Multiple sequence alignment - TraesCS3B01G454500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G454500 chr3B 100.000 3584 0 0 1 3584 696329084 696325501 0.000000e+00 6619
1 TraesCS3B01G454500 chr3A 93.693 2093 92 22 1 2080 661474241 661472176 0.000000e+00 3097
2 TraesCS3B01G454500 chr3A 92.605 1528 58 32 2078 3584 661472126 661470633 0.000000e+00 2145
3 TraesCS3B01G454500 chr3D 94.141 2048 68 16 1 2021 526975479 526973457 0.000000e+00 3070
4 TraesCS3B01G454500 chr3D 93.303 1523 66 24 2078 3584 526973361 526971859 0.000000e+00 2215
5 TraesCS3B01G454500 chr7D 90.956 586 50 1 1 586 496314729 496314147 0.000000e+00 785
6 TraesCS3B01G454500 chr7B 91.845 466 28 7 1536 1998 312023748 312024206 3.020000e-180 641
7 TraesCS3B01G454500 chr7B 91.631 466 31 6 1536 1998 311927073 311927533 3.900000e-179 638
8 TraesCS3B01G454500 chr7B 96.094 128 5 0 948 1075 312023623 312023750 3.630000e-50 209
9 TraesCS3B01G454500 chr7B 95.312 128 6 0 948 1075 311926948 311927075 1.690000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G454500 chr3B 696325501 696329084 3583 True 6619.0 6619 100.0000 1 3584 1 chr3B.!!$R1 3583
1 TraesCS3B01G454500 chr3A 661470633 661474241 3608 True 2621.0 3097 93.1490 1 3584 2 chr3A.!!$R1 3583
2 TraesCS3B01G454500 chr3D 526971859 526975479 3620 True 2642.5 3070 93.7220 1 3584 2 chr3D.!!$R1 3583
3 TraesCS3B01G454500 chr7D 496314147 496314729 582 True 785.0 785 90.9560 1 586 1 chr7D.!!$R1 585
4 TraesCS3B01G454500 chr7B 312023623 312024206 583 False 425.0 641 93.9695 948 1998 2 chr7B.!!$F2 1050
5 TraesCS3B01G454500 chr7B 311926948 311927533 585 False 421.0 638 93.4715 948 1998 2 chr7B.!!$F1 1050

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 556 3.087253 CCCCTCGCCATACCCACA 61.087 66.667 0.0 0.0 0.0 4.17 F
1247 1276 2.223112 CCGATGAAACTGAAATCTGGCG 60.223 50.000 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1537 0.398318 GGTTCAGCACCTTCACCTCT 59.602 55.0 0.0 0.0 43.29 3.69 R
3105 3211 0.110192 GAGCAACGCAAACTAGTGCC 60.110 55.0 0.0 0.0 41.73 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
555 556 3.087253 CCCCTCGCCATACCCACA 61.087 66.667 0.00 0.00 0.00 4.17
1138 1167 3.550678 CGAGCTCGACAAGGTAATTAACC 59.449 47.826 32.06 0.00 45.24 2.85
1190 1219 3.702045 TGGTTTGTTCGTTTCCTTCCATT 59.298 39.130 0.00 0.00 0.00 3.16
1192 1221 4.037565 GGTTTGTTCGTTTCCTTCCATTCT 59.962 41.667 0.00 0.00 0.00 2.40
1196 1225 8.508875 GTTTGTTCGTTTCCTTCCATTCTATTA 58.491 33.333 0.00 0.00 0.00 0.98
1247 1276 2.223112 CCGATGAAACTGAAATCTGGCG 60.223 50.000 0.00 0.00 0.00 5.69
1257 1286 5.730550 ACTGAAATCTGGCGTTGATTAGTA 58.269 37.500 1.68 0.00 34.19 1.82
1263 1292 7.865706 AATCTGGCGTTGATTAGTAGAATTT 57.134 32.000 0.00 0.00 32.98 1.82
1293 1325 7.475840 GTCCATATGATCCTTGTTTGTTTCTC 58.524 38.462 3.65 0.00 0.00 2.87
1303 1336 6.071784 TCCTTGTTTGTTTCTCATGATGATGG 60.072 38.462 0.00 0.00 0.00 3.51
1306 1339 5.769162 TGTTTGTTTCTCATGATGATGGTCA 59.231 36.000 0.00 0.00 0.00 4.02
1434 1468 3.679389 TGCTTCCTTGATCTCAACTTCC 58.321 45.455 0.00 0.00 0.00 3.46
1452 1486 6.266131 ACTTCCTATCCATCTGCCAATTAA 57.734 37.500 0.00 0.00 0.00 1.40
1453 1487 6.064717 ACTTCCTATCCATCTGCCAATTAAC 58.935 40.000 0.00 0.00 0.00 2.01
1456 1490 7.574021 TCCTATCCATCTGCCAATTAACTAT 57.426 36.000 0.00 0.00 0.00 2.12
1485 1519 4.074970 GGCTCTGAAATTGTTTGAGGAGA 58.925 43.478 0.00 0.00 0.00 3.71
1539 1573 2.659063 CCTGACCATCCTGTCGCCA 61.659 63.158 0.00 0.00 38.11 5.69
1642 1676 1.444553 AGCTTCCGCTTCTCGTTCG 60.445 57.895 0.00 0.00 46.47 3.95
1713 1747 3.833070 GGAAGACTGGAGTAAGAGGTGAA 59.167 47.826 0.00 0.00 0.00 3.18
1752 1792 6.386927 ACCAACATGATCACTCCTCCTAATAA 59.613 38.462 0.00 0.00 0.00 1.40
1913 1955 5.474532 TGATTCTCTGAAATTTCCTGTGGTG 59.525 40.000 15.48 2.88 0.00 4.17
1924 1967 2.551270 TCCTGTGGTGCTCTTAGGAAT 58.449 47.619 0.00 0.00 34.77 3.01
2021 2069 9.325198 CCTGAGTGTATTAATTTGCACTACATA 57.675 33.333 15.34 6.56 41.59 2.29
2025 2073 9.845740 AGTGTATTAATTTGCACTACATATGGA 57.154 29.630 7.80 0.00 40.00 3.41
2033 2081 9.712305 AATTTGCACTACATATGGAGATACTAC 57.288 33.333 22.25 4.63 0.00 2.73
2034 2082 7.833285 TTGCACTACATATGGAGATACTACA 57.167 36.000 22.25 7.01 0.00 2.74
2035 2083 8.422577 TTGCACTACATATGGAGATACTACAT 57.577 34.615 22.25 2.05 38.71 2.29
2052 2100 1.849039 ACATTTCCCTCCTGGATCTGG 59.151 52.381 0.00 0.00 44.66 3.86
2056 2104 1.058428 TCCCTCCTGGATCTGGCATG 61.058 60.000 0.00 0.00 38.61 4.06
2113 2215 4.717877 TCTGCTGGAGAAGTTGATGAAAA 58.282 39.130 0.00 0.00 0.00 2.29
2213 2316 3.758554 GGCTTAATTTTCTGTGCTCTGGA 59.241 43.478 0.00 0.00 0.00 3.86
2245 2348 4.095932 CCCTTTTCCAAGTAGTTAATCCGC 59.904 45.833 0.00 0.00 0.00 5.54
2246 2349 4.095932 CCTTTTCCAAGTAGTTAATCCGCC 59.904 45.833 0.00 0.00 0.00 6.13
2251 2354 3.518590 CAAGTAGTTAATCCGCCGTTCT 58.481 45.455 0.00 0.00 0.00 3.01
2257 2360 0.899720 TAATCCGCCGTTCTCCTGTT 59.100 50.000 0.00 0.00 0.00 3.16
2320 2423 3.688553 GGCAGAGCCCTACACATAC 57.311 57.895 0.00 0.00 44.06 2.39
2833 2937 2.299582 CCCTGGAGATACTCTGATGCTG 59.700 54.545 0.00 0.00 0.00 4.41
2896 3000 2.622942 ACACATTCATGCTTTGTTCCGT 59.377 40.909 0.00 0.00 0.00 4.69
2897 3001 3.236816 CACATTCATGCTTTGTTCCGTC 58.763 45.455 0.00 0.00 0.00 4.79
2937 3041 7.775053 TTCTGTCCATTAGGCAGTTAATTTT 57.225 32.000 0.00 0.00 38.98 1.82
2938 3042 7.156876 TCTGTCCATTAGGCAGTTAATTTTG 57.843 36.000 0.00 0.00 38.98 2.44
2991 3096 5.334569 CCGTCGTTGTGAAAATATTCTTGGT 60.335 40.000 0.00 0.00 36.48 3.67
3019 3124 2.504175 ACCAAGTGAGTGTTGTGGTAGT 59.496 45.455 0.00 0.00 40.80 2.73
3024 3129 1.758280 TGAGTGTTGTGGTAGTTCGGT 59.242 47.619 0.00 0.00 0.00 4.69
3025 3130 2.223876 TGAGTGTTGTGGTAGTTCGGTC 60.224 50.000 0.00 0.00 0.00 4.79
3027 3132 2.035576 AGTGTTGTGGTAGTTCGGTCTC 59.964 50.000 0.00 0.00 0.00 3.36
3028 3133 1.342174 TGTTGTGGTAGTTCGGTCTCC 59.658 52.381 0.00 0.00 0.00 3.71
3037 3142 2.847441 AGTTCGGTCTCCCTTTTTCAC 58.153 47.619 0.00 0.00 0.00 3.18
3038 3143 2.171870 AGTTCGGTCTCCCTTTTTCACA 59.828 45.455 0.00 0.00 0.00 3.58
3042 3147 2.228822 CGGTCTCCCTTTTTCACAATGG 59.771 50.000 0.00 0.00 0.00 3.16
3050 3155 5.779260 TCCCTTTTTCACAATGGAATGATGA 59.221 36.000 0.00 0.00 0.00 2.92
3051 3156 6.269538 TCCCTTTTTCACAATGGAATGATGAA 59.730 34.615 0.00 0.00 0.00 2.57
3082 3188 1.812922 GCTGCCATGTCGAGGTCTG 60.813 63.158 0.00 0.00 0.00 3.51
3105 3211 0.934496 TGCGTCTCAAGTTGTTTCGG 59.066 50.000 2.11 0.00 0.00 4.30
3115 3221 2.927028 AGTTGTTTCGGGCACTAGTTT 58.073 42.857 0.00 0.00 0.00 2.66
3135 3241 1.975363 GCGTTGCTCTCACTGGATGC 61.975 60.000 0.00 0.00 0.00 3.91
3145 3251 3.518998 CTGGATGCTGCTGCTGCC 61.519 66.667 25.44 16.65 40.48 4.85
3148 3254 2.512286 GATGCTGCTGCTGCCGTA 60.512 61.111 25.44 10.32 40.48 4.02
3150 3256 4.765449 TGCTGCTGCTGCCGTAGG 62.765 66.667 25.44 0.00 46.70 3.18
3172 3280 6.779860 AGGGTAAATTATCGCATTAGGTCAT 58.220 36.000 0.00 0.00 0.00 3.06
3229 3350 0.387239 CAAAGCTTTGGCGTAGTGGC 60.387 55.000 28.12 0.00 44.37 5.01
3341 3464 2.009051 CTTGACTTGCGCCATCATACA 58.991 47.619 4.18 0.00 0.00 2.29
3380 3503 0.391661 TTGCAAGGAGAGTGATCCGC 60.392 55.000 0.00 0.00 44.65 5.54
3404 3527 6.202937 CAAGTGCTGTGGTATTTTCGTTTTA 58.797 36.000 0.00 0.00 0.00 1.52
3440 3568 7.163441 GGAGATGGTACCTTTGTTTGTAACTA 58.837 38.462 14.36 0.00 0.00 2.24
3462 3590 8.842358 ACTATTCTTCAAATTTGACTAACGGA 57.158 30.769 20.35 9.07 36.83 4.69
3463 3591 9.280174 ACTATTCTTCAAATTTGACTAACGGAA 57.720 29.630 20.35 15.77 36.83 4.30
3468 3596 9.226606 TCTTCAAATTTGACTAACGGAATATGT 57.773 29.630 20.35 0.00 36.83 2.29
3469 3597 9.277565 CTTCAAATTTGACTAACGGAATATGTG 57.722 33.333 20.35 0.00 36.83 3.21
3470 3598 7.247728 TCAAATTTGACTAACGGAATATGTGC 58.752 34.615 16.91 0.00 31.01 4.57
3502 3654 6.430000 ACACAAATAATGTCTTTAGGTTCGCT 59.570 34.615 0.00 0.00 41.46 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 2.265739 GGAGATGTGTCGCCTGCA 59.734 61.111 0.00 0.00 40.76 4.41
230 231 0.962489 CTCCATATTCCGCTCCTCGT 59.038 55.000 0.00 0.00 36.19 4.18
555 556 1.920835 GGGGAACTCTGAGGCTGGT 60.921 63.158 9.85 0.00 0.00 4.00
935 964 2.363147 GGCTCCTCCTCCGTCACT 60.363 66.667 0.00 0.00 0.00 3.41
1138 1167 5.443185 AATTAATCACTGATTGATGGGCG 57.557 39.130 13.66 0.00 44.86 6.13
1170 1199 5.183014 AGAATGGAAGGAAACGAACAAAC 57.817 39.130 0.00 0.00 0.00 2.93
1196 1225 6.042437 AGCATTGAAGAAAGTTTCCCAGAATT 59.958 34.615 12.05 0.00 0.00 2.17
1257 1286 9.224267 CAAGGATCATATGGACGAATAAATTCT 57.776 33.333 2.13 0.00 34.69 2.40
1263 1292 7.279615 ACAAACAAGGATCATATGGACGAATA 58.720 34.615 2.13 0.00 0.00 1.75
1282 1314 5.769162 TGACCATCATCATGAGAAACAAACA 59.231 36.000 0.09 0.00 30.57 2.83
1293 1325 3.219281 TCCTGCATTGACCATCATCATG 58.781 45.455 0.00 0.00 0.00 3.07
1303 1336 3.806380 ACTCTCATCATCCTGCATTGAC 58.194 45.455 0.00 0.00 0.00 3.18
1306 1339 3.710165 TCAGACTCTCATCATCCTGCATT 59.290 43.478 0.00 0.00 0.00 3.56
1434 1468 8.316946 TCAGATAGTTAATTGGCAGATGGATAG 58.683 37.037 0.00 0.00 0.00 2.08
1452 1486 5.163364 ACAATTTCAGAGCCGATCAGATAGT 60.163 40.000 0.00 0.00 0.00 2.12
1453 1487 5.295950 ACAATTTCAGAGCCGATCAGATAG 58.704 41.667 0.00 0.00 0.00 2.08
1456 1490 3.616956 ACAATTTCAGAGCCGATCAGA 57.383 42.857 0.00 0.00 0.00 3.27
1485 1519 2.164865 CTGGCTCCGCAGTCTCTGTT 62.165 60.000 0.00 0.00 33.43 3.16
1503 1537 0.398318 GGTTCAGCACCTTCACCTCT 59.602 55.000 0.00 0.00 43.29 3.69
1548 1582 1.997874 GATGGGCAGGACCAGGTCT 60.998 63.158 19.57 2.67 45.20 3.85
1642 1676 2.612212 ACACAATGTTGTTGGAGACGAC 59.388 45.455 0.00 0.00 45.61 4.34
1713 1747 1.675972 TTGGTGTGTGTGCGTGGTT 60.676 52.632 0.00 0.00 0.00 3.67
1719 1755 1.608109 TGATCATGTTGGTGTGTGTGC 59.392 47.619 0.00 0.00 0.00 4.57
1752 1792 9.265901 CGATCTAACAACCAGATAAAGAATGAT 57.734 33.333 0.00 0.00 32.86 2.45
1833 1874 9.736023 ATGTCACTTCAACAAATTTAAGAGAAC 57.264 29.630 5.62 2.39 0.00 3.01
1834 1875 9.950680 GATGTCACTTCAACAAATTTAAGAGAA 57.049 29.630 5.62 1.36 0.00 2.87
1835 1876 8.282592 CGATGTCACTTCAACAAATTTAAGAGA 58.717 33.333 5.62 1.18 0.00 3.10
1913 1955 8.644318 TTGACGTCTTAAATATTCCTAAGAGC 57.356 34.615 17.92 5.34 35.38 4.09
2021 2069 5.545723 CAGGAGGGAAATGTAGTATCTCCAT 59.454 44.000 0.00 0.00 41.09 3.41
2022 2070 4.901849 CAGGAGGGAAATGTAGTATCTCCA 59.098 45.833 0.00 0.00 41.09 3.86
2023 2071 4.284746 CCAGGAGGGAAATGTAGTATCTCC 59.715 50.000 0.00 0.00 40.01 3.71
2024 2072 5.148502 TCCAGGAGGGAAATGTAGTATCTC 58.851 45.833 0.00 0.00 44.80 2.75
2025 2073 5.157770 TCCAGGAGGGAAATGTAGTATCT 57.842 43.478 0.00 0.00 44.80 1.98
2052 2100 7.377928 GTCAATTTCAGCATCTTATACACATGC 59.622 37.037 0.00 0.00 42.81 4.06
2056 2104 7.426456 CGTTGTCAATTTCAGCATCTTATACAC 59.574 37.037 0.00 0.00 0.00 2.90
2224 2327 4.201783 CGGCGGATTAACTACTTGGAAAAG 60.202 45.833 0.00 0.00 0.00 2.27
2228 2331 1.826720 ACGGCGGATTAACTACTTGGA 59.173 47.619 13.24 0.00 0.00 3.53
2229 2332 2.304751 ACGGCGGATTAACTACTTGG 57.695 50.000 13.24 0.00 0.00 3.61
2230 2333 3.518590 AGAACGGCGGATTAACTACTTG 58.481 45.455 13.24 0.00 0.00 3.16
2239 2342 0.673644 CAACAGGAGAACGGCGGATT 60.674 55.000 13.24 0.00 0.00 3.01
2245 2348 0.588252 CAACTGCAACAGGAGAACGG 59.412 55.000 0.00 0.00 35.51 4.44
2246 2349 1.528586 CTCAACTGCAACAGGAGAACG 59.471 52.381 0.00 0.00 35.51 3.95
2251 2354 1.211703 TGGTTCTCAACTGCAACAGGA 59.788 47.619 0.00 0.00 35.51 3.86
2257 2360 3.071457 TCATCTTCTGGTTCTCAACTGCA 59.929 43.478 0.00 0.00 0.00 4.41
2320 2423 1.067495 GTGGTCTCTTCTTCACCCTCG 60.067 57.143 0.00 0.00 0.00 4.63
2422 2525 5.924475 AGAACAAAGTGATTAGTGGAACG 57.076 39.130 0.00 0.00 45.86 3.95
2833 2937 6.793349 AGTCGATCGGGTACATATAAATAGC 58.207 40.000 16.41 0.00 0.00 2.97
2937 3041 8.807948 AATTAAGAAGCAGTAATTAAGCTCCA 57.192 30.769 12.53 0.00 37.70 3.86
2938 3042 9.723447 GAAATTAAGAAGCAGTAATTAAGCTCC 57.277 33.333 12.53 2.43 37.70 4.70
2991 3096 5.587043 CCACAACACTCACTTGGTTTAACTA 59.413 40.000 0.00 0.00 0.00 2.24
3024 3129 5.392995 TCATTCCATTGTGAAAAAGGGAGA 58.607 37.500 0.00 0.00 40.80 3.71
3025 3130 5.726980 TCATTCCATTGTGAAAAAGGGAG 57.273 39.130 0.00 0.00 40.80 4.30
3027 3132 6.040209 TCATCATTCCATTGTGAAAAAGGG 57.960 37.500 0.00 0.00 32.18 3.95
3028 3133 7.065324 CCATTCATCATTCCATTGTGAAAAAGG 59.935 37.037 0.00 0.00 33.12 3.11
3037 3142 2.363038 ACGGCCATTCATCATTCCATTG 59.637 45.455 2.24 0.00 0.00 2.82
3038 3143 2.624838 GACGGCCATTCATCATTCCATT 59.375 45.455 2.24 0.00 0.00 3.16
3042 3147 3.489738 CCAAAGACGGCCATTCATCATTC 60.490 47.826 2.24 0.00 0.00 2.67
3082 3188 1.772063 AACAACTTGAGACGCACGCC 61.772 55.000 0.00 0.00 0.00 5.68
3105 3211 0.110192 GAGCAACGCAAACTAGTGCC 60.110 55.000 0.00 0.00 41.73 5.01
3115 3221 0.671472 CATCCAGTGAGAGCAACGCA 60.671 55.000 0.00 0.00 0.00 5.24
3135 3241 2.238847 TTACCCTACGGCAGCAGCAG 62.239 60.000 2.65 0.52 44.61 4.24
3145 3251 6.161381 ACCTAATGCGATAATTTACCCTACG 58.839 40.000 0.00 0.00 0.00 3.51
3147 3253 7.305813 TGACCTAATGCGATAATTTACCCTA 57.694 36.000 0.00 0.00 0.00 3.53
3148 3254 6.182507 TGACCTAATGCGATAATTTACCCT 57.817 37.500 0.00 0.00 0.00 4.34
3150 3256 9.988350 CATAATGACCTAATGCGATAATTTACC 57.012 33.333 0.00 0.00 0.00 2.85
3151 3257 9.988350 CCATAATGACCTAATGCGATAATTTAC 57.012 33.333 0.00 0.00 0.00 2.01
3152 3258 9.173021 CCCATAATGACCTAATGCGATAATTTA 57.827 33.333 0.00 0.00 0.00 1.40
3153 3259 7.888021 TCCCATAATGACCTAATGCGATAATTT 59.112 33.333 0.00 0.00 0.00 1.82
3172 3280 1.807742 CAAGAAAACGGCGTCCCATAA 59.192 47.619 15.17 0.00 0.00 1.90
3380 3503 3.896648 ACGAAAATACCACAGCACTTG 57.103 42.857 0.00 0.00 0.00 3.16
3452 3580 8.027189 GTCATATAGCACATATTCCGTTAGTCA 58.973 37.037 0.00 0.00 0.00 3.41
3453 3581 8.027189 TGTCATATAGCACATATTCCGTTAGTC 58.973 37.037 0.00 0.00 0.00 2.59
3454 3582 7.813148 GTGTCATATAGCACATATTCCGTTAGT 59.187 37.037 4.52 0.00 35.81 2.24
3455 3583 7.812669 TGTGTCATATAGCACATATTCCGTTAG 59.187 37.037 7.25 0.00 40.24 2.34
3456 3584 7.662897 TGTGTCATATAGCACATATTCCGTTA 58.337 34.615 7.25 0.00 40.24 3.18
3457 3585 6.521162 TGTGTCATATAGCACATATTCCGTT 58.479 36.000 7.25 0.00 40.24 4.44
3458 3586 6.096673 TGTGTCATATAGCACATATTCCGT 57.903 37.500 7.25 0.00 40.24 4.69
3459 3587 7.420184 TTTGTGTCATATAGCACATATTCCG 57.580 36.000 10.94 0.00 43.89 4.30
3465 3593 9.565090 AGACATTATTTGTGTCATATAGCACAT 57.435 29.630 10.94 2.70 46.46 3.21
3466 3594 8.962884 AGACATTATTTGTGTCATATAGCACA 57.037 30.769 8.73 7.25 46.46 4.57
3530 3682 9.402320 TGTAACATATGCCATAACAAATACAGT 57.598 29.630 1.58 0.00 0.00 3.55
3531 3683 9.663904 GTGTAACATATGCCATAACAAATACAG 57.336 33.333 1.58 0.00 36.32 2.74
3532 3684 9.178758 TGTGTAACATATGCCATAACAAATACA 57.821 29.630 1.58 0.00 45.67 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.