGTGACAGATTATTAGCAC 58.586 40.000 22.71 0.00 33.41 4.40
2039 2233 5.869649 AAAAGTAAATCCACTTGGCAACT 57.130 34.783 0.00 0.00 38.74 3.16
2040 2234 6.156519 CCTAAAAGTAAATCCACTTGGCAAC 58.843 40.000 0.00 0.00 38.74 4.17
2041 2235 5.279256 GCCTAAAAGTAAATCCACTTGGCAA 60.279 40.000 0.00 0.00 41.41 4.52
2064 2260 5.376537 CATTTCTTTTCATCTTTTTGGCGC 58.623 37.500 0.00 0.00 0.00 6.53
2098 2296 3.833070 ACATGAGAGACGGGAAACTAACT 59.167 43.478 0.00 0.00 0.00 2.24
2100 2298 3.830178 TCACATGAGAGACGGGAAACTAA 59.170 43.478 0.00 0.00 0.00 2.24
2140 2338 4.048970 TCTTATCTTATCCCCCTCCGAG 57.951 50.000 0.00 0.00 0.00 4.63
2141 2339 4.694280 ATCTTATCTTATCCCCCTCCGA 57.306 45.455 0.00 0.00 0.00 4.55
2142 2340 6.183361 CCATTATCTTATCTTATCCCCCTCCG 60.183 46.154 0.00 0.00 0.00 4.63
2143 2341 6.909158 TCCATTATCTTATCTTATCCCCCTCC 59.091 42.308 0.00 0.00 0.00 4.30
2144 2342 7.996758 TCCATTATCTTATCTTATCCCCCTC 57.003 40.000 0.00 0.00 0.00 4.30
2157 2355 8.543774 GCTCCCTTCAGATTATCCATTATCTTA 58.456 37.037 0.00 0.00 0.00 2.10
2213 2411 8.746751 GCAAGAAGAGACATTTGTAAAAAGTTC 58.253 33.333 0.00 0.00 0.00 3.01
2222 2420 6.705863 AAGAAAGCAAGAAGAGACATTTGT 57.294 33.333 0.00 0.00 0.00 2.83
2293 2491 4.532916 TCCAACCCTGTGCTAATACACTAA 59.467 41.667 0.00 0.00 41.30 2.24
2298 2496 3.270877 CACTCCAACCCTGTGCTAATAC 58.729 50.000 0.00 0.00 0.00 1.89
2299 2497 2.910319 ACACTCCAACCCTGTGCTAATA 59.090 45.455 0.00 0.00 35.33 0.98
2305 2523 2.104111 TCTACAACACTCCAACCCTGTG 59.896 50.000 0.00 0.00 37.67 3.66
2306 2524 2.404559 TCTACAACACTCCAACCCTGT 58.595 47.619 0.00 0.00 0.00 4.00
2307 2525 3.703001 ATCTACAACACTCCAACCCTG 57.297 47.619 0.00 0.00 0.00 4.45
2310 2528 3.502211 CCACAATCTACAACACTCCAACC 59.498 47.826 0.00 0.00 0.00 3.77
2317 2535 5.874810 TCTATCTTGCCACAATCTACAACAC 59.125 40.000 0.00 0.00 0.00 3.32
2339 2557 3.632333 TCATCACCGTTAGATCTGGTCT 58.368 45.455 5.18 0.00 41.11 3.85
2391 2624 1.492133 CCTCCCAGCAGGTTCCTCAA 61.492 60.000 0.00 0.00 36.75 3.02
2489 2722 5.163673 ACTCGACCGATCTTAGTTTCCTAAC 60.164 44.000 0.00 0.00 34.36 2.34
2538 2777 2.898729 ATTATCGTAGCAGCAGCAGT 57.101 45.000 3.17 0.00 45.49 4.40
2560 2799 7.986889 GCAATTGGTTTCCATTACTTCCATAAT 59.013 33.333 7.72 0.00 31.53 1.28
2561 2800 7.180051 AGCAATTGGTTTCCATTACTTCCATAA 59.820 33.333 3.82 0.00 31.53 1.90
2562 2801 6.667414 AGCAATTGGTTTCCATTACTTCCATA 59.333 34.615 3.82 0.00 31.53 2.74
2667 2906 7.825270 TGAAATATTTTTCCTGATGCAATGCTT 59.175 29.630 6.82 0.00 40.49 3.91
2674 2913 6.421801 CCCGAATGAAATATTTTTCCTGATGC 59.578 38.462 1.43 0.00 40.49 3.91
2713 2952 1.600957 CGCCAAGCATCACTATCCTTG 59.399 52.381 0.00 0.00 35.61 3.61
2719 2986 1.482182 ACTGATCGCCAAGCATCACTA 59.518 47.619 0.00 0.00 0.00 2.74
2734 3001 5.533154 CCTAACTTCCTATCTGACGACTGAT 59.467 44.000 11.42 11.42 38.10 2.90
2736 3003 4.882427 TCCTAACTTCCTATCTGACGACTG 59.118 45.833 0.00 0.00 0.00 3.51
2751 3018 3.508793 TCGTTCGGATCTGTTCCTAACTT 59.491 43.478 15.82 0.00 44.30 2.66
2752 3019 3.087031 TCGTTCGGATCTGTTCCTAACT 58.913 45.455 15.82 0.00 44.30 2.24
2753 3020 3.119566 AGTCGTTCGGATCTGTTCCTAAC 60.120 47.826 10.55 10.55 43.48 2.34
2754 3021 3.087031 AGTCGTTCGGATCTGTTCCTAA 58.913 45.455 0.42 0.00 42.99 2.69
2755 3022 2.681848 GAGTCGTTCGGATCTGTTCCTA 59.318 50.000 0.42 0.00 42.99 2.94
2756 3023 1.473278 GAGTCGTTCGGATCTGTTCCT 59.527 52.381 0.42 0.00 42.99 3.36
2757 3024 1.201647 TGAGTCGTTCGGATCTGTTCC 59.798 52.381 0.42 0.00 41.59 3.62
2758 3025 2.631418 TGAGTCGTTCGGATCTGTTC 57.369 50.000 0.42 0.00 0.00 3.18
2802 3069 2.959421 AGAGAGGAAGGAATCAGGGT 57.041 50.000 0.00 0.00 0.00 4.34
2815 3082 1.003696 AGCGGAAGGGAAAAAGAGAGG 59.996 52.381 0.00 0.00 0.00 3.69
2816 3083 2.481289 AGCGGAAGGGAAAAAGAGAG 57.519 50.000 0.00 0.00 0.00 3.20
2818 3085 2.485814 CTCAAGCGGAAGGGAAAAAGAG 59.514 50.000 0.00 0.00 0.00 2.85
2820 3087 2.504367 TCTCAAGCGGAAGGGAAAAAG 58.496 47.619 0.00 0.00 0.00 2.27
2823 3090 1.882352 GCTTCTCAAGCGGAAGGGAAA 60.882 52.381 11.48 0.00 45.74 3.13
2826 3093 3.896479 GCTTCTCAAGCGGAAGGG 58.104 61.111 11.48 0.00 45.74 3.95
2836 3103 1.399440 GATTCTTGCATGCGCTTCTCA 59.601 47.619 14.09 0.00 39.64 3.27
2844 3111 1.202486 CCCACCATGATTCTTGCATGC 60.202 52.381 11.82 11.82 41.30 4.06
2853 3120 3.593328 TCCTTTTCTCTCCCACCATGATT 59.407 43.478 0.00 0.00 0.00 2.57
2854 3121 3.192944 TCCTTTTCTCTCCCACCATGAT 58.807 45.455 0.00 0.00 0.00 2.45
2855 3122 2.631384 TCCTTTTCTCTCCCACCATGA 58.369 47.619 0.00 0.00 0.00 3.07
2856 3123 3.439857 TTCCTTTTCTCTCCCACCATG 57.560 47.619 0.00 0.00 0.00 3.66
2857 3124 4.604156 GATTTCCTTTTCTCTCCCACCAT 58.396 43.478 0.00 0.00 0.00 3.55
2858 3125 3.559171 CGATTTCCTTTTCTCTCCCACCA 60.559 47.826 0.00 0.00 0.00 4.17
2859 3126 3.010420 CGATTTCCTTTTCTCTCCCACC 58.990 50.000 0.00 0.00 0.00 4.61
2860 3127 2.420372 GCGATTTCCTTTTCTCTCCCAC 59.580 50.000 0.00 0.00 0.00 4.61
2861 3128 2.711542 GCGATTTCCTTTTCTCTCCCA 58.288 47.619 0.00 0.00 0.00 4.37
2862 3129 1.666189 CGCGATTTCCTTTTCTCTCCC 59.334 52.381 0.00 0.00 0.00 4.30
2863 3130 2.347731 ACGCGATTTCCTTTTCTCTCC 58.652 47.619 15.93 0.00 0.00 3.71
2864 3131 2.993899 TGACGCGATTTCCTTTTCTCTC 59.006 45.455 15.93 0.00 0.00 3.20
2865 3132 3.040147 TGACGCGATTTCCTTTTCTCT 57.960 42.857 15.93 0.00 0.00 3.10
2866 3133 4.804139 TCTATGACGCGATTTCCTTTTCTC 59.196 41.667 15.93 0.00 0.00 2.87
2867 3134 4.755411 TCTATGACGCGATTTCCTTTTCT 58.245 39.130 15.93 0.00 0.00 2.52
2868 3135 4.025647 CCTCTATGACGCGATTTCCTTTTC 60.026 45.833 15.93 0.00 0.00 2.29
2869 3136 3.871594 CCTCTATGACGCGATTTCCTTTT 59.128 43.478 15.93 0.00 0.00 2.27
2870 3137 3.132289 TCCTCTATGACGCGATTTCCTTT 59.868 43.478 15.93 0.00 0.00 3.11
2871 3138 2.693591 TCCTCTATGACGCGATTTCCTT 59.306 45.455 15.93 0.00 0.00 3.36
2872 3139 2.307768 TCCTCTATGACGCGATTTCCT 58.692 47.619 15.93 0.00 0.00 3.36
2873 3140 2.795175 TCCTCTATGACGCGATTTCC 57.205 50.000 15.93 0.00 0.00 3.13
2874 3141 4.299155 TGAATCCTCTATGACGCGATTTC 58.701 43.478 15.93 0.00 0.00 2.17
2875 3142 4.322080 TGAATCCTCTATGACGCGATTT 57.678 40.909 15.93 0.00 0.00 2.17
2876 3143 4.322080 TTGAATCCTCTATGACGCGATT 57.678 40.909 15.93 0.00 0.00 3.34
2877 3144 4.051922 GTTTGAATCCTCTATGACGCGAT 58.948 43.478 15.93 0.00 0.00 4.58
2878 3145 3.130516 AGTTTGAATCCTCTATGACGCGA 59.869 43.478 15.93 0.00 0.00 5.87
2879 3146 3.448686 AGTTTGAATCCTCTATGACGCG 58.551 45.455 3.53 3.53 0.00 6.01
2880 3147 3.804873 GGAGTTTGAATCCTCTATGACGC 59.195 47.826 0.00 0.00 33.77 5.19
2881 3148 4.045104 CGGAGTTTGAATCCTCTATGACG 58.955 47.826 0.00 0.00 34.45 4.35
2882 3149 3.804873 GCGGAGTTTGAATCCTCTATGAC 59.195 47.826 0.00 0.00 34.45 3.06
2883 3150 3.706594 AGCGGAGTTTGAATCCTCTATGA 59.293 43.478 0.00 0.00 30.10 2.15
2884 3151 4.054671 GAGCGGAGTTTGAATCCTCTATG 58.945 47.826 0.00 0.00 32.05 2.23
2885 3152 3.964031 AGAGCGGAGTTTGAATCCTCTAT 59.036 43.478 0.00 0.00 32.05 1.98
2886 3153 3.131223 CAGAGCGGAGTTTGAATCCTCTA 59.869 47.826 0.00 0.00 32.05 2.43
2887 3154 2.093764 CAGAGCGGAGTTTGAATCCTCT 60.094 50.000 0.00 0.00 34.59 3.69
2888 3155 2.275318 CAGAGCGGAGTTTGAATCCTC 58.725 52.381 0.00 0.00 34.45 3.71
2889 3156 1.625818 ACAGAGCGGAGTTTGAATCCT 59.374 47.619 0.00 0.00 34.45 3.24
2890 3157 1.734465 CACAGAGCGGAGTTTGAATCC 59.266 52.381 0.00 0.00 0.00 3.01
2891 3158 2.413453 GACACAGAGCGGAGTTTGAATC 59.587 50.000 0.00 0.00 0.00 2.52
2892 3159 2.417719 GACACAGAGCGGAGTTTGAAT 58.582 47.619 0.00 0.00 0.00 2.57
2893 3160 1.865865 GACACAGAGCGGAGTTTGAA 58.134 50.000 0.00 0.00 0.00 2.69
2894 3161 0.318699 CGACACAGAGCGGAGTTTGA 60.319 55.000 0.00 0.00 0.00 2.69
2895 3162 0.318699 TCGACACAGAGCGGAGTTTG 60.319 55.000 0.00 0.00 0.00 2.93
2896 3163 0.318784 GTCGACACAGAGCGGAGTTT 60.319 55.000 11.55 0.00 0.00 2.66
2897 3164 1.286260 GTCGACACAGAGCGGAGTT 59.714 57.895 11.55 0.00 0.00 3.01
2898 3165 2.627737 GGTCGACACAGAGCGGAGT 61.628 63.158 18.91 0.00 0.00 3.85
2899 3166 2.179517 GGTCGACACAGAGCGGAG 59.820 66.667 18.91 0.00 0.00 4.63
2900 3167 3.371063 GGGTCGACACAGAGCGGA 61.371 66.667 18.91 0.00 39.35 5.54
2901 3168 2.890847 GATGGGTCGACACAGAGCGG 62.891 65.000 26.70 0.00 39.35 5.52
2902 3169 1.517257 GATGGGTCGACACAGAGCG 60.517 63.158 26.70 0.00 39.35 5.03
2903 3170 0.176680 ATGATGGGTCGACACAGAGC 59.823 55.000 26.70 17.49 37.86 4.09
2904 3171 1.205655 ACATGATGGGTCGACACAGAG 59.794 52.381 26.70 16.78 29.81 3.35
2905 3172 1.066929 CACATGATGGGTCGACACAGA 60.067 52.381 26.70 15.45 29.81 3.41
2906 3173 1.338105 ACACATGATGGGTCGACACAG 60.338 52.381 26.70 14.71 29.81 3.66
2907 3174 0.684535 ACACATGATGGGTCGACACA 59.315 50.000 25.05 25.05 0.00 3.72
2908 3175 1.808411 AACACATGATGGGTCGACAC 58.192 50.000 18.91 15.66 28.95 3.67
2909 3176 2.150390 CAAACACATGATGGGTCGACA 58.850 47.619 18.91 0.00 28.95 4.35
2910 3177 2.422597 TCAAACACATGATGGGTCGAC 58.577 47.619 7.13 7.13 28.95 4.20
2911 3178 2.849294 TCAAACACATGATGGGTCGA 57.151 45.000 0.00 0.00 28.95 4.20
2912 3179 4.082841 TGAATTCAAACACATGATGGGTCG 60.083 41.667 5.45 0.00 28.95 4.79
2913 3180 5.163513 GTGAATTCAAACACATGATGGGTC 58.836 41.667 10.35 0.00 28.95 4.46
2914 3181 4.588106 TGTGAATTCAAACACATGATGGGT 59.412 37.500 10.35 0.00 41.19 4.51
2915 3182 5.136816 TGTGAATTCAAACACATGATGGG 57.863 39.130 10.35 0.00 41.19 4.00
2916 3183 6.647481 ACATTGTGAATTCAAACACATGATGG 59.353 34.615 10.35 0.00 44.56 3.51
2917 3184 7.646446 ACATTGTGAATTCAAACACATGATG 57.354 32.000 10.35 6.92 44.56 3.07
2918 3185 7.927092 TGAACATTGTGAATTCAAACACATGAT 59.073 29.630 10.35 0.56 44.56 2.45
2955 3222 1.339610 CCTCACCAACATTTTCGCCAA 59.660 47.619 0.00 0.00 0.00 4.52
2957 3224 0.388520 GCCTCACCAACATTTTCGCC 60.389 55.000 0.00 0.00 0.00 5.54
2997 3264 3.685139 TGTGTTCTTCCTCACTGGATC 57.315 47.619 0.00 0.00 45.68 3.36
3007 3274 0.877743 GAGCAGGCTTGTGTTCTTCC 59.122 55.000 0.00 0.00 0.00 3.46
3012 3279 0.181114 TCAGTGAGCAGGCTTGTGTT 59.819 50.000 0.00 0.00 0.00 3.32
3050 3317 3.323691 TCTTGAGATTGTGGGAGTCGAAA 59.676 43.478 0.00 0.00 0.00 3.46
3085 3352 0.033504 TTTGAGCTGTGGGAGTCGAC 59.966 55.000 7.70 7.70 0.00 4.20
3090 3357 1.068055 GCACATTTTGAGCTGTGGGAG 60.068 52.381 0.00 0.00 42.37 4.30
3098 3365 2.682856 TCGAATAGGGCACATTTTGAGC 59.317 45.455 0.00 0.00 33.11 4.26
3107 3375 6.935208 AGGTAAAGATAATTCGAATAGGGCAC 59.065 38.462 11.83 4.21 0.00 5.01
3114 3382 9.462606 AAGGTTTGAGGTAAAGATAATTCGAAT 57.537 29.630 4.39 4.39 0.00 3.34
3184 3452 3.969976 AGTAGTGATGCCTGGTATGACAT 59.030 43.478 15.72 0.52 0.00 3.06
3192 3460 3.616956 TGAAGAAGTAGTGATGCCTGG 57.383 47.619 0.00 0.00 0.00 4.45
3227 3495 9.702253 AGAAGTCTTATGAAGAGGTAGTGATAA 57.298 33.333 0.00 0.00 38.41 1.75
3228 3496 9.344772 GAGAAGTCTTATGAAGAGGTAGTGATA 57.655 37.037 0.00 0.00 38.41 2.15
3229 3497 7.836685 TGAGAAGTCTTATGAAGAGGTAGTGAT 59.163 37.037 0.00 0.00 38.41 3.06
3230 3498 7.175797 TGAGAAGTCTTATGAAGAGGTAGTGA 58.824 38.462 0.00 0.00 38.41 3.41
3231 3499 7.397892 TGAGAAGTCTTATGAAGAGGTAGTG 57.602 40.000 0.00 0.00 38.41 2.74
3232 3500 7.617723 ACATGAGAAGTCTTATGAAGAGGTAGT 59.382 37.037 17.27 0.00 41.01 2.73
3233 3501 8.006298 ACATGAGAAGTCTTATGAAGAGGTAG 57.994 38.462 17.27 0.00 41.01 3.18
3234 3502 7.836685 AGACATGAGAAGTCTTATGAAGAGGTA 59.163 37.037 17.27 0.00 43.47 3.08
3235 3503 6.667414 AGACATGAGAAGTCTTATGAAGAGGT 59.333 38.462 17.27 0.00 43.47 3.85
3236 3504 7.111247 AGACATGAGAAGTCTTATGAAGAGG 57.889 40.000 17.27 0.00 43.47 3.69
3252 3520 9.743057 CCTCTTATGAGTTACTTAAGACATGAG 57.257 37.037 10.09 11.40 39.03 2.90
3253 3521 8.696374 CCCTCTTATGAGTTACTTAAGACATGA 58.304 37.037 10.09 3.39 39.03 3.07
3254 3522 7.928706 CCCCTCTTATGAGTTACTTAAGACATG 59.071 40.741 10.09 0.00 39.03 3.21
3255 3523 7.844779 TCCCCTCTTATGAGTTACTTAAGACAT 59.155 37.037 10.09 8.75 39.03 3.06
3256 3524 7.186972 TCCCCTCTTATGAGTTACTTAAGACA 58.813 38.462 10.09 2.00 39.03 3.41
3257 3525 7.657023 TCCCCTCTTATGAGTTACTTAAGAC 57.343 40.000 10.09 0.00 39.03 3.01
3258 3526 7.290248 CCATCCCCTCTTATGAGTTACTTAAGA 59.710 40.741 10.09 6.42 40.49 2.10
3259 3527 7.071321 ACCATCCCCTCTTATGAGTTACTTAAG 59.929 40.741 0.00 0.00 38.61 1.85
3260 3528 6.906901 ACCATCCCCTCTTATGAGTTACTTAA 59.093 38.462 5.03 0.00 38.61 1.85
3261 3529 6.449956 ACCATCCCCTCTTATGAGTTACTTA 58.550 40.000 5.03 0.00 38.61 2.24
3262 3530 5.289510 ACCATCCCCTCTTATGAGTTACTT 58.710 41.667 5.03 0.00 38.61 2.24
3263 3531 4.897051 ACCATCCCCTCTTATGAGTTACT 58.103 43.478 5.03 0.00 38.61 2.24
3264 3532 5.632034 AACCATCCCCTCTTATGAGTTAC 57.368 43.478 5.03 0.00 38.61 2.50
3265 3533 6.329197 CCTTAACCATCCCCTCTTATGAGTTA 59.671 42.308 5.03 0.00 38.61 2.24
3266 3534 5.132816 CCTTAACCATCCCCTCTTATGAGTT 59.867 44.000 5.03 0.00 38.61 3.01
3267 3535 4.660771 CCTTAACCATCCCCTCTTATGAGT 59.339 45.833 5.03 0.00 38.61 3.41
3268 3536 4.505742 GCCTTAACCATCCCCTCTTATGAG 60.506 50.000 0.00 0.00 39.92 2.90
3269 3537 3.394606 GCCTTAACCATCCCCTCTTATGA 59.605 47.826 0.00 0.00 0.00 2.15
3270 3538 3.138283 TGCCTTAACCATCCCCTCTTATG 59.862 47.826 0.00 0.00 0.00 1.90
3271 3539 3.395941 CTGCCTTAACCATCCCCTCTTAT 59.604 47.826 0.00 0.00 0.00 1.73
3272 3540 2.777692 CTGCCTTAACCATCCCCTCTTA 59.222 50.000 0.00 0.00 0.00 2.10
3273 3541 1.566231 CTGCCTTAACCATCCCCTCTT 59.434 52.381 0.00 0.00 0.00 2.85
3274 3542 1.216990 CTGCCTTAACCATCCCCTCT 58.783 55.000 0.00 0.00 0.00 3.69
3275 3543 0.183731 CCTGCCTTAACCATCCCCTC 59.816 60.000 0.00 0.00 0.00 4.30
3276 3544 0.552615 ACCTGCCTTAACCATCCCCT 60.553 55.000 0.00 0.00 0.00 4.79
3277 3545 0.335019 AACCTGCCTTAACCATCCCC 59.665 55.000 0.00 0.00 0.00 4.81
3278 3546 2.100197 GAAACCTGCCTTAACCATCCC 58.900 52.381 0.00 0.00 0.00 3.85
3279 3547 2.100197 GGAAACCTGCCTTAACCATCC 58.900 52.381 0.00 0.00 0.00 3.51
3280 3548 2.492088 GTGGAAACCTGCCTTAACCATC 59.508 50.000 0.00 0.00 0.00 3.51
3281 3549 2.158385 TGTGGAAACCTGCCTTAACCAT 60.158 45.455 0.00 0.00 0.00 3.55
3282 3550 1.215673 TGTGGAAACCTGCCTTAACCA 59.784 47.619 0.00 0.00 0.00 3.67
3283 3551 1.989706 TGTGGAAACCTGCCTTAACC 58.010 50.000 0.00 0.00 0.00 2.85
3284 3552 2.296190 CCTTGTGGAAACCTGCCTTAAC 59.704 50.000 0.00 0.00 34.57 2.01
3285 3553 2.175931 TCCTTGTGGAAACCTGCCTTAA 59.824 45.455 0.00 0.00 39.87 1.85
3286 3554 1.777878 TCCTTGTGGAAACCTGCCTTA 59.222 47.619 0.00 0.00 39.87 2.69
3287 3555 0.555769 TCCTTGTGGAAACCTGCCTT 59.444 50.000 0.00 0.00 39.87 4.35
3288 3556 2.240510 TCCTTGTGGAAACCTGCCT 58.759 52.632 0.00 0.00 39.87 4.75
3289 3557 4.920828 TCCTTGTGGAAACCTGCC 57.079 55.556 0.00 0.00 39.87 4.85
3297 3565 2.281484 GGTGCGCTTCCTTGTGGA 60.281 61.111 9.73 0.00 41.36 4.02
3298 3566 0.605319 TAAGGTGCGCTTCCTTGTGG 60.605 55.000 31.90 0.00 43.95 4.17
3299 3567 0.798776 CTAAGGTGCGCTTCCTTGTG 59.201 55.000 31.90 24.01 43.95 3.33
3300 3568 0.396811 ACTAAGGTGCGCTTCCTTGT 59.603 50.000 31.90 25.95 43.95 3.16
3301 3569 0.798776 CACTAAGGTGCGCTTCCTTG 59.201 55.000 31.90 25.52 43.95 3.61
3302 3570 3.233355 CACTAAGGTGCGCTTCCTT 57.767 52.632 29.24 29.24 45.72 3.36
3311 3579 4.188462 TGTGAATATTCCGCACTAAGGTG 58.812 43.478 12.90 0.00 45.53 4.00
3312 3580 4.442706 CTGTGAATATTCCGCACTAAGGT 58.557 43.478 12.90 0.00 33.83 3.50
3313 3581 3.809832 CCTGTGAATATTCCGCACTAAGG 59.190 47.826 12.90 5.61 33.83 2.69
3314 3582 3.248602 GCCTGTGAATATTCCGCACTAAG 59.751 47.826 12.90 0.74 33.83 2.18
3315 3583 3.202906 GCCTGTGAATATTCCGCACTAA 58.797 45.455 12.90 0.00 33.83 2.24
3316 3584 2.801699 CGCCTGTGAATATTCCGCACTA 60.802 50.000 12.90 0.00 33.83 2.74
3317 3585 1.668419 GCCTGTGAATATTCCGCACT 58.332 50.000 12.90 0.00 33.83 4.40
3318 3586 0.304705 CGCCTGTGAATATTCCGCAC 59.695 55.000 12.90 5.97 0.00 5.34
3319 3587 1.436195 GCGCCTGTGAATATTCCGCA 61.436 55.000 22.76 16.08 39.70 5.69
3320 3588 1.279840 GCGCCTGTGAATATTCCGC 59.720 57.895 16.51 16.51 0.00 5.54
3321 3589 1.564622 CGCGCCTGTGAATATTCCG 59.435 57.895 12.90 9.42 0.00 4.30
3322 3590 0.531974 TCCGCGCCTGTGAATATTCC 60.532 55.000 12.90 5.17 0.00 3.01
3323 3591 0.582005 GTCCGCGCCTGTGAATATTC 59.418 55.000 8.60 8.60 0.00 1.75
3324 3592 0.107897 TGTCCGCGCCTGTGAATATT 60.108 50.000 0.00 0.00 0.00 1.28
3325 3593 0.107897 TTGTCCGCGCCTGTGAATAT 60.108 50.000 0.00 0.00 0.00 1.28
3326 3594 0.739462 CTTGTCCGCGCCTGTGAATA 60.739 55.000 0.00 0.00 0.00 1.75
3327 3595 2.031919 TTGTCCGCGCCTGTGAAT 59.968 55.556 0.00 0.00 0.00 2.57
3328 3596 2.664851 CTTGTCCGCGCCTGTGAA 60.665 61.111 0.00 0.00 0.00 3.18
3338 3606 1.880340 GATCAGGCGAGCTTGTCCG 60.880 63.158 0.67 0.00 0.00 4.79
3339 3607 1.522580 GGATCAGGCGAGCTTGTCC 60.523 63.158 0.67 4.11 0.00 4.02
3340 3608 1.522580 GGGATCAGGCGAGCTTGTC 60.523 63.158 7.07 0.00 0.00 3.18
3341 3609 2.586792 GGGATCAGGCGAGCTTGT 59.413 61.111 7.07 0.00 0.00 3.16
3342 3610 2.587194 CGGGATCAGGCGAGCTTG 60.587 66.667 0.42 0.42 0.00 4.01
3343 3611 3.854669 CCGGGATCAGGCGAGCTT 61.855 66.667 0.00 0.00 0.00 3.74
3344 3612 4.841617 TCCGGGATCAGGCGAGCT 62.842 66.667 0.00 0.00 0.00 4.09
3345 3613 3.170490 ATTCCGGGATCAGGCGAGC 62.170 63.158 0.00 0.00 0.00 5.03
3346 3614 1.005630 GATTCCGGGATCAGGCGAG 60.006 63.158 18.52 0.00 0.00 5.03
3347 3615 2.856628 CGATTCCGGGATCAGGCGA 61.857 63.158 22.81 0.00 0.00 5.54
3348 3616 2.159819 ATCGATTCCGGGATCAGGCG 62.160 60.000 22.81 9.35 36.24 5.52
3349 3617 0.895530 TATCGATTCCGGGATCAGGC 59.104 55.000 22.81 0.00 36.24 4.85
3350 3618 1.478510 CCTATCGATTCCGGGATCAGG 59.521 57.143 22.81 17.12 36.24 3.86
3351 3619 1.134965 GCCTATCGATTCCGGGATCAG 60.135 57.143 22.81 14.73 36.24 2.90
3352 3620 0.895530 GCCTATCGATTCCGGGATCA 59.104 55.000 22.81 10.15 36.24 2.92
3353 3621 0.179134 CGCCTATCGATTCCGGGATC 60.179 60.000 13.30 13.30 41.67 3.36
3354 3622 0.898789 ACGCCTATCGATTCCGGGAT 60.899 55.000 1.71 0.00 41.67 3.85
3355 3623 1.111116 AACGCCTATCGATTCCGGGA 61.111 55.000 1.71 0.00 41.67 5.14
3356 3624 0.944311 CAACGCCTATCGATTCCGGG 60.944 60.000 1.71 2.68 41.67 5.73
3357 3625 0.944311 CCAACGCCTATCGATTCCGG 60.944 60.000 1.71 0.00 41.67 5.14
3358 3626 0.249322 ACCAACGCCTATCGATTCCG 60.249 55.000 1.71 6.86 41.67 4.30
3359 3627 1.865340 GAACCAACGCCTATCGATTCC 59.135 52.381 1.71 0.00 41.67 3.01
3360 3628 1.521423 CGAACCAACGCCTATCGATTC 59.479 52.381 1.71 0.00 41.67 2.52
3361 3629 1.567504 CGAACCAACGCCTATCGATT 58.432 50.000 1.71 0.00 41.67 3.34
3362 3630 3.267900 CGAACCAACGCCTATCGAT 57.732 52.632 2.16 2.16 41.67 3.59
3363 3631 4.798288 CGAACCAACGCCTATCGA 57.202 55.556 0.00 0.00 41.67 3.59
3371 3639 0.457166 TATCCTGACGCGAACCAACG 60.457 55.000 15.93 1.03 0.00 4.10
3372 3640 1.593006 CATATCCTGACGCGAACCAAC 59.407 52.381 15.93 0.00 0.00 3.77
3373 3641 1.472552 CCATATCCTGACGCGAACCAA 60.473 52.381 15.93 0.00 0.00 3.67
3374 3642 0.104120 CCATATCCTGACGCGAACCA 59.896 55.000 15.93 6.78 0.00 3.67
3375 3643 0.600255 CCCATATCCTGACGCGAACC 60.600 60.000 15.93 1.42 0.00 3.62
3376 3644 0.387929 TCCCATATCCTGACGCGAAC 59.612 55.000 15.93 7.16 0.00 3.95
3377 3645 1.000843 CATCCCATATCCTGACGCGAA 59.999 52.381 15.93 0.00 0.00 4.70
3378 3646 0.603065 CATCCCATATCCTGACGCGA 59.397 55.000 15.93 0.00 0.00 5.87
3379 3647 1.016130 GCATCCCATATCCTGACGCG 61.016 60.000 3.53 3.53 0.00 6.01
3380 3648 0.035317 TGCATCCCATATCCTGACGC 59.965 55.000 0.00 0.00 0.00 5.19
3381 3649 2.353323 CATGCATCCCATATCCTGACG 58.647 52.381 0.00 0.00 31.47 4.35
3382 3650 2.089980 GCATGCATCCCATATCCTGAC 58.910 52.381 14.21 0.00 31.47 3.51
3383 3651 1.339342 CGCATGCATCCCATATCCTGA 60.339 52.381 19.57 0.00 31.47 3.86
3384 3652 1.092348 CGCATGCATCCCATATCCTG 58.908 55.000 19.57 0.00 31.47 3.86
3385 3653 0.034767 CCGCATGCATCCCATATCCT 60.035 55.000 19.57 0.00 31.47 3.24
3386 3654 0.322816 ACCGCATGCATCCCATATCC 60.323 55.000 19.57 0.00 31.47 2.59
3387 3655 2.009774 GTACCGCATGCATCCCATATC 58.990 52.381 19.57 0.00 31.47 1.63
3388 3656 1.630369 AGTACCGCATGCATCCCATAT 59.370 47.619 19.57 0.00 31.47 1.78
3389 3657 1.055849 AGTACCGCATGCATCCCATA 58.944 50.000 19.57 0.00 31.47 2.74
3390 3658 0.183492 AAGTACCGCATGCATCCCAT 59.817 50.000 19.57 0.00 33.39 4.00
3391 3659 0.747644 CAAGTACCGCATGCATCCCA 60.748 55.000 19.57 0.00 0.00 4.37
3392 3660 2.024918 CAAGTACCGCATGCATCCC 58.975 57.895 19.57 2.26 0.00 3.85
3393 3661 1.356624 GCAAGTACCGCATGCATCC 59.643 57.895 19.57 1.86 41.07 3.51
3394 3662 2.097444 TGCAAGTACCGCATGCATC 58.903 52.632 19.57 4.45 45.41 3.91
3395 3663 4.317359 TGCAAGTACCGCATGCAT 57.683 50.000 19.57 7.65 45.41 3.96
3397 3665 2.793946 CCTGCAAGTACCGCATGC 59.206 61.111 7.91 7.91 41.70 4.06
3398 3666 2.793946 GCCTGCAAGTACCGCATG 59.206 61.111 7.93 6.86 39.02 4.06
3399 3667 2.233605 TACGCCTGCAAGTACCGCAT 62.234 55.000 7.93 0.00 39.02 4.73
3400 3668 2.233605 ATACGCCTGCAAGTACCGCA 62.234 55.000 7.31 7.31 37.88 5.69
3401 3669 0.249155 TATACGCCTGCAAGTACCGC 60.249 55.000 0.00 0.00 0.00 5.68
3402 3670 1.484356 GTATACGCCTGCAAGTACCG 58.516 55.000 0.00 0.00 0.00 4.02
3403 3671 1.484356 CGTATACGCCTGCAAGTACC 58.516 55.000 13.08 0.00 0.00 3.34
3404 3672 1.202336 ACCGTATACGCCTGCAAGTAC 60.202 52.381 19.86 0.00 38.18 2.73
3405 3673 1.105457 ACCGTATACGCCTGCAAGTA 58.895 50.000 19.86 0.00 38.18 2.24
3406 3674 0.459585 CACCGTATACGCCTGCAAGT 60.460 55.000 19.86 7.46 38.18 3.16
3407 3675 0.459585 ACACCGTATACGCCTGCAAG 60.460 55.000 19.86 6.81 38.18 4.01
3408 3676 0.458889 GACACCGTATACGCCTGCAA 60.459 55.000 19.86 0.00 38.18 4.08
3409 3677 1.140161 GACACCGTATACGCCTGCA 59.860 57.895 19.86 0.00 38.18 4.41
3410 3678 1.590792 GGACACCGTATACGCCTGC 60.591 63.158 19.86 11.67 38.18 4.85
3411 3679 1.311859 TAGGACACCGTATACGCCTG 58.688 55.000 24.09 20.01 38.18 4.85
3412 3680 2.283145 ATAGGACACCGTATACGCCT 57.717 50.000 19.86 20.53 38.18 5.52
3413 3681 3.375782 AAATAGGACACCGTATACGCC 57.624 47.619 19.86 14.72 38.18 5.68
3414 3682 5.922544 ACATTAAATAGGACACCGTATACGC 59.077 40.000 19.86 5.93 38.18 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.