Multiple sequence alignment - TraesCS3B01G453800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G453800 chr3B 100.000 2641 0 0 1 2641 694786176 694783536 0.000000e+00 4878.0
1 TraesCS3B01G453800 chr3D 85.486 2067 141 68 288 2295 526173291 526171325 0.000000e+00 2008.0
2 TraesCS3B01G453800 chr3D 86.957 161 11 7 2481 2641 526171220 526171070 3.490000e-39 172.0
3 TraesCS3B01G453800 chr3D 93.651 63 2 2 2357 2418 526171302 526171241 2.800000e-15 93.5
4 TraesCS3B01G453800 chr3A 84.170 2072 177 82 310 2302 660270135 660268136 0.000000e+00 1869.0
5 TraesCS3B01G453800 chr3A 86.207 290 17 10 2357 2637 660268117 660267842 2.570000e-75 292.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G453800 chr3B 694783536 694786176 2640 True 4878.000000 4878 100.0000 1 2641 1 chr3B.!!$R1 2640
1 TraesCS3B01G453800 chr3D 526171070 526173291 2221 True 757.833333 2008 88.6980 288 2641 3 chr3D.!!$R1 2353
2 TraesCS3B01G453800 chr3A 660267842 660270135 2293 True 1080.500000 1869 85.1885 310 2637 2 chr3A.!!$R1 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 790 0.096281 TCGCGCGGCTTAATTGAAAG 59.904 50.0 31.69 0.0 0.0 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 2332 0.035343 TCAACAACAACACCGTCCCA 60.035 50.0 0.0 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.992180 TTCTTGTGAAAGAAAAATTCTCTGC 57.008 32.000 0.00 0.00 39.61 4.26
46 47 6.507023 TCTTGTGAAAGAAAAATTCTCTGCC 58.493 36.000 0.00 0.00 39.61 4.85
47 48 6.322201 TCTTGTGAAAGAAAAATTCTCTGCCT 59.678 34.615 0.00 0.00 39.61 4.75
48 49 6.469782 TGTGAAAGAAAAATTCTCTGCCTT 57.530 33.333 0.00 0.00 39.61 4.35
49 50 6.507023 TGTGAAAGAAAAATTCTCTGCCTTC 58.493 36.000 0.00 0.00 39.61 3.46
50 51 6.096705 TGTGAAAGAAAAATTCTCTGCCTTCA 59.903 34.615 0.00 0.00 39.61 3.02
51 52 6.980397 GTGAAAGAAAAATTCTCTGCCTTCAA 59.020 34.615 6.00 0.00 39.61 2.69
52 53 7.654923 GTGAAAGAAAAATTCTCTGCCTTCAAT 59.345 33.333 6.00 0.00 39.61 2.57
53 54 8.859090 TGAAAGAAAAATTCTCTGCCTTCAATA 58.141 29.630 0.00 0.00 39.61 1.90
54 55 9.696917 GAAAGAAAAATTCTCTGCCTTCAATAA 57.303 29.630 0.00 0.00 39.61 1.40
86 87 9.932699 TGATATGTAAAAACGTTCTTTCGAAAA 57.067 25.926 12.41 0.54 34.70 2.29
89 90 8.898983 ATGTAAAAACGTTCTTTCGAAAAGAA 57.101 26.923 12.41 13.80 37.01 2.52
90 91 8.725212 TGTAAAAACGTTCTTTCGAAAAGAAA 57.275 26.923 12.41 4.18 45.76 2.52
91 92 9.178427 TGTAAAAACGTTCTTTCGAAAAGAAAA 57.822 25.926 12.41 1.75 46.98 2.29
92 93 9.992384 GTAAAAACGTTCTTTCGAAAAGAAAAA 57.008 25.926 12.41 0.00 46.98 1.94
94 95 8.510132 AAAACGTTCTTTCGAAAAGAAAAAGA 57.490 26.923 12.41 0.49 46.98 2.52
95 96 7.488537 AACGTTCTTTCGAAAAGAAAAAGAC 57.511 32.000 12.41 5.78 46.98 3.01
96 97 6.604930 ACGTTCTTTCGAAAAGAAAAAGACA 58.395 32.000 12.41 0.00 46.98 3.41
97 98 7.079475 ACGTTCTTTCGAAAAGAAAAAGACAA 58.921 30.769 12.41 0.00 46.98 3.18
98 99 7.592164 ACGTTCTTTCGAAAAGAAAAAGACAAA 59.408 29.630 12.41 0.00 46.98 2.83
99 100 8.096109 CGTTCTTTCGAAAAGAAAAAGACAAAG 58.904 33.333 12.41 0.00 46.98 2.77
100 101 8.373256 GTTCTTTCGAAAAGAAAAAGACAAAGG 58.627 33.333 12.41 0.00 46.98 3.11
101 102 7.822658 TCTTTCGAAAAGAAAAAGACAAAGGA 58.177 30.769 12.41 0.00 46.98 3.36
102 103 8.301002 TCTTTCGAAAAGAAAAAGACAAAGGAA 58.699 29.630 12.41 0.00 46.98 3.36
103 104 8.819643 TTTCGAAAAGAAAAAGACAAAGGAAA 57.180 26.923 8.44 0.00 45.05 3.13
104 105 8.819643 TTCGAAAAGAAAAAGACAAAGGAAAA 57.180 26.923 0.00 0.00 35.61 2.29
105 106 8.460831 TCGAAAAGAAAAAGACAAAGGAAAAG 57.539 30.769 0.00 0.00 0.00 2.27
106 107 8.085909 TCGAAAAGAAAAAGACAAAGGAAAAGT 58.914 29.630 0.00 0.00 0.00 2.66
107 108 8.708742 CGAAAAGAAAAAGACAAAGGAAAAGTT 58.291 29.630 0.00 0.00 0.00 2.66
108 109 9.811655 GAAAAGAAAAAGACAAAGGAAAAGTTG 57.188 29.630 0.00 0.00 0.00 3.16
109 110 8.902540 AAAGAAAAAGACAAAGGAAAAGTTGT 57.097 26.923 0.00 0.00 40.61 3.32
110 111 9.990360 AAAGAAAAAGACAAAGGAAAAGTTGTA 57.010 25.926 0.00 0.00 38.07 2.41
117 118 9.588096 AAGACAAAGGAAAAGTTGTATAATCCT 57.412 29.630 0.00 0.00 38.07 3.24
118 119 9.014297 AGACAAAGGAAAAGTTGTATAATCCTG 57.986 33.333 0.00 0.00 38.07 3.86
119 120 8.706322 ACAAAGGAAAAGTTGTATAATCCTGT 57.294 30.769 0.00 0.00 37.37 4.00
120 121 9.143155 ACAAAGGAAAAGTTGTATAATCCTGTT 57.857 29.630 0.00 0.00 37.37 3.16
121 122 9.981114 CAAAGGAAAAGTTGTATAATCCTGTTT 57.019 29.630 0.00 0.00 37.37 2.83
128 129 7.611213 AGTTGTATAATCCTGTTTAGTGTGC 57.389 36.000 0.00 0.00 0.00 4.57
129 130 7.165485 AGTTGTATAATCCTGTTTAGTGTGCA 58.835 34.615 0.00 0.00 0.00 4.57
130 131 7.829211 AGTTGTATAATCCTGTTTAGTGTGCAT 59.171 33.333 0.00 0.00 0.00 3.96
131 132 7.552458 TGTATAATCCTGTTTAGTGTGCATG 57.448 36.000 0.00 0.00 0.00 4.06
132 133 3.855689 AATCCTGTTTAGTGTGCATGC 57.144 42.857 11.82 11.82 0.00 4.06
133 134 2.566833 TCCTGTTTAGTGTGCATGCT 57.433 45.000 20.33 0.00 0.00 3.79
134 135 2.153645 TCCTGTTTAGTGTGCATGCTG 58.846 47.619 20.33 0.00 0.00 4.41
135 136 2.153645 CCTGTTTAGTGTGCATGCTGA 58.846 47.619 20.33 1.72 0.00 4.26
136 137 2.751259 CCTGTTTAGTGTGCATGCTGAT 59.249 45.455 20.33 4.91 0.00 2.90
137 138 3.427098 CCTGTTTAGTGTGCATGCTGATG 60.427 47.826 20.33 0.00 0.00 3.07
138 139 3.410508 TGTTTAGTGTGCATGCTGATGA 58.589 40.909 20.33 0.00 0.00 2.92
139 140 3.819902 TGTTTAGTGTGCATGCTGATGAA 59.180 39.130 20.33 5.07 0.00 2.57
140 141 4.460034 TGTTTAGTGTGCATGCTGATGAAT 59.540 37.500 20.33 1.08 0.00 2.57
141 142 4.888038 TTAGTGTGCATGCTGATGAATC 57.112 40.909 20.33 1.18 0.00 2.52
142 143 2.718563 AGTGTGCATGCTGATGAATCA 58.281 42.857 20.33 2.77 35.16 2.57
143 144 2.422479 AGTGTGCATGCTGATGAATCAC 59.578 45.455 20.33 13.45 32.50 3.06
144 145 1.399089 TGTGCATGCTGATGAATCACG 59.601 47.619 20.33 0.00 32.50 4.35
145 146 1.667212 GTGCATGCTGATGAATCACGA 59.333 47.619 20.33 0.00 32.50 4.35
146 147 1.667212 TGCATGCTGATGAATCACGAC 59.333 47.619 20.33 0.00 32.50 4.34
147 148 1.667212 GCATGCTGATGAATCACGACA 59.333 47.619 11.37 0.00 32.50 4.35
148 149 2.096335 GCATGCTGATGAATCACGACAA 59.904 45.455 11.37 0.00 32.50 3.18
149 150 3.426560 GCATGCTGATGAATCACGACAAA 60.427 43.478 11.37 0.00 32.50 2.83
150 151 4.732647 GCATGCTGATGAATCACGACAAAT 60.733 41.667 11.37 0.00 32.50 2.32
151 152 5.337554 CATGCTGATGAATCACGACAAATT 58.662 37.500 0.00 0.00 32.50 1.82
152 153 4.973396 TGCTGATGAATCACGACAAATTC 58.027 39.130 0.00 0.00 32.50 2.17
160 161 2.553770 CGACAAATTCGCCGCACA 59.446 55.556 0.00 0.00 41.87 4.57
161 162 1.134487 CGACAAATTCGCCGCACAT 59.866 52.632 0.00 0.00 41.87 3.21
162 163 0.371989 CGACAAATTCGCCGCACATA 59.628 50.000 0.00 0.00 41.87 2.29
163 164 1.003972 CGACAAATTCGCCGCACATAT 60.004 47.619 0.00 0.00 41.87 1.78
164 165 2.219903 CGACAAATTCGCCGCACATATA 59.780 45.455 0.00 0.00 41.87 0.86
165 166 3.302805 CGACAAATTCGCCGCACATATAA 60.303 43.478 0.00 0.00 41.87 0.98
166 167 4.593157 GACAAATTCGCCGCACATATAAA 58.407 39.130 0.00 0.00 0.00 1.40
167 168 5.181690 ACAAATTCGCCGCACATATAAAT 57.818 34.783 0.00 0.00 0.00 1.40
168 169 4.975502 ACAAATTCGCCGCACATATAAATG 59.024 37.500 0.00 0.00 39.17 2.32
183 184 7.665690 ACATATAAATGTGTTTTTGTCAGCCA 58.334 30.769 0.00 0.00 44.79 4.75
184 185 7.598493 ACATATAAATGTGTTTTTGTCAGCCAC 59.402 33.333 0.00 0.00 44.79 5.01
185 186 3.883830 AATGTGTTTTTGTCAGCCACA 57.116 38.095 0.00 0.00 40.02 4.17
186 187 4.405116 AATGTGTTTTTGTCAGCCACAT 57.595 36.364 0.00 0.00 45.81 3.21
187 188 3.162202 TGTGTTTTTGTCAGCCACATG 57.838 42.857 0.00 0.00 33.90 3.21
188 189 2.495270 TGTGTTTTTGTCAGCCACATGT 59.505 40.909 0.00 0.00 33.90 3.21
189 190 3.115554 GTGTTTTTGTCAGCCACATGTC 58.884 45.455 0.00 0.00 33.90 3.06
190 191 2.223456 TGTTTTTGTCAGCCACATGTCG 60.223 45.455 0.00 0.00 33.90 4.35
191 192 1.960417 TTTTGTCAGCCACATGTCGA 58.040 45.000 0.00 0.00 33.90 4.20
192 193 1.225855 TTTGTCAGCCACATGTCGAC 58.774 50.000 9.11 9.11 33.90 4.20
193 194 0.943835 TTGTCAGCCACATGTCGACG 60.944 55.000 11.62 0.00 33.90 5.12
194 195 1.080772 GTCAGCCACATGTCGACGA 60.081 57.895 11.62 0.00 0.00 4.20
195 196 1.080772 TCAGCCACATGTCGACGAC 60.081 57.895 20.97 20.97 0.00 4.34
196 197 1.372872 CAGCCACATGTCGACGACA 60.373 57.895 30.90 30.90 46.90 4.35
197 198 1.080501 AGCCACATGTCGACGACAG 60.081 57.895 31.72 24.76 46.04 3.51
198 199 1.080772 GCCACATGTCGACGACAGA 60.081 57.895 31.72 13.24 46.04 3.41
199 200 1.073216 GCCACATGTCGACGACAGAG 61.073 60.000 31.72 27.27 46.04 3.35
200 201 0.241213 CCACATGTCGACGACAGAGT 59.759 55.000 31.72 27.84 46.04 3.24
201 202 1.331241 CACATGTCGACGACAGAGTG 58.669 55.000 32.95 32.95 46.04 3.51
202 203 0.952280 ACATGTCGACGACAGAGTGT 59.048 50.000 31.72 27.20 46.04 3.55
203 204 1.069159 ACATGTCGACGACAGAGTGTC 60.069 52.381 31.72 3.95 46.04 3.67
212 213 2.181426 GACAGAGTGTCGGAGAATCG 57.819 55.000 0.00 0.00 39.69 3.34
213 214 1.738350 GACAGAGTGTCGGAGAATCGA 59.262 52.381 0.00 0.00 39.69 3.59
214 215 2.160205 ACAGAGTGTCGGAGAATCGAA 58.840 47.619 0.00 0.00 41.05 3.71
215 216 2.095161 ACAGAGTGTCGGAGAATCGAAC 60.095 50.000 0.00 0.00 41.05 3.95
216 217 2.162608 CAGAGTGTCGGAGAATCGAACT 59.837 50.000 0.00 0.00 41.05 3.01
217 218 2.820787 AGAGTGTCGGAGAATCGAACTT 59.179 45.455 0.00 0.00 41.05 2.66
218 219 2.917971 GAGTGTCGGAGAATCGAACTTG 59.082 50.000 0.00 0.00 41.05 3.16
219 220 1.390463 GTGTCGGAGAATCGAACTTGC 59.610 52.381 0.00 0.00 41.05 4.01
220 221 1.000394 TGTCGGAGAATCGAACTTGCA 60.000 47.619 0.00 0.00 41.05 4.08
221 222 2.271800 GTCGGAGAATCGAACTTGCAT 58.728 47.619 0.00 0.00 41.05 3.96
222 223 3.119280 TGTCGGAGAATCGAACTTGCATA 60.119 43.478 0.00 0.00 41.05 3.14
223 224 3.243177 GTCGGAGAATCGAACTTGCATAC 59.757 47.826 0.00 0.00 41.05 2.39
224 225 2.216488 CGGAGAATCGAACTTGCATACG 59.784 50.000 0.00 0.00 34.37 3.06
225 226 3.187700 GGAGAATCGAACTTGCATACGT 58.812 45.455 0.00 0.00 34.37 3.57
226 227 3.617263 GGAGAATCGAACTTGCATACGTT 59.383 43.478 0.00 0.00 34.37 3.99
227 228 4.802039 GGAGAATCGAACTTGCATACGTTA 59.198 41.667 0.00 0.00 34.37 3.18
228 229 5.276254 GGAGAATCGAACTTGCATACGTTAC 60.276 44.000 0.00 0.00 34.37 2.50
229 230 5.165676 AGAATCGAACTTGCATACGTTACA 58.834 37.500 0.00 0.00 0.00 2.41
230 231 5.810587 AGAATCGAACTTGCATACGTTACAT 59.189 36.000 0.00 0.00 0.00 2.29
231 232 6.312918 AGAATCGAACTTGCATACGTTACATT 59.687 34.615 0.00 0.00 0.00 2.71
232 233 5.849357 TCGAACTTGCATACGTTACATTT 57.151 34.783 0.00 0.00 0.00 2.32
233 234 6.230849 TCGAACTTGCATACGTTACATTTT 57.769 33.333 0.00 0.00 0.00 1.82
234 235 6.301108 TCGAACTTGCATACGTTACATTTTC 58.699 36.000 0.00 0.00 0.00 2.29
235 236 5.506832 CGAACTTGCATACGTTACATTTTCC 59.493 40.000 0.00 0.00 0.00 3.13
236 237 5.950758 ACTTGCATACGTTACATTTTCCA 57.049 34.783 0.00 0.00 0.00 3.53
237 238 6.509418 ACTTGCATACGTTACATTTTCCAT 57.491 33.333 0.00 0.00 0.00 3.41
238 239 6.551736 ACTTGCATACGTTACATTTTCCATC 58.448 36.000 0.00 0.00 0.00 3.51
239 240 6.374333 ACTTGCATACGTTACATTTTCCATCT 59.626 34.615 0.00 0.00 0.00 2.90
240 241 6.751514 TGCATACGTTACATTTTCCATCTT 57.248 33.333 0.00 0.00 0.00 2.40
241 242 7.851387 TGCATACGTTACATTTTCCATCTTA 57.149 32.000 0.00 0.00 0.00 2.10
242 243 7.690228 TGCATACGTTACATTTTCCATCTTAC 58.310 34.615 0.00 0.00 0.00 2.34
243 244 7.334671 TGCATACGTTACATTTTCCATCTTACA 59.665 33.333 0.00 0.00 0.00 2.41
244 245 8.342634 GCATACGTTACATTTTCCATCTTACAT 58.657 33.333 0.00 0.00 0.00 2.29
245 246 9.864034 CATACGTTACATTTTCCATCTTACATC 57.136 33.333 0.00 0.00 0.00 3.06
246 247 7.000575 ACGTTACATTTTCCATCTTACATCG 57.999 36.000 0.00 0.00 0.00 3.84
247 248 6.036735 ACGTTACATTTTCCATCTTACATCGG 59.963 38.462 0.00 0.00 0.00 4.18
248 249 6.036735 CGTTACATTTTCCATCTTACATCGGT 59.963 38.462 0.00 0.00 0.00 4.69
249 250 7.223193 CGTTACATTTTCCATCTTACATCGGTA 59.777 37.037 0.00 0.00 0.00 4.02
250 251 8.885722 GTTACATTTTCCATCTTACATCGGTAA 58.114 33.333 0.00 0.00 37.15 2.85
251 252 7.316544 ACATTTTCCATCTTACATCGGTAAC 57.683 36.000 0.00 0.00 34.63 2.50
271 272 8.593492 GGTAACGGACTTTTTCTTAAGAGTAA 57.407 34.615 5.12 1.94 29.56 2.24
272 273 9.212641 GGTAACGGACTTTTTCTTAAGAGTAAT 57.787 33.333 5.12 0.00 29.56 1.89
274 275 8.672823 AACGGACTTTTTCTTAAGAGTAATGT 57.327 30.769 5.12 11.56 29.56 2.71
275 276 8.084590 ACGGACTTTTTCTTAAGAGTAATGTG 57.915 34.615 17.84 11.27 29.56 3.21
276 277 7.015877 CGGACTTTTTCTTAAGAGTAATGTGC 58.984 38.462 17.84 18.30 29.56 4.57
277 278 7.307751 CGGACTTTTTCTTAAGAGTAATGTGCA 60.308 37.037 23.17 0.00 29.56 4.57
278 279 8.515414 GGACTTTTTCTTAAGAGTAATGTGCAT 58.485 33.333 21.12 5.95 29.56 3.96
279 280 9.548208 GACTTTTTCTTAAGAGTAATGTGCATC 57.452 33.333 17.84 7.06 29.56 3.91
280 281 9.066892 ACTTTTTCTTAAGAGTAATGTGCATCA 57.933 29.630 5.12 0.00 27.74 3.07
281 282 9.334693 CTTTTTCTTAAGAGTAATGTGCATCAC 57.665 33.333 5.12 0.00 34.56 3.06
296 297 5.647658 TGTGCATCACAACTTTATAGAAGGG 59.352 40.000 0.00 0.00 41.69 3.95
298 299 6.543831 GTGCATCACAACTTTATAGAAGGGAT 59.456 38.462 0.00 0.00 34.08 3.85
326 327 9.376075 TCAATTATTTTTGAAAGCTGTGTTTGA 57.624 25.926 0.00 0.00 32.82 2.69
426 428 1.066143 ACAAAAGATGCCGATCGAGGT 60.066 47.619 18.66 0.68 33.34 3.85
480 482 0.729116 CCATCACATCACACTTCCGC 59.271 55.000 0.00 0.00 0.00 5.54
481 483 1.676916 CCATCACATCACACTTCCGCT 60.677 52.381 0.00 0.00 0.00 5.52
496 500 3.410958 GCTCCTCGCGGAATTTCC 58.589 61.111 6.13 5.28 39.29 3.13
557 562 3.388024 TCCTGCAACATACTGTATCCTCC 59.612 47.826 0.00 0.00 0.00 4.30
558 563 3.384668 CTGCAACATACTGTATCCTCCG 58.615 50.000 0.00 0.00 0.00 4.63
609 617 0.879400 GGCATCGATCAGACCAGCTG 60.879 60.000 6.78 6.78 46.31 4.24
621 629 2.093973 AGACCAGCTGAAACACGATAGG 60.094 50.000 17.39 0.00 43.77 2.57
622 630 1.009829 CCAGCTGAAACACGATAGGC 58.990 55.000 17.39 0.00 43.77 3.93
632 647 1.135139 ACACGATAGGCAGCAGTAGTG 59.865 52.381 0.00 0.18 43.77 2.74
644 659 2.879462 GTAGTGGCGCCGAGAACG 60.879 66.667 23.90 0.00 39.43 3.95
738 754 2.842394 AATCGCGAGTCCACCAGCTG 62.842 60.000 16.66 6.78 0.00 4.24
739 755 4.056125 CGCGAGTCCACCAGCTGA 62.056 66.667 17.39 0.00 0.00 4.26
741 757 1.812922 GCGAGTCCACCAGCTGATG 60.813 63.158 17.39 8.67 0.00 3.07
742 758 1.812922 CGAGTCCACCAGCTGATGC 60.813 63.158 17.39 0.00 40.05 3.91
743 759 1.812922 GAGTCCACCAGCTGATGCG 60.813 63.158 17.39 2.34 45.42 4.73
744 760 2.230994 GAGTCCACCAGCTGATGCGA 62.231 60.000 17.39 5.11 45.42 5.10
770 786 1.004398 TGTTATCGCGCGGCTTAATTG 60.004 47.619 31.69 0.00 0.00 2.32
774 790 0.096281 TCGCGCGGCTTAATTGAAAG 59.904 50.000 31.69 0.00 0.00 2.62
823 848 6.518208 AATAAATTAAAACGCTGGCAGGTA 57.482 33.333 17.64 0.00 0.00 3.08
867 907 5.568825 CGTCCATCCCCGTAGATTATTTCAT 60.569 44.000 0.00 0.00 0.00 2.57
913 959 5.250200 TGTTCGGTTACCTCAATTATTGCT 58.750 37.500 0.00 0.00 0.00 3.91
918 964 5.558273 CGGTTACCTCAATTATTGCTAAGCG 60.558 44.000 17.74 17.74 33.70 4.68
919 965 5.296035 GGTTACCTCAATTATTGCTAAGCGT 59.704 40.000 0.00 0.00 0.00 5.07
920 966 6.419771 GTTACCTCAATTATTGCTAAGCGTC 58.580 40.000 0.00 0.00 0.00 5.19
921 967 4.770795 ACCTCAATTATTGCTAAGCGTCT 58.229 39.130 0.00 0.00 0.00 4.18
922 968 4.811557 ACCTCAATTATTGCTAAGCGTCTC 59.188 41.667 0.00 0.00 0.00 3.36
964 1010 3.958860 CATCCGCCCCCATCTCCC 61.959 72.222 0.00 0.00 0.00 4.30
1249 1298 3.617735 TCGGCCTGCGGTACAACA 61.618 61.111 0.00 0.00 0.00 3.33
1251 1300 2.461110 CGGCCTGCGGTACAACATC 61.461 63.158 0.00 0.00 0.00 3.06
1260 1309 1.632046 GGTACAACATCACCGTGGCG 61.632 60.000 0.00 0.00 0.00 5.69
1275 1324 2.746359 GCGGGGCAGATCAGCTAT 59.254 61.111 10.16 0.00 34.17 2.97
1317 1366 1.681327 GGTGGACGCTCAGGACCTA 60.681 63.158 0.00 0.00 0.00 3.08
1320 1369 1.207329 GTGGACGCTCAGGACCTATTT 59.793 52.381 0.00 0.00 0.00 1.40
1480 1529 1.278985 TCCTGCAACCACATCAGGTAG 59.721 52.381 7.31 0.00 45.67 3.18
1482 1531 0.399833 TGCAACCACATCAGGTAGCA 59.600 50.000 0.00 0.00 42.25 3.49
1502 1551 3.602483 CACCATCGCATCATCCATGATA 58.398 45.455 1.64 0.00 45.23 2.15
1597 1649 2.280186 GTCGCCGCAGATTAGGGG 60.280 66.667 0.00 0.00 43.92 4.79
1646 1698 1.981254 CGTTGCAACAATGATGGGAC 58.019 50.000 28.01 0.00 0.00 4.46
1647 1699 1.728825 CGTTGCAACAATGATGGGACG 60.729 52.381 28.01 7.56 0.00 4.79
1648 1700 0.887247 TTGCAACAATGATGGGACGG 59.113 50.000 0.00 0.00 0.00 4.79
1649 1701 0.037447 TGCAACAATGATGGGACGGA 59.963 50.000 0.00 0.00 0.00 4.69
1650 1702 1.340893 TGCAACAATGATGGGACGGAT 60.341 47.619 0.00 0.00 0.00 4.18
1651 1703 1.750778 GCAACAATGATGGGACGGATT 59.249 47.619 0.00 0.00 0.00 3.01
1652 1704 2.223572 GCAACAATGATGGGACGGATTC 60.224 50.000 0.00 0.00 0.00 2.52
1653 1705 2.348411 ACAATGATGGGACGGATTCC 57.652 50.000 0.00 0.00 45.00 3.01
1674 1726 1.640428 TGATTTCATCGTGGAGACGC 58.360 50.000 0.00 0.00 45.68 5.19
1675 1727 1.067213 TGATTTCATCGTGGAGACGCA 60.067 47.619 0.00 0.00 45.68 5.24
1751 1803 4.378978 CGGCTAGTGTGCAGATAGATAGAC 60.379 50.000 0.00 0.00 34.04 2.59
1762 1814 5.278512 GCAGATAGATAGACGTGGTCATTCA 60.279 44.000 0.00 0.00 34.60 2.57
1765 1817 7.328005 CAGATAGATAGACGTGGTCATTCATTG 59.672 40.741 0.00 0.00 34.60 2.82
1774 1826 4.320129 CGTGGTCATTCATTGTGTTTGCTA 60.320 41.667 0.00 0.00 0.00 3.49
1779 1831 4.754618 TCATTCATTGTGTTTGCTACTCGT 59.245 37.500 0.00 0.00 0.00 4.18
1799 1851 2.564947 GTCACCTCATCACTCTGTTCCT 59.435 50.000 0.00 0.00 0.00 3.36
1803 1860 2.416566 CCTCATCACTCTGTTCCTGTCG 60.417 54.545 0.00 0.00 0.00 4.35
1816 1873 0.314302 CCTGTCGTCGTTCTTGTCCT 59.686 55.000 0.00 0.00 0.00 3.85
1876 1937 2.753043 TGTACTCCTCCGGCGTCC 60.753 66.667 6.01 0.00 0.00 4.79
1895 1956 2.014128 CCGGCCGACTGTCATATTTTT 58.986 47.619 30.73 0.00 0.00 1.94
1913 1974 6.773976 ATTTTTCACGGTAATGGATGATGT 57.226 33.333 0.00 0.00 0.00 3.06
1914 1975 5.559427 TTTTCACGGTAATGGATGATGTG 57.441 39.130 0.00 0.00 0.00 3.21
1916 1977 5.346181 TTCACGGTAATGGATGATGTGTA 57.654 39.130 0.00 0.00 0.00 2.90
1917 1978 4.944048 TCACGGTAATGGATGATGTGTAG 58.056 43.478 0.00 0.00 0.00 2.74
1966 2032 3.437213 TCCTGATCTTCGTTGGGTTCTA 58.563 45.455 0.00 0.00 0.00 2.10
1977 2043 7.929785 TCTTCGTTGGGTTCTACATATTATTCC 59.070 37.037 0.00 0.00 0.00 3.01
1985 2051 8.532819 GGGTTCTACATATTATTCCTCGAATCT 58.467 37.037 0.00 0.00 33.95 2.40
1996 2062 4.448720 TCCTCGAATCTAGGGTGATACA 57.551 45.455 0.72 0.00 34.66 2.29
2006 2072 0.246635 GGGTGATACAGCGTCAGTGT 59.753 55.000 0.00 0.00 32.08 3.55
2011 2077 3.741344 GTGATACAGCGTCAGTGTCTTTT 59.259 43.478 0.00 0.00 0.00 2.27
2053 2119 5.309638 TGTCAAATCCAACCGAACTGAATA 58.690 37.500 0.00 0.00 0.00 1.75
2061 2127 4.324267 CAACCGAACTGAATAGTCCCTTT 58.676 43.478 0.00 0.00 35.69 3.11
2062 2128 3.939066 ACCGAACTGAATAGTCCCTTTG 58.061 45.455 0.00 0.00 35.69 2.77
2064 2130 2.678336 CGAACTGAATAGTCCCTTTGCC 59.322 50.000 0.00 0.00 35.69 4.52
2065 2131 3.686016 GAACTGAATAGTCCCTTTGCCA 58.314 45.455 0.00 0.00 35.69 4.92
2078 2164 1.433053 TTTGCCAGGAACGTGTCGTG 61.433 55.000 11.15 11.15 39.99 4.35
2079 2165 2.028484 GCCAGGAACGTGTCGTGA 59.972 61.111 16.60 0.00 43.50 4.35
2140 2226 2.106074 GTGTGATGGATTCGCCGCA 61.106 57.895 0.00 0.00 40.66 5.69
2151 2237 3.918220 CGCCGCAGCATCTCGTTC 61.918 66.667 0.00 0.00 39.83 3.95
2166 2268 2.615447 CTCGTTCCCATTCACCATGATG 59.385 50.000 0.00 0.00 34.31 3.07
2185 2287 1.967779 TGTGAAAGGGATCAGTCACGA 59.032 47.619 0.00 0.00 42.66 4.35
2186 2288 2.367241 TGTGAAAGGGATCAGTCACGAA 59.633 45.455 0.00 0.00 42.66 3.85
2189 2291 0.976641 AAGGGATCAGTCACGAAGCA 59.023 50.000 0.00 0.00 31.21 3.91
2190 2292 0.534412 AGGGATCAGTCACGAAGCAG 59.466 55.000 0.00 0.00 31.21 4.24
2191 2293 0.247736 GGGATCAGTCACGAAGCAGT 59.752 55.000 0.00 0.00 0.00 4.40
2192 2294 1.354040 GGATCAGTCACGAAGCAGTG 58.646 55.000 0.00 1.25 43.11 3.66
2193 2295 1.337260 GGATCAGTCACGAAGCAGTGT 60.337 52.381 0.00 0.00 42.40 3.55
2214 2316 2.093106 AGTCAATCTAGCTCGGTTCGT 58.907 47.619 0.00 0.00 0.00 3.85
2216 2318 3.056749 AGTCAATCTAGCTCGGTTCGTTT 60.057 43.478 0.00 0.00 0.00 3.60
2218 2320 3.924686 TCAATCTAGCTCGGTTCGTTTTC 59.075 43.478 0.00 0.00 0.00 2.29
2222 2324 4.374399 TCTAGCTCGGTTCGTTTTCTTTT 58.626 39.130 0.00 0.00 0.00 2.27
2224 2326 3.948851 AGCTCGGTTCGTTTTCTTTTTC 58.051 40.909 0.00 0.00 0.00 2.29
2230 2332 7.166970 GCTCGGTTCGTTTTCTTTTTCTTTTAT 59.833 33.333 0.00 0.00 0.00 1.40
2231 2333 8.330302 TCGGTTCGTTTTCTTTTTCTTTTATG 57.670 30.769 0.00 0.00 0.00 1.90
2233 2335 7.306341 CGGTTCGTTTTCTTTTTCTTTTATGGG 60.306 37.037 0.00 0.00 0.00 4.00
2240 2343 5.134661 TCTTTTTCTTTTATGGGACGGTGT 58.865 37.500 0.00 0.00 0.00 4.16
2243 2346 3.495434 TCTTTTATGGGACGGTGTTGT 57.505 42.857 0.00 0.00 0.00 3.32
2252 2355 1.741145 GGACGGTGTTGTTGTTGACTT 59.259 47.619 0.00 0.00 0.00 3.01
2253 2356 2.477189 GGACGGTGTTGTTGTTGACTTG 60.477 50.000 0.00 0.00 0.00 3.16
2263 2366 5.826601 TGTTGTTGACTTGTGCAATTCTA 57.173 34.783 0.00 0.00 0.00 2.10
2276 2379 5.295787 TGTGCAATTCTAACATCCCGATTAC 59.704 40.000 0.00 0.00 0.00 1.89
2277 2380 5.527582 GTGCAATTCTAACATCCCGATTACT 59.472 40.000 0.00 0.00 0.00 2.24
2278 2381 6.704493 GTGCAATTCTAACATCCCGATTACTA 59.296 38.462 0.00 0.00 0.00 1.82
2281 2384 7.602644 GCAATTCTAACATCCCGATTACTATGA 59.397 37.037 0.00 0.00 0.00 2.15
2283 2386 9.712305 AATTCTAACATCCCGATTACTATGAAG 57.288 33.333 0.00 0.00 0.00 3.02
2287 2390 9.712305 CTAACATCCCGATTACTATGAAGAAAT 57.288 33.333 0.00 0.00 0.00 2.17
2289 2392 9.490379 AACATCCCGATTACTATGAAGAAATAC 57.510 33.333 0.00 0.00 0.00 1.89
2314 2419 8.769359 ACTAGTACTAGCAAATTTATCCACCTT 58.231 33.333 26.54 1.40 36.66 3.50
2315 2420 7.865706 AGTACTAGCAAATTTATCCACCTTG 57.134 36.000 0.00 0.00 0.00 3.61
2316 2421 6.828785 AGTACTAGCAAATTTATCCACCTTGG 59.171 38.462 0.00 0.00 39.43 3.61
2325 2430 3.475932 TCCACCTTGGAGTGCTAGT 57.524 52.632 0.00 0.00 42.67 2.57
2326 2431 2.615986 TCCACCTTGGAGTGCTAGTA 57.384 50.000 0.00 0.00 42.67 1.82
2327 2432 3.116096 TCCACCTTGGAGTGCTAGTAT 57.884 47.619 0.00 0.00 42.67 2.12
2328 2433 3.031736 TCCACCTTGGAGTGCTAGTATC 58.968 50.000 0.00 0.00 42.67 2.24
2329 2434 3.034635 CCACCTTGGAGTGCTAGTATCT 58.965 50.000 0.00 0.00 40.96 1.98
2330 2435 3.452627 CCACCTTGGAGTGCTAGTATCTT 59.547 47.826 0.00 0.00 40.96 2.40
2331 2436 4.649674 CCACCTTGGAGTGCTAGTATCTTA 59.350 45.833 0.00 0.00 40.96 2.10
2332 2437 5.128827 CCACCTTGGAGTGCTAGTATCTTAA 59.871 44.000 0.00 0.00 40.96 1.85
2333 2438 6.183361 CCACCTTGGAGTGCTAGTATCTTAAT 60.183 42.308 0.00 0.00 40.96 1.40
2334 2439 6.703607 CACCTTGGAGTGCTAGTATCTTAATG 59.296 42.308 0.00 0.00 0.00 1.90
2335 2440 6.611642 ACCTTGGAGTGCTAGTATCTTAATGA 59.388 38.462 0.00 0.00 0.00 2.57
2336 2441 6.926272 CCTTGGAGTGCTAGTATCTTAATGAC 59.074 42.308 0.00 0.00 0.00 3.06
2337 2442 6.406692 TGGAGTGCTAGTATCTTAATGACC 57.593 41.667 0.00 0.00 0.00 4.02
2338 2443 5.304614 TGGAGTGCTAGTATCTTAATGACCC 59.695 44.000 0.00 0.00 0.00 4.46
2339 2444 5.455056 AGTGCTAGTATCTTAATGACCCG 57.545 43.478 0.00 0.00 0.00 5.28
2340 2445 4.894114 AGTGCTAGTATCTTAATGACCCGT 59.106 41.667 0.00 0.00 0.00 5.28
2341 2446 5.009811 AGTGCTAGTATCTTAATGACCCGTC 59.990 44.000 0.00 0.00 0.00 4.79
2342 2447 4.023450 TGCTAGTATCTTAATGACCCGTCG 60.023 45.833 0.00 0.00 0.00 5.12
2343 2448 4.023365 GCTAGTATCTTAATGACCCGTCGT 60.023 45.833 0.00 0.00 0.00 4.34
2344 2449 4.996788 AGTATCTTAATGACCCGTCGTT 57.003 40.909 7.42 7.42 41.32 3.85
2345 2450 4.679662 AGTATCTTAATGACCCGTCGTTG 58.320 43.478 11.68 0.00 39.04 4.10
2346 2451 1.717194 TCTTAATGACCCGTCGTTGC 58.283 50.000 11.68 0.00 39.04 4.17
2347 2452 0.368907 CTTAATGACCCGTCGTTGCG 59.631 55.000 11.68 0.61 39.04 4.85
2348 2453 0.319727 TTAATGACCCGTCGTTGCGT 60.320 50.000 11.68 0.00 39.04 5.24
2349 2454 1.009903 TAATGACCCGTCGTTGCGTG 61.010 55.000 11.68 0.00 39.04 5.34
2350 2455 2.981977 AATGACCCGTCGTTGCGTGT 62.982 55.000 1.51 0.00 37.43 4.49
2351 2456 3.698463 GACCCGTCGTTGCGTGTG 61.698 66.667 0.00 0.00 0.00 3.82
2352 2457 4.210093 ACCCGTCGTTGCGTGTGA 62.210 61.111 0.00 0.00 0.00 3.58
2353 2458 3.698463 CCCGTCGTTGCGTGTGAC 61.698 66.667 0.00 0.00 0.00 3.67
2356 2461 2.241537 GTCGTTGCGTGTGACGTG 59.758 61.111 0.00 0.00 44.73 4.49
2357 2462 2.102553 TCGTTGCGTGTGACGTGA 59.897 55.556 0.00 0.00 44.73 4.35
2360 2465 0.917648 CGTTGCGTGTGACGTGAAAC 60.918 55.000 0.00 0.00 44.73 2.78
2418 2524 2.475466 GGAGATCGCGGTGGTCGTA 61.475 63.158 6.13 0.00 41.72 3.43
2419 2525 1.298190 GAGATCGCGGTGGTCGTAC 60.298 63.158 6.13 0.00 41.72 3.67
2429 2537 1.670967 GGTGGTCGTACTAACTGCCAC 60.671 57.143 0.00 0.00 43.89 5.01
2436 2544 2.663119 CGTACTAACTGCCACGGTTAAC 59.337 50.000 0.00 0.00 35.20 2.01
2439 2547 3.917988 ACTAACTGCCACGGTTAACTAC 58.082 45.455 5.42 0.00 35.20 2.73
2440 2548 3.575687 ACTAACTGCCACGGTTAACTACT 59.424 43.478 5.42 0.00 35.20 2.57
2441 2549 4.766891 ACTAACTGCCACGGTTAACTACTA 59.233 41.667 5.42 0.00 35.20 1.82
2442 2550 3.582714 ACTGCCACGGTTAACTACTAC 57.417 47.619 5.42 0.00 0.00 2.73
2445 2553 2.162208 TGCCACGGTTAACTACTACTCG 59.838 50.000 5.42 1.16 0.00 4.18
2449 2557 2.680339 ACGGTTAACTACTACTCGAGCC 59.320 50.000 13.61 0.00 0.00 4.70
2466 2574 4.107051 CAAAAGCGCTCCGGCCAG 62.107 66.667 12.06 0.00 34.44 4.85
2476 2584 4.624364 CCGGCCAGCACACAGTCA 62.624 66.667 2.24 0.00 0.00 3.41
2498 2611 0.521242 GCAGTACGCAATCGCAAAGG 60.521 55.000 5.07 0.00 41.79 3.11
2499 2612 1.075542 CAGTACGCAATCGCAAAGGA 58.924 50.000 0.00 0.00 39.84 3.36
2510 2623 2.924105 GCAAAGGAGGCACTGGCAC 61.924 63.158 5.25 0.00 41.55 5.01
2524 2637 2.203070 GCACCTGGGCCATAGTCG 60.203 66.667 6.72 4.50 0.00 4.18
2525 2638 2.731571 GCACCTGGGCCATAGTCGA 61.732 63.158 6.72 0.00 0.00 4.20
2526 2639 1.144057 CACCTGGGCCATAGTCGAC 59.856 63.158 6.72 7.70 0.00 4.20
2527 2640 1.305802 ACCTGGGCCATAGTCGACA 60.306 57.895 19.50 4.13 0.00 4.35
2535 2648 1.914634 CCATAGTCGACACTCAGCAC 58.085 55.000 19.50 0.00 33.62 4.40
2536 2649 1.202348 CCATAGTCGACACTCAGCACA 59.798 52.381 19.50 0.00 33.62 4.57
2625 2738 4.699522 GGCAACGGCGAGGGAAGT 62.700 66.667 16.62 0.00 42.47 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.980397 GGCAGAGAATTTTTCTTTCACAAGAA 59.020 34.615 0.00 0.00 45.63 2.52
22 23 6.322201 AGGCAGAGAATTTTTCTTTCACAAGA 59.678 34.615 0.00 0.00 40.87 3.02
23 24 6.510536 AGGCAGAGAATTTTTCTTTCACAAG 58.489 36.000 0.00 0.00 40.87 3.16
24 25 6.469782 AGGCAGAGAATTTTTCTTTCACAA 57.530 33.333 0.00 0.00 40.87 3.33
25 26 6.096705 TGAAGGCAGAGAATTTTTCTTTCACA 59.903 34.615 0.00 0.00 40.87 3.58
26 27 6.507023 TGAAGGCAGAGAATTTTTCTTTCAC 58.493 36.000 0.00 0.00 40.87 3.18
27 28 6.713762 TGAAGGCAGAGAATTTTTCTTTCA 57.286 33.333 0.00 0.72 40.87 2.69
28 29 9.696917 TTATTGAAGGCAGAGAATTTTTCTTTC 57.303 29.630 0.00 0.00 40.87 2.62
76 77 7.822658 TCCTTTGTCTTTTTCTTTTCGAAAGA 58.177 30.769 10.98 8.14 42.22 2.52
77 78 8.460831 TTCCTTTGTCTTTTTCTTTTCGAAAG 57.539 30.769 10.98 5.92 42.22 2.62
78 79 8.819643 TTTCCTTTGTCTTTTTCTTTTCGAAA 57.180 26.923 6.47 6.47 39.76 3.46
79 80 8.819643 TTTTCCTTTGTCTTTTTCTTTTCGAA 57.180 26.923 0.00 0.00 0.00 3.71
80 81 8.085909 ACTTTTCCTTTGTCTTTTTCTTTTCGA 58.914 29.630 0.00 0.00 0.00 3.71
81 82 8.239681 ACTTTTCCTTTGTCTTTTTCTTTTCG 57.760 30.769 0.00 0.00 0.00 3.46
82 83 9.811655 CAACTTTTCCTTTGTCTTTTTCTTTTC 57.188 29.630 0.00 0.00 0.00 2.29
83 84 9.337396 ACAACTTTTCCTTTGTCTTTTTCTTTT 57.663 25.926 0.00 0.00 29.75 2.27
84 85 8.902540 ACAACTTTTCCTTTGTCTTTTTCTTT 57.097 26.923 0.00 0.00 29.75 2.52
91 92 9.588096 AGGATTATACAACTTTTCCTTTGTCTT 57.412 29.630 0.00 0.00 37.19 3.01
92 93 9.014297 CAGGATTATACAACTTTTCCTTTGTCT 57.986 33.333 0.00 0.00 37.19 3.41
93 94 8.793592 ACAGGATTATACAACTTTTCCTTTGTC 58.206 33.333 0.00 0.00 37.19 3.18
94 95 8.706322 ACAGGATTATACAACTTTTCCTTTGT 57.294 30.769 0.00 0.00 39.31 2.83
95 96 9.981114 AAACAGGATTATACAACTTTTCCTTTG 57.019 29.630 0.00 0.00 31.30 2.77
102 103 8.512138 GCACACTAAACAGGATTATACAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
103 104 7.663905 TGCACACTAAACAGGATTATACAACTT 59.336 33.333 0.00 0.00 0.00 2.66
104 105 7.165485 TGCACACTAAACAGGATTATACAACT 58.835 34.615 0.00 0.00 0.00 3.16
105 106 7.372451 TGCACACTAAACAGGATTATACAAC 57.628 36.000 0.00 0.00 0.00 3.32
106 107 7.415095 GCATGCACACTAAACAGGATTATACAA 60.415 37.037 14.21 0.00 0.00 2.41
107 108 6.038161 GCATGCACACTAAACAGGATTATACA 59.962 38.462 14.21 0.00 0.00 2.29
108 109 6.260936 AGCATGCACACTAAACAGGATTATAC 59.739 38.462 21.98 0.00 0.00 1.47
109 110 6.260714 CAGCATGCACACTAAACAGGATTATA 59.739 38.462 21.98 0.00 0.00 0.98
110 111 5.066893 CAGCATGCACACTAAACAGGATTAT 59.933 40.000 21.98 0.00 0.00 1.28
111 112 4.395854 CAGCATGCACACTAAACAGGATTA 59.604 41.667 21.98 0.00 0.00 1.75
112 113 3.192001 CAGCATGCACACTAAACAGGATT 59.808 43.478 21.98 0.00 0.00 3.01
113 114 2.751259 CAGCATGCACACTAAACAGGAT 59.249 45.455 21.98 0.00 0.00 3.24
114 115 2.153645 CAGCATGCACACTAAACAGGA 58.846 47.619 21.98 0.00 0.00 3.86
115 116 2.153645 TCAGCATGCACACTAAACAGG 58.846 47.619 21.98 0.00 34.76 4.00
116 117 3.437741 TCATCAGCATGCACACTAAACAG 59.562 43.478 21.98 0.00 34.76 3.16
117 118 3.410508 TCATCAGCATGCACACTAAACA 58.589 40.909 21.98 0.00 34.76 2.83
118 119 4.424061 TTCATCAGCATGCACACTAAAC 57.576 40.909 21.98 0.00 34.76 2.01
119 120 4.701171 TGATTCATCAGCATGCACACTAAA 59.299 37.500 21.98 7.15 34.76 1.85
120 121 4.095334 GTGATTCATCAGCATGCACACTAA 59.905 41.667 21.98 8.79 37.51 2.24
121 122 3.624410 GTGATTCATCAGCATGCACACTA 59.376 43.478 21.98 0.00 37.51 2.74
122 123 2.422479 GTGATTCATCAGCATGCACACT 59.578 45.455 21.98 0.00 37.51 3.55
123 124 2.790123 CGTGATTCATCAGCATGCACAC 60.790 50.000 21.98 13.85 37.51 3.82
124 125 1.399089 CGTGATTCATCAGCATGCACA 59.601 47.619 21.98 5.66 37.51 4.57
125 126 1.667212 TCGTGATTCATCAGCATGCAC 59.333 47.619 21.98 4.64 37.51 4.57
126 127 1.667212 GTCGTGATTCATCAGCATGCA 59.333 47.619 21.98 0.00 37.51 3.96
127 128 1.667212 TGTCGTGATTCATCAGCATGC 59.333 47.619 10.51 10.51 37.51 4.06
128 129 4.345271 TTTGTCGTGATTCATCAGCATG 57.655 40.909 0.00 0.00 37.51 4.06
129 130 5.571784 AATTTGTCGTGATTCATCAGCAT 57.428 34.783 0.00 0.00 37.51 3.79
130 131 4.435917 CGAATTTGTCGTGATTCATCAGCA 60.436 41.667 0.00 0.00 45.09 4.41
131 132 4.024438 CGAATTTGTCGTGATTCATCAGC 58.976 43.478 0.00 0.00 45.09 4.26
144 145 2.755836 ATATGTGCGGCGAATTTGTC 57.244 45.000 12.98 0.00 0.00 3.18
145 146 4.624336 TTTATATGTGCGGCGAATTTGT 57.376 36.364 12.98 0.00 0.00 2.83
146 147 4.975502 ACATTTATATGTGCGGCGAATTTG 59.024 37.500 12.98 0.00 43.29 2.32
147 148 5.181690 ACATTTATATGTGCGGCGAATTT 57.818 34.783 12.98 0.00 43.29 1.82
148 149 4.829064 ACATTTATATGTGCGGCGAATT 57.171 36.364 12.98 0.00 43.29 2.17
158 159 7.598493 GTGGCTGACAAAAACACATTTATATGT 59.402 33.333 0.00 0.00 45.81 2.29
159 160 7.598118 TGTGGCTGACAAAAACACATTTATATG 59.402 33.333 0.00 0.00 37.16 1.78
160 161 7.665690 TGTGGCTGACAAAAACACATTTATAT 58.334 30.769 0.00 0.00 37.16 0.86
161 162 7.043961 TGTGGCTGACAAAAACACATTTATA 57.956 32.000 0.00 0.00 37.16 0.98
162 163 5.911752 TGTGGCTGACAAAAACACATTTAT 58.088 33.333 0.00 0.00 37.16 1.40
163 164 5.330455 TGTGGCTGACAAAAACACATTTA 57.670 34.783 0.00 0.00 37.16 1.40
164 165 4.199432 TGTGGCTGACAAAAACACATTT 57.801 36.364 0.00 0.00 37.16 2.32
165 166 3.883830 TGTGGCTGACAAAAACACATT 57.116 38.095 0.00 0.00 37.16 2.71
167 168 2.495270 ACATGTGGCTGACAAAAACACA 59.505 40.909 0.00 0.00 44.91 3.72
168 169 3.115554 GACATGTGGCTGACAAAAACAC 58.884 45.455 1.15 0.00 38.36 3.32
169 170 2.223456 CGACATGTGGCTGACAAAAACA 60.223 45.455 1.15 0.00 38.36 2.83
170 171 2.032799 TCGACATGTGGCTGACAAAAAC 59.967 45.455 1.15 0.00 38.36 2.43
171 172 2.032799 GTCGACATGTGGCTGACAAAAA 59.967 45.455 11.55 0.00 38.36 1.94
172 173 1.601903 GTCGACATGTGGCTGACAAAA 59.398 47.619 11.55 0.00 38.36 2.44
173 174 1.225855 GTCGACATGTGGCTGACAAA 58.774 50.000 11.55 0.00 38.36 2.83
174 175 0.943835 CGTCGACATGTGGCTGACAA 60.944 55.000 17.16 0.00 38.36 3.18
175 176 1.372872 CGTCGACATGTGGCTGACA 60.373 57.895 17.16 0.00 39.53 3.58
176 177 1.080772 TCGTCGACATGTGGCTGAC 60.081 57.895 17.16 5.09 0.00 3.51
177 178 1.080772 GTCGTCGACATGTGGCTGA 60.081 57.895 20.28 0.00 32.09 4.26
178 179 1.347097 CTGTCGTCGACATGTGGCTG 61.347 60.000 27.10 10.92 41.94 4.85
179 180 1.080501 CTGTCGTCGACATGTGGCT 60.081 57.895 27.10 0.00 41.94 4.75
180 181 1.073216 CTCTGTCGTCGACATGTGGC 61.073 60.000 27.10 0.62 41.94 5.01
181 182 0.241213 ACTCTGTCGTCGACATGTGG 59.759 55.000 27.10 16.00 41.94 4.17
182 183 1.331241 CACTCTGTCGTCGACATGTG 58.669 55.000 29.63 29.63 41.94 3.21
183 184 0.952280 ACACTCTGTCGTCGACATGT 59.048 50.000 27.10 23.98 41.94 3.21
184 185 1.607713 GACACTCTGTCGTCGACATG 58.392 55.000 27.10 23.36 41.94 3.21
193 194 1.738350 TCGATTCTCCGACACTCTGTC 59.262 52.381 0.00 0.00 43.65 3.51
194 195 1.822506 TCGATTCTCCGACACTCTGT 58.177 50.000 0.00 0.00 33.14 3.41
195 196 2.162608 AGTTCGATTCTCCGACACTCTG 59.837 50.000 0.00 0.00 38.39 3.35
196 197 2.438411 AGTTCGATTCTCCGACACTCT 58.562 47.619 0.00 0.00 38.39 3.24
197 198 2.917971 CAAGTTCGATTCTCCGACACTC 59.082 50.000 0.00 0.00 38.39 3.51
198 199 2.927014 GCAAGTTCGATTCTCCGACACT 60.927 50.000 0.00 0.00 38.39 3.55
199 200 1.390463 GCAAGTTCGATTCTCCGACAC 59.610 52.381 0.00 0.00 38.39 3.67
200 201 1.000394 TGCAAGTTCGATTCTCCGACA 60.000 47.619 0.00 0.00 38.39 4.35
201 202 1.710013 TGCAAGTTCGATTCTCCGAC 58.290 50.000 0.00 0.00 38.39 4.79
202 203 2.672961 ATGCAAGTTCGATTCTCCGA 57.327 45.000 0.00 0.00 36.70 4.55
203 204 2.216488 CGTATGCAAGTTCGATTCTCCG 59.784 50.000 0.00 0.00 0.00 4.63
204 205 3.187700 ACGTATGCAAGTTCGATTCTCC 58.812 45.455 0.00 0.00 0.00 3.71
205 206 4.842139 AACGTATGCAAGTTCGATTCTC 57.158 40.909 0.00 0.00 0.00 2.87
206 207 5.165676 TGTAACGTATGCAAGTTCGATTCT 58.834 37.500 8.52 0.00 0.00 2.40
207 208 5.444586 TGTAACGTATGCAAGTTCGATTC 57.555 39.130 8.52 0.00 0.00 2.52
208 209 6.417191 AATGTAACGTATGCAAGTTCGATT 57.583 33.333 8.52 6.36 0.00 3.34
209 210 6.417191 AAATGTAACGTATGCAAGTTCGAT 57.583 33.333 8.52 1.26 0.00 3.59
210 211 5.849357 AAATGTAACGTATGCAAGTTCGA 57.151 34.783 8.52 0.00 0.00 3.71
211 212 5.506832 GGAAAATGTAACGTATGCAAGTTCG 59.493 40.000 8.52 5.49 0.00 3.95
212 213 6.375377 TGGAAAATGTAACGTATGCAAGTTC 58.625 36.000 8.52 0.00 0.00 3.01
213 214 6.320494 TGGAAAATGTAACGTATGCAAGTT 57.680 33.333 9.84 9.84 0.00 2.66
214 215 5.950758 TGGAAAATGTAACGTATGCAAGT 57.049 34.783 0.00 0.00 0.00 3.16
215 216 6.785191 AGATGGAAAATGTAACGTATGCAAG 58.215 36.000 0.00 0.00 0.00 4.01
216 217 6.751514 AGATGGAAAATGTAACGTATGCAA 57.248 33.333 0.00 0.00 0.00 4.08
217 218 6.751514 AAGATGGAAAATGTAACGTATGCA 57.248 33.333 0.00 0.00 0.00 3.96
218 219 7.690228 TGTAAGATGGAAAATGTAACGTATGC 58.310 34.615 0.00 0.00 0.00 3.14
219 220 9.864034 GATGTAAGATGGAAAATGTAACGTATG 57.136 33.333 0.00 0.00 0.00 2.39
220 221 8.761497 CGATGTAAGATGGAAAATGTAACGTAT 58.239 33.333 0.00 0.00 0.00 3.06
221 222 7.223193 CCGATGTAAGATGGAAAATGTAACGTA 59.777 37.037 0.00 0.00 0.00 3.57
222 223 6.036735 CCGATGTAAGATGGAAAATGTAACGT 59.963 38.462 0.00 0.00 0.00 3.99
223 224 6.036735 ACCGATGTAAGATGGAAAATGTAACG 59.963 38.462 0.00 0.00 0.00 3.18
224 225 7.316544 ACCGATGTAAGATGGAAAATGTAAC 57.683 36.000 0.00 0.00 0.00 2.50
225 226 8.885722 GTTACCGATGTAAGATGGAAAATGTAA 58.114 33.333 0.00 0.00 37.62 2.41
226 227 7.223193 CGTTACCGATGTAAGATGGAAAATGTA 59.777 37.037 0.00 0.00 37.62 2.29
227 228 6.036735 CGTTACCGATGTAAGATGGAAAATGT 59.963 38.462 0.00 0.00 37.62 2.71
228 229 6.418956 CGTTACCGATGTAAGATGGAAAATG 58.581 40.000 0.00 0.00 37.62 2.32
229 230 5.526111 CCGTTACCGATGTAAGATGGAAAAT 59.474 40.000 0.00 0.00 37.62 1.82
230 231 4.871557 CCGTTACCGATGTAAGATGGAAAA 59.128 41.667 0.00 0.00 37.62 2.29
231 232 4.160065 TCCGTTACCGATGTAAGATGGAAA 59.840 41.667 0.00 0.00 37.62 3.13
232 233 3.700539 TCCGTTACCGATGTAAGATGGAA 59.299 43.478 0.00 0.00 37.62 3.53
233 234 3.067180 GTCCGTTACCGATGTAAGATGGA 59.933 47.826 0.00 0.00 37.62 3.41
234 235 3.067742 AGTCCGTTACCGATGTAAGATGG 59.932 47.826 0.00 0.00 37.62 3.51
235 236 4.303086 AGTCCGTTACCGATGTAAGATG 57.697 45.455 0.00 0.00 37.62 2.90
236 237 4.996788 AAGTCCGTTACCGATGTAAGAT 57.003 40.909 0.00 0.00 37.62 2.40
237 238 4.789012 AAAGTCCGTTACCGATGTAAGA 57.211 40.909 0.00 0.00 37.62 2.10
238 239 5.636543 AGAAAAAGTCCGTTACCGATGTAAG 59.363 40.000 0.00 0.00 37.62 2.34
239 240 5.540911 AGAAAAAGTCCGTTACCGATGTAA 58.459 37.500 0.00 0.00 34.60 2.41
240 241 5.138125 AGAAAAAGTCCGTTACCGATGTA 57.862 39.130 0.00 0.00 35.63 2.29
241 242 3.999046 AGAAAAAGTCCGTTACCGATGT 58.001 40.909 0.00 0.00 35.63 3.06
242 243 6.366877 TCTTAAGAAAAAGTCCGTTACCGATG 59.633 38.462 1.68 0.00 35.63 3.84
243 244 6.458210 TCTTAAGAAAAAGTCCGTTACCGAT 58.542 36.000 1.68 0.00 35.63 4.18
244 245 5.841810 TCTTAAGAAAAAGTCCGTTACCGA 58.158 37.500 1.68 0.00 35.63 4.69
245 246 5.693555 ACTCTTAAGAAAAAGTCCGTTACCG 59.306 40.000 6.63 0.00 0.00 4.02
246 247 8.593492 TTACTCTTAAGAAAAAGTCCGTTACC 57.407 34.615 6.63 0.00 0.00 2.85
248 249 9.768662 ACATTACTCTTAAGAAAAAGTCCGTTA 57.231 29.630 6.63 0.00 0.00 3.18
249 250 8.557029 CACATTACTCTTAAGAAAAAGTCCGTT 58.443 33.333 6.63 0.00 0.00 4.44
250 251 7.307811 GCACATTACTCTTAAGAAAAAGTCCGT 60.308 37.037 6.63 1.09 0.00 4.69
251 252 7.015877 GCACATTACTCTTAAGAAAAAGTCCG 58.984 38.462 6.63 0.00 0.00 4.79
252 253 7.871853 TGCACATTACTCTTAAGAAAAAGTCC 58.128 34.615 6.63 0.00 0.00 3.85
253 254 9.548208 GATGCACATTACTCTTAAGAAAAAGTC 57.452 33.333 6.63 3.54 0.00 3.01
254 255 9.066892 TGATGCACATTACTCTTAAGAAAAAGT 57.933 29.630 6.63 3.61 0.00 2.66
255 256 9.334693 GTGATGCACATTACTCTTAAGAAAAAG 57.665 33.333 6.63 4.14 34.08 2.27
256 257 8.845227 TGTGATGCACATTACTCTTAAGAAAAA 58.155 29.630 6.63 4.28 39.62 1.94
257 258 8.389779 TGTGATGCACATTACTCTTAAGAAAA 57.610 30.769 6.63 4.64 39.62 2.29
258 259 7.977789 TGTGATGCACATTACTCTTAAGAAA 57.022 32.000 6.63 0.00 39.62 2.52
259 260 7.661437 AGTTGTGATGCACATTACTCTTAAGAA 59.339 33.333 6.63 0.00 44.16 2.52
260 261 7.161404 AGTTGTGATGCACATTACTCTTAAGA 58.839 34.615 4.81 4.81 44.16 2.10
261 262 7.369803 AGTTGTGATGCACATTACTCTTAAG 57.630 36.000 7.03 0.00 44.16 1.85
262 263 7.744087 AAGTTGTGATGCACATTACTCTTAA 57.256 32.000 7.03 0.00 44.16 1.85
263 264 7.744087 AAAGTTGTGATGCACATTACTCTTA 57.256 32.000 7.03 0.00 44.16 2.10
264 265 6.639632 AAAGTTGTGATGCACATTACTCTT 57.360 33.333 7.03 8.24 44.16 2.85
265 266 7.928307 ATAAAGTTGTGATGCACATTACTCT 57.072 32.000 7.03 3.54 44.16 3.24
266 267 9.098355 TCTATAAAGTTGTGATGCACATTACTC 57.902 33.333 7.03 1.65 44.16 2.59
267 268 9.448438 TTCTATAAAGTTGTGATGCACATTACT 57.552 29.630 7.03 0.50 44.16 2.24
268 269 9.708222 CTTCTATAAAGTTGTGATGCACATTAC 57.292 33.333 0.62 0.00 44.16 1.89
269 270 8.892723 CCTTCTATAAAGTTGTGATGCACATTA 58.107 33.333 0.62 0.00 44.16 1.90
270 271 7.148018 CCCTTCTATAAAGTTGTGATGCACATT 60.148 37.037 0.62 0.00 44.16 2.71
271 272 6.319658 CCCTTCTATAAAGTTGTGATGCACAT 59.680 38.462 0.62 0.00 44.16 3.21
272 273 5.647658 CCCTTCTATAAAGTTGTGATGCACA 59.352 40.000 0.00 0.00 43.02 4.57
273 274 5.880332 TCCCTTCTATAAAGTTGTGATGCAC 59.120 40.000 0.00 0.00 34.56 4.57
274 275 6.061022 TCCCTTCTATAAAGTTGTGATGCA 57.939 37.500 0.00 0.00 0.00 3.96
275 276 6.543831 ACATCCCTTCTATAAAGTTGTGATGC 59.456 38.462 0.00 0.00 31.44 3.91
276 277 7.770433 TGACATCCCTTCTATAAAGTTGTGATG 59.230 37.037 0.00 0.00 33.80 3.07
277 278 7.861629 TGACATCCCTTCTATAAAGTTGTGAT 58.138 34.615 0.00 0.00 0.00 3.06
278 279 7.252612 TGACATCCCTTCTATAAAGTTGTGA 57.747 36.000 0.00 0.00 0.00 3.58
279 280 7.921786 TTGACATCCCTTCTATAAAGTTGTG 57.078 36.000 0.00 0.00 0.00 3.33
291 292 8.659491 GCTTTCAAAAATAATTGACATCCCTTC 58.341 33.333 0.00 0.00 38.95 3.46
296 297 8.981647 ACACAGCTTTCAAAAATAATTGACATC 58.018 29.630 0.00 0.00 38.95 3.06
298 299 8.715191 AACACAGCTTTCAAAAATAATTGACA 57.285 26.923 0.00 0.00 38.95 3.58
308 309 6.162079 TGTTGATCAAACACAGCTTTCAAAA 58.838 32.000 10.35 0.00 43.96 2.44
311 312 4.979943 TGTTGATCAAACACAGCTTTCA 57.020 36.364 10.35 0.00 43.96 2.69
326 327 9.612066 AAATAAACTGTTTCCAACATTGTTGAT 57.388 25.926 27.08 8.70 41.26 2.57
390 392 5.708948 TCTTTTGTTTCGGCCAATGATTAG 58.291 37.500 2.24 0.00 0.00 1.73
426 428 3.053291 GTTGCGTGCCAATCGGGA 61.053 61.111 0.00 0.00 40.01 5.14
432 434 4.921847 GCTTGCGTTGCGTGCCAA 62.922 61.111 0.00 0.00 0.00 4.52
557 562 3.361158 TCACGGTTTGCCCATGCG 61.361 61.111 0.00 0.00 41.78 4.73
558 563 2.258286 GTCACGGTTTGCCCATGC 59.742 61.111 0.00 0.00 38.26 4.06
589 597 1.953138 GCTGGTCTGATCGATGCCG 60.953 63.158 0.54 0.00 37.07 5.69
609 617 1.726853 ACTGCTGCCTATCGTGTTTC 58.273 50.000 0.00 0.00 0.00 2.78
622 630 4.435436 TCGGCGCCACTACTGCTG 62.435 66.667 28.98 6.54 36.33 4.41
632 647 3.909258 TTGAGTCGTTCTCGGCGCC 62.909 63.158 19.07 19.07 46.96 6.53
798 817 6.560711 ACCTGCCAGCGTTTTAATTTATTAG 58.439 36.000 0.00 0.00 0.00 1.73
803 828 3.192633 CCTACCTGCCAGCGTTTTAATTT 59.807 43.478 0.00 0.00 0.00 1.82
806 831 1.816074 CCTACCTGCCAGCGTTTTAA 58.184 50.000 0.00 0.00 0.00 1.52
890 933 5.250200 AGCAATAATTGAGGTAACCGAACA 58.750 37.500 0.00 0.00 37.17 3.18
891 934 5.813080 AGCAATAATTGAGGTAACCGAAC 57.187 39.130 0.00 0.00 37.17 3.95
913 959 3.533720 CGGATGGGGAGACGCTTA 58.466 61.111 0.00 0.00 45.02 3.09
919 965 4.880426 GAGGGGCGGATGGGGAGA 62.880 72.222 0.00 0.00 0.00 3.71
921 967 4.514594 ATGAGGGGCGGATGGGGA 62.515 66.667 0.00 0.00 0.00 4.81
922 968 3.958860 GATGAGGGGCGGATGGGG 61.959 72.222 0.00 0.00 0.00 4.96
964 1010 2.660064 CGTGGAGGGGTGGAGGAAG 61.660 68.421 0.00 0.00 0.00 3.46
1257 1306 2.888447 ATAGCTGATCTGCCCCGCC 61.888 63.158 19.74 0.00 0.00 6.13
1260 1309 1.303155 GCCATAGCTGATCTGCCCC 60.303 63.158 19.74 2.13 35.50 5.80
1299 1348 1.043673 ATAGGTCCTGAGCGTCCACC 61.044 60.000 0.00 0.00 0.00 4.61
1308 1357 3.447586 CGAACCAGAGAAATAGGTCCTGA 59.552 47.826 0.00 0.00 33.74 3.86
1317 1366 1.298859 GCACGGCGAACCAGAGAAAT 61.299 55.000 16.62 0.00 34.57 2.17
1450 1499 1.817099 GTTGCAGGAGGATGAGCGG 60.817 63.158 0.00 0.00 0.00 5.52
1480 1529 0.240145 CATGGATGATGCGATGGTGC 59.760 55.000 0.00 0.00 0.00 5.01
1482 1531 2.873094 ATCATGGATGATGCGATGGT 57.127 45.000 1.18 0.00 45.27 3.55
1502 1551 0.793617 AGTATCGATGGGGAGGGGAT 59.206 55.000 8.54 0.00 0.00 3.85
1646 1698 4.137849 CACGATGAAATCATGGAATCCG 57.862 45.455 11.67 5.61 45.97 4.18
1671 1723 0.238289 CTGCGATTTCTGGTTTGCGT 59.762 50.000 0.00 0.00 0.00 5.24
1674 1726 4.358851 TCAAAACTGCGATTTCTGGTTTG 58.641 39.130 0.00 0.00 41.18 2.93
1675 1727 4.338118 TCTCAAAACTGCGATTTCTGGTTT 59.662 37.500 0.00 0.00 0.00 3.27
1751 1803 2.725723 GCAAACACAATGAATGACCACG 59.274 45.455 0.00 0.00 0.00 4.94
1762 1814 2.806244 GGTGACGAGTAGCAAACACAAT 59.194 45.455 0.00 0.00 0.00 2.71
1765 1817 2.059541 GAGGTGACGAGTAGCAAACAC 58.940 52.381 0.00 0.00 0.00 3.32
1774 1826 1.815613 CAGAGTGATGAGGTGACGAGT 59.184 52.381 0.00 0.00 0.00 4.18
1779 1831 2.564504 CAGGAACAGAGTGATGAGGTGA 59.435 50.000 0.00 0.00 0.00 4.02
1799 1851 1.001706 CAGAGGACAAGAACGACGACA 60.002 52.381 0.00 0.00 0.00 4.35
1803 1860 1.009389 CCGCAGAGGACAAGAACGAC 61.009 60.000 0.00 0.00 45.00 4.34
1816 1873 1.298157 CGATTGACTTTGGCCGCAGA 61.298 55.000 7.98 0.00 0.00 4.26
1876 1937 2.675844 TGAAAAATATGACAGTCGGCCG 59.324 45.455 22.12 22.12 0.00 6.13
1883 1944 7.315247 TCCATTACCGTGAAAAATATGACAG 57.685 36.000 0.00 0.00 0.00 3.51
1895 1956 3.904800 ACACATCATCCATTACCGTGA 57.095 42.857 0.00 0.00 0.00 4.35
1937 1998 3.961480 ACGAAGATCAGGATCACACAA 57.039 42.857 11.55 0.00 40.22 3.33
1966 2032 7.674348 TCACCCTAGATTCGAGGAATAATATGT 59.326 37.037 13.86 0.00 35.99 2.29
1977 2043 3.365465 CGCTGTATCACCCTAGATTCGAG 60.365 52.174 0.00 0.00 0.00 4.04
1985 2051 1.749063 CACTGACGCTGTATCACCCTA 59.251 52.381 0.00 0.00 0.00 3.53
1988 2054 1.202582 AGACACTGACGCTGTATCACC 59.797 52.381 0.00 0.00 0.00 4.02
1996 2062 1.689273 AGGAGAAAAGACACTGACGCT 59.311 47.619 0.00 0.00 0.00 5.07
2006 2072 2.900546 GTGAGGGAGTGAGGAGAAAAGA 59.099 50.000 0.00 0.00 0.00 2.52
2011 2077 1.005332 CAGAGTGAGGGAGTGAGGAGA 59.995 57.143 0.00 0.00 0.00 3.71
2061 2127 2.094757 ATCACGACACGTTCCTGGCA 62.095 55.000 0.00 0.00 38.32 4.92
2062 2128 0.949105 AATCACGACACGTTCCTGGC 60.949 55.000 0.00 0.00 38.32 4.85
2064 2130 1.068474 GGAATCACGACACGTTCCTG 58.932 55.000 0.00 0.00 38.32 3.86
2065 2131 0.037605 GGGAATCACGACACGTTCCT 60.038 55.000 11.42 0.00 38.32 3.36
2078 2164 1.000052 GAGGCGCTAGTACAGGGAATC 60.000 57.143 7.64 6.23 39.56 2.52
2079 2165 1.041437 GAGGCGCTAGTACAGGGAAT 58.959 55.000 7.64 1.91 39.56 3.01
2105 2191 4.631773 CTGGATGCCAGTGGTCAG 57.368 61.111 11.74 9.83 45.82 3.51
2122 2208 2.040213 CTGCGGCGAATCCATCACAC 62.040 60.000 12.98 0.00 34.01 3.82
2140 2226 1.407437 GGTGAATGGGAACGAGATGCT 60.407 52.381 0.00 0.00 0.00 3.79
2166 2268 2.743636 TCGTGACTGATCCCTTTCAC 57.256 50.000 0.00 0.00 35.93 3.18
2185 2287 4.439426 CGAGCTAGATTGACTACACTGCTT 60.439 45.833 0.00 0.00 31.89 3.91
2186 2288 3.066064 CGAGCTAGATTGACTACACTGCT 59.934 47.826 0.00 0.00 33.56 4.24
2189 2291 3.622630 ACCGAGCTAGATTGACTACACT 58.377 45.455 0.00 0.00 0.00 3.55
2190 2292 4.352887 GAACCGAGCTAGATTGACTACAC 58.647 47.826 0.00 0.00 0.00 2.90
2191 2293 3.064958 CGAACCGAGCTAGATTGACTACA 59.935 47.826 0.00 0.00 0.00 2.74
2192 2294 3.065095 ACGAACCGAGCTAGATTGACTAC 59.935 47.826 0.00 0.00 0.00 2.73
2193 2295 3.276857 ACGAACCGAGCTAGATTGACTA 58.723 45.455 0.00 0.00 0.00 2.59
2214 2316 6.981559 CACCGTCCCATAAAAGAAAAAGAAAA 59.018 34.615 0.00 0.00 0.00 2.29
2216 2318 5.595133 ACACCGTCCCATAAAAGAAAAAGAA 59.405 36.000 0.00 0.00 0.00 2.52
2218 2320 5.447624 ACACCGTCCCATAAAAGAAAAAG 57.552 39.130 0.00 0.00 0.00 2.27
2222 2324 3.822940 ACAACACCGTCCCATAAAAGAA 58.177 40.909 0.00 0.00 0.00 2.52
2224 2326 3.316868 ACAACAACACCGTCCCATAAAAG 59.683 43.478 0.00 0.00 0.00 2.27
2230 2332 0.035343 TCAACAACAACACCGTCCCA 60.035 50.000 0.00 0.00 0.00 4.37
2231 2333 0.379316 GTCAACAACAACACCGTCCC 59.621 55.000 0.00 0.00 0.00 4.46
2233 2335 2.160813 ACAAGTCAACAACAACACCGTC 59.839 45.455 0.00 0.00 0.00 4.79
2240 2343 5.070770 AGAATTGCACAAGTCAACAACAA 57.929 34.783 12.72 0.00 37.82 2.83
2243 2346 6.201226 TGTTAGAATTGCACAAGTCAACAA 57.799 33.333 17.81 7.12 37.82 2.83
2252 2355 3.342377 TCGGGATGTTAGAATTGCACA 57.658 42.857 0.00 0.00 0.00 4.57
2253 2356 4.900635 AATCGGGATGTTAGAATTGCAC 57.099 40.909 0.00 0.00 0.00 4.57
2263 2366 9.490379 GTATTTCTTCATAGTAATCGGGATGTT 57.510 33.333 0.00 0.00 0.00 2.71
2287 2390 9.430399 AGGTGGATAAATTTGCTAGTACTAGTA 57.570 33.333 26.76 21.67 35.65 1.82
2289 2392 9.046296 CAAGGTGGATAAATTTGCTAGTACTAG 57.954 37.037 23.25 23.25 36.29 2.57
2292 2395 6.826741 TCCAAGGTGGATAAATTTGCTAGTAC 59.173 38.462 0.00 0.00 42.67 2.73
2307 2412 2.615986 TACTAGCACTCCAAGGTGGA 57.384 50.000 0.00 0.00 45.98 4.02
2308 2413 3.034635 AGATACTAGCACTCCAAGGTGG 58.965 50.000 0.00 0.00 39.43 4.61
2309 2414 4.744795 AAGATACTAGCACTCCAAGGTG 57.255 45.455 0.00 0.00 39.91 4.00
2310 2415 6.611642 TCATTAAGATACTAGCACTCCAAGGT 59.388 38.462 0.00 0.00 0.00 3.50
2311 2416 6.926272 GTCATTAAGATACTAGCACTCCAAGG 59.074 42.308 0.00 0.00 0.00 3.61
2312 2417 6.926272 GGTCATTAAGATACTAGCACTCCAAG 59.074 42.308 0.00 0.00 0.00 3.61
2314 2419 5.304614 GGGTCATTAAGATACTAGCACTCCA 59.695 44.000 0.00 0.00 0.00 3.86
2315 2420 5.565045 CGGGTCATTAAGATACTAGCACTCC 60.565 48.000 0.00 0.00 0.00 3.85
2316 2421 5.009811 ACGGGTCATTAAGATACTAGCACTC 59.990 44.000 0.00 0.00 0.00 3.51
2317 2422 4.894114 ACGGGTCATTAAGATACTAGCACT 59.106 41.667 0.00 0.00 0.00 4.40
2319 2424 4.023450 CGACGGGTCATTAAGATACTAGCA 60.023 45.833 0.00 0.00 0.00 3.49
2321 2426 5.686159 ACGACGGGTCATTAAGATACTAG 57.314 43.478 0.00 0.00 0.00 2.57
2322 2427 5.734220 GCAACGACGGGTCATTAAGATACTA 60.734 44.000 0.00 0.00 0.00 1.82
2323 2428 4.679662 CAACGACGGGTCATTAAGATACT 58.320 43.478 0.00 0.00 0.00 2.12
2324 2429 3.244579 GCAACGACGGGTCATTAAGATAC 59.755 47.826 0.00 0.00 0.00 2.24
2325 2430 3.450578 GCAACGACGGGTCATTAAGATA 58.549 45.455 0.00 0.00 0.00 1.98
2326 2431 2.277084 GCAACGACGGGTCATTAAGAT 58.723 47.619 0.00 0.00 0.00 2.40
2327 2432 1.717194 GCAACGACGGGTCATTAAGA 58.283 50.000 0.00 0.00 0.00 2.10
2328 2433 0.368907 CGCAACGACGGGTCATTAAG 59.631 55.000 0.00 0.00 0.00 1.85
2329 2434 0.319727 ACGCAACGACGGGTCATTAA 60.320 50.000 0.00 0.00 37.37 1.40
2330 2435 1.009903 CACGCAACGACGGGTCATTA 61.010 55.000 0.00 0.00 37.37 1.90
2331 2436 2.029964 ACGCAACGACGGGTCATT 59.970 55.556 0.00 0.00 37.37 2.57
2332 2437 2.736995 CACGCAACGACGGGTCAT 60.737 61.111 0.00 0.00 37.37 3.06
2336 2441 3.698463 GTCACACGCAACGACGGG 61.698 66.667 0.00 0.00 43.76 5.28
2337 2442 4.042060 CGTCACACGCAACGACGG 62.042 66.667 0.00 0.00 46.59 4.79
2347 2452 1.707239 TTGCCGGTTTCACGTCACAC 61.707 55.000 1.90 0.00 0.00 3.82
2348 2453 0.816018 ATTGCCGGTTTCACGTCACA 60.816 50.000 1.90 0.00 0.00 3.58
2349 2454 0.110373 GATTGCCGGTTTCACGTCAC 60.110 55.000 1.90 0.00 0.00 3.67
2350 2455 0.533085 TGATTGCCGGTTTCACGTCA 60.533 50.000 1.90 0.00 0.00 4.35
2351 2456 0.589223 TTGATTGCCGGTTTCACGTC 59.411 50.000 1.90 0.00 0.00 4.34
2352 2457 1.199097 GATTGATTGCCGGTTTCACGT 59.801 47.619 1.90 0.00 0.00 4.49
2353 2458 1.198867 TGATTGATTGCCGGTTTCACG 59.801 47.619 1.90 0.00 0.00 4.35
2354 2459 2.867429 CTGATTGATTGCCGGTTTCAC 58.133 47.619 1.90 0.00 0.00 3.18
2355 2460 1.202114 GCTGATTGATTGCCGGTTTCA 59.798 47.619 1.90 0.62 0.00 2.69
2356 2461 1.202114 TGCTGATTGATTGCCGGTTTC 59.798 47.619 1.90 0.00 0.00 2.78
2357 2462 1.067635 GTGCTGATTGATTGCCGGTTT 60.068 47.619 1.90 0.00 0.00 3.27
2360 2465 0.179156 GTGTGCTGATTGATTGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
2418 2524 3.575687 AGTAGTTAACCGTGGCAGTTAGT 59.424 43.478 0.88 0.00 31.66 2.24
2419 2525 4.184079 AGTAGTTAACCGTGGCAGTTAG 57.816 45.455 0.88 0.00 31.66 2.34
2429 2537 2.679837 TGGCTCGAGTAGTAGTTAACCG 59.320 50.000 15.13 0.00 0.00 4.44
2436 2544 2.186076 CGCTTTTGGCTCGAGTAGTAG 58.814 52.381 15.13 6.80 39.13 2.57
2439 2547 0.737715 AGCGCTTTTGGCTCGAGTAG 60.738 55.000 15.13 5.43 35.37 2.57
2440 2548 0.736325 GAGCGCTTTTGGCTCGAGTA 60.736 55.000 13.26 0.37 46.38 2.59
2441 2549 2.029844 GAGCGCTTTTGGCTCGAGT 61.030 57.895 13.26 0.00 46.38 4.18
2442 2550 2.781300 GAGCGCTTTTGGCTCGAG 59.219 61.111 13.26 8.45 46.38 4.04
2449 2557 4.107051 CTGGCCGGAGCGCTTTTG 62.107 66.667 13.26 4.19 41.24 2.44
2461 2569 1.582968 CATTGACTGTGTGCTGGCC 59.417 57.895 0.00 0.00 0.00 5.36
2464 2572 0.949397 ACTGCATTGACTGTGTGCTG 59.051 50.000 11.82 11.82 41.64 4.41
2466 2574 1.136252 CGTACTGCATTGACTGTGTGC 60.136 52.381 0.00 0.00 39.26 4.57
2488 2601 0.962356 CCAGTGCCTCCTTTGCGATT 60.962 55.000 0.00 0.00 0.00 3.34
2498 2611 4.729918 CCCAGGTGCCAGTGCCTC 62.730 72.222 0.00 0.00 36.33 4.70
2510 2623 1.144057 GTGTCGACTATGGCCCAGG 59.856 63.158 17.92 0.00 0.00 4.45
2519 2632 0.596577 GGTGTGCTGAGTGTCGACTA 59.403 55.000 17.92 0.00 30.16 2.59
2520 2633 1.364171 GGTGTGCTGAGTGTCGACT 59.636 57.895 17.92 0.00 33.98 4.18
2521 2634 2.016704 CGGTGTGCTGAGTGTCGAC 61.017 63.158 9.11 9.11 0.00 4.20
2522 2635 2.335011 CGGTGTGCTGAGTGTCGA 59.665 61.111 0.00 0.00 0.00 4.20
2523 2636 2.734723 CCGGTGTGCTGAGTGTCG 60.735 66.667 0.00 0.00 0.00 4.35
2524 2637 2.357517 CCCGGTGTGCTGAGTGTC 60.358 66.667 0.00 0.00 0.00 3.67
2525 2638 4.626081 GCCCGGTGTGCTGAGTGT 62.626 66.667 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.