Multiple sequence alignment - TraesCS3B01G453700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G453700 chr3B 100.000 3560 0 0 1 3560 694329098 694325539 0.000000e+00 6575.0
1 TraesCS3B01G453700 chr3B 80.106 377 50 16 2872 3238 140590262 140589901 1.270000e-64 257.0
2 TraesCS3B01G453700 chr3A 95.740 2723 87 12 864 3560 660240567 660237848 0.000000e+00 4359.0
3 TraesCS3B01G453700 chr3D 96.505 1774 52 9 864 2631 526052560 526050791 0.000000e+00 2924.0
4 TraesCS3B01G453700 chr3D 93.895 950 29 12 2630 3560 526050626 526049687 0.000000e+00 1406.0
5 TraesCS3B01G453700 chr3D 88.073 218 20 3 3 215 501381388 501381604 1.640000e-63 254.0
6 TraesCS3B01G453700 chr3D 95.745 47 2 0 250 296 526067741 526067695 3.810000e-10 76.8
7 TraesCS3B01G453700 chr7D 85.258 407 44 10 449 849 538375300 538374904 4.280000e-109 405.0
8 TraesCS3B01G453700 chr7D 80.533 375 44 16 2872 3238 162017339 162017692 9.800000e-66 261.0
9 TraesCS3B01G453700 chr7A 84.597 409 48 10 449 849 619873160 619873561 3.330000e-105 392.0
10 TraesCS3B01G453700 chr7A 80.189 424 60 19 444 849 520802246 520801829 2.690000e-76 296.0
11 TraesCS3B01G453700 chr4D 80.815 417 63 8 447 851 441081531 441081120 9.600000e-81 311.0
12 TraesCS3B01G453700 chr4A 81.717 361 59 7 445 800 657894796 657895154 9.670000e-76 294.0
13 TraesCS3B01G453700 chr4A 81.855 248 31 11 1 247 153229118 153228884 2.800000e-46 196.0
14 TraesCS3B01G453700 chr1B 79.808 416 69 11 447 851 27673034 27673445 4.500000e-74 289.0
15 TraesCS3B01G453700 chr1B 97.826 46 1 0 250 295 599631556 599631511 2.950000e-11 80.5
16 TraesCS3B01G453700 chr1B 97.826 46 1 0 250 295 599832525 599832480 2.950000e-11 80.5
17 TraesCS3B01G453700 chr1B 97.826 46 1 0 250 295 599921066 599921021 2.950000e-11 80.5
18 TraesCS3B01G453700 chr1B 97.826 46 1 0 250 295 599978377 599978332 2.950000e-11 80.5
19 TraesCS3B01G453700 chr5A 81.183 372 48 15 2874 3238 580593290 580593646 2.710000e-71 279.0
20 TraesCS3B01G453700 chr4B 81.058 359 59 7 447 800 546830900 546830546 9.730000e-71 278.0
21 TraesCS3B01G453700 chr4B 86.603 209 27 1 1 209 24772537 24772744 2.760000e-56 230.0
22 TraesCS3B01G453700 chr2B 91.053 190 14 3 2 190 491366026 491366213 1.640000e-63 254.0
23 TraesCS3B01G453700 chr2B 87.907 215 21 5 2 216 47799669 47799878 7.630000e-62 248.0
24 TraesCS3B01G453700 chr2B 87.442 215 22 5 2 216 47755809 47756018 3.550000e-60 243.0
25 TraesCS3B01G453700 chr2B 87.923 207 24 1 1 207 545346048 545345843 3.550000e-60 243.0
26 TraesCS3B01G453700 chr2B 84.889 225 31 3 10 233 545347566 545347344 1.290000e-54 224.0
27 TraesCS3B01G453700 chr5B 86.017 236 23 6 1 233 450537618 450537846 9.870000e-61 244.0
28 TraesCS3B01G453700 chr5B 83.544 237 27 8 1 233 228833927 228834155 1.000000e-50 211.0
29 TraesCS3B01G453700 chr2A 85.408 233 29 3 1 233 672621949 672622176 1.650000e-58 237.0
30 TraesCS3B01G453700 chr2A 77.033 418 68 24 446 850 1319595 1319193 7.740000e-52 215.0
31 TraesCS3B01G453700 chr2D 81.661 289 43 9 447 727 605567728 605568014 7.690000e-57 231.0
32 TraesCS3B01G453700 chr2D 100.000 43 0 0 253 295 8220601 8220559 2.950000e-11 80.5
33 TraesCS3B01G453700 chr7B 84.188 234 28 9 1 232 553469384 553469158 5.980000e-53 219.0
34 TraesCS3B01G453700 chr7B 82.845 239 25 12 1 233 484896989 484897217 2.170000e-47 200.0
35 TraesCS3B01G453700 chr6B 76.722 421 67 22 447 848 135948852 135949260 4.660000e-49 206.0
36 TraesCS3B01G453700 chr5D 97.826 46 1 0 250 295 528751906 528751861 2.950000e-11 80.5
37 TraesCS3B01G453700 chr1D 97.826 46 1 0 250 295 441735805 441735760 2.950000e-11 80.5
38 TraesCS3B01G453700 chr6A 95.745 47 2 0 249 295 599797603 599797649 3.810000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G453700 chr3B 694325539 694329098 3559 True 6575.0 6575 100.000 1 3560 1 chr3B.!!$R2 3559
1 TraesCS3B01G453700 chr3A 660237848 660240567 2719 True 4359.0 4359 95.740 864 3560 1 chr3A.!!$R1 2696
2 TraesCS3B01G453700 chr3D 526049687 526052560 2873 True 2165.0 2924 95.200 864 3560 2 chr3D.!!$R2 2696
3 TraesCS3B01G453700 chr2B 545345843 545347566 1723 True 233.5 243 86.406 1 233 2 chr2B.!!$R1 232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.039074 CTACCTCTTATGCGAGCGGG 60.039 60.0 0.00 0.00 0.00 6.13 F
478 479 0.040425 GTGAACATGGTTCCACACGC 60.040 55.0 6.64 0.00 0.00 5.34 F
746 747 0.040958 ACGCGAATATACCGGTCGAC 60.041 55.0 12.40 7.13 36.92 4.20 F
959 1050 0.100325 TTGAAAACCGCACAGCACAG 59.900 50.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 2211 0.111639 TTCCAACCCACCCAGCTAAC 59.888 55.000 0.00 0.00 0.00 2.34 R
2016 2349 1.414919 GTGTAAGGGTATGCATCCGGA 59.585 52.381 6.61 6.61 0.00 5.14 R
2370 2760 1.792993 GCAATCTCAGCATTGTCGTGC 60.793 52.381 0.00 0.00 45.38 5.34 R
2880 3514 1.073763 TGGAGTGCAAAGCAGGTACAT 59.926 47.619 0.00 0.00 40.08 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.140591 TCCATGGAGGGATTGAGAGATAGT 60.141 45.833 11.44 0.00 38.24 2.12
34 35 4.762765 GGGATTGAGAGATAGTAAGCTCGA 59.237 45.833 0.00 0.00 43.12 4.04
36 37 6.378582 GGATTGAGAGATAGTAAGCTCGAAG 58.621 44.000 0.00 0.00 43.12 3.79
57 58 1.535202 GGTCAACAATGGGGGCCAA 60.535 57.895 4.39 0.00 36.95 4.52
65 66 4.966787 TGGGGGCCAAACACGAGC 62.967 66.667 4.39 0.00 0.00 5.03
67 68 2.597510 GGGGCCAAACACGAGCTT 60.598 61.111 4.39 0.00 0.00 3.74
77 78 4.396166 CCAAACACGAGCTTGAAGGATAAT 59.604 41.667 8.31 0.00 0.00 1.28
78 79 5.106157 CCAAACACGAGCTTGAAGGATAATT 60.106 40.000 8.31 0.00 0.00 1.40
79 80 5.803020 AACACGAGCTTGAAGGATAATTC 57.197 39.130 8.31 0.00 0.00 2.17
83 84 4.199310 CGAGCTTGAAGGATAATTCCCAA 58.801 43.478 0.00 0.00 43.76 4.12
101 102 2.225369 CCAATGGGGAAGAAGAAACCCT 60.225 50.000 0.00 0.00 43.72 4.34
115 116 4.188733 AGAAACCCTTTTATAGGTGGGGA 58.811 43.478 3.15 0.00 43.07 4.81
119 120 5.357157 ACCCTTTTATAGGTGGGGAAAAA 57.643 39.130 3.15 0.00 43.07 1.94
145 146 3.515602 ACCATTATCCCCATTCTCAGC 57.484 47.619 0.00 0.00 0.00 4.26
186 187 1.765230 CTCAAGGGAGCGGTACTACT 58.235 55.000 0.00 0.00 33.67 2.57
187 188 1.405821 CTCAAGGGAGCGGTACTACTG 59.594 57.143 0.00 0.00 33.67 2.74
209 210 3.133464 CGCGGACGGGTGGTACTA 61.133 66.667 0.00 0.00 34.97 1.82
210 211 2.491621 GCGGACGGGTGGTACTAC 59.508 66.667 0.00 0.00 0.00 2.73
211 212 3.068729 GCGGACGGGTGGTACTACC 62.069 68.421 19.65 19.65 40.10 3.18
219 220 3.735181 GTGGTACTACCGCTCAAGG 57.265 57.895 11.06 0.00 45.06 3.61
220 221 0.175073 GTGGTACTACCGCTCAAGGG 59.825 60.000 11.06 0.00 45.06 3.95
221 222 0.040058 TGGTACTACCGCTCAAGGGA 59.960 55.000 0.62 0.00 42.58 4.20
239 240 3.919223 GGAGCGGTACTACCTCTTATG 57.081 52.381 3.68 0.00 32.59 1.90
240 241 2.030096 GGAGCGGTACTACCTCTTATGC 60.030 54.545 3.68 0.00 32.59 3.14
241 242 1.607628 AGCGGTACTACCTCTTATGCG 59.392 52.381 3.68 0.00 35.66 4.73
242 243 1.605710 GCGGTACTACCTCTTATGCGA 59.394 52.381 3.68 0.00 35.66 5.10
243 244 2.350580 GCGGTACTACCTCTTATGCGAG 60.351 54.545 3.68 0.00 35.66 5.03
244 245 2.350580 CGGTACTACCTCTTATGCGAGC 60.351 54.545 3.68 0.00 35.66 5.03
245 246 2.350580 GGTACTACCTCTTATGCGAGCG 60.351 54.545 0.00 0.00 34.73 5.03
246 247 0.669077 ACTACCTCTTATGCGAGCGG 59.331 55.000 0.00 0.00 0.00 5.52
247 248 0.039074 CTACCTCTTATGCGAGCGGG 60.039 60.000 0.00 0.00 0.00 6.13
248 249 2.083835 TACCTCTTATGCGAGCGGGC 62.084 60.000 0.00 0.00 0.00 6.13
249 250 3.032609 CTCTTATGCGAGCGGGCG 61.033 66.667 0.00 0.00 35.06 6.13
250 251 4.585526 TCTTATGCGAGCGGGCGG 62.586 66.667 0.00 0.00 35.06 6.13
251 252 4.891727 CTTATGCGAGCGGGCGGT 62.892 66.667 0.00 0.00 35.06 5.68
257 258 4.812476 CGAGCGGGCGGTGATGAA 62.812 66.667 0.00 0.00 0.00 2.57
258 259 2.435938 GAGCGGGCGGTGATGAAA 60.436 61.111 0.00 0.00 0.00 2.69
259 260 1.819632 GAGCGGGCGGTGATGAAAT 60.820 57.895 0.00 0.00 0.00 2.17
260 261 1.376609 GAGCGGGCGGTGATGAAATT 61.377 55.000 0.00 0.00 0.00 1.82
261 262 0.965363 AGCGGGCGGTGATGAAATTT 60.965 50.000 0.00 0.00 0.00 1.82
262 263 0.108851 GCGGGCGGTGATGAAATTTT 60.109 50.000 0.00 0.00 0.00 1.82
263 264 1.627879 CGGGCGGTGATGAAATTTTG 58.372 50.000 0.00 0.00 0.00 2.44
264 265 1.358877 GGGCGGTGATGAAATTTTGC 58.641 50.000 0.00 0.00 0.00 3.68
265 266 1.337635 GGGCGGTGATGAAATTTTGCA 60.338 47.619 0.00 0.00 0.00 4.08
266 267 2.411904 GGCGGTGATGAAATTTTGCAA 58.588 42.857 0.00 0.00 0.00 4.08
267 268 2.412770 GGCGGTGATGAAATTTTGCAAG 59.587 45.455 0.00 0.00 0.00 4.01
268 269 2.159801 GCGGTGATGAAATTTTGCAAGC 60.160 45.455 0.00 0.00 0.00 4.01
269 270 3.319755 CGGTGATGAAATTTTGCAAGCT 58.680 40.909 0.00 0.00 0.00 3.74
270 271 4.484236 CGGTGATGAAATTTTGCAAGCTA 58.516 39.130 0.00 0.00 0.00 3.32
271 272 5.104374 CGGTGATGAAATTTTGCAAGCTAT 58.896 37.500 0.00 0.00 0.00 2.97
272 273 5.005012 CGGTGATGAAATTTTGCAAGCTATG 59.995 40.000 0.00 0.00 0.00 2.23
273 274 6.101332 GGTGATGAAATTTTGCAAGCTATGA 58.899 36.000 0.00 0.00 0.00 2.15
274 275 6.591062 GGTGATGAAATTTTGCAAGCTATGAA 59.409 34.615 0.00 0.00 0.00 2.57
275 276 7.118101 GGTGATGAAATTTTGCAAGCTATGAAA 59.882 33.333 0.00 0.00 0.00 2.69
276 277 8.497554 GTGATGAAATTTTGCAAGCTATGAAAA 58.502 29.630 0.00 0.00 34.60 2.29
277 278 8.497554 TGATGAAATTTTGCAAGCTATGAAAAC 58.502 29.630 0.00 0.00 36.24 2.43
278 279 7.783090 TGAAATTTTGCAAGCTATGAAAACA 57.217 28.000 0.00 0.00 36.24 2.83
279 280 8.380743 TGAAATTTTGCAAGCTATGAAAACAT 57.619 26.923 0.00 0.00 36.24 2.71
280 281 8.838365 TGAAATTTTGCAAGCTATGAAAACATT 58.162 25.926 0.00 0.00 36.24 2.71
281 282 9.667989 GAAATTTTGCAAGCTATGAAAACATTT 57.332 25.926 0.00 13.93 36.24 2.32
282 283 9.453325 AAATTTTGCAAGCTATGAAAACATTTG 57.547 25.926 0.00 0.00 36.24 2.32
283 284 7.551035 TTTTGCAAGCTATGAAAACATTTGT 57.449 28.000 0.00 0.00 36.24 2.83
284 285 6.768029 TTGCAAGCTATGAAAACATTTGTC 57.232 33.333 0.00 0.00 0.00 3.18
285 286 5.840715 TGCAAGCTATGAAAACATTTGTCA 58.159 33.333 0.00 0.00 0.00 3.58
286 287 6.279123 TGCAAGCTATGAAAACATTTGTCAA 58.721 32.000 0.00 0.00 0.00 3.18
287 288 6.760298 TGCAAGCTATGAAAACATTTGTCAAA 59.240 30.769 0.00 0.00 0.00 2.69
288 289 7.042590 TGCAAGCTATGAAAACATTTGTCAAAG 60.043 33.333 4.03 0.00 0.00 2.77
289 290 7.042523 GCAAGCTATGAAAACATTTGTCAAAGT 60.043 33.333 4.03 0.09 0.00 2.66
290 291 8.819974 CAAGCTATGAAAACATTTGTCAAAGTT 58.180 29.630 4.03 5.89 0.00 2.66
291 292 8.947055 AGCTATGAAAACATTTGTCAAAGTTT 57.053 26.923 14.74 14.74 35.87 2.66
292 293 9.034544 AGCTATGAAAACATTTGTCAAAGTTTC 57.965 29.630 18.13 17.63 33.45 2.78
293 294 8.816144 GCTATGAAAACATTTGTCAAAGTTTCA 58.184 29.630 23.25 23.25 35.71 2.69
295 296 8.776376 ATGAAAACATTTGTCAAAGTTTCACT 57.224 26.923 23.38 15.58 34.89 3.41
296 297 9.868277 ATGAAAACATTTGTCAAAGTTTCACTA 57.132 25.926 23.38 11.35 34.89 2.74
297 298 9.698309 TGAAAACATTTGTCAAAGTTTCACTAA 57.302 25.926 20.14 0.00 33.45 2.24
322 323 4.568152 TTTTTACTGTTTGCCTGAGCTC 57.432 40.909 6.82 6.82 40.80 4.09
323 324 2.928801 TTACTGTTTGCCTGAGCTCA 57.071 45.000 17.19 17.19 40.80 4.26
324 325 3.423539 TTACTGTTTGCCTGAGCTCAT 57.576 42.857 18.63 0.89 40.80 2.90
325 326 4.551702 TTACTGTTTGCCTGAGCTCATA 57.448 40.909 18.63 4.01 40.80 2.15
326 327 3.641434 ACTGTTTGCCTGAGCTCATAT 57.359 42.857 18.63 0.00 40.80 1.78
327 328 3.276857 ACTGTTTGCCTGAGCTCATATG 58.723 45.455 18.63 10.14 40.80 1.78
328 329 3.054875 ACTGTTTGCCTGAGCTCATATGA 60.055 43.478 18.63 5.07 40.80 2.15
329 330 3.538591 TGTTTGCCTGAGCTCATATGAG 58.461 45.455 25.64 25.64 44.75 2.90
344 345 6.983906 TCATATGAGCTCAGGATTAGAACA 57.016 37.500 22.96 0.00 0.00 3.18
345 346 7.365497 TCATATGAGCTCAGGATTAGAACAA 57.635 36.000 22.96 0.00 0.00 2.83
346 347 7.212976 TCATATGAGCTCAGGATTAGAACAAC 58.787 38.462 22.96 0.00 0.00 3.32
347 348 4.207891 TGAGCTCAGGATTAGAACAACC 57.792 45.455 13.74 0.00 0.00 3.77
348 349 3.190874 GAGCTCAGGATTAGAACAACCG 58.809 50.000 9.40 0.00 0.00 4.44
349 350 1.666189 GCTCAGGATTAGAACAACCGC 59.334 52.381 0.00 0.00 0.00 5.68
350 351 1.927174 CTCAGGATTAGAACAACCGCG 59.073 52.381 0.00 0.00 0.00 6.46
351 352 1.274167 TCAGGATTAGAACAACCGCGT 59.726 47.619 4.92 0.00 0.00 6.01
352 353 2.073816 CAGGATTAGAACAACCGCGTT 58.926 47.619 4.92 0.00 0.00 4.84
353 354 2.093783 CAGGATTAGAACAACCGCGTTC 59.906 50.000 4.92 1.63 44.63 3.95
354 355 2.070783 GGATTAGAACAACCGCGTTCA 58.929 47.619 4.92 0.00 46.32 3.18
355 356 2.093783 GGATTAGAACAACCGCGTTCAG 59.906 50.000 4.92 0.00 46.32 3.02
356 357 2.512485 TTAGAACAACCGCGTTCAGA 57.488 45.000 4.92 0.00 46.32 3.27
357 358 2.512485 TAGAACAACCGCGTTCAGAA 57.488 45.000 4.92 0.00 46.32 3.02
358 359 1.878953 AGAACAACCGCGTTCAGAAT 58.121 45.000 4.92 0.00 46.32 2.40
359 360 3.034721 AGAACAACCGCGTTCAGAATA 57.965 42.857 4.92 0.00 46.32 1.75
360 361 3.395639 AGAACAACCGCGTTCAGAATAA 58.604 40.909 4.92 0.00 46.32 1.40
361 362 3.810941 AGAACAACCGCGTTCAGAATAAA 59.189 39.130 4.92 0.00 46.32 1.40
362 363 4.454504 AGAACAACCGCGTTCAGAATAAAT 59.545 37.500 4.92 0.00 46.32 1.40
363 364 4.759516 ACAACCGCGTTCAGAATAAATT 57.240 36.364 4.92 0.00 0.00 1.82
364 365 5.116069 ACAACCGCGTTCAGAATAAATTT 57.884 34.783 4.92 0.00 0.00 1.82
365 366 4.915085 ACAACCGCGTTCAGAATAAATTTG 59.085 37.500 4.92 0.00 0.00 2.32
366 367 3.498082 ACCGCGTTCAGAATAAATTTGC 58.502 40.909 4.92 0.00 0.00 3.68
367 368 3.190535 ACCGCGTTCAGAATAAATTTGCT 59.809 39.130 4.92 0.00 0.00 3.91
368 369 4.165779 CCGCGTTCAGAATAAATTTGCTT 58.834 39.130 4.92 0.00 0.00 3.91
369 370 4.621034 CCGCGTTCAGAATAAATTTGCTTT 59.379 37.500 4.92 0.00 0.00 3.51
370 371 5.118510 CCGCGTTCAGAATAAATTTGCTTTT 59.881 36.000 4.92 0.00 0.00 2.27
371 372 6.226407 CGCGTTCAGAATAAATTTGCTTTTC 58.774 36.000 0.00 0.00 0.00 2.29
372 373 6.088085 CGCGTTCAGAATAAATTTGCTTTTCT 59.912 34.615 0.00 1.90 0.00 2.52
373 374 7.358352 CGCGTTCAGAATAAATTTGCTTTTCTT 60.358 33.333 0.00 0.00 0.00 2.52
374 375 8.911662 GCGTTCAGAATAAATTTGCTTTTCTTA 58.088 29.630 0.00 0.00 0.00 2.10
378 379 9.846248 TCAGAATAAATTTGCTTTTCTTAGAGC 57.154 29.630 0.00 0.00 39.33 4.09
379 380 9.852091 CAGAATAAATTTGCTTTTCTTAGAGCT 57.148 29.630 0.00 0.00 39.60 4.09
381 382 9.295214 GAATAAATTTGCTTTTCTTAGAGCTCC 57.705 33.333 10.93 0.00 39.60 4.70
382 383 4.954092 ATTTGCTTTTCTTAGAGCTCCG 57.046 40.909 10.93 0.00 39.60 4.63
383 384 3.402628 TTGCTTTTCTTAGAGCTCCGT 57.597 42.857 10.93 0.00 39.60 4.69
384 385 3.402628 TGCTTTTCTTAGAGCTCCGTT 57.597 42.857 10.93 0.00 39.60 4.44
385 386 4.530710 TGCTTTTCTTAGAGCTCCGTTA 57.469 40.909 10.93 0.00 39.60 3.18
386 387 5.086104 TGCTTTTCTTAGAGCTCCGTTAT 57.914 39.130 10.93 0.00 39.60 1.89
387 388 5.488341 TGCTTTTCTTAGAGCTCCGTTATT 58.512 37.500 10.93 0.00 39.60 1.40
388 389 5.938125 TGCTTTTCTTAGAGCTCCGTTATTT 59.062 36.000 10.93 0.00 39.60 1.40
389 390 6.430000 TGCTTTTCTTAGAGCTCCGTTATTTT 59.570 34.615 10.93 0.00 39.60 1.82
390 391 7.040686 TGCTTTTCTTAGAGCTCCGTTATTTTT 60.041 33.333 10.93 0.00 39.60 1.94
408 409 3.543680 TTTTTAGGGATGAGAGCTCCG 57.456 47.619 10.93 0.00 33.29 4.63
409 410 2.160721 TTTAGGGATGAGAGCTCCGT 57.839 50.000 10.93 3.16 35.24 4.69
410 411 2.160721 TTAGGGATGAGAGCTCCGTT 57.839 50.000 10.93 0.00 33.22 4.44
411 412 3.308035 TTAGGGATGAGAGCTCCGTTA 57.692 47.619 10.93 0.00 33.22 3.18
412 413 2.390225 AGGGATGAGAGCTCCGTTAT 57.610 50.000 10.93 0.00 33.29 1.89
413 414 2.683768 AGGGATGAGAGCTCCGTTATT 58.316 47.619 10.93 0.00 33.29 1.40
414 415 3.041946 AGGGATGAGAGCTCCGTTATTT 58.958 45.455 10.93 0.00 33.29 1.40
415 416 3.134458 GGGATGAGAGCTCCGTTATTTG 58.866 50.000 10.93 0.00 33.29 2.32
416 417 3.134458 GGATGAGAGCTCCGTTATTTGG 58.866 50.000 10.93 0.00 0.00 3.28
417 418 2.024176 TGAGAGCTCCGTTATTTGGC 57.976 50.000 10.93 0.00 0.00 4.52
418 419 1.277842 TGAGAGCTCCGTTATTTGGCA 59.722 47.619 10.93 0.00 0.00 4.92
419 420 2.290008 TGAGAGCTCCGTTATTTGGCAA 60.290 45.455 10.93 0.00 0.00 4.52
420 421 2.352960 GAGAGCTCCGTTATTTGGCAAG 59.647 50.000 10.93 0.00 0.00 4.01
421 422 0.811281 AGCTCCGTTATTTGGCAAGC 59.189 50.000 0.00 0.00 0.00 4.01
422 423 0.525761 GCTCCGTTATTTGGCAAGCA 59.474 50.000 0.00 0.00 0.00 3.91
423 424 1.067915 GCTCCGTTATTTGGCAAGCAA 60.068 47.619 0.00 0.00 0.00 3.91
424 425 2.417243 GCTCCGTTATTTGGCAAGCAAT 60.417 45.455 0.00 0.00 0.00 3.56
425 426 3.848726 CTCCGTTATTTGGCAAGCAATT 58.151 40.909 0.00 0.00 0.00 2.32
426 427 4.244862 CTCCGTTATTTGGCAAGCAATTT 58.755 39.130 0.00 0.00 0.00 1.82
427 428 4.636249 TCCGTTATTTGGCAAGCAATTTT 58.364 34.783 0.00 0.00 0.00 1.82
428 429 5.059833 TCCGTTATTTGGCAAGCAATTTTT 58.940 33.333 0.00 0.00 0.00 1.94
450 451 2.915137 GGGTTGGCAAGCCCGAAA 60.915 61.111 32.91 0.00 43.23 3.46
451 452 2.503382 GGGTTGGCAAGCCCGAAAA 61.503 57.895 32.91 0.00 43.23 2.29
452 453 1.671166 GGTTGGCAAGCCCGAAAAT 59.329 52.632 18.29 0.00 35.87 1.82
453 454 0.892063 GGTTGGCAAGCCCGAAAATA 59.108 50.000 18.29 0.00 35.87 1.40
454 455 1.403647 GGTTGGCAAGCCCGAAAATAC 60.404 52.381 18.29 0.00 35.87 1.89
455 456 1.271102 GTTGGCAAGCCCGAAAATACA 59.729 47.619 8.89 0.00 35.87 2.29
456 457 1.621992 TGGCAAGCCCGAAAATACAA 58.378 45.000 8.89 0.00 35.87 2.41
457 458 1.964223 TGGCAAGCCCGAAAATACAAA 59.036 42.857 8.89 0.00 35.87 2.83
458 459 2.029470 TGGCAAGCCCGAAAATACAAAG 60.029 45.455 8.89 0.00 35.87 2.77
459 460 2.606108 GCAAGCCCGAAAATACAAAGG 58.394 47.619 0.00 0.00 0.00 3.11
460 461 2.029380 GCAAGCCCGAAAATACAAAGGT 60.029 45.455 0.00 0.00 0.00 3.50
461 462 3.574614 CAAGCCCGAAAATACAAAGGTG 58.425 45.455 0.00 0.00 0.00 4.00
462 463 3.149005 AGCCCGAAAATACAAAGGTGA 57.851 42.857 0.00 0.00 0.00 4.02
463 464 3.492337 AGCCCGAAAATACAAAGGTGAA 58.508 40.909 0.00 0.00 0.00 3.18
464 465 3.254903 AGCCCGAAAATACAAAGGTGAAC 59.745 43.478 0.00 0.00 0.00 3.18
465 466 3.004944 GCCCGAAAATACAAAGGTGAACA 59.995 43.478 0.00 0.00 0.00 3.18
466 467 4.321675 GCCCGAAAATACAAAGGTGAACAT 60.322 41.667 0.00 0.00 0.00 2.71
467 468 5.160641 CCCGAAAATACAAAGGTGAACATG 58.839 41.667 0.00 0.00 0.00 3.21
468 469 5.160641 CCGAAAATACAAAGGTGAACATGG 58.839 41.667 0.00 0.00 0.00 3.66
469 470 5.278758 CCGAAAATACAAAGGTGAACATGGT 60.279 40.000 0.00 0.00 0.00 3.55
470 471 6.212955 CGAAAATACAAAGGTGAACATGGTT 58.787 36.000 0.00 0.00 0.00 3.67
471 472 6.362283 CGAAAATACAAAGGTGAACATGGTTC 59.638 38.462 0.00 2.25 0.00 3.62
472 473 5.722021 AATACAAAGGTGAACATGGTTCC 57.278 39.130 6.64 0.00 0.00 3.62
473 474 3.025322 ACAAAGGTGAACATGGTTCCA 57.975 42.857 6.64 0.00 0.00 3.53
474 475 2.693074 ACAAAGGTGAACATGGTTCCAC 59.307 45.455 6.64 1.84 0.00 4.02
475 476 2.692557 CAAAGGTGAACATGGTTCCACA 59.307 45.455 5.09 0.00 0.00 4.17
476 477 1.981256 AGGTGAACATGGTTCCACAC 58.019 50.000 5.09 0.00 0.00 3.82
477 478 0.591170 GGTGAACATGGTTCCACACG 59.409 55.000 5.09 0.00 0.00 4.49
478 479 0.040425 GTGAACATGGTTCCACACGC 60.040 55.000 6.64 0.00 0.00 5.34
479 480 0.464554 TGAACATGGTTCCACACGCA 60.465 50.000 6.64 0.00 0.00 5.24
480 481 0.040425 GAACATGGTTCCACACGCAC 60.040 55.000 0.00 0.00 0.00 5.34
481 482 1.452145 AACATGGTTCCACACGCACC 61.452 55.000 0.00 0.00 0.00 5.01
482 483 2.282180 ATGGTTCCACACGCACCC 60.282 61.111 0.00 0.00 0.00 4.61
483 484 3.126703 ATGGTTCCACACGCACCCA 62.127 57.895 0.00 0.00 0.00 4.51
484 485 3.284449 GGTTCCACACGCACCCAC 61.284 66.667 0.00 0.00 0.00 4.61
485 486 3.645975 GTTCCACACGCACCCACG 61.646 66.667 0.00 0.00 39.50 4.94
492 493 4.590487 ACGCACCCACGTGAATAG 57.410 55.556 19.30 6.79 46.28 1.73
493 494 1.669440 ACGCACCCACGTGAATAGT 59.331 52.632 19.30 7.45 46.28 2.12
494 495 0.889994 ACGCACCCACGTGAATAGTA 59.110 50.000 19.30 0.00 46.28 1.82
495 496 1.273048 ACGCACCCACGTGAATAGTAA 59.727 47.619 19.30 0.00 46.28 2.24
496 497 2.288948 ACGCACCCACGTGAATAGTAAA 60.289 45.455 19.30 0.00 46.28 2.01
497 498 2.933906 CGCACCCACGTGAATAGTAAAT 59.066 45.455 19.30 0.00 43.14 1.40
498 499 3.372822 CGCACCCACGTGAATAGTAAATT 59.627 43.478 19.30 0.00 43.14 1.82
499 500 4.493545 CGCACCCACGTGAATAGTAAATTC 60.494 45.833 19.30 0.00 43.14 2.17
500 501 4.393680 GCACCCACGTGAATAGTAAATTCA 59.606 41.667 19.30 0.00 43.14 2.57
501 502 5.106475 GCACCCACGTGAATAGTAAATTCAA 60.106 40.000 19.30 0.00 43.14 2.69
502 503 6.568844 GCACCCACGTGAATAGTAAATTCAAA 60.569 38.462 19.30 0.00 43.14 2.69
503 504 7.364200 CACCCACGTGAATAGTAAATTCAAAA 58.636 34.615 19.30 0.00 43.14 2.44
504 505 7.863375 CACCCACGTGAATAGTAAATTCAAAAA 59.137 33.333 19.30 0.00 43.14 1.94
559 560 9.758651 AAATTTTAGGTATCAAACTTGGTTCAC 57.241 29.630 0.00 0.00 0.00 3.18
560 561 6.887626 TTTAGGTATCAAACTTGGTTCACC 57.112 37.500 0.00 0.00 0.00 4.02
561 562 4.447138 AGGTATCAAACTTGGTTCACCA 57.553 40.909 0.00 0.00 45.94 4.17
562 563 4.998051 AGGTATCAAACTTGGTTCACCAT 58.002 39.130 0.00 0.00 46.97 3.55
563 564 5.393866 AGGTATCAAACTTGGTTCACCATT 58.606 37.500 0.00 0.00 46.97 3.16
564 565 5.476945 AGGTATCAAACTTGGTTCACCATTC 59.523 40.000 0.00 0.00 46.97 2.67
565 566 5.476945 GGTATCAAACTTGGTTCACCATTCT 59.523 40.000 0.00 0.00 46.97 2.40
566 567 6.657541 GGTATCAAACTTGGTTCACCATTCTA 59.342 38.462 0.00 0.00 46.97 2.10
567 568 6.575162 ATCAAACTTGGTTCACCATTCTAC 57.425 37.500 0.00 0.00 46.97 2.59
568 569 5.690865 TCAAACTTGGTTCACCATTCTACT 58.309 37.500 0.00 0.00 46.97 2.57
569 570 5.763204 TCAAACTTGGTTCACCATTCTACTC 59.237 40.000 0.00 0.00 46.97 2.59
570 571 4.974645 ACTTGGTTCACCATTCTACTCA 57.025 40.909 0.00 0.00 46.97 3.41
571 572 5.304686 ACTTGGTTCACCATTCTACTCAA 57.695 39.130 0.00 0.00 46.97 3.02
572 573 5.308825 ACTTGGTTCACCATTCTACTCAAG 58.691 41.667 0.00 0.00 46.97 3.02
573 574 4.974645 TGGTTCACCATTCTACTCAAGT 57.025 40.909 0.00 0.00 42.01 3.16
574 575 4.641396 TGGTTCACCATTCTACTCAAGTG 58.359 43.478 0.00 0.00 42.01 3.16
575 576 4.102524 TGGTTCACCATTCTACTCAAGTGT 59.897 41.667 0.00 0.00 42.01 3.55
576 577 4.452455 GGTTCACCATTCTACTCAAGTGTG 59.548 45.833 0.00 0.00 35.64 3.82
577 578 5.297547 GTTCACCATTCTACTCAAGTGTGA 58.702 41.667 0.00 0.00 0.00 3.58
578 579 5.545063 TCACCATTCTACTCAAGTGTGAA 57.455 39.130 0.00 0.00 31.88 3.18
579 580 5.541845 TCACCATTCTACTCAAGTGTGAAG 58.458 41.667 0.00 0.00 31.88 3.02
580 581 5.070446 TCACCATTCTACTCAAGTGTGAAGT 59.930 40.000 0.00 0.00 31.88 3.01
581 582 5.760253 CACCATTCTACTCAAGTGTGAAGTT 59.240 40.000 0.00 0.00 31.88 2.66
582 583 6.260936 CACCATTCTACTCAAGTGTGAAGTTT 59.739 38.462 0.00 0.00 31.88 2.66
583 584 6.483640 ACCATTCTACTCAAGTGTGAAGTTTC 59.516 38.462 0.00 0.00 31.88 2.78
584 585 6.483307 CCATTCTACTCAAGTGTGAAGTTTCA 59.517 38.462 0.00 0.00 31.88 2.69
585 586 7.173907 CCATTCTACTCAAGTGTGAAGTTTCAT 59.826 37.037 0.00 0.00 39.73 2.57
586 587 7.482654 TTCTACTCAAGTGTGAAGTTTCATG 57.517 36.000 0.00 0.00 39.73 3.07
587 588 6.816136 TCTACTCAAGTGTGAAGTTTCATGA 58.184 36.000 0.00 0.00 39.73 3.07
588 589 7.272244 TCTACTCAAGTGTGAAGTTTCATGAA 58.728 34.615 3.38 3.38 39.73 2.57
589 590 6.949352 ACTCAAGTGTGAAGTTTCATGAAT 57.051 33.333 9.40 0.00 39.73 2.57
590 591 7.338800 ACTCAAGTGTGAAGTTTCATGAATT 57.661 32.000 9.40 0.97 39.73 2.17
591 592 8.450578 ACTCAAGTGTGAAGTTTCATGAATTA 57.549 30.769 9.40 0.00 39.73 1.40
592 593 8.345565 ACTCAAGTGTGAAGTTTCATGAATTAC 58.654 33.333 9.40 5.54 39.73 1.89
593 594 8.450578 TCAAGTGTGAAGTTTCATGAATTACT 57.549 30.769 9.40 7.98 39.73 2.24
594 595 8.344831 TCAAGTGTGAAGTTTCATGAATTACTG 58.655 33.333 9.40 0.00 39.73 2.74
595 596 8.344831 CAAGTGTGAAGTTTCATGAATTACTGA 58.655 33.333 9.40 0.00 39.73 3.41
596 597 7.865707 AGTGTGAAGTTTCATGAATTACTGAC 58.134 34.615 9.40 11.15 39.73 3.51
597 598 7.498900 AGTGTGAAGTTTCATGAATTACTGACA 59.501 33.333 9.40 13.28 39.73 3.58
598 599 8.292448 GTGTGAAGTTTCATGAATTACTGACAT 58.708 33.333 18.96 6.11 39.73 3.06
599 600 8.506437 TGTGAAGTTTCATGAATTACTGACATC 58.494 33.333 9.40 6.49 39.73 3.06
600 601 7.965107 GTGAAGTTTCATGAATTACTGACATCC 59.035 37.037 9.40 2.15 39.73 3.51
601 602 6.668541 AGTTTCATGAATTACTGACATCCG 57.331 37.500 9.40 0.00 0.00 4.18
602 603 6.173339 AGTTTCATGAATTACTGACATCCGT 58.827 36.000 9.40 0.00 0.00 4.69
603 604 6.092670 AGTTTCATGAATTACTGACATCCGTG 59.907 38.462 9.40 0.00 0.00 4.94
604 605 5.337578 TCATGAATTACTGACATCCGTGA 57.662 39.130 0.00 0.00 0.00 4.35
605 606 5.917462 TCATGAATTACTGACATCCGTGAT 58.083 37.500 0.00 0.00 0.00 3.06
606 607 7.049799 TCATGAATTACTGACATCCGTGATA 57.950 36.000 0.00 0.00 0.00 2.15
607 608 7.670364 TCATGAATTACTGACATCCGTGATAT 58.330 34.615 0.00 0.00 0.00 1.63
608 609 8.150296 TCATGAATTACTGACATCCGTGATATT 58.850 33.333 0.00 0.00 0.00 1.28
609 610 7.946655 TGAATTACTGACATCCGTGATATTC 57.053 36.000 0.00 0.00 0.00 1.75
610 611 7.726216 TGAATTACTGACATCCGTGATATTCT 58.274 34.615 0.00 0.00 0.00 2.40
611 612 7.867909 TGAATTACTGACATCCGTGATATTCTC 59.132 37.037 0.00 0.00 0.00 2.87
612 613 6.709018 TTACTGACATCCGTGATATTCTCA 57.291 37.500 0.00 0.00 0.00 3.27
613 614 5.193663 ACTGACATCCGTGATATTCTCAG 57.806 43.478 0.00 0.00 33.51 3.35
614 615 4.646945 ACTGACATCCGTGATATTCTCAGT 59.353 41.667 0.00 0.00 33.51 3.41
615 616 4.936891 TGACATCCGTGATATTCTCAGTG 58.063 43.478 0.00 0.00 33.51 3.66
616 617 4.644685 TGACATCCGTGATATTCTCAGTGA 59.355 41.667 0.00 0.00 33.51 3.41
617 618 5.127031 TGACATCCGTGATATTCTCAGTGAA 59.873 40.000 0.00 0.00 39.24 3.18
618 619 5.595885 ACATCCGTGATATTCTCAGTGAAG 58.404 41.667 0.00 0.00 38.18 3.02
619 620 5.360999 ACATCCGTGATATTCTCAGTGAAGA 59.639 40.000 0.00 0.00 38.18 2.87
620 621 5.914898 TCCGTGATATTCTCAGTGAAGAA 57.085 39.130 0.00 1.03 39.49 2.52
621 622 6.280855 TCCGTGATATTCTCAGTGAAGAAA 57.719 37.500 8.47 0.00 38.69 2.52
622 623 6.697395 TCCGTGATATTCTCAGTGAAGAAAA 58.303 36.000 8.47 0.00 38.69 2.29
623 624 7.331026 TCCGTGATATTCTCAGTGAAGAAAAT 58.669 34.615 8.47 3.24 38.69 1.82
624 625 8.474831 TCCGTGATATTCTCAGTGAAGAAAATA 58.525 33.333 8.47 4.92 38.69 1.40
625 626 8.543774 CCGTGATATTCTCAGTGAAGAAAATAC 58.456 37.037 8.47 6.06 38.69 1.89
626 627 9.087424 CGTGATATTCTCAGTGAAGAAAATACA 57.913 33.333 8.47 5.57 38.69 2.29
631 632 6.968131 TCTCAGTGAAGAAAATACAATCCG 57.032 37.500 0.00 0.00 0.00 4.18
632 633 5.874810 TCTCAGTGAAGAAAATACAATCCGG 59.125 40.000 0.00 0.00 0.00 5.14
633 634 4.394920 TCAGTGAAGAAAATACAATCCGGC 59.605 41.667 0.00 0.00 0.00 6.13
634 635 3.694566 AGTGAAGAAAATACAATCCGGCC 59.305 43.478 0.00 0.00 0.00 6.13
635 636 3.020984 TGAAGAAAATACAATCCGGCCC 58.979 45.455 0.00 0.00 0.00 5.80
636 637 3.288092 GAAGAAAATACAATCCGGCCCT 58.712 45.455 0.00 0.00 0.00 5.19
637 638 3.382083 AGAAAATACAATCCGGCCCTT 57.618 42.857 0.00 0.00 0.00 3.95
638 639 4.513406 AGAAAATACAATCCGGCCCTTA 57.487 40.909 0.00 0.00 0.00 2.69
639 640 4.204799 AGAAAATACAATCCGGCCCTTAC 58.795 43.478 0.00 0.00 0.00 2.34
640 641 3.945640 AAATACAATCCGGCCCTTACT 57.054 42.857 0.00 0.00 0.00 2.24
641 642 5.131475 AGAAAATACAATCCGGCCCTTACTA 59.869 40.000 0.00 0.00 0.00 1.82
642 643 5.578157 AAATACAATCCGGCCCTTACTAT 57.422 39.130 0.00 0.00 0.00 2.12
643 644 5.578157 AATACAATCCGGCCCTTACTATT 57.422 39.130 0.00 0.00 0.00 1.73
644 645 3.487120 ACAATCCGGCCCTTACTATTC 57.513 47.619 0.00 0.00 0.00 1.75
645 646 2.775384 ACAATCCGGCCCTTACTATTCA 59.225 45.455 0.00 0.00 0.00 2.57
646 647 3.394606 ACAATCCGGCCCTTACTATTCAT 59.605 43.478 0.00 0.00 0.00 2.57
647 648 3.983044 ATCCGGCCCTTACTATTCATC 57.017 47.619 0.00 0.00 0.00 2.92
648 649 2.684943 TCCGGCCCTTACTATTCATCA 58.315 47.619 0.00 0.00 0.00 3.07
649 650 3.042682 TCCGGCCCTTACTATTCATCAA 58.957 45.455 0.00 0.00 0.00 2.57
650 651 3.139077 CCGGCCCTTACTATTCATCAAC 58.861 50.000 0.00 0.00 0.00 3.18
651 652 3.433031 CCGGCCCTTACTATTCATCAACA 60.433 47.826 0.00 0.00 0.00 3.33
652 653 4.196193 CGGCCCTTACTATTCATCAACAA 58.804 43.478 0.00 0.00 0.00 2.83
653 654 4.821805 CGGCCCTTACTATTCATCAACAAT 59.178 41.667 0.00 0.00 0.00 2.71
654 655 5.277974 CGGCCCTTACTATTCATCAACAATG 60.278 44.000 0.00 0.00 36.65 2.82
655 656 5.594317 GGCCCTTACTATTCATCAACAATGT 59.406 40.000 0.00 0.00 36.68 2.71
656 657 6.096846 GGCCCTTACTATTCATCAACAATGTT 59.903 38.462 0.00 0.00 36.68 2.71
657 658 7.363793 GGCCCTTACTATTCATCAACAATGTTT 60.364 37.037 0.00 0.00 36.68 2.83
658 659 8.034804 GCCCTTACTATTCATCAACAATGTTTT 58.965 33.333 0.00 0.00 36.68 2.43
659 660 9.927668 CCCTTACTATTCATCAACAATGTTTTT 57.072 29.630 0.00 0.00 36.68 1.94
689 690 7.368480 AGCTTCCATTTTGTCATTTTTATGC 57.632 32.000 0.00 0.00 0.00 3.14
690 691 6.935771 AGCTTCCATTTTGTCATTTTTATGCA 59.064 30.769 0.00 0.00 0.00 3.96
691 692 7.118680 AGCTTCCATTTTGTCATTTTTATGCAG 59.881 33.333 0.00 0.00 0.00 4.41
692 693 7.118101 GCTTCCATTTTGTCATTTTTATGCAGA 59.882 33.333 0.00 0.00 0.00 4.26
693 694 8.899427 TTCCATTTTGTCATTTTTATGCAGAA 57.101 26.923 0.00 0.00 0.00 3.02
694 695 9.504708 TTCCATTTTGTCATTTTTATGCAGAAT 57.495 25.926 0.00 0.00 0.00 2.40
695 696 8.937884 TCCATTTTGTCATTTTTATGCAGAATG 58.062 29.630 0.00 1.83 40.87 2.67
696 697 8.723311 CCATTTTGTCATTTTTATGCAGAATGT 58.277 29.630 0.00 0.00 39.31 2.71
697 698 9.749490 CATTTTGTCATTTTTATGCAGAATGTC 57.251 29.630 0.00 0.72 39.31 3.06
698 699 8.883954 TTTTGTCATTTTTATGCAGAATGTCA 57.116 26.923 0.00 3.18 39.31 3.58
699 700 8.883954 TTTGTCATTTTTATGCAGAATGTCAA 57.116 26.923 15.94 15.94 37.18 3.18
700 701 8.523523 TTGTCATTTTTATGCAGAATGTCAAG 57.476 30.769 15.94 0.62 39.31 3.02
701 702 7.092079 TGTCATTTTTATGCAGAATGTCAAGG 58.908 34.615 0.00 0.00 39.31 3.61
702 703 7.039853 TGTCATTTTTATGCAGAATGTCAAGGA 60.040 33.333 0.00 0.00 39.31 3.36
703 704 7.977853 GTCATTTTTATGCAGAATGTCAAGGAT 59.022 33.333 0.00 0.00 39.31 3.24
704 705 7.977293 TCATTTTTATGCAGAATGTCAAGGATG 59.023 33.333 0.00 0.00 39.31 3.51
705 706 6.839124 TTTTATGCAGAATGTCAAGGATGT 57.161 33.333 0.00 0.00 39.31 3.06
706 707 6.441093 TTTATGCAGAATGTCAAGGATGTC 57.559 37.500 0.00 0.00 39.31 3.06
707 708 3.421919 TGCAGAATGTCAAGGATGTCA 57.578 42.857 0.00 0.00 39.31 3.58
708 709 3.959293 TGCAGAATGTCAAGGATGTCAT 58.041 40.909 0.00 0.00 39.31 3.06
709 710 4.338012 TGCAGAATGTCAAGGATGTCATT 58.662 39.130 1.87 1.87 44.40 2.57
710 711 4.768448 TGCAGAATGTCAAGGATGTCATTT 59.232 37.500 3.52 0.00 42.66 2.32
711 712 5.106038 TGCAGAATGTCAAGGATGTCATTTC 60.106 40.000 3.52 0.00 42.66 2.17
712 713 5.125097 GCAGAATGTCAAGGATGTCATTTCT 59.875 40.000 3.52 0.00 42.66 2.52
713 714 6.349944 GCAGAATGTCAAGGATGTCATTTCTT 60.350 38.462 3.52 0.00 42.66 2.52
714 715 7.249147 CAGAATGTCAAGGATGTCATTTCTTC 58.751 38.462 3.52 0.00 42.66 2.87
715 716 5.808042 ATGTCAAGGATGTCATTTCTTCG 57.192 39.130 0.00 0.00 32.45 3.79
716 717 4.641396 TGTCAAGGATGTCATTTCTTCGT 58.359 39.130 0.00 0.00 0.00 3.85
717 718 4.452114 TGTCAAGGATGTCATTTCTTCGTG 59.548 41.667 0.00 0.00 0.00 4.35
718 719 4.690748 GTCAAGGATGTCATTTCTTCGTGA 59.309 41.667 0.00 0.00 0.00 4.35
719 720 5.179368 GTCAAGGATGTCATTTCTTCGTGAA 59.821 40.000 0.00 0.00 0.00 3.18
721 722 5.613358 AGGATGTCATTTCTTCGTGAAAC 57.387 39.130 8.09 0.07 46.08 2.78
722 723 5.308825 AGGATGTCATTTCTTCGTGAAACT 58.691 37.500 8.09 0.00 46.08 2.66
723 724 5.765182 AGGATGTCATTTCTTCGTGAAACTT 59.235 36.000 8.09 0.00 46.08 2.66
724 725 6.073003 AGGATGTCATTTCTTCGTGAAACTTC 60.073 38.462 8.09 5.58 46.08 3.01
725 726 6.293407 GGATGTCATTTCTTCGTGAAACTTCA 60.293 38.462 8.09 7.97 46.08 3.02
726 727 6.618287 TGTCATTTCTTCGTGAAACTTCAT 57.382 33.333 8.09 0.00 46.08 2.57
727 728 7.722795 TGTCATTTCTTCGTGAAACTTCATA 57.277 32.000 8.09 0.00 46.08 2.15
728 729 7.572759 TGTCATTTCTTCGTGAAACTTCATAC 58.427 34.615 8.09 3.49 46.08 2.39
729 730 6.732392 GTCATTTCTTCGTGAAACTTCATACG 59.268 38.462 8.09 0.00 46.08 3.06
730 731 4.640805 TTCTTCGTGAAACTTCATACGC 57.359 40.909 0.00 0.00 39.73 4.42
731 732 2.659757 TCTTCGTGAAACTTCATACGCG 59.340 45.455 3.53 3.53 39.73 6.01
732 733 2.334971 TCGTGAAACTTCATACGCGA 57.665 45.000 15.93 0.00 41.60 5.87
733 734 2.663808 TCGTGAAACTTCATACGCGAA 58.336 42.857 15.93 0.00 41.08 4.70
734 735 3.247442 TCGTGAAACTTCATACGCGAAT 58.753 40.909 15.93 0.00 41.08 3.34
735 736 4.413969 TCGTGAAACTTCATACGCGAATA 58.586 39.130 15.93 0.00 41.08 1.75
736 737 5.038683 TCGTGAAACTTCATACGCGAATAT 58.961 37.500 15.93 0.00 41.08 1.28
737 738 6.200808 TCGTGAAACTTCATACGCGAATATA 58.799 36.000 15.93 0.00 41.08 0.86
738 739 6.141211 TCGTGAAACTTCATACGCGAATATAC 59.859 38.462 15.93 0.00 41.08 1.47
739 740 6.578691 GTGAAACTTCATACGCGAATATACC 58.421 40.000 15.93 0.00 39.73 2.73
740 741 5.400188 TGAAACTTCATACGCGAATATACCG 59.600 40.000 15.93 0.00 31.01 4.02
741 742 3.829948 ACTTCATACGCGAATATACCGG 58.170 45.455 15.93 0.00 0.00 5.28
742 743 3.254166 ACTTCATACGCGAATATACCGGT 59.746 43.478 15.93 13.98 0.00 5.28
743 744 3.476295 TCATACGCGAATATACCGGTC 57.524 47.619 12.40 0.00 0.00 4.79
744 745 2.159667 TCATACGCGAATATACCGGTCG 60.160 50.000 12.40 9.78 37.82 4.79
745 746 1.507562 TACGCGAATATACCGGTCGA 58.492 50.000 12.40 0.00 36.92 4.20
746 747 0.040958 ACGCGAATATACCGGTCGAC 60.041 55.000 12.40 7.13 36.92 4.20
747 748 0.236711 CGCGAATATACCGGTCGACT 59.763 55.000 12.40 0.00 36.92 4.18
748 749 1.460743 CGCGAATATACCGGTCGACTA 59.539 52.381 12.40 0.00 36.92 2.59
749 750 2.094894 CGCGAATATACCGGTCGACTAT 59.905 50.000 12.40 8.20 36.92 2.12
750 751 3.423571 GCGAATATACCGGTCGACTATG 58.576 50.000 12.40 6.74 36.92 2.23
751 752 3.423571 CGAATATACCGGTCGACTATGC 58.576 50.000 12.40 2.29 36.92 3.14
752 753 3.120095 CGAATATACCGGTCGACTATGCA 60.120 47.826 12.40 0.00 36.92 3.96
753 754 4.438336 CGAATATACCGGTCGACTATGCAT 60.438 45.833 12.40 3.79 36.92 3.96
754 755 5.220719 CGAATATACCGGTCGACTATGCATA 60.221 44.000 12.40 6.20 36.92 3.14
755 756 6.512903 CGAATATACCGGTCGACTATGCATAT 60.513 42.308 12.40 2.19 36.92 1.78
756 757 4.634184 ATACCGGTCGACTATGCATATC 57.366 45.455 12.40 6.49 0.00 1.63
757 758 2.235891 ACCGGTCGACTATGCATATCA 58.764 47.619 16.46 0.00 0.00 2.15
758 759 2.030185 ACCGGTCGACTATGCATATCAC 60.030 50.000 16.46 8.00 0.00 3.06
759 760 2.030274 CCGGTCGACTATGCATATCACA 60.030 50.000 16.46 0.00 0.00 3.58
760 761 3.552068 CCGGTCGACTATGCATATCACAA 60.552 47.826 16.46 0.00 0.00 3.33
761 762 4.048504 CGGTCGACTATGCATATCACAAA 58.951 43.478 16.46 0.00 0.00 2.83
762 763 4.506288 CGGTCGACTATGCATATCACAAAA 59.494 41.667 16.46 0.00 0.00 2.44
763 764 5.006261 CGGTCGACTATGCATATCACAAAAA 59.994 40.000 16.46 0.00 0.00 1.94
821 822 9.747898 TTTTTACTATTGATAAGGGATGTGTGT 57.252 29.630 0.00 0.00 0.00 3.72
822 823 8.731275 TTTACTATTGATAAGGGATGTGTGTG 57.269 34.615 0.00 0.00 0.00 3.82
823 824 5.684704 ACTATTGATAAGGGATGTGTGTGG 58.315 41.667 0.00 0.00 0.00 4.17
824 825 4.860802 ATTGATAAGGGATGTGTGTGGA 57.139 40.909 0.00 0.00 0.00 4.02
825 826 4.649267 TTGATAAGGGATGTGTGTGGAA 57.351 40.909 0.00 0.00 0.00 3.53
826 827 3.950397 TGATAAGGGATGTGTGTGGAAC 58.050 45.455 0.00 0.00 37.35 3.62
827 828 2.871096 TAAGGGATGTGTGTGGAACC 57.129 50.000 0.00 0.00 34.36 3.62
828 829 0.850100 AAGGGATGTGTGTGGAACCA 59.150 50.000 0.00 0.00 34.36 3.67
829 830 1.075601 AGGGATGTGTGTGGAACCAT 58.924 50.000 0.00 0.00 34.36 3.55
830 831 2.274542 AGGGATGTGTGTGGAACCATA 58.725 47.619 0.00 0.00 34.36 2.74
831 832 2.852449 AGGGATGTGTGTGGAACCATAT 59.148 45.455 0.00 0.00 34.36 1.78
832 833 3.269381 AGGGATGTGTGTGGAACCATATT 59.731 43.478 0.00 0.00 34.36 1.28
833 834 3.632145 GGGATGTGTGTGGAACCATATTC 59.368 47.826 0.00 0.00 34.36 1.75
834 835 4.269183 GGATGTGTGTGGAACCATATTCA 58.731 43.478 0.00 0.00 34.36 2.57
835 836 4.096382 GGATGTGTGTGGAACCATATTCAC 59.904 45.833 0.00 1.48 34.36 3.18
836 837 4.092116 TGTGTGTGGAACCATATTCACA 57.908 40.909 9.77 9.77 37.73 3.58
837 838 4.464947 TGTGTGTGGAACCATATTCACAA 58.535 39.130 13.75 5.45 41.05 3.33
838 839 4.889995 TGTGTGTGGAACCATATTCACAAA 59.110 37.500 13.75 8.24 41.05 2.83
839 840 5.360999 TGTGTGTGGAACCATATTCACAAAA 59.639 36.000 13.75 6.00 41.05 2.44
840 841 6.041409 TGTGTGTGGAACCATATTCACAAAAT 59.959 34.615 13.75 0.00 41.05 1.82
841 842 6.586082 GTGTGTGGAACCATATTCACAAAATC 59.414 38.462 13.75 2.49 41.05 2.17
842 843 6.099341 GTGTGGAACCATATTCACAAAATCC 58.901 40.000 0.00 0.00 41.05 3.01
843 844 5.105957 TGTGGAACCATATTCACAAAATCCG 60.106 40.000 0.00 0.00 37.22 4.18
844 845 5.013547 TGGAACCATATTCACAAAATCCGT 58.986 37.500 0.00 0.00 0.00 4.69
845 846 5.105957 TGGAACCATATTCACAAAATCCGTG 60.106 40.000 0.00 0.00 35.63 4.94
846 847 5.105917 GGAACCATATTCACAAAATCCGTGT 60.106 40.000 0.00 0.00 35.79 4.49
847 848 5.560966 ACCATATTCACAAAATCCGTGTC 57.439 39.130 0.00 0.00 35.79 3.67
848 849 4.398044 ACCATATTCACAAAATCCGTGTCC 59.602 41.667 0.00 0.00 35.79 4.02
849 850 4.202010 CCATATTCACAAAATCCGTGTCCC 60.202 45.833 0.00 0.00 35.79 4.46
850 851 2.649531 TTCACAAAATCCGTGTCCCT 57.350 45.000 0.00 0.00 35.79 4.20
851 852 1.890876 TCACAAAATCCGTGTCCCTG 58.109 50.000 0.00 0.00 35.79 4.45
852 853 0.881118 CACAAAATCCGTGTCCCTGG 59.119 55.000 0.00 0.00 0.00 4.45
853 854 0.893727 ACAAAATCCGTGTCCCTGGC 60.894 55.000 0.00 0.00 0.00 4.85
854 855 0.893270 CAAAATCCGTGTCCCTGGCA 60.893 55.000 0.00 0.00 0.00 4.92
855 856 0.178975 AAAATCCGTGTCCCTGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
856 857 0.609131 AAATCCGTGTCCCTGGCAAG 60.609 55.000 0.00 0.00 0.00 4.01
857 858 3.628646 ATCCGTGTCCCTGGCAAGC 62.629 63.158 0.00 0.00 0.00 4.01
859 860 4.641645 CGTGTCCCTGGCAAGCCA 62.642 66.667 13.93 13.93 45.02 4.75
860 861 2.036256 GTGTCCCTGGCAAGCCAT 59.964 61.111 15.09 0.00 46.15 4.40
861 862 2.036098 TGTCCCTGGCAAGCCATG 59.964 61.111 15.09 11.80 46.15 3.66
883 884 3.187842 GGTAATTTTGCTCGGACGAACTT 59.812 43.478 0.00 0.00 0.00 2.66
884 885 2.969443 ATTTTGCTCGGACGAACTTG 57.031 45.000 0.00 0.00 0.00 3.16
885 886 1.658994 TTTTGCTCGGACGAACTTGT 58.341 45.000 0.00 0.00 0.00 3.16
946 1037 2.699846 AGCCCAATCTGCAAGTTGAAAA 59.300 40.909 7.16 0.00 33.76 2.29
957 1048 2.577225 GTTGAAAACCGCACAGCAC 58.423 52.632 0.00 0.00 42.21 4.40
958 1049 0.179150 GTTGAAAACCGCACAGCACA 60.179 50.000 0.00 0.00 42.21 4.57
959 1050 0.100325 TTGAAAACCGCACAGCACAG 59.900 50.000 0.00 0.00 0.00 3.66
960 1051 1.029408 TGAAAACCGCACAGCACAGT 61.029 50.000 0.00 0.00 0.00 3.55
961 1052 0.592247 GAAAACCGCACAGCACAGTG 60.592 55.000 0.00 0.00 42.37 3.66
1026 1125 1.969064 CCGACCAAACCGCAATCCA 60.969 57.895 0.00 0.00 0.00 3.41
1401 1500 2.600769 AAGTGCGACGACCTCCCT 60.601 61.111 0.00 0.00 0.00 4.20
1479 1578 4.662961 CTCTGCACACACGCCCGA 62.663 66.667 0.00 0.00 0.00 5.14
1492 1591 4.135153 CCCGACTCGCCTCTGTGG 62.135 72.222 0.00 0.00 39.35 4.17
1602 1701 4.021925 GCCTCTGCTCACCGGGTT 62.022 66.667 6.32 0.00 33.53 4.11
1623 1722 5.047377 GGTTTTTGATGAAATGCCTACCAGA 60.047 40.000 0.00 0.00 0.00 3.86
1630 1729 2.918712 AATGCCTACCAGAGATTCCG 57.081 50.000 0.00 0.00 0.00 4.30
1632 1731 1.069935 GCCTACCAGAGATTCCGCC 59.930 63.158 0.00 0.00 0.00 6.13
1878 2211 1.886313 CCAGATAGGCAGCACAGCG 60.886 63.158 0.00 0.00 34.64 5.18
2016 2349 6.664816 TCAATGCTTTTAGGGAGATTGAACAT 59.335 34.615 0.00 0.00 29.23 2.71
2120 2510 1.669779 GATGCAAGCTCAGGCAGTTAG 59.330 52.381 12.35 0.00 44.24 2.34
2325 2715 0.969917 TCCAAACAATGCCGATGGGG 60.970 55.000 0.00 0.00 39.58 4.96
2355 2745 2.282745 GCTCTTGGTGCCCTGCTT 60.283 61.111 0.00 0.00 0.00 3.91
2529 2983 5.344933 GTCGCTGATGAAAACAAAATTACCC 59.655 40.000 0.00 0.00 0.00 3.69
2582 3036 2.034687 GCAGAGGGAGCAAGGCAA 59.965 61.111 0.00 0.00 0.00 4.52
2584 3038 1.681666 CAGAGGGAGCAAGGCAAGA 59.318 57.895 0.00 0.00 0.00 3.02
2803 3426 7.034397 GCGTAGGTATTCAGAGTTACTTTTCT 58.966 38.462 0.00 0.00 0.00 2.52
2854 3488 8.830201 CAGTTTAAGCTCTGCATCTTAGATAT 57.170 34.615 0.00 0.00 0.00 1.63
2937 3571 5.182001 ACAGCATGGAAAAATACACTCTGAC 59.818 40.000 0.00 0.00 43.62 3.51
3060 3694 8.783833 TTATTAGAGAATCAGATAAGCATGGC 57.216 34.615 0.00 0.00 37.82 4.40
3204 3840 5.869579 ACCGTTTGATAGAGCATATCCAAT 58.130 37.500 6.52 0.00 0.00 3.16
3414 4053 6.381801 AGCAACCGTATTTTCAGAAAGATTG 58.618 36.000 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.875102 TCTCTCAATCCCTCCATGGA 57.125 50.000 15.27 15.27 39.18 3.41
4 5 4.166539 ACTATCTCTCAATCCCTCCATGG 58.833 47.826 4.97 4.97 0.00 3.66
5 6 6.574073 GCTTACTATCTCTCAATCCCTCCATG 60.574 46.154 0.00 0.00 0.00 3.66
6 7 5.483583 GCTTACTATCTCTCAATCCCTCCAT 59.516 44.000 0.00 0.00 0.00 3.41
7 8 4.835615 GCTTACTATCTCTCAATCCCTCCA 59.164 45.833 0.00 0.00 0.00 3.86
8 9 5.083821 AGCTTACTATCTCTCAATCCCTCC 58.916 45.833 0.00 0.00 0.00 4.30
9 10 5.106317 CGAGCTTACTATCTCTCAATCCCTC 60.106 48.000 0.00 0.00 0.00 4.30
10 11 4.764823 CGAGCTTACTATCTCTCAATCCCT 59.235 45.833 0.00 0.00 0.00 4.20
11 12 4.762765 TCGAGCTTACTATCTCTCAATCCC 59.237 45.833 0.00 0.00 0.00 3.85
12 13 5.950758 TCGAGCTTACTATCTCTCAATCC 57.049 43.478 0.00 0.00 0.00 3.01
13 14 7.197071 TCTTCGAGCTTACTATCTCTCAATC 57.803 40.000 0.00 0.00 0.00 2.67
26 27 4.330944 TTGTTGACCTTCTTCGAGCTTA 57.669 40.909 0.00 0.00 0.00 3.09
34 35 1.827245 GCCCCCATTGTTGACCTTCTT 60.827 52.381 0.00 0.00 0.00 2.52
36 37 1.257750 GGCCCCCATTGTTGACCTTC 61.258 60.000 0.00 0.00 0.00 3.46
57 58 4.636206 GGAATTATCCTTCAAGCTCGTGTT 59.364 41.667 0.00 0.00 42.93 3.32
83 84 3.923273 AAAGGGTTTCTTCTTCCCCAT 57.077 42.857 0.00 0.00 41.95 4.00
119 120 5.103129 TGAGAATGGGGATAATGGTTGGATT 60.103 40.000 0.00 0.00 0.00 3.01
120 121 4.419875 TGAGAATGGGGATAATGGTTGGAT 59.580 41.667 0.00 0.00 0.00 3.41
122 123 4.147321 CTGAGAATGGGGATAATGGTTGG 58.853 47.826 0.00 0.00 0.00 3.77
128 129 1.352352 CGGGCTGAGAATGGGGATAAT 59.648 52.381 0.00 0.00 0.00 1.28
136 137 3.570638 CGCTGCGGGCTGAGAATG 61.571 66.667 15.40 0.00 39.13 2.67
192 193 3.133464 TAGTACCACCCGTCCGCG 61.133 66.667 0.00 0.00 37.95 6.46
202 203 0.040058 TCCCTTGAGCGGTAGTACCA 59.960 55.000 19.41 0.00 38.47 3.25
213 214 0.745468 GGTAGTACCGCTCCCTTGAG 59.255 60.000 2.90 0.00 41.84 3.02
214 215 0.333993 AGGTAGTACCGCTCCCTTGA 59.666 55.000 13.76 0.00 44.90 3.02
215 216 0.745468 GAGGTAGTACCGCTCCCTTG 59.255 60.000 15.22 0.00 44.90 3.61
216 217 0.630134 AGAGGTAGTACCGCTCCCTT 59.370 55.000 18.93 0.00 45.61 3.95
217 218 2.319622 AGAGGTAGTACCGCTCCCT 58.680 57.895 18.93 7.42 45.61 4.20
222 223 1.605710 TCGCATAAGAGGTAGTACCGC 59.394 52.381 14.74 14.74 44.90 5.68
223 224 2.350580 GCTCGCATAAGAGGTAGTACCG 60.351 54.545 13.76 0.00 44.90 4.02
224 225 2.350580 CGCTCGCATAAGAGGTAGTACC 60.351 54.545 11.73 11.73 38.63 3.34
225 226 2.350580 CCGCTCGCATAAGAGGTAGTAC 60.351 54.545 0.00 0.00 38.63 2.73
226 227 1.878088 CCGCTCGCATAAGAGGTAGTA 59.122 52.381 0.00 0.00 38.63 1.82
227 228 0.669077 CCGCTCGCATAAGAGGTAGT 59.331 55.000 0.00 0.00 38.63 2.73
228 229 0.039074 CCCGCTCGCATAAGAGGTAG 60.039 60.000 0.00 0.00 38.63 3.18
229 230 2.038690 CCCGCTCGCATAAGAGGTA 58.961 57.895 0.00 0.00 38.63 3.08
230 231 2.815308 CCCGCTCGCATAAGAGGT 59.185 61.111 0.00 0.00 38.63 3.85
231 232 2.663188 GCCCGCTCGCATAAGAGG 60.663 66.667 0.00 0.00 38.63 3.69
232 233 3.032609 CGCCCGCTCGCATAAGAG 61.033 66.667 0.00 0.00 41.03 2.85
233 234 4.585526 CCGCCCGCTCGCATAAGA 62.586 66.667 0.00 0.00 0.00 2.10
234 235 4.891727 ACCGCCCGCTCGCATAAG 62.892 66.667 0.00 0.00 0.00 1.73
240 241 4.812476 TTCATCACCGCCCGCTCG 62.812 66.667 0.00 0.00 0.00 5.03
241 242 1.376609 AATTTCATCACCGCCCGCTC 61.377 55.000 0.00 0.00 0.00 5.03
242 243 0.965363 AAATTTCATCACCGCCCGCT 60.965 50.000 0.00 0.00 0.00 5.52
243 244 0.108851 AAAATTTCATCACCGCCCGC 60.109 50.000 0.00 0.00 0.00 6.13
244 245 1.627879 CAAAATTTCATCACCGCCCG 58.372 50.000 0.00 0.00 0.00 6.13
245 246 1.337635 TGCAAAATTTCATCACCGCCC 60.338 47.619 0.00 0.00 0.00 6.13
246 247 2.077413 TGCAAAATTTCATCACCGCC 57.923 45.000 0.00 0.00 0.00 6.13
247 248 2.159801 GCTTGCAAAATTTCATCACCGC 60.160 45.455 0.00 0.00 0.00 5.68
248 249 3.319755 AGCTTGCAAAATTTCATCACCG 58.680 40.909 0.00 0.00 0.00 4.94
249 250 6.101332 TCATAGCTTGCAAAATTTCATCACC 58.899 36.000 0.00 0.00 0.00 4.02
250 251 7.585286 TTCATAGCTTGCAAAATTTCATCAC 57.415 32.000 0.00 0.00 0.00 3.06
251 252 8.497554 GTTTTCATAGCTTGCAAAATTTCATCA 58.502 29.630 0.00 0.00 0.00 3.07
252 253 8.497554 TGTTTTCATAGCTTGCAAAATTTCATC 58.502 29.630 0.00 0.00 0.00 2.92
253 254 8.380743 TGTTTTCATAGCTTGCAAAATTTCAT 57.619 26.923 0.00 0.00 0.00 2.57
254 255 7.783090 TGTTTTCATAGCTTGCAAAATTTCA 57.217 28.000 0.00 0.00 0.00 2.69
255 256 9.667989 AAATGTTTTCATAGCTTGCAAAATTTC 57.332 25.926 0.00 0.00 39.94 2.17
256 257 9.453325 CAAATGTTTTCATAGCTTGCAAAATTT 57.547 25.926 0.00 0.00 39.94 1.82
257 258 8.623030 ACAAATGTTTTCATAGCTTGCAAAATT 58.377 25.926 0.00 0.00 39.94 1.82
258 259 8.156994 ACAAATGTTTTCATAGCTTGCAAAAT 57.843 26.923 0.00 0.00 39.94 1.82
259 260 7.279536 TGACAAATGTTTTCATAGCTTGCAAAA 59.720 29.630 0.00 0.00 39.94 2.44
260 261 6.760298 TGACAAATGTTTTCATAGCTTGCAAA 59.240 30.769 0.00 0.00 39.94 3.68
261 262 6.279123 TGACAAATGTTTTCATAGCTTGCAA 58.721 32.000 0.00 0.00 39.94 4.08
262 263 5.840715 TGACAAATGTTTTCATAGCTTGCA 58.159 33.333 0.00 0.00 39.94 4.08
263 264 6.768029 TTGACAAATGTTTTCATAGCTTGC 57.232 33.333 0.00 0.00 39.94 4.01
264 265 8.356533 ACTTTGACAAATGTTTTCATAGCTTG 57.643 30.769 0.05 0.00 39.94 4.01
265 266 8.947055 AACTTTGACAAATGTTTTCATAGCTT 57.053 26.923 0.05 0.00 39.94 3.74
266 267 8.947055 AAACTTTGACAAATGTTTTCATAGCT 57.053 26.923 16.25 0.00 39.38 3.32
267 268 8.816144 TGAAACTTTGACAAATGTTTTCATAGC 58.184 29.630 19.95 12.08 41.29 2.97
301 302 3.951037 TGAGCTCAGGCAAACAGTAAAAA 59.049 39.130 13.74 0.00 41.70 1.94
302 303 3.550820 TGAGCTCAGGCAAACAGTAAAA 58.449 40.909 13.74 0.00 41.70 1.52
303 304 3.207265 TGAGCTCAGGCAAACAGTAAA 57.793 42.857 13.74 0.00 41.70 2.01
304 305 2.928801 TGAGCTCAGGCAAACAGTAA 57.071 45.000 13.74 0.00 41.70 2.24
305 306 4.162131 TCATATGAGCTCAGGCAAACAGTA 59.838 41.667 22.96 6.46 41.70 2.74
306 307 3.054875 TCATATGAGCTCAGGCAAACAGT 60.055 43.478 22.96 4.17 41.70 3.55
307 308 3.538591 TCATATGAGCTCAGGCAAACAG 58.461 45.455 22.96 6.02 41.70 3.16
308 309 3.538591 CTCATATGAGCTCAGGCAAACA 58.461 45.455 22.96 0.00 41.70 2.83
320 321 6.990798 TGTTCTAATCCTGAGCTCATATGAG 58.009 40.000 25.64 25.64 44.75 2.90
321 322 6.983906 TGTTCTAATCCTGAGCTCATATGA 57.016 37.500 18.63 14.43 0.00 2.15
322 323 6.426328 GGTTGTTCTAATCCTGAGCTCATATG 59.574 42.308 18.63 9.23 0.00 1.78
323 324 6.529220 GGTTGTTCTAATCCTGAGCTCATAT 58.471 40.000 18.63 11.28 0.00 1.78
324 325 5.451937 CGGTTGTTCTAATCCTGAGCTCATA 60.452 44.000 18.63 9.22 0.00 2.15
325 326 4.681781 CGGTTGTTCTAATCCTGAGCTCAT 60.682 45.833 18.63 4.63 0.00 2.90
326 327 3.368427 CGGTTGTTCTAATCCTGAGCTCA 60.368 47.826 17.19 17.19 0.00 4.26
327 328 3.190874 CGGTTGTTCTAATCCTGAGCTC 58.809 50.000 6.82 6.82 0.00 4.09
328 329 2.678190 GCGGTTGTTCTAATCCTGAGCT 60.678 50.000 0.00 0.00 0.00 4.09
329 330 1.666189 GCGGTTGTTCTAATCCTGAGC 59.334 52.381 0.00 0.00 0.00 4.26
330 331 1.927174 CGCGGTTGTTCTAATCCTGAG 59.073 52.381 0.00 0.00 0.00 3.35
331 332 1.274167 ACGCGGTTGTTCTAATCCTGA 59.726 47.619 12.47 0.00 0.00 3.86
332 333 1.722011 ACGCGGTTGTTCTAATCCTG 58.278 50.000 12.47 0.00 0.00 3.86
333 334 2.289195 TGAACGCGGTTGTTCTAATCCT 60.289 45.455 12.47 0.00 46.59 3.24
334 335 2.070783 TGAACGCGGTTGTTCTAATCC 58.929 47.619 12.47 0.00 46.59 3.01
335 336 2.991190 TCTGAACGCGGTTGTTCTAATC 59.009 45.455 12.47 0.00 46.59 1.75
336 337 3.034721 TCTGAACGCGGTTGTTCTAAT 57.965 42.857 12.47 0.00 46.59 1.73
337 338 2.512485 TCTGAACGCGGTTGTTCTAA 57.488 45.000 12.47 0.00 46.59 2.10
338 339 2.512485 TTCTGAACGCGGTTGTTCTA 57.488 45.000 12.47 0.00 46.59 2.10
339 340 1.878953 ATTCTGAACGCGGTTGTTCT 58.121 45.000 12.47 0.00 46.59 3.01
340 341 3.799137 TTATTCTGAACGCGGTTGTTC 57.201 42.857 12.47 5.55 46.63 3.18
341 342 4.759516 ATTTATTCTGAACGCGGTTGTT 57.240 36.364 12.47 0.00 34.02 2.83
342 343 4.759516 AATTTATTCTGAACGCGGTTGT 57.240 36.364 12.47 0.00 0.00 3.32
343 344 4.201485 GCAAATTTATTCTGAACGCGGTTG 60.201 41.667 12.47 0.48 0.00 3.77
344 345 3.917985 GCAAATTTATTCTGAACGCGGTT 59.082 39.130 12.47 1.69 0.00 4.44
345 346 3.190535 AGCAAATTTATTCTGAACGCGGT 59.809 39.130 12.47 1.91 0.00 5.68
346 347 3.758300 AGCAAATTTATTCTGAACGCGG 58.242 40.909 12.47 0.00 0.00 6.46
347 348 5.745653 AAAGCAAATTTATTCTGAACGCG 57.254 34.783 3.53 3.53 0.00 6.01
348 349 7.338440 AGAAAAGCAAATTTATTCTGAACGC 57.662 32.000 0.00 0.00 0.00 4.84
352 353 9.846248 GCTCTAAGAAAAGCAAATTTATTCTGA 57.154 29.630 7.88 2.30 38.42 3.27
353 354 9.852091 AGCTCTAAGAAAAGCAAATTTATTCTG 57.148 29.630 7.88 0.00 41.06 3.02
355 356 9.295214 GGAGCTCTAAGAAAAGCAAATTTATTC 57.705 33.333 14.64 0.00 41.06 1.75
356 357 7.970614 CGGAGCTCTAAGAAAAGCAAATTTATT 59.029 33.333 14.64 0.00 41.06 1.40
357 358 7.121315 ACGGAGCTCTAAGAAAAGCAAATTTAT 59.879 33.333 14.64 0.00 41.06 1.40
358 359 6.430000 ACGGAGCTCTAAGAAAAGCAAATTTA 59.570 34.615 14.64 0.00 41.06 1.40
359 360 5.241728 ACGGAGCTCTAAGAAAAGCAAATTT 59.758 36.000 14.64 0.00 41.06 1.82
360 361 4.762251 ACGGAGCTCTAAGAAAAGCAAATT 59.238 37.500 14.64 0.00 41.06 1.82
361 362 4.327680 ACGGAGCTCTAAGAAAAGCAAAT 58.672 39.130 14.64 0.00 41.06 2.32
362 363 3.740115 ACGGAGCTCTAAGAAAAGCAAA 58.260 40.909 14.64 0.00 41.06 3.68
363 364 3.402628 ACGGAGCTCTAAGAAAAGCAA 57.597 42.857 14.64 0.00 41.06 3.91
364 365 3.402628 AACGGAGCTCTAAGAAAAGCA 57.597 42.857 14.64 0.00 41.06 3.91
365 366 6.424176 AAATAACGGAGCTCTAAGAAAAGC 57.576 37.500 14.64 0.00 38.84 3.51
388 389 2.838202 ACGGAGCTCTCATCCCTAAAAA 59.162 45.455 14.64 0.00 32.86 1.94
389 390 2.467880 ACGGAGCTCTCATCCCTAAAA 58.532 47.619 14.64 0.00 32.86 1.52
390 391 2.160721 ACGGAGCTCTCATCCCTAAA 57.839 50.000 14.64 0.00 32.86 1.85
391 392 2.160721 AACGGAGCTCTCATCCCTAA 57.839 50.000 14.64 0.00 32.86 2.69
392 393 3.527507 ATAACGGAGCTCTCATCCCTA 57.472 47.619 14.64 0.00 32.86 3.53
393 394 2.390225 ATAACGGAGCTCTCATCCCT 57.610 50.000 14.64 0.00 32.86 4.20
394 395 3.134458 CAAATAACGGAGCTCTCATCCC 58.866 50.000 14.64 0.00 32.86 3.85
395 396 3.134458 CCAAATAACGGAGCTCTCATCC 58.866 50.000 14.64 0.00 0.00 3.51
396 397 2.545946 GCCAAATAACGGAGCTCTCATC 59.454 50.000 14.64 0.00 0.00 2.92
397 398 2.092968 TGCCAAATAACGGAGCTCTCAT 60.093 45.455 14.64 2.31 0.00 2.90
398 399 1.277842 TGCCAAATAACGGAGCTCTCA 59.722 47.619 14.64 0.00 0.00 3.27
399 400 2.024176 TGCCAAATAACGGAGCTCTC 57.976 50.000 14.64 2.76 0.00 3.20
400 401 2.359900 CTTGCCAAATAACGGAGCTCT 58.640 47.619 14.64 0.00 0.00 4.09
401 402 1.202188 GCTTGCCAAATAACGGAGCTC 60.202 52.381 4.71 4.71 0.00 4.09
402 403 0.811281 GCTTGCCAAATAACGGAGCT 59.189 50.000 0.00 0.00 0.00 4.09
403 404 0.525761 TGCTTGCCAAATAACGGAGC 59.474 50.000 0.00 0.00 0.00 4.70
404 405 3.508744 ATTGCTTGCCAAATAACGGAG 57.491 42.857 0.00 0.00 36.92 4.63
405 406 3.951775 AATTGCTTGCCAAATAACGGA 57.048 38.095 0.00 0.00 36.92 4.69
406 407 5.355467 AAAAATTGCTTGCCAAATAACGG 57.645 34.783 0.00 0.00 36.92 4.44
426 427 1.418264 GGGCTTGCCAACCCTTAAAAA 59.582 47.619 14.04 0.00 43.36 1.94
427 428 1.052617 GGGCTTGCCAACCCTTAAAA 58.947 50.000 14.04 0.00 43.36 1.52
428 429 1.182385 CGGGCTTGCCAACCCTTAAA 61.182 55.000 14.04 0.00 44.63 1.52
429 430 1.605165 CGGGCTTGCCAACCCTTAA 60.605 57.895 14.04 0.00 44.63 1.85
430 431 2.034999 CGGGCTTGCCAACCCTTA 59.965 61.111 14.04 0.00 44.63 2.69
431 432 2.937959 TTTCGGGCTTGCCAACCCTT 62.938 55.000 14.04 0.00 44.63 3.95
432 433 2.937959 TTTTCGGGCTTGCCAACCCT 62.938 55.000 14.04 0.00 44.63 4.34
433 434 1.826340 ATTTTCGGGCTTGCCAACCC 61.826 55.000 14.04 5.34 43.25 4.11
434 435 0.892063 TATTTTCGGGCTTGCCAACC 59.108 50.000 14.04 0.00 0.00 3.77
435 436 1.271102 TGTATTTTCGGGCTTGCCAAC 59.729 47.619 14.04 0.00 0.00 3.77
436 437 1.621992 TGTATTTTCGGGCTTGCCAA 58.378 45.000 14.04 0.00 0.00 4.52
437 438 1.621992 TTGTATTTTCGGGCTTGCCA 58.378 45.000 14.04 0.00 0.00 4.92
438 439 2.606108 CTTTGTATTTTCGGGCTTGCC 58.394 47.619 2.49 2.49 0.00 4.52
439 440 2.029380 ACCTTTGTATTTTCGGGCTTGC 60.029 45.455 0.00 0.00 0.00 4.01
440 441 3.254657 TCACCTTTGTATTTTCGGGCTTG 59.745 43.478 0.00 0.00 0.00 4.01
441 442 3.492337 TCACCTTTGTATTTTCGGGCTT 58.508 40.909 0.00 0.00 0.00 4.35
442 443 3.149005 TCACCTTTGTATTTTCGGGCT 57.851 42.857 0.00 0.00 0.00 5.19
443 444 3.004944 TGTTCACCTTTGTATTTTCGGGC 59.995 43.478 0.00 0.00 0.00 6.13
444 445 4.839668 TGTTCACCTTTGTATTTTCGGG 57.160 40.909 0.00 0.00 0.00 5.14
445 446 5.160641 CCATGTTCACCTTTGTATTTTCGG 58.839 41.667 0.00 0.00 0.00 4.30
446 447 5.768317 ACCATGTTCACCTTTGTATTTTCG 58.232 37.500 0.00 0.00 0.00 3.46
447 448 6.645003 GGAACCATGTTCACCTTTGTATTTTC 59.355 38.462 9.01 0.00 0.00 2.29
448 449 6.098982 TGGAACCATGTTCACCTTTGTATTTT 59.901 34.615 9.01 0.00 0.00 1.82
449 450 5.600484 TGGAACCATGTTCACCTTTGTATTT 59.400 36.000 9.01 0.00 0.00 1.40
450 451 5.010617 GTGGAACCATGTTCACCTTTGTATT 59.989 40.000 9.01 0.00 0.00 1.89
451 452 4.522789 GTGGAACCATGTTCACCTTTGTAT 59.477 41.667 9.01 0.00 0.00 2.29
452 453 3.886505 GTGGAACCATGTTCACCTTTGTA 59.113 43.478 9.01 0.00 0.00 2.41
453 454 2.693074 GTGGAACCATGTTCACCTTTGT 59.307 45.455 9.01 0.00 0.00 2.83
454 455 2.692557 TGTGGAACCATGTTCACCTTTG 59.307 45.455 9.01 0.00 34.36 2.77
455 456 2.693074 GTGTGGAACCATGTTCACCTTT 59.307 45.455 9.01 0.00 34.36 3.11
456 457 2.306847 GTGTGGAACCATGTTCACCTT 58.693 47.619 9.01 0.00 34.36 3.50
457 458 1.813862 CGTGTGGAACCATGTTCACCT 60.814 52.381 9.01 0.00 34.36 4.00
458 459 0.591170 CGTGTGGAACCATGTTCACC 59.409 55.000 9.01 0.00 34.36 4.02
459 460 0.040425 GCGTGTGGAACCATGTTCAC 60.040 55.000 9.01 0.00 34.36 3.18
460 461 0.464554 TGCGTGTGGAACCATGTTCA 60.465 50.000 9.01 0.00 34.36 3.18
461 462 0.040425 GTGCGTGTGGAACCATGTTC 60.040 55.000 0.00 0.00 34.36 3.18
462 463 1.452145 GGTGCGTGTGGAACCATGTT 61.452 55.000 0.00 0.00 34.36 2.71
463 464 1.896660 GGTGCGTGTGGAACCATGT 60.897 57.895 0.00 0.00 34.36 3.21
464 465 2.625823 GGGTGCGTGTGGAACCATG 61.626 63.158 0.00 0.00 44.10 3.66
465 466 2.282180 GGGTGCGTGTGGAACCAT 60.282 61.111 0.00 0.00 44.10 3.55
467 468 3.284449 GTGGGTGCGTGTGGAACC 61.284 66.667 0.00 0.00 45.11 3.62
468 469 3.645975 CGTGGGTGCGTGTGGAAC 61.646 66.667 0.00 0.00 37.35 3.62
469 470 4.164087 ACGTGGGTGCGTGTGGAA 62.164 61.111 0.00 0.00 43.99 3.53
475 476 0.889994 TACTATTCACGTGGGTGCGT 59.110 50.000 17.00 9.35 46.88 5.24
476 477 1.999048 TTACTATTCACGTGGGTGCG 58.001 50.000 17.00 3.60 44.03 5.34
477 478 4.393680 TGAATTTACTATTCACGTGGGTGC 59.606 41.667 17.00 1.35 44.03 5.01
478 479 6.489127 TTGAATTTACTATTCACGTGGGTG 57.511 37.500 17.00 6.47 45.78 4.61
479 480 7.513371 TTTTGAATTTACTATTCACGTGGGT 57.487 32.000 17.00 11.87 37.71 4.51
533 534 9.758651 GTGAACCAAGTTTGATACCTAAAATTT 57.241 29.630 0.00 0.00 0.00 1.82
534 535 8.364894 GGTGAACCAAGTTTGATACCTAAAATT 58.635 33.333 0.00 0.00 35.64 1.82
535 536 7.507616 TGGTGAACCAAGTTTGATACCTAAAAT 59.492 33.333 0.00 0.00 44.35 1.82
536 537 6.834451 TGGTGAACCAAGTTTGATACCTAAAA 59.166 34.615 0.00 0.00 44.35 1.52
537 538 6.366340 TGGTGAACCAAGTTTGATACCTAAA 58.634 36.000 0.00 0.00 44.35 1.85
538 539 5.942961 TGGTGAACCAAGTTTGATACCTAA 58.057 37.500 0.00 0.00 44.35 2.69
539 540 5.570205 TGGTGAACCAAGTTTGATACCTA 57.430 39.130 0.00 0.00 44.35 3.08
540 541 4.447138 TGGTGAACCAAGTTTGATACCT 57.553 40.909 0.00 0.00 44.35 3.08
552 553 9.476287 TTCACACTTGAGTAGAATGGTGAACCA 62.476 40.741 4.29 4.29 41.08 3.67
553 554 4.452455 CACACTTGAGTAGAATGGTGAACC 59.548 45.833 0.00 0.00 0.00 3.62
554 555 5.297547 TCACACTTGAGTAGAATGGTGAAC 58.702 41.667 0.00 0.00 31.75 3.18
555 556 5.545063 TCACACTTGAGTAGAATGGTGAA 57.455 39.130 0.00 0.00 31.75 3.18
556 557 5.070446 ACTTCACACTTGAGTAGAATGGTGA 59.930 40.000 0.00 0.00 31.71 4.02
557 558 5.300752 ACTTCACACTTGAGTAGAATGGTG 58.699 41.667 0.00 0.00 31.71 4.17
558 559 5.552870 ACTTCACACTTGAGTAGAATGGT 57.447 39.130 0.57 0.00 31.71 3.55
559 560 6.483307 TGAAACTTCACACTTGAGTAGAATGG 59.517 38.462 0.00 0.00 31.71 3.16
560 561 7.482654 TGAAACTTCACACTTGAGTAGAATG 57.517 36.000 0.00 0.00 31.71 2.67
561 562 7.933577 TCATGAAACTTCACACTTGAGTAGAAT 59.066 33.333 0.00 0.00 40.49 2.40
562 563 7.272244 TCATGAAACTTCACACTTGAGTAGAA 58.728 34.615 0.00 0.00 40.49 2.10
563 564 6.816136 TCATGAAACTTCACACTTGAGTAGA 58.184 36.000 0.00 0.00 40.49 2.59
564 565 7.482654 TTCATGAAACTTCACACTTGAGTAG 57.517 36.000 5.45 0.00 40.49 2.57
565 566 8.450578 AATTCATGAAACTTCACACTTGAGTA 57.549 30.769 13.09 0.00 40.49 2.59
566 567 6.949352 ATTCATGAAACTTCACACTTGAGT 57.051 33.333 13.09 0.00 40.49 3.41
567 568 8.562892 AGTAATTCATGAAACTTCACACTTGAG 58.437 33.333 13.09 0.00 40.49 3.02
568 569 8.344831 CAGTAATTCATGAAACTTCACACTTGA 58.655 33.333 13.09 0.00 40.49 3.02
569 570 8.344831 TCAGTAATTCATGAAACTTCACACTTG 58.655 33.333 13.09 0.00 40.49 3.16
570 571 8.345565 GTCAGTAATTCATGAAACTTCACACTT 58.654 33.333 13.09 1.37 40.49 3.16
571 572 7.498900 TGTCAGTAATTCATGAAACTTCACACT 59.501 33.333 13.09 1.50 40.49 3.55
572 573 7.639039 TGTCAGTAATTCATGAAACTTCACAC 58.361 34.615 13.09 6.80 40.49 3.82
573 574 7.800155 TGTCAGTAATTCATGAAACTTCACA 57.200 32.000 13.09 13.24 40.49 3.58
574 575 7.965107 GGATGTCAGTAATTCATGAAACTTCAC 59.035 37.037 13.09 11.09 40.49 3.18
575 576 7.148423 CGGATGTCAGTAATTCATGAAACTTCA 60.148 37.037 13.09 13.01 42.14 3.02
576 577 7.148407 ACGGATGTCAGTAATTCATGAAACTTC 60.148 37.037 13.09 11.60 0.00 3.01
577 578 6.655003 ACGGATGTCAGTAATTCATGAAACTT 59.345 34.615 13.09 5.88 0.00 2.66
578 579 6.092670 CACGGATGTCAGTAATTCATGAAACT 59.907 38.462 13.09 9.59 0.00 2.66
579 580 6.092122 TCACGGATGTCAGTAATTCATGAAAC 59.908 38.462 13.09 7.21 0.00 2.78
580 581 6.169800 TCACGGATGTCAGTAATTCATGAAA 58.830 36.000 13.09 0.00 0.00 2.69
581 582 5.729510 TCACGGATGTCAGTAATTCATGAA 58.270 37.500 11.26 11.26 0.00 2.57
582 583 5.337578 TCACGGATGTCAGTAATTCATGA 57.662 39.130 0.00 0.00 0.00 3.07
583 584 7.895975 ATATCACGGATGTCAGTAATTCATG 57.104 36.000 0.00 0.00 0.00 3.07
584 585 8.370940 AGAATATCACGGATGTCAGTAATTCAT 58.629 33.333 12.75 0.00 0.00 2.57
585 586 7.726216 AGAATATCACGGATGTCAGTAATTCA 58.274 34.615 12.75 0.00 0.00 2.57
586 587 7.867909 TGAGAATATCACGGATGTCAGTAATTC 59.132 37.037 0.00 0.00 31.12 2.17
587 588 7.726216 TGAGAATATCACGGATGTCAGTAATT 58.274 34.615 0.00 0.00 31.12 1.40
588 589 7.014711 ACTGAGAATATCACGGATGTCAGTAAT 59.985 37.037 3.00 0.00 33.22 1.89
589 590 6.321435 ACTGAGAATATCACGGATGTCAGTAA 59.679 38.462 3.00 0.00 33.22 2.24
590 591 5.828328 ACTGAGAATATCACGGATGTCAGTA 59.172 40.000 3.00 0.00 33.22 2.74
591 592 4.646945 ACTGAGAATATCACGGATGTCAGT 59.353 41.667 0.00 0.00 33.22 3.41
592 593 4.981054 CACTGAGAATATCACGGATGTCAG 59.019 45.833 0.00 0.00 33.22 3.51
593 594 4.644685 TCACTGAGAATATCACGGATGTCA 59.355 41.667 0.00 0.00 33.22 3.58
594 595 5.188327 TCACTGAGAATATCACGGATGTC 57.812 43.478 0.00 0.00 33.22 3.06
595 596 5.360999 TCTTCACTGAGAATATCACGGATGT 59.639 40.000 0.00 0.00 35.25 3.06
596 597 5.836347 TCTTCACTGAGAATATCACGGATG 58.164 41.667 0.00 0.00 35.25 3.51
597 598 6.471233 TTCTTCACTGAGAATATCACGGAT 57.529 37.500 0.00 0.00 35.25 4.18
598 599 5.914898 TTCTTCACTGAGAATATCACGGA 57.085 39.130 0.00 0.00 35.25 4.69
599 600 6.968131 TTTTCTTCACTGAGAATATCACGG 57.032 37.500 0.00 0.00 35.70 4.94
600 601 9.087424 TGTATTTTCTTCACTGAGAATATCACG 57.913 33.333 0.00 0.00 35.70 4.35
605 606 9.098355 CGGATTGTATTTTCTTCACTGAGAATA 57.902 33.333 0.00 0.00 35.70 1.75
606 607 7.066284 CCGGATTGTATTTTCTTCACTGAGAAT 59.934 37.037 0.00 0.00 35.70 2.40
607 608 6.371548 CCGGATTGTATTTTCTTCACTGAGAA 59.628 38.462 0.00 0.00 34.00 2.87
608 609 5.874810 CCGGATTGTATTTTCTTCACTGAGA 59.125 40.000 0.00 0.00 0.00 3.27
609 610 5.447818 GCCGGATTGTATTTTCTTCACTGAG 60.448 44.000 5.05 0.00 0.00 3.35
610 611 4.394920 GCCGGATTGTATTTTCTTCACTGA 59.605 41.667 5.05 0.00 0.00 3.41
611 612 4.438744 GGCCGGATTGTATTTTCTTCACTG 60.439 45.833 5.05 0.00 0.00 3.66
612 613 3.694566 GGCCGGATTGTATTTTCTTCACT 59.305 43.478 5.05 0.00 0.00 3.41
613 614 3.181490 GGGCCGGATTGTATTTTCTTCAC 60.181 47.826 5.05 0.00 0.00 3.18
614 615 3.020984 GGGCCGGATTGTATTTTCTTCA 58.979 45.455 5.05 0.00 0.00 3.02
615 616 3.288092 AGGGCCGGATTGTATTTTCTTC 58.712 45.455 5.05 0.00 0.00 2.87
616 617 3.382083 AGGGCCGGATTGTATTTTCTT 57.618 42.857 5.05 0.00 0.00 2.52
617 618 3.382083 AAGGGCCGGATTGTATTTTCT 57.618 42.857 5.05 0.00 0.00 2.52
618 619 4.204799 AGTAAGGGCCGGATTGTATTTTC 58.795 43.478 5.05 0.00 0.00 2.29
619 620 4.245251 AGTAAGGGCCGGATTGTATTTT 57.755 40.909 5.05 0.00 0.00 1.82
620 621 3.945640 AGTAAGGGCCGGATTGTATTT 57.054 42.857 5.05 0.00 0.00 1.40
621 622 5.072600 TGAATAGTAAGGGCCGGATTGTATT 59.927 40.000 5.05 4.87 0.00 1.89
622 623 4.595781 TGAATAGTAAGGGCCGGATTGTAT 59.404 41.667 5.05 0.00 0.00 2.29
623 624 3.968649 TGAATAGTAAGGGCCGGATTGTA 59.031 43.478 5.05 0.00 0.00 2.41
624 625 2.775384 TGAATAGTAAGGGCCGGATTGT 59.225 45.455 5.05 0.00 0.00 2.71
625 626 3.485463 TGAATAGTAAGGGCCGGATTG 57.515 47.619 5.05 0.00 0.00 2.67
626 627 3.650942 TGATGAATAGTAAGGGCCGGATT 59.349 43.478 5.05 0.00 0.00 3.01
627 628 3.248024 TGATGAATAGTAAGGGCCGGAT 58.752 45.455 5.05 0.00 0.00 4.18
628 629 2.684943 TGATGAATAGTAAGGGCCGGA 58.315 47.619 5.05 0.00 0.00 5.14
629 630 3.139077 GTTGATGAATAGTAAGGGCCGG 58.861 50.000 0.00 0.00 0.00 6.13
630 631 3.804036 TGTTGATGAATAGTAAGGGCCG 58.196 45.455 0.00 0.00 0.00 6.13
631 632 5.594317 ACATTGTTGATGAATAGTAAGGGCC 59.406 40.000 0.00 0.00 39.15 5.80
632 633 6.699575 ACATTGTTGATGAATAGTAAGGGC 57.300 37.500 0.00 0.00 39.15 5.19
633 634 9.927668 AAAAACATTGTTGATGAATAGTAAGGG 57.072 29.630 2.13 0.00 39.15 3.95
663 664 9.101655 GCATAAAAATGACAAAATGGAAGCTAT 57.898 29.630 0.00 0.00 0.00 2.97
664 665 8.093307 TGCATAAAAATGACAAAATGGAAGCTA 58.907 29.630 0.00 0.00 0.00 3.32
665 666 6.935771 TGCATAAAAATGACAAAATGGAAGCT 59.064 30.769 0.00 0.00 0.00 3.74
666 667 7.118101 TCTGCATAAAAATGACAAAATGGAAGC 59.882 33.333 0.00 0.00 0.00 3.86
667 668 8.537049 TCTGCATAAAAATGACAAAATGGAAG 57.463 30.769 0.00 0.00 0.00 3.46
668 669 8.899427 TTCTGCATAAAAATGACAAAATGGAA 57.101 26.923 0.00 0.00 0.00 3.53
669 670 8.937884 CATTCTGCATAAAAATGACAAAATGGA 58.062 29.630 0.00 0.00 33.22 3.41
670 671 8.723311 ACATTCTGCATAAAAATGACAAAATGG 58.277 29.630 14.47 0.00 35.03 3.16
671 672 9.749490 GACATTCTGCATAAAAATGACAAAATG 57.251 29.630 14.47 0.00 35.03 2.32
672 673 9.491675 TGACATTCTGCATAAAAATGACAAAAT 57.508 25.926 14.47 0.00 34.05 1.82
673 674 8.883954 TGACATTCTGCATAAAAATGACAAAA 57.116 26.923 14.47 0.00 34.05 2.44
674 675 8.883954 TTGACATTCTGCATAAAAATGACAAA 57.116 26.923 17.65 8.65 39.91 2.83
675 676 7.599621 CCTTGACATTCTGCATAAAAATGACAA 59.400 33.333 18.27 18.27 40.26 3.18
676 677 7.039853 TCCTTGACATTCTGCATAAAAATGACA 60.040 33.333 14.47 12.21 34.76 3.58
677 678 7.315142 TCCTTGACATTCTGCATAAAAATGAC 58.685 34.615 14.47 10.45 35.03 3.06
678 679 7.465353 TCCTTGACATTCTGCATAAAAATGA 57.535 32.000 14.47 0.00 35.03 2.57
679 680 7.762615 ACATCCTTGACATTCTGCATAAAAATG 59.237 33.333 8.75 8.75 36.64 2.32
680 681 7.844009 ACATCCTTGACATTCTGCATAAAAAT 58.156 30.769 0.00 0.00 0.00 1.82
681 682 7.039853 TGACATCCTTGACATTCTGCATAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
682 683 6.433716 TGACATCCTTGACATTCTGCATAAAA 59.566 34.615 0.00 0.00 0.00 1.52
683 684 5.945191 TGACATCCTTGACATTCTGCATAAA 59.055 36.000 0.00 0.00 0.00 1.40
684 685 5.499313 TGACATCCTTGACATTCTGCATAA 58.501 37.500 0.00 0.00 0.00 1.90
685 686 5.101648 TGACATCCTTGACATTCTGCATA 57.898 39.130 0.00 0.00 0.00 3.14
686 687 3.959293 TGACATCCTTGACATTCTGCAT 58.041 40.909 0.00 0.00 0.00 3.96
687 688 3.421919 TGACATCCTTGACATTCTGCA 57.578 42.857 0.00 0.00 0.00 4.41
688 689 4.978083 AATGACATCCTTGACATTCTGC 57.022 40.909 0.00 0.00 42.07 4.26
689 690 6.754702 AGAAATGACATCCTTGACATTCTG 57.245 37.500 4.61 0.00 43.98 3.02
690 691 6.093219 CGAAGAAATGACATCCTTGACATTCT 59.907 38.462 7.52 0.00 43.98 2.40
691 692 6.128172 ACGAAGAAATGACATCCTTGACATTC 60.128 38.462 7.52 0.00 43.98 2.67
692 693 5.707298 ACGAAGAAATGACATCCTTGACATT 59.293 36.000 7.52 0.00 45.76 2.71
693 694 5.122869 CACGAAGAAATGACATCCTTGACAT 59.877 40.000 7.52 0.00 39.42 3.06
694 695 4.452114 CACGAAGAAATGACATCCTTGACA 59.548 41.667 7.52 0.00 32.23 3.58
695 696 4.690748 TCACGAAGAAATGACATCCTTGAC 59.309 41.667 7.52 0.00 0.00 3.18
696 697 4.893608 TCACGAAGAAATGACATCCTTGA 58.106 39.130 7.52 0.00 0.00 3.02
697 698 5.611796 TTCACGAAGAAATGACATCCTTG 57.388 39.130 7.52 4.29 32.05 3.61
708 709 4.375606 CGCGTATGAAGTTTCACGAAGAAA 60.376 41.667 0.00 0.00 43.71 2.52
709 710 3.120616 CGCGTATGAAGTTTCACGAAGAA 59.879 43.478 0.00 0.00 40.49 2.52
710 711 2.659757 CGCGTATGAAGTTTCACGAAGA 59.340 45.455 0.00 0.00 40.49 2.87
711 712 2.659757 TCGCGTATGAAGTTTCACGAAG 59.340 45.455 5.77 3.23 40.49 3.79
712 713 2.663808 TCGCGTATGAAGTTTCACGAA 58.336 42.857 5.77 0.00 40.49 3.85
713 714 2.334971 TCGCGTATGAAGTTTCACGA 57.665 45.000 5.77 5.47 40.49 4.35
714 715 3.634730 ATTCGCGTATGAAGTTTCACG 57.365 42.857 5.77 0.00 40.49 4.35
715 716 6.578691 GGTATATTCGCGTATGAAGTTTCAC 58.421 40.000 5.77 0.00 40.49 3.18
716 717 5.400188 CGGTATATTCGCGTATGAAGTTTCA 59.600 40.000 5.77 0.00 42.14 2.69
717 718 5.164119 CCGGTATATTCGCGTATGAAGTTTC 60.164 44.000 5.77 0.00 0.00 2.78
718 719 4.682860 CCGGTATATTCGCGTATGAAGTTT 59.317 41.667 5.77 0.00 0.00 2.66
719 720 4.232221 CCGGTATATTCGCGTATGAAGTT 58.768 43.478 5.77 0.00 0.00 2.66
720 721 3.254166 ACCGGTATATTCGCGTATGAAGT 59.746 43.478 4.49 0.00 0.00 3.01
721 722 3.829948 ACCGGTATATTCGCGTATGAAG 58.170 45.455 4.49 0.00 0.00 3.02
722 723 3.667695 CGACCGGTATATTCGCGTATGAA 60.668 47.826 7.34 0.00 0.00 2.57
723 724 2.159667 CGACCGGTATATTCGCGTATGA 60.160 50.000 7.34 0.00 0.00 2.15
724 725 2.159667 TCGACCGGTATATTCGCGTATG 60.160 50.000 7.34 0.00 32.70 2.39
725 726 2.076100 TCGACCGGTATATTCGCGTAT 58.924 47.619 7.34 4.29 32.70 3.06
726 727 1.194547 GTCGACCGGTATATTCGCGTA 59.805 52.381 7.34 0.00 32.70 4.42
727 728 0.040958 GTCGACCGGTATATTCGCGT 60.041 55.000 7.34 0.00 32.70 6.01
728 729 0.236711 AGTCGACCGGTATATTCGCG 59.763 55.000 7.34 4.90 32.70 5.87
729 730 3.423571 CATAGTCGACCGGTATATTCGC 58.576 50.000 7.34 3.00 32.70 4.70
730 731 3.120095 TGCATAGTCGACCGGTATATTCG 60.120 47.826 7.34 6.70 0.00 3.34
731 732 4.430137 TGCATAGTCGACCGGTATATTC 57.570 45.455 7.34 0.00 0.00 1.75
732 733 6.320418 TGATATGCATAGTCGACCGGTATATT 59.680 38.462 7.34 0.00 0.00 1.28
733 734 5.826208 TGATATGCATAGTCGACCGGTATAT 59.174 40.000 7.34 15.27 0.00 0.86
734 735 5.065602 GTGATATGCATAGTCGACCGGTATA 59.934 44.000 7.34 11.32 0.00 1.47
735 736 4.014406 TGATATGCATAGTCGACCGGTAT 58.986 43.478 7.34 9.47 0.00 2.73
736 737 3.189910 GTGATATGCATAGTCGACCGGTA 59.810 47.826 7.34 1.71 0.00 4.02
737 738 2.030185 GTGATATGCATAGTCGACCGGT 60.030 50.000 6.92 6.92 0.00 5.28
738 739 2.030274 TGTGATATGCATAGTCGACCGG 60.030 50.000 13.01 0.00 0.00 5.28
739 740 3.282831 TGTGATATGCATAGTCGACCG 57.717 47.619 13.01 2.08 0.00 4.79
740 741 5.984233 TTTTGTGATATGCATAGTCGACC 57.016 39.130 13.01 0.00 0.00 4.79
795 796 9.747898 ACACACATCCCTTATCAATAGTAAAAA 57.252 29.630 0.00 0.00 0.00 1.94
796 797 9.173021 CACACACATCCCTTATCAATAGTAAAA 57.827 33.333 0.00 0.00 0.00 1.52
797 798 7.773224 CCACACACATCCCTTATCAATAGTAAA 59.227 37.037 0.00 0.00 0.00 2.01
798 799 7.126573 TCCACACACATCCCTTATCAATAGTAA 59.873 37.037 0.00 0.00 0.00 2.24
799 800 6.613679 TCCACACACATCCCTTATCAATAGTA 59.386 38.462 0.00 0.00 0.00 1.82
800 801 5.428457 TCCACACACATCCCTTATCAATAGT 59.572 40.000 0.00 0.00 0.00 2.12
801 802 5.928976 TCCACACACATCCCTTATCAATAG 58.071 41.667 0.00 0.00 0.00 1.73
802 803 5.966853 TCCACACACATCCCTTATCAATA 57.033 39.130 0.00 0.00 0.00 1.90
803 804 4.860802 TCCACACACATCCCTTATCAAT 57.139 40.909 0.00 0.00 0.00 2.57
804 805 4.331968 GTTCCACACACATCCCTTATCAA 58.668 43.478 0.00 0.00 0.00 2.57
805 806 3.308117 GGTTCCACACACATCCCTTATCA 60.308 47.826 0.00 0.00 0.00 2.15
806 807 3.279434 GGTTCCACACACATCCCTTATC 58.721 50.000 0.00 0.00 0.00 1.75
807 808 2.647299 TGGTTCCACACACATCCCTTAT 59.353 45.455 0.00 0.00 0.00 1.73
808 809 2.058705 TGGTTCCACACACATCCCTTA 58.941 47.619 0.00 0.00 0.00 2.69
809 810 0.850100 TGGTTCCACACACATCCCTT 59.150 50.000 0.00 0.00 0.00 3.95
810 811 1.075601 ATGGTTCCACACACATCCCT 58.924 50.000 0.00 0.00 0.00 4.20
811 812 2.799126 TATGGTTCCACACACATCCC 57.201 50.000 0.00 0.00 0.00 3.85
812 813 4.096382 GTGAATATGGTTCCACACACATCC 59.904 45.833 0.00 0.00 0.00 3.51
813 814 4.699735 TGTGAATATGGTTCCACACACATC 59.300 41.667 8.31 0.00 34.96 3.06
814 815 4.661222 TGTGAATATGGTTCCACACACAT 58.339 39.130 8.31 0.00 34.96 3.21
815 816 4.092116 TGTGAATATGGTTCCACACACA 57.908 40.909 8.31 11.17 34.96 3.72
816 817 5.446143 TTTGTGAATATGGTTCCACACAC 57.554 39.130 10.93 10.54 38.99 3.82
817 818 6.295011 GGATTTTGTGAATATGGTTCCACACA 60.295 38.462 8.31 8.31 38.99 3.72
818 819 6.099341 GGATTTTGTGAATATGGTTCCACAC 58.901 40.000 0.00 0.00 38.99 3.82
819 820 5.105957 CGGATTTTGTGAATATGGTTCCACA 60.106 40.000 0.00 0.00 37.70 4.17
820 821 5.105917 ACGGATTTTGTGAATATGGTTCCAC 60.106 40.000 0.00 0.00 0.00 4.02
821 822 5.013547 ACGGATTTTGTGAATATGGTTCCA 58.986 37.500 0.00 0.00 0.00 3.53
822 823 5.105917 ACACGGATTTTGTGAATATGGTTCC 60.106 40.000 0.00 0.00 39.73 3.62
823 824 5.949735 ACACGGATTTTGTGAATATGGTTC 58.050 37.500 0.00 0.00 39.73 3.62
824 825 5.105917 GGACACGGATTTTGTGAATATGGTT 60.106 40.000 0.00 0.00 39.73 3.67
825 826 4.398044 GGACACGGATTTTGTGAATATGGT 59.602 41.667 0.00 0.00 39.73 3.55
826 827 4.202010 GGGACACGGATTTTGTGAATATGG 60.202 45.833 0.00 0.00 39.73 2.74
827 828 4.640201 AGGGACACGGATTTTGTGAATATG 59.360 41.667 0.00 0.00 39.73 1.78
828 829 4.640201 CAGGGACACGGATTTTGTGAATAT 59.360 41.667 0.00 0.00 39.73 1.28
829 830 4.006989 CAGGGACACGGATTTTGTGAATA 58.993 43.478 0.00 0.00 39.73 1.75
830 831 2.819608 CAGGGACACGGATTTTGTGAAT 59.180 45.455 0.00 0.00 39.73 2.57
831 832 2.226330 CAGGGACACGGATTTTGTGAA 58.774 47.619 0.00 0.00 39.73 3.18
832 833 1.544537 CCAGGGACACGGATTTTGTGA 60.545 52.381 0.00 0.00 39.73 3.58
833 834 0.881118 CCAGGGACACGGATTTTGTG 59.119 55.000 0.00 0.00 42.99 3.33
834 835 0.893727 GCCAGGGACACGGATTTTGT 60.894 55.000 0.00 0.00 0.00 2.83
835 836 0.893270 TGCCAGGGACACGGATTTTG 60.893 55.000 0.00 0.00 0.00 2.44
836 837 0.178975 TTGCCAGGGACACGGATTTT 60.179 50.000 0.00 0.00 0.00 1.82
837 838 0.609131 CTTGCCAGGGACACGGATTT 60.609 55.000 0.00 0.00 0.00 2.17
838 839 1.002134 CTTGCCAGGGACACGGATT 60.002 57.895 0.00 0.00 0.00 3.01
839 840 2.671070 CTTGCCAGGGACACGGAT 59.329 61.111 0.00 0.00 0.00 4.18
840 841 4.329545 GCTTGCCAGGGACACGGA 62.330 66.667 0.00 0.00 0.00 4.69
842 843 3.925630 ATGGCTTGCCAGGGACACG 62.926 63.158 19.53 0.00 0.00 4.49
843 844 2.036256 ATGGCTTGCCAGGGACAC 59.964 61.111 19.53 0.00 0.00 3.67
844 845 2.036098 CATGGCTTGCCAGGGACA 59.964 61.111 19.53 0.00 0.00 4.02
845 846 2.210144 TACCATGGCTTGCCAGGGAC 62.210 60.000 40.38 4.97 43.43 4.46
846 847 1.505151 TTACCATGGCTTGCCAGGGA 61.505 55.000 40.38 25.21 43.43 4.20
847 848 0.397535 ATTACCATGGCTTGCCAGGG 60.398 55.000 34.76 34.76 45.80 4.45
848 849 1.488390 AATTACCATGGCTTGCCAGG 58.512 50.000 19.53 18.79 0.00 4.45
849 850 3.264104 CAAAATTACCATGGCTTGCCAG 58.736 45.455 19.53 9.61 0.00 4.85
850 851 2.614987 GCAAAATTACCATGGCTTGCCA 60.615 45.455 17.19 17.19 34.49 4.92
851 852 2.009051 GCAAAATTACCATGGCTTGCC 58.991 47.619 13.04 4.43 34.49 4.52
852 853 2.931969 GAGCAAAATTACCATGGCTTGC 59.068 45.455 13.04 17.78 39.50 4.01
853 854 3.181397 CGAGCAAAATTACCATGGCTTG 58.819 45.455 13.04 8.98 0.00 4.01
854 855 2.166254 CCGAGCAAAATTACCATGGCTT 59.834 45.455 13.04 0.00 0.00 4.35
855 856 1.750778 CCGAGCAAAATTACCATGGCT 59.249 47.619 13.04 0.00 0.00 4.75
856 857 1.748493 TCCGAGCAAAATTACCATGGC 59.252 47.619 13.04 0.00 0.00 4.40
857 858 2.223249 CGTCCGAGCAAAATTACCATGG 60.223 50.000 11.19 11.19 0.00 3.66
858 859 2.675844 TCGTCCGAGCAAAATTACCATG 59.324 45.455 0.00 0.00 0.00 3.66
859 860 2.980568 TCGTCCGAGCAAAATTACCAT 58.019 42.857 0.00 0.00 0.00 3.55
860 861 2.459060 TCGTCCGAGCAAAATTACCA 57.541 45.000 0.00 0.00 0.00 3.25
861 862 2.740447 AGTTCGTCCGAGCAAAATTACC 59.260 45.455 6.33 0.00 0.00 2.85
862 863 4.148891 CAAGTTCGTCCGAGCAAAATTAC 58.851 43.478 6.33 0.00 0.00 1.89
883 884 0.391528 TATGACGGTCGAGTCGGACA 60.392 55.000 13.54 3.84 43.70 4.02
884 885 0.027324 GTATGACGGTCGAGTCGGAC 59.973 60.000 13.54 9.41 43.70 4.79
885 886 0.107993 AGTATGACGGTCGAGTCGGA 60.108 55.000 13.54 0.00 43.70 4.55
887 888 1.004595 TGAGTATGACGGTCGAGTCG 58.995 55.000 6.09 6.09 43.70 4.18
888 889 1.268133 GCTGAGTATGACGGTCGAGTC 60.268 57.143 3.34 7.12 41.30 3.36
892 896 1.065928 GGGCTGAGTATGACGGTCG 59.934 63.158 3.34 0.00 0.00 4.79
962 1053 1.833934 GGGCTGGGGGCATGTTATG 60.834 63.158 0.00 0.00 44.01 1.90
963 1054 2.608759 GGGCTGGGGGCATGTTAT 59.391 61.111 0.00 0.00 44.01 1.89
1026 1125 3.063084 GAGAGGTGGTCGAGGCGT 61.063 66.667 0.00 0.00 0.00 5.68
1365 1464 3.200593 GCGTAGAGGGCGACGAGA 61.201 66.667 0.00 0.00 44.41 4.04
1602 1701 5.569355 TCTCTGGTAGGCATTTCATCAAAA 58.431 37.500 0.00 0.00 0.00 2.44
1623 1722 1.002274 AGACCAGGAGGCGGAATCT 59.998 57.895 0.00 0.00 39.06 2.40
1630 1729 0.326264 ATCAACACAGACCAGGAGGC 59.674 55.000 0.00 0.00 39.06 4.70
1632 1731 4.637534 CCAATAATCAACACAGACCAGGAG 59.362 45.833 0.00 0.00 0.00 3.69
1878 2211 0.111639 TTCCAACCCACCCAGCTAAC 59.888 55.000 0.00 0.00 0.00 2.34
1902 2235 4.705110 TTCAATCCTCTTCCTGTCAACA 57.295 40.909 0.00 0.00 0.00 3.33
2016 2349 1.414919 GTGTAAGGGTATGCATCCGGA 59.585 52.381 6.61 6.61 0.00 5.14
2120 2510 2.159226 ACGAAAGTGATCGGATCAGGTC 60.159 50.000 20.47 15.58 46.82 3.85
2145 2535 2.320587 GCTGCACGCAGTAAGCACT 61.321 57.895 19.56 0.00 45.28 4.40
2370 2760 1.792993 GCAATCTCAGCATTGTCGTGC 60.793 52.381 0.00 0.00 45.38 5.34
2529 2983 2.039084 ACTAGACCCTGGCTGTTTGAAG 59.961 50.000 0.00 0.00 0.00 3.02
2582 3036 4.630644 TTCAGCTCCTCAAAAGACATCT 57.369 40.909 0.00 0.00 0.00 2.90
2584 3038 4.022503 GCTTTTCAGCTCCTCAAAAGACAT 60.023 41.667 15.86 0.00 43.51 3.06
2686 3309 2.440409 AGCATCCCAACTTAGTTGCAG 58.560 47.619 18.72 12.26 41.62 4.41
2803 3426 9.169592 GCTTGTGGAGGTTACAAACTTATTATA 57.830 33.333 0.00 0.00 37.56 0.98
2819 3442 2.485814 GAGCTTAAACTGCTTGTGGAGG 59.514 50.000 0.00 0.00 41.30 4.30
2864 3498 9.563748 AGCAGGTACATTTTACTAGTTTTGTTA 57.436 29.630 0.00 0.00 0.00 2.41
2880 3514 1.073763 TGGAGTGCAAAGCAGGTACAT 59.926 47.619 0.00 0.00 40.08 2.29
2886 3520 4.978083 ATCTAAATGGAGTGCAAAGCAG 57.022 40.909 0.00 0.00 40.08 4.24
3060 3694 7.329471 TCTGATGTGTTCTAGAAACATCTTTCG 59.671 37.037 32.48 24.88 46.69 3.46
3204 3840 9.109393 GTGTCTCATAACTTCAAATATTAGCCA 57.891 33.333 0.00 0.00 0.00 4.75
3344 3983 6.825946 GGCATACCAAGCATGTTTTGCAAAT 61.826 40.000 13.65 0.00 44.87 2.32
3414 4053 9.937175 GGAGTTTATGCTGTAAATAGTCATTTC 57.063 33.333 0.00 0.00 35.88 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.