Multiple sequence alignment - TraesCS3B01G454700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G454700 chr3B 100.000 3191 0 0 1 3191 696334499 696331309 0.000000e+00 5893
1 TraesCS3B01G454700 chr3B 87.383 214 25 2 107 319 670366625 670366837 8.840000e-61 244
2 TraesCS3B01G454700 chr3D 92.366 2895 132 38 316 3191 526980660 526977836 0.000000e+00 4039
3 TraesCS3B01G454700 chr3A 89.442 2851 169 52 395 3191 661479237 661476465 0.000000e+00 3476
4 TraesCS3B01G454700 chr4B 95.652 322 13 1 1 322 596777536 596777216 1.700000e-142 516
5 TraesCS3B01G454700 chr7A 95.312 320 15 0 2 321 615783311 615783630 2.840000e-140 508
6 TraesCS3B01G454700 chr7A 95.584 317 14 0 2 318 619501454 619501770 2.840000e-140 508
7 TraesCS3B01G454700 chr2D 94.937 316 13 1 1 316 222852414 222852726 2.860000e-135 492
8 TraesCS3B01G454700 chr2D 89.773 176 11 2 3020 3191 317594471 317594299 5.360000e-53 219
9 TraesCS3B01G454700 chrUn 94.025 318 2 1 1 318 136420250 136420550 1.730000e-127 466
10 TraesCS3B01G454700 chrUn 87.324 213 25 2 107 318 382781570 382781781 3.180000e-60 243
11 TraesCS3B01G454700 chrUn 87.037 216 26 2 107 321 389187308 389187094 3.180000e-60 243
12 TraesCS3B01G454700 chrUn 87.324 213 25 2 107 318 389212883 389213094 3.180000e-60 243
13 TraesCS3B01G454700 chr7D 88.931 262 23 3 1376 1637 422572983 422573238 5.140000e-83 318
14 TraesCS3B01G454700 chr7D 93.617 94 6 0 1236 1329 422572347 422572440 1.190000e-29 141
15 TraesCS3B01G454700 chr5D 88.839 224 19 2 1414 1637 407765018 407765235 1.460000e-68 270
16 TraesCS3B01G454700 chr5D 94.578 166 9 0 1236 1401 407764371 407764536 1.140000e-64 257
17 TraesCS3B01G454700 chr5D 93.913 115 7 0 1236 1350 13767067 13766953 1.180000e-39 174
18 TraesCS3B01G454700 chr2A 89.773 176 11 3 3020 3191 416917936 416918108 5.360000e-53 219
19 TraesCS3B01G454700 chr2B 85.268 224 18 9 2974 3191 385200939 385200725 1.930000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G454700 chr3B 696331309 696334499 3190 True 5893.0 5893 100.0000 1 3191 1 chr3B.!!$R1 3190
1 TraesCS3B01G454700 chr3D 526977836 526980660 2824 True 4039.0 4039 92.3660 316 3191 1 chr3D.!!$R1 2875
2 TraesCS3B01G454700 chr3A 661476465 661479237 2772 True 3476.0 3476 89.4420 395 3191 1 chr3A.!!$R1 2796
3 TraesCS3B01G454700 chr7D 422572347 422573238 891 False 229.5 318 91.2740 1236 1637 2 chr7D.!!$F1 401
4 TraesCS3B01G454700 chr5D 407764371 407765235 864 False 263.5 270 91.7085 1236 1637 2 chr5D.!!$F1 401

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 682 0.10741 CGTATAGCCAAGCCAACCCA 60.107 55.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 3423 0.400594 AGCTAGCCCGTTGTTCCTTT 59.599 50.0 12.13 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.611796 CGTGAGATCAATCCTGAAAACAA 57.388 39.130 0.00 0.00 34.49 2.83
23 24 6.000891 CGTGAGATCAATCCTGAAAACAAA 57.999 37.500 0.00 0.00 34.49 2.83
24 25 5.853282 CGTGAGATCAATCCTGAAAACAAAC 59.147 40.000 0.00 0.00 34.49 2.93
25 26 6.293626 CGTGAGATCAATCCTGAAAACAAACT 60.294 38.462 0.00 0.00 34.49 2.66
26 27 7.080724 GTGAGATCAATCCTGAAAACAAACTC 58.919 38.462 0.00 0.00 34.49 3.01
27 28 6.772233 TGAGATCAATCCTGAAAACAAACTCA 59.228 34.615 0.00 0.00 34.49 3.41
28 29 7.040892 TGAGATCAATCCTGAAAACAAACTCAG 60.041 37.037 0.00 0.00 39.06 3.35
29 30 5.186996 TCAATCCTGAAAACAAACTCAGC 57.813 39.130 0.00 0.00 38.19 4.26
30 31 4.889409 TCAATCCTGAAAACAAACTCAGCT 59.111 37.500 0.00 0.00 38.19 4.24
31 32 5.009010 TCAATCCTGAAAACAAACTCAGCTC 59.991 40.000 0.00 0.00 38.19 4.09
32 33 3.884895 TCCTGAAAACAAACTCAGCTCA 58.115 40.909 0.00 0.00 38.19 4.26
33 34 3.627577 TCCTGAAAACAAACTCAGCTCAC 59.372 43.478 0.00 0.00 38.19 3.51
34 35 3.378112 CCTGAAAACAAACTCAGCTCACA 59.622 43.478 0.00 0.00 38.19 3.58
35 36 4.142403 CCTGAAAACAAACTCAGCTCACAA 60.142 41.667 0.00 0.00 38.19 3.33
36 37 5.384063 TGAAAACAAACTCAGCTCACAAA 57.616 34.783 0.00 0.00 0.00 2.83
37 38 5.964758 TGAAAACAAACTCAGCTCACAAAT 58.035 33.333 0.00 0.00 0.00 2.32
38 39 7.094508 TGAAAACAAACTCAGCTCACAAATA 57.905 32.000 0.00 0.00 0.00 1.40
39 40 7.195646 TGAAAACAAACTCAGCTCACAAATAG 58.804 34.615 0.00 0.00 0.00 1.73
40 41 4.756084 ACAAACTCAGCTCACAAATAGC 57.244 40.909 0.00 0.00 40.40 2.97
41 42 4.136796 ACAAACTCAGCTCACAAATAGCA 58.863 39.130 0.00 0.00 42.62 3.49
42 43 4.580167 ACAAACTCAGCTCACAAATAGCAA 59.420 37.500 0.00 0.00 42.62 3.91
43 44 5.242393 ACAAACTCAGCTCACAAATAGCAAT 59.758 36.000 0.00 0.00 42.62 3.56
44 45 6.430925 ACAAACTCAGCTCACAAATAGCAATA 59.569 34.615 0.00 0.00 42.62 1.90
45 46 7.040478 ACAAACTCAGCTCACAAATAGCAATAA 60.040 33.333 0.00 0.00 42.62 1.40
46 47 7.636150 AACTCAGCTCACAAATAGCAATAAT 57.364 32.000 0.00 0.00 42.62 1.28
47 48 7.636150 ACTCAGCTCACAAATAGCAATAATT 57.364 32.000 0.00 0.00 42.62 1.40
48 49 7.478322 ACTCAGCTCACAAATAGCAATAATTG 58.522 34.615 0.00 0.00 42.62 2.32
49 50 7.121759 ACTCAGCTCACAAATAGCAATAATTGT 59.878 33.333 0.00 0.00 42.62 2.71
50 51 8.504812 TCAGCTCACAAATAGCAATAATTGTA 57.495 30.769 0.00 0.00 42.62 2.41
51 52 9.123902 TCAGCTCACAAATAGCAATAATTGTAT 57.876 29.630 0.00 0.00 42.62 2.29
52 53 9.177304 CAGCTCACAAATAGCAATAATTGTATG 57.823 33.333 0.00 0.00 42.62 2.39
53 54 8.355169 AGCTCACAAATAGCAATAATTGTATGG 58.645 33.333 0.00 0.00 42.62 2.74
54 55 8.137437 GCTCACAAATAGCAATAATTGTATGGT 58.863 33.333 0.00 0.00 39.83 3.55
55 56 9.454585 CTCACAAATAGCAATAATTGTATGGTG 57.545 33.333 0.00 0.00 34.45 4.17
56 57 8.412456 TCACAAATAGCAATAATTGTATGGTGG 58.588 33.333 0.00 0.00 34.45 4.61
57 58 7.652909 CACAAATAGCAATAATTGTATGGTGGG 59.347 37.037 0.00 0.00 34.45 4.61
58 59 5.982890 ATAGCAATAATTGTATGGTGGGC 57.017 39.130 0.00 0.00 0.00 5.36
59 60 2.622942 AGCAATAATTGTATGGTGGGCG 59.377 45.455 0.00 0.00 0.00 6.13
60 61 2.621055 GCAATAATTGTATGGTGGGCGA 59.379 45.455 0.00 0.00 0.00 5.54
61 62 3.255642 GCAATAATTGTATGGTGGGCGAT 59.744 43.478 0.00 0.00 0.00 4.58
62 63 4.261994 GCAATAATTGTATGGTGGGCGATT 60.262 41.667 0.00 0.00 0.00 3.34
63 64 5.460646 CAATAATTGTATGGTGGGCGATTC 58.539 41.667 0.00 0.00 0.00 2.52
64 65 3.297134 AATTGTATGGTGGGCGATTCT 57.703 42.857 0.00 0.00 0.00 2.40
65 66 2.036958 TTGTATGGTGGGCGATTCTG 57.963 50.000 0.00 0.00 0.00 3.02
66 67 0.463654 TGTATGGTGGGCGATTCTGC 60.464 55.000 0.00 0.00 0.00 4.26
74 75 4.547859 GCGATTCTGCCATGACCT 57.452 55.556 0.00 0.00 0.00 3.85
75 76 3.686622 GCGATTCTGCCATGACCTA 57.313 52.632 0.00 0.00 0.00 3.08
76 77 2.175878 GCGATTCTGCCATGACCTAT 57.824 50.000 0.00 0.00 0.00 2.57
77 78 2.498167 GCGATTCTGCCATGACCTATT 58.502 47.619 0.00 0.00 0.00 1.73
78 79 2.880890 GCGATTCTGCCATGACCTATTT 59.119 45.455 0.00 0.00 0.00 1.40
79 80 3.304257 GCGATTCTGCCATGACCTATTTG 60.304 47.826 0.00 0.00 0.00 2.32
80 81 3.251729 CGATTCTGCCATGACCTATTTGG 59.748 47.826 0.00 0.00 42.93 3.28
103 104 9.661563 TTGGTTATAAGTTATTGATGTTCGACT 57.338 29.630 0.00 0.00 0.00 4.18
104 105 9.661563 TGGTTATAAGTTATTGATGTTCGACTT 57.338 29.630 0.00 0.00 0.00 3.01
105 106 9.916397 GGTTATAAGTTATTGATGTTCGACTTG 57.084 33.333 0.00 0.00 0.00 3.16
109 110 6.648725 AGTTATTGATGTTCGACTTGTAGC 57.351 37.500 0.00 0.00 0.00 3.58
110 111 6.398918 AGTTATTGATGTTCGACTTGTAGCT 58.601 36.000 0.00 0.00 0.00 3.32
111 112 6.311445 AGTTATTGATGTTCGACTTGTAGCTG 59.689 38.462 0.00 0.00 0.00 4.24
112 113 3.660501 TGATGTTCGACTTGTAGCTGT 57.339 42.857 0.00 0.00 0.00 4.40
113 114 3.317150 TGATGTTCGACTTGTAGCTGTG 58.683 45.455 0.00 0.00 0.00 3.66
114 115 3.005367 TGATGTTCGACTTGTAGCTGTGA 59.995 43.478 0.00 0.00 0.00 3.58
115 116 3.013276 TGTTCGACTTGTAGCTGTGAG 57.987 47.619 0.00 0.00 0.00 3.51
116 117 1.721926 GTTCGACTTGTAGCTGTGAGC 59.278 52.381 0.00 0.00 42.84 4.26
117 118 0.958822 TCGACTTGTAGCTGTGAGCA 59.041 50.000 0.00 0.00 45.56 4.26
118 119 1.063806 CGACTTGTAGCTGTGAGCAC 58.936 55.000 0.00 0.00 45.56 4.40
119 120 1.336332 CGACTTGTAGCTGTGAGCACT 60.336 52.381 0.00 0.00 45.56 4.40
120 121 2.760374 GACTTGTAGCTGTGAGCACTT 58.240 47.619 0.00 0.00 45.56 3.16
121 122 2.478134 GACTTGTAGCTGTGAGCACTTG 59.522 50.000 0.00 0.00 45.56 3.16
122 123 2.158900 ACTTGTAGCTGTGAGCACTTGT 60.159 45.455 0.00 0.00 45.56 3.16
123 124 1.869774 TGTAGCTGTGAGCACTTGTG 58.130 50.000 0.00 0.00 45.56 3.33
124 125 1.138859 TGTAGCTGTGAGCACTTGTGT 59.861 47.619 0.00 0.00 45.56 3.72
125 126 2.213499 GTAGCTGTGAGCACTTGTGTT 58.787 47.619 0.00 0.00 45.56 3.32
126 127 1.019673 AGCTGTGAGCACTTGTGTTG 58.980 50.000 1.99 0.00 45.56 3.33
127 128 0.734889 GCTGTGAGCACTTGTGTTGT 59.265 50.000 1.99 0.00 41.89 3.32
128 129 1.133025 GCTGTGAGCACTTGTGTTGTT 59.867 47.619 1.99 0.00 41.89 2.83
129 130 2.789208 CTGTGAGCACTTGTGTTGTTG 58.211 47.619 1.99 0.00 0.00 3.33
130 131 1.135431 TGTGAGCACTTGTGTTGTTGC 60.135 47.619 1.99 0.00 0.00 4.17
131 132 1.135431 GTGAGCACTTGTGTTGTTGCA 60.135 47.619 2.61 0.00 0.00 4.08
132 133 1.543358 TGAGCACTTGTGTTGTTGCAA 59.457 42.857 0.00 0.00 0.00 4.08
133 134 2.029560 TGAGCACTTGTGTTGTTGCAAA 60.030 40.909 0.00 0.00 0.00 3.68
134 135 3.189285 GAGCACTTGTGTTGTTGCAAAT 58.811 40.909 0.00 0.00 0.00 2.32
135 136 3.598299 AGCACTTGTGTTGTTGCAAATT 58.402 36.364 0.00 0.00 0.00 1.82
136 137 3.371591 AGCACTTGTGTTGTTGCAAATTG 59.628 39.130 0.00 0.00 0.00 2.32
137 138 3.124976 GCACTTGTGTTGTTGCAAATTGT 59.875 39.130 0.00 0.00 0.00 2.71
138 139 4.328440 GCACTTGTGTTGTTGCAAATTGTA 59.672 37.500 0.00 0.00 0.00 2.41
139 140 5.500610 GCACTTGTGTTGTTGCAAATTGTAG 60.501 40.000 0.00 0.00 0.00 2.74
140 141 5.576384 CACTTGTGTTGTTGCAAATTGTAGT 59.424 36.000 0.00 0.00 0.00 2.73
141 142 6.090628 CACTTGTGTTGTTGCAAATTGTAGTT 59.909 34.615 0.00 0.00 0.00 2.24
142 143 6.090628 ACTTGTGTTGTTGCAAATTGTAGTTG 59.909 34.615 0.00 0.00 0.00 3.16
143 144 5.714047 TGTGTTGTTGCAAATTGTAGTTGA 58.286 33.333 0.00 0.00 0.00 3.18
144 145 5.804473 TGTGTTGTTGCAAATTGTAGTTGAG 59.196 36.000 0.00 0.00 0.00 3.02
145 146 4.803088 TGTTGTTGCAAATTGTAGTTGAGC 59.197 37.500 0.00 0.00 0.00 4.26
146 147 4.916983 TGTTGCAAATTGTAGTTGAGCT 57.083 36.364 0.00 0.00 0.00 4.09
147 148 5.261209 TGTTGCAAATTGTAGTTGAGCTT 57.739 34.783 0.00 0.00 0.00 3.74
148 149 5.659463 TGTTGCAAATTGTAGTTGAGCTTT 58.341 33.333 0.00 0.00 0.00 3.51
149 150 6.105333 TGTTGCAAATTGTAGTTGAGCTTTT 58.895 32.000 0.00 0.00 0.00 2.27
150 151 6.035866 TGTTGCAAATTGTAGTTGAGCTTTTG 59.964 34.615 0.00 0.00 0.00 2.44
151 152 4.507388 TGCAAATTGTAGTTGAGCTTTTGC 59.493 37.500 16.12 16.12 44.59 3.68
167 168 4.917415 GCTTTTGCTTATGTTGTACAGTGG 59.083 41.667 0.00 0.00 43.35 4.00
168 169 5.446143 TTTTGCTTATGTTGTACAGTGGG 57.554 39.130 0.00 0.00 0.00 4.61
169 170 4.359434 TTGCTTATGTTGTACAGTGGGA 57.641 40.909 0.00 0.00 0.00 4.37
170 171 4.568072 TGCTTATGTTGTACAGTGGGAT 57.432 40.909 0.00 0.00 0.00 3.85
171 172 5.685520 TGCTTATGTTGTACAGTGGGATA 57.314 39.130 0.00 0.00 0.00 2.59
172 173 5.424757 TGCTTATGTTGTACAGTGGGATAC 58.575 41.667 0.00 0.00 0.00 2.24
173 174 5.046231 TGCTTATGTTGTACAGTGGGATACA 60.046 40.000 0.00 0.00 39.74 2.29
174 175 6.055588 GCTTATGTTGTACAGTGGGATACAT 58.944 40.000 10.88 10.88 39.74 2.29
175 176 6.542370 GCTTATGTTGTACAGTGGGATACATT 59.458 38.462 11.25 0.00 39.74 2.71
176 177 7.067008 GCTTATGTTGTACAGTGGGATACATTT 59.933 37.037 11.25 0.00 39.74 2.32
177 178 8.871629 TTATGTTGTACAGTGGGATACATTTT 57.128 30.769 11.25 0.00 39.74 1.82
178 179 6.811253 TGTTGTACAGTGGGATACATTTTC 57.189 37.500 0.00 0.00 39.74 2.29
179 180 5.708230 TGTTGTACAGTGGGATACATTTTCC 59.292 40.000 0.00 0.00 39.74 3.13
180 181 5.506730 TGTACAGTGGGATACATTTTCCA 57.493 39.130 0.00 0.00 34.77 3.53
181 182 5.882040 TGTACAGTGGGATACATTTTCCAA 58.118 37.500 0.00 0.00 34.77 3.53
182 183 6.307776 TGTACAGTGGGATACATTTTCCAAA 58.692 36.000 0.00 0.00 34.77 3.28
183 184 5.722021 ACAGTGGGATACATTTTCCAAAC 57.278 39.130 0.00 0.00 34.77 2.93
184 185 4.526650 ACAGTGGGATACATTTTCCAAACC 59.473 41.667 0.00 0.00 34.77 3.27
185 186 4.772100 CAGTGGGATACATTTTCCAAACCT 59.228 41.667 0.00 0.00 34.77 3.50
186 187 5.949354 CAGTGGGATACATTTTCCAAACCTA 59.051 40.000 0.00 0.00 34.77 3.08
187 188 6.607198 CAGTGGGATACATTTTCCAAACCTAT 59.393 38.462 0.00 0.00 34.77 2.57
188 189 7.777910 CAGTGGGATACATTTTCCAAACCTATA 59.222 37.037 0.00 0.00 34.77 1.31
189 190 8.511126 AGTGGGATACATTTTCCAAACCTATAT 58.489 33.333 0.00 0.00 34.77 0.86
190 191 9.802039 GTGGGATACATTTTCCAAACCTATATA 57.198 33.333 0.00 0.00 34.77 0.86
202 203 9.793259 TTCCAAACCTATATATGGATGAGAAAC 57.207 33.333 4.07 0.00 41.36 2.78
203 204 8.944138 TCCAAACCTATATATGGATGAGAAACA 58.056 33.333 0.00 0.00 37.05 2.83
204 205 9.573166 CCAAACCTATATATGGATGAGAAACAA 57.427 33.333 0.00 0.00 34.82 2.83
206 207 9.799106 AAACCTATATATGGATGAGAAACAAGG 57.201 33.333 0.00 0.00 0.00 3.61
207 208 7.922382 ACCTATATATGGATGAGAAACAAGGG 58.078 38.462 0.00 0.00 0.00 3.95
208 209 7.037297 ACCTATATATGGATGAGAAACAAGGGG 60.037 40.741 0.00 0.00 0.00 4.79
209 210 6.786843 ATATATGGATGAGAAACAAGGGGT 57.213 37.500 0.00 0.00 0.00 4.95
210 211 2.879103 TGGATGAGAAACAAGGGGTC 57.121 50.000 0.00 0.00 0.00 4.46
211 212 1.354368 TGGATGAGAAACAAGGGGTCC 59.646 52.381 0.00 0.00 0.00 4.46
212 213 1.354368 GGATGAGAAACAAGGGGTCCA 59.646 52.381 0.00 0.00 0.00 4.02
213 214 2.225017 GGATGAGAAACAAGGGGTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
214 215 3.496331 GATGAGAAACAAGGGGTCCAAA 58.504 45.455 0.00 0.00 0.00 3.28
215 216 3.390175 TGAGAAACAAGGGGTCCAAAA 57.610 42.857 0.00 0.00 0.00 2.44
216 217 3.714144 TGAGAAACAAGGGGTCCAAAAA 58.286 40.909 0.00 0.00 0.00 1.94
217 218 4.294347 TGAGAAACAAGGGGTCCAAAAAT 58.706 39.130 0.00 0.00 0.00 1.82
218 219 4.719273 TGAGAAACAAGGGGTCCAAAAATT 59.281 37.500 0.00 0.00 0.00 1.82
219 220 5.034852 AGAAACAAGGGGTCCAAAAATTG 57.965 39.130 0.00 0.00 0.00 2.32
253 254 8.721133 ACTTTCTTTTATGTAAATTGGACCCT 57.279 30.769 0.00 0.00 0.00 4.34
254 255 8.803235 ACTTTCTTTTATGTAAATTGGACCCTC 58.197 33.333 0.00 0.00 0.00 4.30
255 256 8.950007 TTTCTTTTATGTAAATTGGACCCTCT 57.050 30.769 0.00 0.00 0.00 3.69
256 257 7.938140 TCTTTTATGTAAATTGGACCCTCTG 57.062 36.000 0.00 0.00 0.00 3.35
257 258 6.377146 TCTTTTATGTAAATTGGACCCTCTGC 59.623 38.462 0.00 0.00 0.00 4.26
258 259 5.450818 TTATGTAAATTGGACCCTCTGCT 57.549 39.130 0.00 0.00 0.00 4.24
259 260 6.569127 TTATGTAAATTGGACCCTCTGCTA 57.431 37.500 0.00 0.00 0.00 3.49
260 261 5.653255 ATGTAAATTGGACCCTCTGCTAT 57.347 39.130 0.00 0.00 0.00 2.97
261 262 5.036117 TGTAAATTGGACCCTCTGCTATC 57.964 43.478 0.00 0.00 0.00 2.08
262 263 4.721776 TGTAAATTGGACCCTCTGCTATCT 59.278 41.667 0.00 0.00 0.00 1.98
263 264 4.870021 AAATTGGACCCTCTGCTATCTT 57.130 40.909 0.00 0.00 0.00 2.40
264 265 4.870021 AATTGGACCCTCTGCTATCTTT 57.130 40.909 0.00 0.00 0.00 2.52
265 266 4.870021 ATTGGACCCTCTGCTATCTTTT 57.130 40.909 0.00 0.00 0.00 2.27
266 267 5.975988 ATTGGACCCTCTGCTATCTTTTA 57.024 39.130 0.00 0.00 0.00 1.52
267 268 5.359194 TTGGACCCTCTGCTATCTTTTAG 57.641 43.478 0.00 0.00 0.00 1.85
268 269 4.362677 TGGACCCTCTGCTATCTTTTAGT 58.637 43.478 0.00 0.00 0.00 2.24
269 270 4.783227 TGGACCCTCTGCTATCTTTTAGTT 59.217 41.667 0.00 0.00 0.00 2.24
270 271 5.104900 TGGACCCTCTGCTATCTTTTAGTTC 60.105 44.000 0.00 0.00 0.00 3.01
271 272 5.360649 ACCCTCTGCTATCTTTTAGTTCC 57.639 43.478 0.00 0.00 0.00 3.62
272 273 4.783227 ACCCTCTGCTATCTTTTAGTTCCA 59.217 41.667 0.00 0.00 0.00 3.53
273 274 5.430089 ACCCTCTGCTATCTTTTAGTTCCAT 59.570 40.000 0.00 0.00 0.00 3.41
274 275 5.994668 CCCTCTGCTATCTTTTAGTTCCATC 59.005 44.000 0.00 0.00 0.00 3.51
275 276 6.183361 CCCTCTGCTATCTTTTAGTTCCATCT 60.183 42.308 0.00 0.00 0.00 2.90
276 277 7.278875 CCTCTGCTATCTTTTAGTTCCATCTT 58.721 38.462 0.00 0.00 0.00 2.40
277 278 8.424918 CCTCTGCTATCTTTTAGTTCCATCTTA 58.575 37.037 0.00 0.00 0.00 2.10
278 279 9.823647 CTCTGCTATCTTTTAGTTCCATCTTAA 57.176 33.333 0.00 0.00 0.00 1.85
279 280 9.601217 TCTGCTATCTTTTAGTTCCATCTTAAC 57.399 33.333 0.00 0.00 0.00 2.01
280 281 9.606631 CTGCTATCTTTTAGTTCCATCTTAACT 57.393 33.333 0.00 0.00 40.25 2.24
281 282 9.383519 TGCTATCTTTTAGTTCCATCTTAACTG 57.616 33.333 0.00 0.00 37.71 3.16
282 283 8.831550 GCTATCTTTTAGTTCCATCTTAACTGG 58.168 37.037 0.00 0.00 37.71 4.00
283 284 9.892130 CTATCTTTTAGTTCCATCTTAACTGGT 57.108 33.333 0.00 0.00 37.71 4.00
286 287 9.498176 TCTTTTAGTTCCATCTTAACTGGTTAC 57.502 33.333 0.00 1.39 37.71 2.50
287 288 9.503399 CTTTTAGTTCCATCTTAACTGGTTACT 57.497 33.333 0.00 11.21 37.71 2.24
289 290 9.933723 TTTAGTTCCATCTTAACTGGTTACTAC 57.066 33.333 0.00 0.00 37.71 2.73
290 291 6.628185 AGTTCCATCTTAACTGGTTACTACG 58.372 40.000 0.00 0.00 35.87 3.51
291 292 6.210185 AGTTCCATCTTAACTGGTTACTACGT 59.790 38.462 0.00 0.00 35.87 3.57
292 293 5.957798 TCCATCTTAACTGGTTACTACGTG 58.042 41.667 0.00 0.00 35.19 4.49
293 294 4.565564 CCATCTTAACTGGTTACTACGTGC 59.434 45.833 0.00 0.00 0.00 5.34
294 295 4.852134 TCTTAACTGGTTACTACGTGCA 57.148 40.909 0.00 0.00 0.00 4.57
295 296 5.199024 TCTTAACTGGTTACTACGTGCAA 57.801 39.130 0.00 0.00 0.00 4.08
296 297 5.599732 TCTTAACTGGTTACTACGTGCAAA 58.400 37.500 0.00 0.00 0.00 3.68
297 298 5.693104 TCTTAACTGGTTACTACGTGCAAAG 59.307 40.000 0.00 0.00 0.00 2.77
298 299 2.140717 ACTGGTTACTACGTGCAAAGC 58.859 47.619 0.00 0.00 0.00 3.51
299 300 2.139917 CTGGTTACTACGTGCAAAGCA 58.860 47.619 0.00 4.37 35.60 3.91
308 309 3.195683 TGCAAAGCACGTGCAGTT 58.804 50.000 39.21 29.09 46.76 3.16
309 310 1.510383 TGCAAAGCACGTGCAGTTT 59.490 47.368 39.21 28.45 46.76 2.66
310 311 0.735471 TGCAAAGCACGTGCAGTTTA 59.265 45.000 39.21 20.95 46.76 2.01
311 312 1.120437 GCAAAGCACGTGCAGTTTAC 58.880 50.000 39.21 23.12 45.16 2.01
312 313 1.268539 GCAAAGCACGTGCAGTTTACT 60.269 47.619 39.21 16.76 45.16 2.24
313 314 2.032377 GCAAAGCACGTGCAGTTTACTA 60.032 45.455 39.21 0.00 45.16 1.82
314 315 3.799035 CAAAGCACGTGCAGTTTACTAG 58.201 45.455 39.21 17.12 45.16 2.57
321 322 5.107220 GCACGTGCAGTTTACTAGTATTTGT 60.107 40.000 34.52 0.00 41.59 2.83
325 326 7.011669 ACGTGCAGTTTACTAGTATTTGTTGTT 59.988 33.333 2.79 0.00 0.00 2.83
347 348 7.362662 TGTTGATCAAACTAGACTTGAATTGC 58.637 34.615 10.35 0.00 39.70 3.56
378 379 6.451393 CGGAGGTCATCTTCCTTTTATAGAG 58.549 44.000 0.00 0.00 37.64 2.43
431 432 2.166050 CGTGGATGGAATTGATTTGCCA 59.834 45.455 0.00 0.00 34.45 4.92
474 475 0.616371 TGGGACCCACCAAATCGTAG 59.384 55.000 9.95 0.00 41.20 3.51
540 541 0.754472 ACGGGAGAAGTTTGTTCGGA 59.246 50.000 0.00 0.00 0.00 4.55
548 549 0.600255 AGTTTGTTCGGAGCACGGAG 60.600 55.000 0.00 0.00 44.45 4.63
551 552 4.452733 GTTCGGAGCACGGAGGGG 62.453 72.222 0.96 0.00 44.45 4.79
564 597 1.717032 GGAGGGGCAAAAAGGAAAGT 58.283 50.000 0.00 0.00 0.00 2.66
565 598 1.344438 GGAGGGGCAAAAAGGAAAGTG 59.656 52.381 0.00 0.00 0.00 3.16
649 682 0.107410 CGTATAGCCAAGCCAACCCA 60.107 55.000 0.00 0.00 0.00 4.51
775 808 7.303634 ACTAAAAATGAATTAGTGCGTCGAT 57.696 32.000 0.00 0.00 40.97 3.59
866 905 3.289834 CGGTGCAAACAGGCTGCT 61.290 61.111 15.89 0.00 40.59 4.24
897 936 2.677971 GCCCGCGCCTATACATATG 58.322 57.895 0.00 0.00 0.00 1.78
937 976 1.001597 GGTCGGCTACAGTAATCTCGG 60.002 57.143 0.00 0.00 0.00 4.63
978 1017 0.322008 GCTAGGTTTCTGCAGCCACT 60.322 55.000 9.47 7.04 0.00 4.00
1506 2510 4.402528 CCGTGGATTGCCGGTGGA 62.403 66.667 1.90 0.00 39.38 4.02
1632 2636 3.740128 GACGATGCAGCCCGATGGT 62.740 63.158 10.77 0.00 0.00 3.55
1673 2677 3.264897 GATGCAGGCCGCGTACAG 61.265 66.667 13.15 0.00 46.97 2.74
1722 2726 0.548031 ACCAGGCGATGATGATGGTT 59.452 50.000 0.00 0.00 41.44 3.67
1757 2761 2.019951 ACGACGCCATGAACACGAC 61.020 57.895 0.00 0.00 0.00 4.34
1884 2891 4.382320 GGCGGCAACTACCACGGA 62.382 66.667 3.07 0.00 0.00 4.69
1954 2961 4.916293 GCGCCATGCCCGATCTGA 62.916 66.667 0.00 0.00 37.76 3.27
2210 3227 0.669077 CCCTCGATCGGTACTCCAAG 59.331 60.000 16.41 2.07 0.00 3.61
2240 3260 6.432162 TCACTTCCAAATAGTACACGTCTAGT 59.568 38.462 0.00 0.00 0.00 2.57
2241 3261 6.746364 CACTTCCAAATAGTACACGTCTAGTC 59.254 42.308 0.00 0.00 0.00 2.59
2242 3262 6.658391 ACTTCCAAATAGTACACGTCTAGTCT 59.342 38.462 0.00 0.00 0.00 3.24
2243 3263 7.826252 ACTTCCAAATAGTACACGTCTAGTCTA 59.174 37.037 0.00 0.00 0.00 2.59
2318 3338 1.062587 CGTGATCAGTCCGGCAATTTC 59.937 52.381 0.00 0.00 0.00 2.17
2364 3384 4.740822 GATGCTTGCCACCCCCGT 62.741 66.667 0.00 0.00 0.00 5.28
2408 3428 4.697756 CGGCCGACCAGCAAAGGA 62.698 66.667 24.07 0.00 34.57 3.36
2413 3433 0.310854 CCGACCAGCAAAGGAACAAC 59.689 55.000 0.00 0.00 0.00 3.32
2418 3438 1.152756 AGCAAAGGAACAACGGGCT 60.153 52.632 0.00 0.00 0.00 5.19
2440 3460 4.922471 AGCTATTAGGAGAAGGTCGTTC 57.078 45.455 0.00 0.00 35.08 3.95
2446 3466 0.313043 GGAGAAGGTCGTTCGTGTCA 59.687 55.000 0.00 0.00 40.49 3.58
2451 3471 0.742505 AGGTCGTTCGTGTCAGTCAA 59.257 50.000 0.00 0.00 0.00 3.18
2467 3487 0.604780 TCAACCAGCAGCTCAGCTTC 60.605 55.000 0.00 0.00 43.70 3.86
2510 3534 0.393537 CCTCACTGCTTGGATGACCC 60.394 60.000 0.00 0.00 34.81 4.46
2549 3586 6.715718 CAGGCATATACTGTAGTGGTAGTAGT 59.284 42.308 0.00 0.00 33.32 2.73
2550 3587 7.881751 CAGGCATATACTGTAGTGGTAGTAGTA 59.118 40.741 0.00 0.00 33.32 1.82
2551 3588 8.102047 AGGCATATACTGTAGTGGTAGTAGTAG 58.898 40.741 0.00 0.00 33.32 2.57
2552 3589 7.882271 GGCATATACTGTAGTGGTAGTAGTAGT 59.118 40.741 0.00 0.00 33.32 2.73
2553 3590 9.935241 GCATATACTGTAGTGGTAGTAGTAGTA 57.065 37.037 0.00 0.00 33.32 1.82
2618 3655 3.211045 TCCGGCAATTTTCTAGGTATGC 58.789 45.455 0.00 0.00 0.00 3.14
2621 3658 4.261197 CCGGCAATTTTCTAGGTATGCTTC 60.261 45.833 0.00 0.00 34.37 3.86
2636 3673 5.758296 GGTATGCTTCGAATAAATGGTCTCA 59.242 40.000 0.00 0.00 0.00 3.27
2797 3835 3.485463 ACCGAGTCAGTTTCAATGGAA 57.515 42.857 0.00 0.00 0.00 3.53
2804 3842 3.882888 GTCAGTTTCAATGGAACTGTGGA 59.117 43.478 27.91 11.37 31.35 4.02
2949 3995 2.760650 AGAGACTGACATAATCCGTGCA 59.239 45.455 0.00 0.00 0.00 4.57
2962 4008 0.596083 CCGTGCATCATCTCGTCTCC 60.596 60.000 0.00 0.00 0.00 3.71
2997 4043 2.176364 AGTTTGGCATGGGAGCTATCAT 59.824 45.455 0.00 0.00 34.17 2.45
2999 4045 0.402887 TGGCATGGGAGCTATCATGG 59.597 55.000 22.44 10.35 40.59 3.66
3034 4082 6.556116 AGTTAGAGTTACTTACCCCTGAAACA 59.444 38.462 0.00 0.00 0.00 2.83
3038 4086 5.948842 AGTTACTTACCCCTGAAACACAAT 58.051 37.500 0.00 0.00 0.00 2.71
3039 4087 5.768164 AGTTACTTACCCCTGAAACACAATG 59.232 40.000 0.00 0.00 0.00 2.82
3134 4186 8.367911 TCTATCTGCAGGTTTTATTATCACGAT 58.632 33.333 15.13 0.00 0.00 3.73
3137 4189 8.138365 TCTGCAGGTTTTATTATCACGATAAC 57.862 34.615 15.13 0.00 36.24 1.89
3160 4212 7.049799 ACACTGGTTAGTTTGCAAACATAAT 57.950 32.000 36.46 22.18 41.30 1.28
3161 4213 8.172352 ACACTGGTTAGTTTGCAAACATAATA 57.828 30.769 36.46 21.23 41.30 0.98
3162 4214 8.296713 ACACTGGTTAGTTTGCAAACATAATAG 58.703 33.333 36.46 28.68 41.30 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.974965 AGTTTGTTTTCAGGATTGATCTCAC 58.025 36.000 0.00 0.00 32.27 3.51
2 3 6.772233 TGAGTTTGTTTTCAGGATTGATCTCA 59.228 34.615 0.00 0.00 32.27 3.27
3 4 7.206981 TGAGTTTGTTTTCAGGATTGATCTC 57.793 36.000 0.00 0.00 32.27 2.75
4 5 6.294397 GCTGAGTTTGTTTTCAGGATTGATCT 60.294 38.462 3.94 0.00 40.85 2.75
5 6 5.860716 GCTGAGTTTGTTTTCAGGATTGATC 59.139 40.000 3.94 0.00 40.85 2.92
6 7 5.537674 AGCTGAGTTTGTTTTCAGGATTGAT 59.462 36.000 3.94 0.00 40.85 2.57
7 8 4.889409 AGCTGAGTTTGTTTTCAGGATTGA 59.111 37.500 3.94 0.00 40.85 2.57
8 9 5.192327 AGCTGAGTTTGTTTTCAGGATTG 57.808 39.130 3.94 0.00 40.85 2.67
9 10 4.889409 TGAGCTGAGTTTGTTTTCAGGATT 59.111 37.500 0.00 0.00 40.85 3.01
10 11 4.276926 GTGAGCTGAGTTTGTTTTCAGGAT 59.723 41.667 0.00 0.00 40.85 3.24
11 12 3.627577 GTGAGCTGAGTTTGTTTTCAGGA 59.372 43.478 0.00 0.00 40.85 3.86
12 13 3.378112 TGTGAGCTGAGTTTGTTTTCAGG 59.622 43.478 0.00 0.00 40.85 3.86
13 14 4.621068 TGTGAGCTGAGTTTGTTTTCAG 57.379 40.909 0.00 0.00 42.87 3.02
14 15 5.384063 TTTGTGAGCTGAGTTTGTTTTCA 57.616 34.783 0.00 0.00 0.00 2.69
15 16 6.142958 GCTATTTGTGAGCTGAGTTTGTTTTC 59.857 38.462 0.00 0.00 36.96 2.29
16 17 5.979517 GCTATTTGTGAGCTGAGTTTGTTTT 59.020 36.000 0.00 0.00 36.96 2.43
17 18 5.067674 TGCTATTTGTGAGCTGAGTTTGTTT 59.932 36.000 0.00 0.00 40.76 2.83
18 19 4.580167 TGCTATTTGTGAGCTGAGTTTGTT 59.420 37.500 0.00 0.00 40.76 2.83
19 20 4.136796 TGCTATTTGTGAGCTGAGTTTGT 58.863 39.130 0.00 0.00 40.76 2.83
20 21 4.754372 TGCTATTTGTGAGCTGAGTTTG 57.246 40.909 0.00 0.00 40.76 2.93
21 22 5.972107 ATTGCTATTTGTGAGCTGAGTTT 57.028 34.783 0.00 0.00 40.76 2.66
22 23 7.636150 ATTATTGCTATTTGTGAGCTGAGTT 57.364 32.000 0.00 0.00 40.76 3.01
23 24 7.121759 ACAATTATTGCTATTTGTGAGCTGAGT 59.878 33.333 4.68 0.00 40.76 3.41
24 25 7.478322 ACAATTATTGCTATTTGTGAGCTGAG 58.522 34.615 4.68 0.00 40.76 3.35
25 26 7.395190 ACAATTATTGCTATTTGTGAGCTGA 57.605 32.000 4.68 0.00 40.76 4.26
26 27 9.177304 CATACAATTATTGCTATTTGTGAGCTG 57.823 33.333 4.68 0.00 40.76 4.24
27 28 8.355169 CCATACAATTATTGCTATTTGTGAGCT 58.645 33.333 4.68 0.00 40.76 4.09
28 29 8.137437 ACCATACAATTATTGCTATTTGTGAGC 58.863 33.333 4.68 0.00 40.53 4.26
29 30 9.454585 CACCATACAATTATTGCTATTTGTGAG 57.545 33.333 4.68 2.25 34.74 3.51
30 31 8.412456 CCACCATACAATTATTGCTATTTGTGA 58.588 33.333 4.68 0.00 34.74 3.58
31 32 7.652909 CCCACCATACAATTATTGCTATTTGTG 59.347 37.037 4.68 10.45 34.74 3.33
32 33 7.686615 GCCCACCATACAATTATTGCTATTTGT 60.687 37.037 4.68 4.14 36.17 2.83
33 34 6.646240 GCCCACCATACAATTATTGCTATTTG 59.354 38.462 4.68 0.00 0.00 2.32
34 35 6.516527 CGCCCACCATACAATTATTGCTATTT 60.517 38.462 4.68 0.00 0.00 1.40
35 36 5.048083 CGCCCACCATACAATTATTGCTATT 60.048 40.000 4.68 0.00 0.00 1.73
36 37 4.458989 CGCCCACCATACAATTATTGCTAT 59.541 41.667 4.68 0.41 0.00 2.97
37 38 3.818210 CGCCCACCATACAATTATTGCTA 59.182 43.478 4.68 0.00 0.00 3.49
38 39 2.622942 CGCCCACCATACAATTATTGCT 59.377 45.455 4.68 0.00 0.00 3.91
39 40 2.621055 TCGCCCACCATACAATTATTGC 59.379 45.455 4.68 0.00 0.00 3.56
40 41 5.241506 AGAATCGCCCACCATACAATTATTG 59.758 40.000 3.07 3.07 0.00 1.90
41 42 5.241506 CAGAATCGCCCACCATACAATTATT 59.758 40.000 0.00 0.00 0.00 1.40
42 43 4.761739 CAGAATCGCCCACCATACAATTAT 59.238 41.667 0.00 0.00 0.00 1.28
43 44 4.133820 CAGAATCGCCCACCATACAATTA 58.866 43.478 0.00 0.00 0.00 1.40
44 45 2.951642 CAGAATCGCCCACCATACAATT 59.048 45.455 0.00 0.00 0.00 2.32
45 46 2.575532 CAGAATCGCCCACCATACAAT 58.424 47.619 0.00 0.00 0.00 2.71
46 47 2.016604 GCAGAATCGCCCACCATACAA 61.017 52.381 0.00 0.00 0.00 2.41
47 48 0.463654 GCAGAATCGCCCACCATACA 60.464 55.000 0.00 0.00 0.00 2.29
48 49 2.321213 GCAGAATCGCCCACCATAC 58.679 57.895 0.00 0.00 0.00 2.39
49 50 4.876701 GCAGAATCGCCCACCATA 57.123 55.556 0.00 0.00 0.00 2.74
57 58 2.175878 ATAGGTCATGGCAGAATCGC 57.824 50.000 0.00 0.00 0.00 4.58
58 59 3.251729 CCAAATAGGTCATGGCAGAATCG 59.748 47.826 0.00 0.00 0.00 3.34
59 60 4.843220 CCAAATAGGTCATGGCAGAATC 57.157 45.455 0.00 0.00 0.00 2.52
77 78 9.661563 AGTCGAACATCAATAACTTATAACCAA 57.338 29.630 0.00 0.00 0.00 3.67
78 79 9.661563 AAGTCGAACATCAATAACTTATAACCA 57.338 29.630 0.00 0.00 0.00 3.67
79 80 9.916397 CAAGTCGAACATCAATAACTTATAACC 57.084 33.333 0.00 0.00 0.00 2.85
83 84 8.818057 GCTACAAGTCGAACATCAATAACTTAT 58.182 33.333 0.00 0.00 0.00 1.73
84 85 8.033038 AGCTACAAGTCGAACATCAATAACTTA 58.967 33.333 0.00 0.00 0.00 2.24
85 86 6.874134 AGCTACAAGTCGAACATCAATAACTT 59.126 34.615 0.00 0.00 0.00 2.66
86 87 6.311445 CAGCTACAAGTCGAACATCAATAACT 59.689 38.462 0.00 0.00 0.00 2.24
87 88 6.090898 ACAGCTACAAGTCGAACATCAATAAC 59.909 38.462 0.00 0.00 0.00 1.89
88 89 6.090763 CACAGCTACAAGTCGAACATCAATAA 59.909 38.462 0.00 0.00 0.00 1.40
89 90 5.576774 CACAGCTACAAGTCGAACATCAATA 59.423 40.000 0.00 0.00 0.00 1.90
90 91 4.389992 CACAGCTACAAGTCGAACATCAAT 59.610 41.667 0.00 0.00 0.00 2.57
91 92 3.740832 CACAGCTACAAGTCGAACATCAA 59.259 43.478 0.00 0.00 0.00 2.57
92 93 3.005367 TCACAGCTACAAGTCGAACATCA 59.995 43.478 0.00 0.00 0.00 3.07
93 94 3.575630 TCACAGCTACAAGTCGAACATC 58.424 45.455 0.00 0.00 0.00 3.06
94 95 3.579709 CTCACAGCTACAAGTCGAACAT 58.420 45.455 0.00 0.00 0.00 2.71
95 96 2.862530 GCTCACAGCTACAAGTCGAACA 60.863 50.000 0.00 0.00 38.45 3.18
96 97 1.721926 GCTCACAGCTACAAGTCGAAC 59.278 52.381 0.00 0.00 38.45 3.95
97 98 1.339929 TGCTCACAGCTACAAGTCGAA 59.660 47.619 0.00 0.00 42.97 3.71
98 99 0.958822 TGCTCACAGCTACAAGTCGA 59.041 50.000 0.00 0.00 42.97 4.20
99 100 1.063806 GTGCTCACAGCTACAAGTCG 58.936 55.000 0.00 0.00 42.97 4.18
100 101 2.447244 AGTGCTCACAGCTACAAGTC 57.553 50.000 2.63 0.00 42.97 3.01
101 102 2.158900 ACAAGTGCTCACAGCTACAAGT 60.159 45.455 2.63 0.00 42.97 3.16
102 103 2.222678 CACAAGTGCTCACAGCTACAAG 59.777 50.000 2.63 0.00 42.97 3.16
103 104 2.212652 CACAAGTGCTCACAGCTACAA 58.787 47.619 2.63 0.00 42.97 2.41
104 105 1.138859 ACACAAGTGCTCACAGCTACA 59.861 47.619 0.00 0.00 42.97 2.74
105 106 1.871080 ACACAAGTGCTCACAGCTAC 58.129 50.000 0.00 0.00 42.97 3.58
106 107 2.212652 CAACACAAGTGCTCACAGCTA 58.787 47.619 0.00 0.00 42.97 3.32
107 108 1.019673 CAACACAAGTGCTCACAGCT 58.980 50.000 0.00 0.00 42.97 4.24
108 109 0.734889 ACAACACAAGTGCTCACAGC 59.265 50.000 0.00 0.00 42.82 4.40
109 110 2.789208 CAACAACACAAGTGCTCACAG 58.211 47.619 0.00 0.00 0.00 3.66
110 111 1.135431 GCAACAACACAAGTGCTCACA 60.135 47.619 0.00 0.00 0.00 3.58
111 112 1.135431 TGCAACAACACAAGTGCTCAC 60.135 47.619 0.00 0.00 0.00 3.51
112 113 1.172175 TGCAACAACACAAGTGCTCA 58.828 45.000 0.00 0.00 0.00 4.26
113 114 2.276472 TTGCAACAACACAAGTGCTC 57.724 45.000 0.00 0.00 0.00 4.26
114 115 2.739885 TTTGCAACAACACAAGTGCT 57.260 40.000 0.00 0.00 0.00 4.40
115 116 3.124976 ACAATTTGCAACAACACAAGTGC 59.875 39.130 0.00 0.00 0.00 4.40
116 117 4.925061 ACAATTTGCAACAACACAAGTG 57.075 36.364 0.00 0.00 0.00 3.16
117 118 5.719173 ACTACAATTTGCAACAACACAAGT 58.281 33.333 0.00 0.00 0.00 3.16
118 119 6.309980 TCAACTACAATTTGCAACAACACAAG 59.690 34.615 0.00 0.00 0.00 3.16
119 120 6.159293 TCAACTACAATTTGCAACAACACAA 58.841 32.000 0.00 0.00 0.00 3.33
120 121 5.714047 TCAACTACAATTTGCAACAACACA 58.286 33.333 0.00 0.00 0.00 3.72
121 122 5.276348 GCTCAACTACAATTTGCAACAACAC 60.276 40.000 0.00 0.00 0.00 3.32
122 123 4.803088 GCTCAACTACAATTTGCAACAACA 59.197 37.500 0.00 0.00 0.00 3.33
123 124 5.043248 AGCTCAACTACAATTTGCAACAAC 58.957 37.500 0.00 0.00 0.00 3.32
124 125 5.261209 AGCTCAACTACAATTTGCAACAA 57.739 34.783 0.00 0.00 0.00 2.83
125 126 4.916983 AGCTCAACTACAATTTGCAACA 57.083 36.364 0.00 0.00 0.00 3.33
126 127 6.413269 CAAAAGCTCAACTACAATTTGCAAC 58.587 36.000 0.00 0.00 0.00 4.17
127 128 5.006552 GCAAAAGCTCAACTACAATTTGCAA 59.993 36.000 17.44 0.00 46.20 4.08
128 129 4.507388 GCAAAAGCTCAACTACAATTTGCA 59.493 37.500 17.44 0.00 46.20 4.08
129 130 4.746611 AGCAAAAGCTCAACTACAATTTGC 59.253 37.500 15.49 15.49 46.89 3.68
130 131 6.833342 AAGCAAAAGCTCAACTACAATTTG 57.167 33.333 0.00 0.00 0.00 2.32
131 132 8.143835 ACATAAGCAAAAGCTCAACTACAATTT 58.856 29.630 0.00 0.00 0.00 1.82
132 133 7.661040 ACATAAGCAAAAGCTCAACTACAATT 58.339 30.769 0.00 0.00 0.00 2.32
133 134 7.219484 ACATAAGCAAAAGCTCAACTACAAT 57.781 32.000 0.00 0.00 0.00 2.71
134 135 6.633500 ACATAAGCAAAAGCTCAACTACAA 57.367 33.333 0.00 0.00 0.00 2.41
135 136 6.039270 ACAACATAAGCAAAAGCTCAACTACA 59.961 34.615 0.00 0.00 0.00 2.74
136 137 6.438763 ACAACATAAGCAAAAGCTCAACTAC 58.561 36.000 0.00 0.00 0.00 2.73
137 138 6.633500 ACAACATAAGCAAAAGCTCAACTA 57.367 33.333 0.00 0.00 0.00 2.24
138 139 5.520376 ACAACATAAGCAAAAGCTCAACT 57.480 34.783 0.00 0.00 0.00 3.16
139 140 6.205784 TGTACAACATAAGCAAAAGCTCAAC 58.794 36.000 0.00 0.00 0.00 3.18
140 141 6.039270 ACTGTACAACATAAGCAAAAGCTCAA 59.961 34.615 0.00 0.00 0.00 3.02
141 142 5.530915 ACTGTACAACATAAGCAAAAGCTCA 59.469 36.000 0.00 0.00 0.00 4.26
142 143 5.853282 CACTGTACAACATAAGCAAAAGCTC 59.147 40.000 0.00 0.00 0.00 4.09
143 144 5.278463 CCACTGTACAACATAAGCAAAAGCT 60.278 40.000 0.00 0.00 0.00 3.74
144 145 4.917415 CCACTGTACAACATAAGCAAAAGC 59.083 41.667 0.00 0.00 0.00 3.51
145 146 5.240623 TCCCACTGTACAACATAAGCAAAAG 59.759 40.000 0.00 0.00 0.00 2.27
146 147 5.133941 TCCCACTGTACAACATAAGCAAAA 58.866 37.500 0.00 0.00 0.00 2.44
147 148 4.720046 TCCCACTGTACAACATAAGCAAA 58.280 39.130 0.00 0.00 0.00 3.68
148 149 4.359434 TCCCACTGTACAACATAAGCAA 57.641 40.909 0.00 0.00 0.00 3.91
149 150 4.568072 ATCCCACTGTACAACATAAGCA 57.432 40.909 0.00 0.00 0.00 3.91
150 151 5.424757 TGTATCCCACTGTACAACATAAGC 58.575 41.667 0.00 0.00 0.00 3.09
151 152 8.506168 AAATGTATCCCACTGTACAACATAAG 57.494 34.615 7.35 0.00 34.77 1.73
152 153 8.871629 AAAATGTATCCCACTGTACAACATAA 57.128 30.769 7.35 0.00 34.77 1.90
153 154 7.554835 GGAAAATGTATCCCACTGTACAACATA 59.445 37.037 7.35 0.00 34.77 2.29
154 155 6.377146 GGAAAATGTATCCCACTGTACAACAT 59.623 38.462 0.00 0.00 34.77 2.71
155 156 5.708230 GGAAAATGTATCCCACTGTACAACA 59.292 40.000 0.00 0.00 34.77 3.33
156 157 5.708230 TGGAAAATGTATCCCACTGTACAAC 59.292 40.000 0.00 0.00 36.04 3.32
157 158 5.882040 TGGAAAATGTATCCCACTGTACAA 58.118 37.500 0.00 0.00 36.04 2.41
158 159 5.506730 TGGAAAATGTATCCCACTGTACA 57.493 39.130 0.00 0.00 36.04 2.90
159 160 6.349860 GGTTTGGAAAATGTATCCCACTGTAC 60.350 42.308 0.00 0.00 36.04 2.90
160 161 5.712917 GGTTTGGAAAATGTATCCCACTGTA 59.287 40.000 0.00 0.00 36.04 2.74
161 162 4.526650 GGTTTGGAAAATGTATCCCACTGT 59.473 41.667 0.00 0.00 36.04 3.55
162 163 4.772100 AGGTTTGGAAAATGTATCCCACTG 59.228 41.667 0.00 0.00 36.04 3.66
163 164 5.010708 AGGTTTGGAAAATGTATCCCACT 57.989 39.130 0.00 0.00 36.04 4.00
164 165 8.706322 ATATAGGTTTGGAAAATGTATCCCAC 57.294 34.615 0.00 0.00 36.04 4.61
176 177 9.793259 GTTTCTCATCCATATATAGGTTTGGAA 57.207 33.333 6.84 2.24 41.36 3.53
177 178 8.944138 TGTTTCTCATCCATATATAGGTTTGGA 58.056 33.333 5.47 5.47 42.18 3.53
178 179 9.573166 TTGTTTCTCATCCATATATAGGTTTGG 57.427 33.333 0.00 0.00 0.00 3.28
180 181 9.799106 CCTTGTTTCTCATCCATATATAGGTTT 57.201 33.333 0.00 0.00 0.00 3.27
181 182 8.386264 CCCTTGTTTCTCATCCATATATAGGTT 58.614 37.037 0.00 0.00 0.00 3.50
182 183 7.037297 CCCCTTGTTTCTCATCCATATATAGGT 60.037 40.741 0.00 0.00 0.00 3.08
183 184 7.037297 ACCCCTTGTTTCTCATCCATATATAGG 60.037 40.741 0.00 0.00 0.00 2.57
184 185 7.922382 ACCCCTTGTTTCTCATCCATATATAG 58.078 38.462 0.00 0.00 0.00 1.31
185 186 7.037586 GGACCCCTTGTTTCTCATCCATATATA 60.038 40.741 0.00 0.00 0.00 0.86
186 187 6.240292 GGACCCCTTGTTTCTCATCCATATAT 60.240 42.308 0.00 0.00 0.00 0.86
187 188 5.073144 GGACCCCTTGTTTCTCATCCATATA 59.927 44.000 0.00 0.00 0.00 0.86
188 189 4.141158 GGACCCCTTGTTTCTCATCCATAT 60.141 45.833 0.00 0.00 0.00 1.78
189 190 3.202151 GGACCCCTTGTTTCTCATCCATA 59.798 47.826 0.00 0.00 0.00 2.74
190 191 2.024941 GGACCCCTTGTTTCTCATCCAT 60.025 50.000 0.00 0.00 0.00 3.41
191 192 1.354368 GGACCCCTTGTTTCTCATCCA 59.646 52.381 0.00 0.00 0.00 3.41
192 193 1.354368 TGGACCCCTTGTTTCTCATCC 59.646 52.381 0.00 0.00 0.00 3.51
193 194 2.879103 TGGACCCCTTGTTTCTCATC 57.121 50.000 0.00 0.00 0.00 2.92
194 195 3.611025 TTTGGACCCCTTGTTTCTCAT 57.389 42.857 0.00 0.00 0.00 2.90
195 196 3.390175 TTTTGGACCCCTTGTTTCTCA 57.610 42.857 0.00 0.00 0.00 3.27
196 197 4.955811 ATTTTTGGACCCCTTGTTTCTC 57.044 40.909 0.00 0.00 0.00 2.87
197 198 5.034852 CAATTTTTGGACCCCTTGTTTCT 57.965 39.130 0.00 0.00 0.00 2.52
227 228 9.816787 AGGGTCCAATTTACATAAAAGAAAGTA 57.183 29.630 0.00 0.00 0.00 2.24
228 229 8.721133 AGGGTCCAATTTACATAAAAGAAAGT 57.279 30.769 0.00 0.00 0.00 2.66
229 230 9.025041 AGAGGGTCCAATTTACATAAAAGAAAG 57.975 33.333 0.00 0.00 0.00 2.62
230 231 8.802267 CAGAGGGTCCAATTTACATAAAAGAAA 58.198 33.333 0.00 0.00 0.00 2.52
231 232 7.093945 GCAGAGGGTCCAATTTACATAAAAGAA 60.094 37.037 0.00 0.00 0.00 2.52
232 233 6.377146 GCAGAGGGTCCAATTTACATAAAAGA 59.623 38.462 0.00 0.00 0.00 2.52
233 234 6.378280 AGCAGAGGGTCCAATTTACATAAAAG 59.622 38.462 0.00 0.00 0.00 2.27
234 235 6.252995 AGCAGAGGGTCCAATTTACATAAAA 58.747 36.000 0.00 0.00 0.00 1.52
235 236 5.826643 AGCAGAGGGTCCAATTTACATAAA 58.173 37.500 0.00 0.00 0.00 1.40
236 237 5.450818 AGCAGAGGGTCCAATTTACATAA 57.549 39.130 0.00 0.00 0.00 1.90
237 238 6.558775 AGATAGCAGAGGGTCCAATTTACATA 59.441 38.462 0.00 0.00 0.00 2.29
238 239 5.370880 AGATAGCAGAGGGTCCAATTTACAT 59.629 40.000 0.00 0.00 0.00 2.29
239 240 4.721776 AGATAGCAGAGGGTCCAATTTACA 59.278 41.667 0.00 0.00 0.00 2.41
240 241 5.297569 AGATAGCAGAGGGTCCAATTTAC 57.702 43.478 0.00 0.00 0.00 2.01
241 242 5.975988 AAGATAGCAGAGGGTCCAATTTA 57.024 39.130 0.00 0.00 0.00 1.40
242 243 4.870021 AAGATAGCAGAGGGTCCAATTT 57.130 40.909 0.00 0.00 0.00 1.82
243 244 4.870021 AAAGATAGCAGAGGGTCCAATT 57.130 40.909 0.00 0.00 0.00 2.32
244 245 4.870021 AAAAGATAGCAGAGGGTCCAAT 57.130 40.909 0.00 0.00 0.00 3.16
245 246 4.783227 ACTAAAAGATAGCAGAGGGTCCAA 59.217 41.667 0.00 0.00 0.00 3.53
246 247 4.362677 ACTAAAAGATAGCAGAGGGTCCA 58.637 43.478 0.00 0.00 0.00 4.02
247 248 5.360649 AACTAAAAGATAGCAGAGGGTCC 57.639 43.478 0.00 0.00 0.00 4.46
248 249 5.104900 TGGAACTAAAAGATAGCAGAGGGTC 60.105 44.000 0.00 0.00 0.00 4.46
249 250 4.783227 TGGAACTAAAAGATAGCAGAGGGT 59.217 41.667 0.00 0.00 0.00 4.34
250 251 5.359194 TGGAACTAAAAGATAGCAGAGGG 57.641 43.478 0.00 0.00 0.00 4.30
251 252 6.825610 AGATGGAACTAAAAGATAGCAGAGG 58.174 40.000 0.00 0.00 0.00 3.69
252 253 9.823647 TTAAGATGGAACTAAAAGATAGCAGAG 57.176 33.333 0.00 0.00 0.00 3.35
253 254 9.601217 GTTAAGATGGAACTAAAAGATAGCAGA 57.399 33.333 0.00 0.00 0.00 4.26
254 255 9.606631 AGTTAAGATGGAACTAAAAGATAGCAG 57.393 33.333 0.00 0.00 35.36 4.24
255 256 9.383519 CAGTTAAGATGGAACTAAAAGATAGCA 57.616 33.333 0.00 0.00 35.36 3.49
256 257 8.831550 CCAGTTAAGATGGAACTAAAAGATAGC 58.168 37.037 1.02 0.00 40.51 2.97
257 258 9.892130 ACCAGTTAAGATGGAACTAAAAGATAG 57.108 33.333 12.56 0.00 40.51 2.08
260 261 9.498176 GTAACCAGTTAAGATGGAACTAAAAGA 57.502 33.333 12.56 0.00 40.51 2.52
261 262 9.503399 AGTAACCAGTTAAGATGGAACTAAAAG 57.497 33.333 12.56 0.00 40.51 2.27
263 264 9.933723 GTAGTAACCAGTTAAGATGGAACTAAA 57.066 33.333 12.56 1.54 39.37 1.85
264 265 8.246180 CGTAGTAACCAGTTAAGATGGAACTAA 58.754 37.037 12.56 4.20 39.37 2.24
265 266 7.394359 ACGTAGTAACCAGTTAAGATGGAACTA 59.606 37.037 12.56 14.16 41.94 2.24
266 267 6.210185 ACGTAGTAACCAGTTAAGATGGAACT 59.790 38.462 12.56 14.90 41.94 3.01
267 268 6.309737 CACGTAGTAACCAGTTAAGATGGAAC 59.690 42.308 12.56 9.88 41.61 3.62
268 269 6.392354 CACGTAGTAACCAGTTAAGATGGAA 58.608 40.000 12.56 0.00 41.61 3.53
269 270 5.622914 GCACGTAGTAACCAGTTAAGATGGA 60.623 44.000 12.56 0.00 41.61 3.41
270 271 4.565564 GCACGTAGTAACCAGTTAAGATGG 59.434 45.833 5.30 5.30 41.61 3.51
271 272 5.165676 TGCACGTAGTAACCAGTTAAGATG 58.834 41.667 0.00 0.00 41.61 2.90
272 273 5.395682 TGCACGTAGTAACCAGTTAAGAT 57.604 39.130 0.00 0.00 41.61 2.40
273 274 4.852134 TGCACGTAGTAACCAGTTAAGA 57.148 40.909 0.00 0.00 41.61 2.10
274 275 5.614013 GCTTTGCACGTAGTAACCAGTTAAG 60.614 44.000 0.00 0.00 41.61 1.85
275 276 4.211794 GCTTTGCACGTAGTAACCAGTTAA 59.788 41.667 0.00 0.00 41.61 2.01
276 277 3.742369 GCTTTGCACGTAGTAACCAGTTA 59.258 43.478 0.00 0.00 41.61 2.24
277 278 2.546789 GCTTTGCACGTAGTAACCAGTT 59.453 45.455 0.00 0.00 41.61 3.16
278 279 2.140717 GCTTTGCACGTAGTAACCAGT 58.859 47.619 0.00 0.00 41.61 4.00
279 280 2.139917 TGCTTTGCACGTAGTAACCAG 58.860 47.619 0.00 0.00 41.61 4.00
280 281 2.242047 TGCTTTGCACGTAGTAACCA 57.758 45.000 0.00 0.00 41.61 3.67
292 293 1.120437 GTAAACTGCACGTGCTTTGC 58.880 50.000 37.59 28.46 42.66 3.68
293 294 2.755836 AGTAAACTGCACGTGCTTTG 57.244 45.000 37.59 28.20 42.66 2.77
294 295 3.463944 ACTAGTAAACTGCACGTGCTTT 58.536 40.909 37.59 30.67 42.66 3.51
295 296 3.107642 ACTAGTAAACTGCACGTGCTT 57.892 42.857 37.59 26.59 42.66 3.91
296 297 2.814280 ACTAGTAAACTGCACGTGCT 57.186 45.000 37.59 22.18 42.66 4.40
297 298 5.107220 ACAAATACTAGTAAACTGCACGTGC 60.107 40.000 33.11 33.11 42.50 5.34
298 299 6.462073 ACAAATACTAGTAAACTGCACGTG 57.538 37.500 12.28 12.28 0.00 4.49
299 300 6.480981 ACAACAAATACTAGTAAACTGCACGT 59.519 34.615 6.70 1.13 0.00 4.49
300 301 6.884187 ACAACAAATACTAGTAAACTGCACG 58.116 36.000 6.70 0.60 0.00 5.34
301 302 8.339714 TCAACAACAAATACTAGTAAACTGCAC 58.660 33.333 6.70 0.00 0.00 4.57
302 303 8.439993 TCAACAACAAATACTAGTAAACTGCA 57.560 30.769 6.70 0.00 0.00 4.41
303 304 9.543018 GATCAACAACAAATACTAGTAAACTGC 57.457 33.333 6.70 0.00 0.00 4.40
313 314 9.561069 AGTCTAGTTTGATCAACAACAAATACT 57.439 29.630 7.89 8.85 37.93 2.12
321 322 7.862372 GCAATTCAAGTCTAGTTTGATCAACAA 59.138 33.333 7.89 0.00 37.93 2.83
325 326 6.936335 TCTGCAATTCAAGTCTAGTTTGATCA 59.064 34.615 11.40 0.00 34.76 2.92
386 387 9.255304 ACGCATTCAAGTGTATTTGTTTTTATT 57.745 25.926 0.00 0.00 0.00 1.40
387 388 8.698854 CACGCATTCAAGTGTATTTGTTTTTAT 58.301 29.630 0.00 0.00 33.97 1.40
388 389 7.168302 CCACGCATTCAAGTGTATTTGTTTTTA 59.832 33.333 0.00 0.00 36.69 1.52
389 390 6.019156 CCACGCATTCAAGTGTATTTGTTTTT 60.019 34.615 0.00 0.00 36.69 1.94
390 391 5.461737 CCACGCATTCAAGTGTATTTGTTTT 59.538 36.000 0.00 0.00 36.69 2.43
400 401 1.452110 TCCATCCACGCATTCAAGTG 58.548 50.000 0.00 0.00 38.05 3.16
431 432 1.152963 ACAGGTTCAAGGCTTGCGT 60.153 52.632 22.31 8.20 0.00 5.24
474 475 2.585153 GCTCCGAACCTTCTCCCC 59.415 66.667 0.00 0.00 0.00 4.81
509 510 3.678717 CTCCCGTACGTGCAGTCGG 62.679 68.421 15.21 6.32 40.63 4.79
512 513 1.177256 ACTTCTCCCGTACGTGCAGT 61.177 55.000 15.21 7.03 0.00 4.40
540 541 1.903404 CTTTTTGCCCCTCCGTGCT 60.903 57.895 0.00 0.00 0.00 4.40
548 549 3.305709 GCACTTTCCTTTTTGCCCC 57.694 52.632 0.00 0.00 0.00 5.80
551 552 2.029918 AGATCGGCACTTTCCTTTTTGC 60.030 45.455 0.00 0.00 0.00 3.68
564 597 2.426522 GCCATTAATGCTAGATCGGCA 58.573 47.619 16.28 16.28 44.05 5.69
565 598 1.740025 GGCCATTAATGCTAGATCGGC 59.260 52.381 10.11 5.36 37.57 5.54
649 682 7.066284 GTGTCATCATCACTAATTAAGCTTGGT 59.934 37.037 9.86 0.00 33.59 3.67
729 762 1.979693 GGTAAAATGCCGGGTGCCA 60.980 57.895 2.18 0.00 40.16 4.92
745 778 6.571537 CGCACTAATTCATTTTTAGTTGGGGT 60.572 38.462 0.00 0.00 37.71 4.95
747 780 6.386654 ACGCACTAATTCATTTTTAGTTGGG 58.613 36.000 0.00 0.00 37.71 4.12
775 808 2.215196 GGGAGCCGCGTCATTAATTAA 58.785 47.619 4.92 0.00 0.00 1.40
978 1017 0.544223 CTCCTCTCCTCTCGTCTCCA 59.456 60.000 0.00 0.00 0.00 3.86
1495 2499 2.044946 GGAGCTTCCACCGGCAAT 60.045 61.111 0.00 0.00 36.28 3.56
1496 2500 3.249189 AGGAGCTTCCACCGGCAA 61.249 61.111 0.00 0.00 39.61 4.52
1577 2581 3.036429 ATGGCCAGTTCGAGGAGGC 62.036 63.158 13.05 13.71 46.28 4.70
1632 2636 4.776322 ATGGCGCCGTAGCTGCAA 62.776 61.111 22.45 0.00 39.33 4.08
1884 2891 4.699522 GGGAAGAAGCCGCCGTGT 62.700 66.667 0.00 0.00 0.00 4.49
1945 2952 4.863707 CCACATGGTCAGATCGGG 57.136 61.111 0.00 0.00 0.00 5.14
2210 3227 5.347907 CGTGTACTATTTGGAAGTGAAGGTC 59.652 44.000 0.00 0.00 0.00 3.85
2259 3279 5.163519 ACACTACGACTCTAGTAGAGGACTC 60.164 48.000 27.07 16.34 46.45 3.36
2260 3280 4.711355 ACACTACGACTCTAGTAGAGGACT 59.289 45.833 27.07 9.91 46.45 3.85
2261 3281 5.009854 ACACTACGACTCTAGTAGAGGAC 57.990 47.826 27.07 19.54 46.45 3.85
2262 3282 4.708909 TGACACTACGACTCTAGTAGAGGA 59.291 45.833 27.07 11.29 46.45 3.71
2263 3283 5.008619 TGACACTACGACTCTAGTAGAGG 57.991 47.826 27.07 14.98 46.45 3.69
2403 3423 0.400594 AGCTAGCCCGTTGTTCCTTT 59.599 50.000 12.13 0.00 0.00 3.11
2405 3425 1.497161 ATAGCTAGCCCGTTGTTCCT 58.503 50.000 12.13 0.00 0.00 3.36
2408 3428 3.036091 TCCTAATAGCTAGCCCGTTGTT 58.964 45.455 12.13 0.00 0.00 2.83
2413 3433 2.494073 CCTTCTCCTAATAGCTAGCCCG 59.506 54.545 12.13 0.00 0.00 6.13
2418 3438 4.514441 CGAACGACCTTCTCCTAATAGCTA 59.486 45.833 0.00 0.00 0.00 3.32
2440 3460 1.835483 GCTGCTGGTTGACTGACACG 61.835 60.000 0.00 0.00 0.00 4.49
2446 3466 1.302351 GCTGAGCTGCTGGTTGACT 60.302 57.895 7.01 0.00 0.00 3.41
2451 3471 2.047465 CGAAGCTGAGCTGCTGGT 60.047 61.111 8.16 0.00 43.24 4.00
2467 3487 4.631377 TGTACAAAATTGCTGGATCTCTCG 59.369 41.667 0.00 0.00 0.00 4.04
2510 3534 1.172180 TGCCTGTTCTTTTCCGGCAG 61.172 55.000 0.00 0.00 45.08 4.85
2595 3632 5.001232 GCATACCTAGAAAATTGCCGGATA 58.999 41.667 5.05 0.00 0.00 2.59
2618 3655 6.073548 GGCTACATGAGACCATTTATTCGAAG 60.074 42.308 3.35 0.00 0.00 3.79
2621 3658 5.597813 GGCTACATGAGACCATTTATTCG 57.402 43.478 0.00 0.00 0.00 3.34
2758 3796 6.754675 ACTCGGTTTTTCAAACAAATACAAGG 59.245 34.615 2.00 0.00 0.00 3.61
2797 3835 0.969149 TCGTTCTGATGCTCCACAGT 59.031 50.000 0.00 0.00 35.84 3.55
2804 3842 5.482908 AGATTAACTTGTCGTTCTGATGCT 58.517 37.500 0.00 0.00 37.05 3.79
2835 3874 5.211201 AGCCCACATTAATCCAGCTTTAAT 58.789 37.500 0.00 0.00 31.13 1.40
2836 3875 4.609301 AGCCCACATTAATCCAGCTTTAA 58.391 39.130 0.00 0.00 0.00 1.52
2837 3876 4.249638 AGCCCACATTAATCCAGCTTTA 57.750 40.909 0.00 0.00 0.00 1.85
2923 3969 6.804295 GCACGGATTATGTCAGTCTCTTATAG 59.196 42.308 0.00 0.00 32.67 1.31
2930 3976 3.132824 TGATGCACGGATTATGTCAGTCT 59.867 43.478 0.00 0.00 32.67 3.24
2931 3977 3.457234 TGATGCACGGATTATGTCAGTC 58.543 45.455 0.00 0.00 32.67 3.51
2932 3978 3.541996 TGATGCACGGATTATGTCAGT 57.458 42.857 0.00 0.00 35.53 3.41
2933 3979 4.313282 AGATGATGCACGGATTATGTCAG 58.687 43.478 0.00 0.00 0.00 3.51
2934 3980 4.309933 GAGATGATGCACGGATTATGTCA 58.690 43.478 0.00 0.00 0.00 3.58
2935 3981 3.366121 CGAGATGATGCACGGATTATGTC 59.634 47.826 0.00 0.00 0.00 3.06
2936 3982 3.243873 ACGAGATGATGCACGGATTATGT 60.244 43.478 0.00 0.00 0.00 2.29
2937 3983 3.320626 ACGAGATGATGCACGGATTATG 58.679 45.455 0.00 0.00 0.00 1.90
2962 4008 1.068333 CCAAACTGCATCTTCCCGTTG 60.068 52.381 0.00 0.00 0.00 4.10
3008 4054 7.729881 TGTTTCAGGGGTAAGTAACTCTAACTA 59.270 37.037 0.00 0.00 0.00 2.24
3014 4060 4.964593 TGTGTTTCAGGGGTAAGTAACTC 58.035 43.478 0.00 0.00 0.00 3.01
3134 4186 5.899120 TGTTTGCAAACTAACCAGTGTTA 57.101 34.783 35.09 13.79 39.59 2.41
3137 4189 8.296713 ACTATTATGTTTGCAAACTAACCAGTG 58.703 33.333 35.09 22.04 39.59 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.