Multiple sequence alignment - TraesCS3B01G452700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G452700 chr3B 100.000 3257 0 0 1 3257 693738692 693735436 0.000000e+00 6015.0
1 TraesCS3B01G452700 chr3B 87.822 1281 110 20 1542 2814 693647479 693646237 0.000000e+00 1459.0
2 TraesCS3B01G452700 chr3B 85.123 894 88 27 1729 2598 693469881 693469009 0.000000e+00 872.0
3 TraesCS3B01G452700 chr3B 88.854 628 62 8 2111 2734 693601670 693601047 0.000000e+00 765.0
4 TraesCS3B01G452700 chr3B 88.436 614 29 22 852 1456 693649812 693649232 0.000000e+00 702.0
5 TraesCS3B01G452700 chr3B 95.148 371 16 1 170 540 818860437 818860805 4.680000e-163 584.0
6 TraesCS3B01G452700 chr3B 87.931 174 21 0 1197 1370 693602282 693602109 4.260000e-49 206.0
7 TraesCS3B01G452700 chr3B 80.755 265 35 10 1396 1653 693736999 693736744 3.320000e-45 193.0
8 TraesCS3B01G452700 chr3B 80.755 265 35 10 1694 1949 693737297 693737040 3.320000e-45 193.0
9 TraesCS3B01G452700 chr3B 83.465 127 14 5 1863 1984 693647453 693647329 9.550000e-21 111.0
10 TraesCS3B01G452700 chr3B 81.818 110 14 5 802 911 693603603 693603500 1.610000e-13 87.9
11 TraesCS3B01G452700 chr3B 92.453 53 3 1 117 168 818860276 818860328 1.250000e-09 75.0
12 TraesCS3B01G452700 chr3A 92.515 2044 129 9 1214 3255 659858586 659856565 0.000000e+00 2905.0
13 TraesCS3B01G452700 chr3A 83.610 964 111 27 1729 2663 659624271 659623326 0.000000e+00 861.0
14 TraesCS3B01G452700 chr3A 87.500 648 69 10 2094 2734 659803220 659802578 0.000000e+00 737.0
15 TraesCS3B01G452700 chr3A 91.667 372 28 2 166 536 178842724 178843093 2.240000e-141 512.0
16 TraesCS3B01G452700 chr3A 89.080 174 19 0 1197 1370 659803566 659803393 1.970000e-52 217.0
17 TraesCS3B01G452700 chr3A 84.091 220 29 3 1729 1948 659858376 659858163 1.180000e-49 207.0
18 TraesCS3B01G452700 chr3D 87.304 1276 105 16 1542 2814 525641918 525640697 0.000000e+00 1406.0
19 TraesCS3B01G452700 chr3D 92.308 754 31 18 718 1456 525642810 525642069 0.000000e+00 1046.0
20 TraesCS3B01G452700 chr3D 83.814 902 95 31 1729 2604 525538300 525537424 0.000000e+00 809.0
21 TraesCS3B01G452700 chr3D 86.427 641 71 12 2080 2708 525634694 525634058 0.000000e+00 688.0
22 TraesCS3B01G452700 chr3D 91.127 417 22 3 718 1120 525655607 525655192 4.750000e-153 551.0
23 TraesCS3B01G452700 chr3D 76.545 874 99 42 858 1689 525538862 525538053 6.590000e-102 381.0
24 TraesCS3B01G452700 chr3D 77.880 217 21 14 1440 1653 525641747 525641555 3.440000e-20 110.0
25 TraesCS3B01G452700 chr1B 94.681 376 19 1 166 541 46699107 46699481 1.680000e-162 582.0
26 TraesCS3B01G452700 chr1B 89.286 84 9 0 33 116 212727113 212727196 4.440000e-19 106.0
27 TraesCS3B01G452700 chr1B 89.157 83 6 3 34 114 547888823 547888904 2.070000e-17 100.0
28 TraesCS3B01G452700 chr7D 94.054 370 18 3 166 533 436461553 436461920 2.840000e-155 558.0
29 TraesCS3B01G452700 chr2D 86.234 385 36 10 166 542 498672859 498673234 5.060000e-108 401.0
30 TraesCS3B01G452700 chr6B 81.892 370 59 6 166 533 130910926 130911289 4.080000e-79 305.0
31 TraesCS3B01G452700 chr6B 89.412 85 9 0 33 117 281532775 281532691 1.240000e-19 108.0
32 TraesCS3B01G452700 chr6B 79.200 125 19 7 423 541 592422486 592422609 2.690000e-11 80.5
33 TraesCS3B01G452700 chr2B 81.867 375 49 14 166 536 621773551 621773910 6.830000e-77 298.0
34 TraesCS3B01G452700 chr2B 89.831 118 8 2 1 114 337775925 337776042 7.280000e-32 148.0
35 TraesCS3B01G452700 chr7B 78.730 315 53 9 166 478 616818603 616818905 7.130000e-47 198.0
36 TraesCS3B01G452700 chr7B 92.500 40 2 1 737 776 406938720 406938758 4.540000e-04 56.5
37 TraesCS3B01G452700 chr4B 88.000 100 11 1 23 121 375826317 375826218 2.050000e-22 117.0
38 TraesCS3B01G452700 chr4B 89.286 84 9 0 33 116 357818042 357817959 4.440000e-19 106.0
39 TraesCS3B01G452700 chr5A 89.157 83 8 1 33 114 219530128 219530046 5.750000e-18 102.0
40 TraesCS3B01G452700 chr5D 83.810 105 15 2 12 115 98766641 98766744 7.440000e-17 99.0
41 TraesCS3B01G452700 chr4A 81.513 119 20 2 423 540 656548625 656548508 2.670000e-16 97.1
42 TraesCS3B01G452700 chr1A 80.508 118 21 2 1 117 376887056 376887172 4.480000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G452700 chr3B 693735436 693738692 3256 True 2133.666667 6015 87.170000 1 3257 3 chr3B.!!$R4 3256
1 TraesCS3B01G452700 chr3B 693469009 693469881 872 True 872.000000 872 85.123000 1729 2598 1 chr3B.!!$R1 869
2 TraesCS3B01G452700 chr3B 693646237 693649812 3575 True 757.333333 1459 86.574333 852 2814 3 chr3B.!!$R3 1962
3 TraesCS3B01G452700 chr3B 693601047 693603603 2556 True 352.966667 765 86.201000 802 2734 3 chr3B.!!$R2 1932
4 TraesCS3B01G452700 chr3B 818860276 818860805 529 False 329.500000 584 93.800500 117 540 2 chr3B.!!$F1 423
5 TraesCS3B01G452700 chr3A 659856565 659858586 2021 True 1556.000000 2905 88.303000 1214 3255 2 chr3A.!!$R3 2041
6 TraesCS3B01G452700 chr3A 659623326 659624271 945 True 861.000000 861 83.610000 1729 2663 1 chr3A.!!$R1 934
7 TraesCS3B01G452700 chr3A 659802578 659803566 988 True 477.000000 737 88.290000 1197 2734 2 chr3A.!!$R2 1537
8 TraesCS3B01G452700 chr3D 525640697 525642810 2113 True 854.000000 1406 85.830667 718 2814 3 chr3D.!!$R4 2096
9 TraesCS3B01G452700 chr3D 525634058 525634694 636 True 688.000000 688 86.427000 2080 2708 1 chr3D.!!$R1 628
10 TraesCS3B01G452700 chr3D 525537424 525538862 1438 True 595.000000 809 80.179500 858 2604 2 chr3D.!!$R3 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 665 0.034476 TGATGCATCGCCCTCTGATC 59.966 55.0 21.34 0.0 0.00 2.92 F
630 739 0.178921 AGGTGCTCAACTCCTCCAGA 60.179 55.0 0.00 0.0 37.78 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 4784 0.036483 TGTAGCGATGGCAAAGCTCA 60.036 50.0 20.62 15.65 43.41 4.26 R
2265 5279 0.737367 CAGAAAGCGCATCGAGTGGA 60.737 55.0 11.47 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.258591 TCGAACGAGAGGCAGCAC 59.741 61.111 0.00 0.00 0.00 4.40
18 19 2.049156 CGAACGAGAGGCAGCACA 60.049 61.111 0.00 0.00 0.00 4.57
19 20 1.664649 CGAACGAGAGGCAGCACAA 60.665 57.895 0.00 0.00 0.00 3.33
20 21 1.862806 GAACGAGAGGCAGCACAAC 59.137 57.895 0.00 0.00 0.00 3.32
21 22 1.891060 GAACGAGAGGCAGCACAACG 61.891 60.000 0.00 0.00 0.00 4.10
22 23 2.049156 CGAGAGGCAGCACAACGA 60.049 61.111 0.00 0.00 0.00 3.85
23 24 1.664649 CGAGAGGCAGCACAACGAA 60.665 57.895 0.00 0.00 0.00 3.85
24 25 1.621301 CGAGAGGCAGCACAACGAAG 61.621 60.000 0.00 0.00 0.00 3.79
25 26 0.319900 GAGAGGCAGCACAACGAAGA 60.320 55.000 0.00 0.00 0.00 2.87
26 27 0.601311 AGAGGCAGCACAACGAAGAC 60.601 55.000 0.00 0.00 0.00 3.01
27 28 1.569479 GAGGCAGCACAACGAAGACC 61.569 60.000 0.00 0.00 0.00 3.85
28 29 2.551270 GCAGCACAACGAAGACCG 59.449 61.111 0.00 0.00 45.44 4.79
29 30 1.954146 GCAGCACAACGAAGACCGA 60.954 57.895 0.00 0.00 41.76 4.69
30 31 1.891060 GCAGCACAACGAAGACCGAG 61.891 60.000 0.00 0.00 41.76 4.63
31 32 1.664965 AGCACAACGAAGACCGAGC 60.665 57.895 0.00 0.00 41.76 5.03
32 33 1.664965 GCACAACGAAGACCGAGCT 60.665 57.895 0.00 0.00 41.76 4.09
33 34 1.891060 GCACAACGAAGACCGAGCTG 61.891 60.000 0.00 0.00 41.76 4.24
34 35 0.318699 CACAACGAAGACCGAGCTGA 60.319 55.000 0.00 0.00 41.76 4.26
35 36 0.318784 ACAACGAAGACCGAGCTGAC 60.319 55.000 0.00 0.00 41.76 3.51
36 37 0.039074 CAACGAAGACCGAGCTGACT 60.039 55.000 0.00 0.00 41.76 3.41
37 38 1.199327 CAACGAAGACCGAGCTGACTA 59.801 52.381 0.00 0.00 41.76 2.59
38 39 1.088306 ACGAAGACCGAGCTGACTAG 58.912 55.000 0.00 0.00 41.76 2.57
39 40 0.378962 CGAAGACCGAGCTGACTAGG 59.621 60.000 0.00 0.00 43.88 3.02
40 41 1.752683 GAAGACCGAGCTGACTAGGA 58.247 55.000 0.00 0.00 40.97 2.94
41 42 2.303175 GAAGACCGAGCTGACTAGGAT 58.697 52.381 0.00 0.00 40.97 3.24
42 43 1.975660 AGACCGAGCTGACTAGGATC 58.024 55.000 0.00 0.00 40.97 3.36
43 44 1.213182 AGACCGAGCTGACTAGGATCA 59.787 52.381 0.00 0.00 40.97 2.92
44 45 2.025155 GACCGAGCTGACTAGGATCAA 58.975 52.381 0.00 0.00 40.97 2.57
45 46 2.427453 GACCGAGCTGACTAGGATCAAA 59.573 50.000 0.00 0.00 40.97 2.69
46 47 2.166664 ACCGAGCTGACTAGGATCAAAC 59.833 50.000 0.00 0.00 40.97 2.93
47 48 2.455032 CGAGCTGACTAGGATCAAACG 58.545 52.381 0.00 0.00 0.00 3.60
48 49 2.796383 CGAGCTGACTAGGATCAAACGG 60.796 54.545 0.00 0.00 0.00 4.44
49 50 2.166664 GAGCTGACTAGGATCAAACGGT 59.833 50.000 0.00 0.00 0.00 4.83
50 51 2.166664 AGCTGACTAGGATCAAACGGTC 59.833 50.000 0.00 0.00 0.00 4.79
51 52 2.094182 GCTGACTAGGATCAAACGGTCA 60.094 50.000 0.00 1.07 33.56 4.02
52 53 3.616560 GCTGACTAGGATCAAACGGTCAA 60.617 47.826 0.00 0.00 34.11 3.18
53 54 4.177026 CTGACTAGGATCAAACGGTCAAG 58.823 47.826 0.00 0.00 34.11 3.02
54 55 3.830178 TGACTAGGATCAAACGGTCAAGA 59.170 43.478 0.00 0.00 31.99 3.02
55 56 4.282449 TGACTAGGATCAAACGGTCAAGAA 59.718 41.667 0.00 0.00 31.99 2.52
56 57 4.822026 ACTAGGATCAAACGGTCAAGAAG 58.178 43.478 0.00 0.00 0.00 2.85
57 58 3.059352 AGGATCAAACGGTCAAGAAGG 57.941 47.619 0.00 0.00 0.00 3.46
58 59 2.637872 AGGATCAAACGGTCAAGAAGGA 59.362 45.455 0.00 0.00 0.00 3.36
59 60 3.264450 AGGATCAAACGGTCAAGAAGGAT 59.736 43.478 0.00 0.00 0.00 3.24
60 61 3.375299 GGATCAAACGGTCAAGAAGGATG 59.625 47.826 0.00 0.00 0.00 3.51
61 62 2.151202 TCAAACGGTCAAGAAGGATGC 58.849 47.619 0.00 0.00 0.00 3.91
62 63 1.879380 CAAACGGTCAAGAAGGATGCA 59.121 47.619 0.00 0.00 0.00 3.96
63 64 2.270352 AACGGTCAAGAAGGATGCAA 57.730 45.000 0.00 0.00 0.00 4.08
64 65 2.270352 ACGGTCAAGAAGGATGCAAA 57.730 45.000 0.00 0.00 0.00 3.68
65 66 2.795329 ACGGTCAAGAAGGATGCAAAT 58.205 42.857 0.00 0.00 0.00 2.32
66 67 2.749621 ACGGTCAAGAAGGATGCAAATC 59.250 45.455 0.00 0.00 0.00 2.17
67 68 2.223112 CGGTCAAGAAGGATGCAAATCG 60.223 50.000 0.00 0.00 0.00 3.34
68 69 2.098117 GGTCAAGAAGGATGCAAATCGG 59.902 50.000 0.00 0.00 0.00 4.18
69 70 2.098117 GTCAAGAAGGATGCAAATCGGG 59.902 50.000 0.00 0.00 0.00 5.14
70 71 1.406539 CAAGAAGGATGCAAATCGGGG 59.593 52.381 0.00 0.00 0.00 5.73
71 72 0.106519 AGAAGGATGCAAATCGGGGG 60.107 55.000 0.00 0.00 0.00 5.40
72 73 0.106719 GAAGGATGCAAATCGGGGGA 60.107 55.000 0.00 0.00 0.00 4.81
73 74 0.106519 AAGGATGCAAATCGGGGGAG 60.107 55.000 0.00 0.00 0.00 4.30
74 75 2.196245 GGATGCAAATCGGGGGAGC 61.196 63.158 0.00 0.00 0.00 4.70
75 76 2.123726 ATGCAAATCGGGGGAGCC 60.124 61.111 0.00 0.00 0.00 4.70
76 77 2.631012 GATGCAAATCGGGGGAGCCT 62.631 60.000 0.00 0.00 0.00 4.58
77 78 2.043953 GCAAATCGGGGGAGCCTT 60.044 61.111 0.00 0.00 0.00 4.35
78 79 2.121538 GCAAATCGGGGGAGCCTTC 61.122 63.158 0.00 0.00 0.00 3.46
79 80 1.609783 CAAATCGGGGGAGCCTTCT 59.390 57.895 0.00 0.00 0.00 2.85
80 81 0.464554 CAAATCGGGGGAGCCTTCTC 60.465 60.000 0.00 0.00 38.62 2.87
88 89 4.434685 GAGCCTTCTCCATGCGAG 57.565 61.111 5.18 5.18 40.30 5.03
89 90 1.519719 GAGCCTTCTCCATGCGAGT 59.480 57.895 9.98 0.00 39.84 4.18
90 91 0.107945 GAGCCTTCTCCATGCGAGTT 60.108 55.000 9.98 0.00 39.84 3.01
91 92 0.392193 AGCCTTCTCCATGCGAGTTG 60.392 55.000 9.98 5.64 39.84 3.16
92 93 1.372087 GCCTTCTCCATGCGAGTTGG 61.372 60.000 9.98 12.52 39.84 3.77
93 94 1.372087 CCTTCTCCATGCGAGTTGGC 61.372 60.000 9.98 0.00 39.84 4.52
94 95 0.392193 CTTCTCCATGCGAGTTGGCT 60.392 55.000 9.98 0.00 39.84 4.75
95 96 0.901827 TTCTCCATGCGAGTTGGCTA 59.098 50.000 9.98 0.00 39.84 3.93
96 97 0.461548 TCTCCATGCGAGTTGGCTAG 59.538 55.000 9.98 0.00 39.84 3.42
97 98 1.153369 TCCATGCGAGTTGGCTAGC 60.153 57.895 6.04 6.04 42.55 3.42
98 99 2.182842 CCATGCGAGTTGGCTAGCC 61.183 63.158 27.71 27.71 41.72 3.93
99 100 1.153289 CATGCGAGTTGGCTAGCCT 60.153 57.895 33.07 14.87 41.72 4.58
100 101 1.144936 ATGCGAGTTGGCTAGCCTC 59.855 57.895 33.07 24.48 41.72 4.70
101 102 1.333636 ATGCGAGTTGGCTAGCCTCT 61.334 55.000 33.07 28.25 41.72 3.69
102 103 1.219393 GCGAGTTGGCTAGCCTCTT 59.781 57.895 33.07 18.43 37.38 2.85
103 104 0.391793 GCGAGTTGGCTAGCCTCTTT 60.392 55.000 33.07 16.64 37.38 2.52
104 105 1.134788 GCGAGTTGGCTAGCCTCTTTA 60.135 52.381 33.07 11.19 37.38 1.85
105 106 2.677037 GCGAGTTGGCTAGCCTCTTTAA 60.677 50.000 33.07 16.84 37.38 1.52
106 107 3.798202 CGAGTTGGCTAGCCTCTTTAAT 58.202 45.455 33.07 13.19 36.94 1.40
107 108 3.557595 CGAGTTGGCTAGCCTCTTTAATG 59.442 47.826 33.07 12.42 36.94 1.90
108 109 4.518249 GAGTTGGCTAGCCTCTTTAATGT 58.482 43.478 33.07 11.11 36.94 2.71
109 110 4.923415 AGTTGGCTAGCCTCTTTAATGTT 58.077 39.130 33.07 7.31 36.94 2.71
110 111 5.325239 AGTTGGCTAGCCTCTTTAATGTTT 58.675 37.500 33.07 5.93 36.94 2.83
111 112 6.481643 AGTTGGCTAGCCTCTTTAATGTTTA 58.518 36.000 33.07 6.39 36.94 2.01
112 113 6.946009 AGTTGGCTAGCCTCTTTAATGTTTAA 59.054 34.615 33.07 12.39 36.94 1.52
113 114 7.450323 AGTTGGCTAGCCTCTTTAATGTTTAAA 59.550 33.333 33.07 11.95 36.94 1.52
114 115 7.768807 TGGCTAGCCTCTTTAATGTTTAAAA 57.231 32.000 33.07 4.80 36.94 1.52
115 116 8.361169 TGGCTAGCCTCTTTAATGTTTAAAAT 57.639 30.769 33.07 0.00 36.94 1.82
164 166 7.332678 GGTTCATGAGCAATTCTTTAATTTGCT 59.667 33.333 11.93 8.95 39.74 3.91
168 170 7.760131 TGAGCAATTCTTTAATTTGCTATGC 57.240 32.000 9.15 0.00 38.46 3.14
234 343 6.752335 TTTTTCATCTGCTTCAATGTTTCG 57.248 33.333 0.00 0.00 0.00 3.46
243 352 6.037500 TCTGCTTCAATGTTTCGAGGAATATG 59.962 38.462 0.00 0.00 0.00 1.78
335 444 5.537300 TTAGGATCTCATTCAGCAGGTAC 57.463 43.478 0.00 0.00 0.00 3.34
359 468 8.205131 ACGTACAACACTCTTCATTTTTACTT 57.795 30.769 0.00 0.00 0.00 2.24
444 553 8.109843 TGTTTAACTTTTGTTGTAAGATTGCG 57.890 30.769 0.00 0.00 43.41 4.85
533 642 2.092323 GGCTAAATTTTCTGGCTCCGT 58.908 47.619 0.00 0.00 0.00 4.69
536 645 2.586648 AAATTTTCTGGCTCCGTCCT 57.413 45.000 0.00 0.00 0.00 3.85
540 649 0.984230 TTTCTGGCTCCGTCCTTGAT 59.016 50.000 0.00 0.00 0.00 2.57
541 650 0.250234 TTCTGGCTCCGTCCTTGATG 59.750 55.000 0.00 0.00 0.00 3.07
542 651 1.817099 CTGGCTCCGTCCTTGATGC 60.817 63.158 0.00 0.00 0.00 3.91
543 652 2.268920 GGCTCCGTCCTTGATGCA 59.731 61.111 0.00 0.00 0.00 3.96
544 653 1.153086 GGCTCCGTCCTTGATGCAT 60.153 57.895 0.00 0.00 0.00 3.96
545 654 1.162800 GGCTCCGTCCTTGATGCATC 61.163 60.000 20.14 20.14 0.00 3.91
546 655 1.493950 GCTCCGTCCTTGATGCATCG 61.494 60.000 21.34 9.09 0.00 3.84
547 656 1.493950 CTCCGTCCTTGATGCATCGC 61.494 60.000 21.34 8.26 0.00 4.58
548 657 2.537560 CCGTCCTTGATGCATCGCC 61.538 63.158 21.34 6.52 0.00 5.54
549 658 2.537560 CGTCCTTGATGCATCGCCC 61.538 63.158 21.34 6.86 0.00 6.13
550 659 1.153086 GTCCTTGATGCATCGCCCT 60.153 57.895 21.34 0.00 0.00 5.19
551 660 1.146930 TCCTTGATGCATCGCCCTC 59.853 57.895 21.34 0.00 0.00 4.30
552 661 1.147824 CCTTGATGCATCGCCCTCT 59.852 57.895 21.34 0.00 0.00 3.69
553 662 1.164662 CCTTGATGCATCGCCCTCTG 61.165 60.000 21.34 6.35 0.00 3.35
554 663 0.179065 CTTGATGCATCGCCCTCTGA 60.179 55.000 21.34 0.00 0.00 3.27
555 664 0.471191 TTGATGCATCGCCCTCTGAT 59.529 50.000 21.34 0.00 0.00 2.90
556 665 0.034476 TGATGCATCGCCCTCTGATC 59.966 55.000 21.34 0.00 0.00 2.92
557 666 0.673022 GATGCATCGCCCTCTGATCC 60.673 60.000 11.68 0.00 0.00 3.36
558 667 2.356793 GCATCGCCCTCTGATCCG 60.357 66.667 0.00 0.00 0.00 4.18
559 668 2.861101 GCATCGCCCTCTGATCCGA 61.861 63.158 0.00 0.00 0.00 4.55
560 669 1.742146 CATCGCCCTCTGATCCGAA 59.258 57.895 0.00 0.00 33.10 4.30
561 670 0.319383 CATCGCCCTCTGATCCGAAG 60.319 60.000 0.00 0.00 33.10 3.79
562 671 0.757188 ATCGCCCTCTGATCCGAAGT 60.757 55.000 0.00 0.00 33.10 3.01
563 672 1.066587 CGCCCTCTGATCCGAAGTC 59.933 63.158 0.00 0.00 0.00 3.01
564 673 1.443828 GCCCTCTGATCCGAAGTCC 59.556 63.158 0.00 0.00 0.00 3.85
565 674 1.330655 GCCCTCTGATCCGAAGTCCA 61.331 60.000 0.00 0.00 0.00 4.02
566 675 0.461961 CCCTCTGATCCGAAGTCCAC 59.538 60.000 0.00 0.00 0.00 4.02
567 676 1.186200 CCTCTGATCCGAAGTCCACA 58.814 55.000 0.00 0.00 0.00 4.17
568 677 1.550524 CCTCTGATCCGAAGTCCACAA 59.449 52.381 0.00 0.00 0.00 3.33
569 678 2.028112 CCTCTGATCCGAAGTCCACAAA 60.028 50.000 0.00 0.00 0.00 2.83
570 679 2.996621 CTCTGATCCGAAGTCCACAAAC 59.003 50.000 0.00 0.00 0.00 2.93
571 680 1.726791 CTGATCCGAAGTCCACAAACG 59.273 52.381 0.00 0.00 0.00 3.60
572 681 1.341852 TGATCCGAAGTCCACAAACGA 59.658 47.619 0.00 0.00 0.00 3.85
573 682 2.028476 TGATCCGAAGTCCACAAACGAT 60.028 45.455 0.00 0.00 0.00 3.73
574 683 3.193903 TGATCCGAAGTCCACAAACGATA 59.806 43.478 0.00 0.00 0.00 2.92
575 684 3.880047 TCCGAAGTCCACAAACGATAT 57.120 42.857 0.00 0.00 0.00 1.63
576 685 4.196626 TCCGAAGTCCACAAACGATATT 57.803 40.909 0.00 0.00 0.00 1.28
577 686 3.930229 TCCGAAGTCCACAAACGATATTG 59.070 43.478 0.00 0.00 36.37 1.90
578 687 3.485216 CCGAAGTCCACAAACGATATTGC 60.485 47.826 0.00 0.00 33.52 3.56
579 688 3.124466 CGAAGTCCACAAACGATATTGCA 59.876 43.478 0.00 0.00 33.52 4.08
580 689 4.201812 CGAAGTCCACAAACGATATTGCAT 60.202 41.667 0.00 0.00 33.52 3.96
581 690 4.621068 AGTCCACAAACGATATTGCATG 57.379 40.909 0.00 0.00 33.52 4.06
582 691 3.378112 AGTCCACAAACGATATTGCATGG 59.622 43.478 0.00 0.00 33.52 3.66
583 692 3.128589 GTCCACAAACGATATTGCATGGT 59.871 43.478 0.00 0.00 31.66 3.55
584 693 4.334203 GTCCACAAACGATATTGCATGGTA 59.666 41.667 0.00 0.00 31.66 3.25
585 694 4.944317 TCCACAAACGATATTGCATGGTAA 59.056 37.500 0.00 0.00 31.66 2.85
586 695 5.065859 TCCACAAACGATATTGCATGGTAAG 59.934 40.000 0.00 0.00 31.66 2.34
587 696 4.734854 CACAAACGATATTGCATGGTAAGC 59.265 41.667 0.00 0.00 33.52 3.09
588 697 4.202010 ACAAACGATATTGCATGGTAAGCC 60.202 41.667 0.00 0.00 33.52 4.35
589 698 6.609666 ACAAACGATATTGCATGGTAAGCCA 61.610 40.000 0.00 0.00 40.48 4.75
590 699 8.019448 ACAAACGATATTGCATGGTAAGCCAA 62.019 38.462 0.00 0.00 39.99 4.52
591 700 9.697618 ACAAACGATATTGCATGGTAAGCCAAG 62.698 40.741 0.00 0.00 39.99 3.61
601 710 4.953940 TGGTAAGCCAAGCAAAGATTTT 57.046 36.364 0.00 0.00 42.83 1.82
602 711 4.630111 TGGTAAGCCAAGCAAAGATTTTG 58.370 39.130 0.00 0.00 42.83 2.44
603 712 3.433274 GGTAAGCCAAGCAAAGATTTTGC 59.567 43.478 16.48 16.48 39.02 3.68
604 713 5.037366 GGTAAGCCAAGCAAAGATTTTGCA 61.037 41.667 23.58 3.51 40.17 4.08
605 714 6.482028 GGTAAGCCAAGCAAAGATTTTGCAA 61.482 40.000 23.58 0.00 40.17 4.08
606 715 8.418301 GGTAAGCCAAGCAAAGATTTTGCAAC 62.418 42.308 23.58 12.30 40.17 4.17
627 736 1.528129 CAAAGGTGCTCAACTCCTCC 58.472 55.000 0.00 0.00 41.51 4.30
628 737 1.140312 AAAGGTGCTCAACTCCTCCA 58.860 50.000 0.00 0.00 41.51 3.86
629 738 0.689623 AAGGTGCTCAACTCCTCCAG 59.310 55.000 0.00 0.00 41.51 3.86
630 739 0.178921 AGGTGCTCAACTCCTCCAGA 60.179 55.000 0.00 0.00 37.78 3.86
631 740 0.908198 GGTGCTCAACTCCTCCAGAT 59.092 55.000 0.00 0.00 0.00 2.90
632 741 2.111384 GGTGCTCAACTCCTCCAGATA 58.889 52.381 0.00 0.00 0.00 1.98
633 742 2.159028 GGTGCTCAACTCCTCCAGATAC 60.159 54.545 0.00 0.00 0.00 2.24
634 743 2.497675 GTGCTCAACTCCTCCAGATACA 59.502 50.000 0.00 0.00 0.00 2.29
635 744 2.762887 TGCTCAACTCCTCCAGATACAG 59.237 50.000 0.00 0.00 0.00 2.74
636 745 2.763448 GCTCAACTCCTCCAGATACAGT 59.237 50.000 0.00 0.00 0.00 3.55
637 746 3.181480 GCTCAACTCCTCCAGATACAGTC 60.181 52.174 0.00 0.00 0.00 3.51
638 747 4.277476 CTCAACTCCTCCAGATACAGTCT 58.723 47.826 0.00 0.00 37.80 3.24
650 759 5.627182 AGATACAGTCTGCCATTGAGAAT 57.373 39.130 0.00 0.00 35.31 2.40
651 760 5.609423 AGATACAGTCTGCCATTGAGAATC 58.391 41.667 0.00 0.00 35.31 2.52
652 761 3.996921 ACAGTCTGCCATTGAGAATCT 57.003 42.857 0.00 0.00 34.92 2.40
653 762 6.552725 AGATACAGTCTGCCATTGAGAATCTA 59.447 38.462 0.00 0.00 35.31 1.98
654 763 5.021033 ACAGTCTGCCATTGAGAATCTAG 57.979 43.478 0.00 0.00 34.92 2.43
655 764 4.469227 ACAGTCTGCCATTGAGAATCTAGT 59.531 41.667 0.00 0.00 34.92 2.57
656 765 5.046014 ACAGTCTGCCATTGAGAATCTAGTT 60.046 40.000 0.00 0.00 34.92 2.24
657 766 6.155221 ACAGTCTGCCATTGAGAATCTAGTTA 59.845 38.462 0.00 0.00 34.92 2.24
658 767 6.478344 CAGTCTGCCATTGAGAATCTAGTTAC 59.522 42.308 0.00 0.00 34.92 2.50
659 768 5.460419 GTCTGCCATTGAGAATCTAGTTACG 59.540 44.000 0.00 0.00 34.92 3.18
660 769 5.127194 TCTGCCATTGAGAATCTAGTTACGT 59.873 40.000 0.00 0.00 34.92 3.57
661 770 5.348986 TGCCATTGAGAATCTAGTTACGTC 58.651 41.667 0.00 0.00 34.92 4.34
662 771 4.745620 GCCATTGAGAATCTAGTTACGTCC 59.254 45.833 0.00 0.00 34.92 4.79
663 772 5.681437 GCCATTGAGAATCTAGTTACGTCCA 60.681 44.000 0.00 0.00 34.92 4.02
664 773 6.516718 CCATTGAGAATCTAGTTACGTCCAT 58.483 40.000 0.00 0.00 34.92 3.41
665 774 6.422100 CCATTGAGAATCTAGTTACGTCCATG 59.578 42.308 0.00 0.00 34.92 3.66
666 775 4.933330 TGAGAATCTAGTTACGTCCATGC 58.067 43.478 0.00 0.00 34.92 4.06
667 776 4.401202 TGAGAATCTAGTTACGTCCATGCA 59.599 41.667 0.00 0.00 34.92 3.96
668 777 5.069119 TGAGAATCTAGTTACGTCCATGCAT 59.931 40.000 0.00 0.00 34.92 3.96
669 778 6.264518 TGAGAATCTAGTTACGTCCATGCATA 59.735 38.462 0.00 0.00 34.92 3.14
670 779 6.448006 AGAATCTAGTTACGTCCATGCATAC 58.552 40.000 0.00 0.00 0.00 2.39
671 780 4.579454 TCTAGTTACGTCCATGCATACC 57.421 45.455 0.00 0.00 0.00 2.73
672 781 4.212716 TCTAGTTACGTCCATGCATACCT 58.787 43.478 0.00 0.00 0.00 3.08
673 782 3.179443 AGTTACGTCCATGCATACCTG 57.821 47.619 0.00 0.00 0.00 4.00
674 783 2.764010 AGTTACGTCCATGCATACCTGA 59.236 45.455 0.00 0.00 0.00 3.86
675 784 3.388024 AGTTACGTCCATGCATACCTGAT 59.612 43.478 0.00 0.00 0.00 2.90
676 785 2.245159 ACGTCCATGCATACCTGATG 57.755 50.000 0.00 2.30 38.73 3.07
677 786 1.762370 ACGTCCATGCATACCTGATGA 59.238 47.619 0.00 0.00 37.82 2.92
678 787 2.224137 ACGTCCATGCATACCTGATGAG 60.224 50.000 0.00 0.00 37.82 2.90
679 788 2.149578 GTCCATGCATACCTGATGAGC 58.850 52.381 0.00 0.00 37.82 4.26
680 789 2.052468 TCCATGCATACCTGATGAGCT 58.948 47.619 0.00 0.00 37.82 4.09
681 790 2.152016 CCATGCATACCTGATGAGCTG 58.848 52.381 0.00 0.00 37.82 4.24
682 791 2.152016 CATGCATACCTGATGAGCTGG 58.848 52.381 0.00 0.00 37.82 4.85
683 792 0.471191 TGCATACCTGATGAGCTGGG 59.529 55.000 0.00 0.00 39.75 4.45
684 793 0.250640 GCATACCTGATGAGCTGGGG 60.251 60.000 0.00 0.00 39.75 4.96
685 794 1.427809 CATACCTGATGAGCTGGGGA 58.572 55.000 0.00 0.00 39.75 4.81
686 795 1.983691 CATACCTGATGAGCTGGGGAT 59.016 52.381 0.00 0.00 39.75 3.85
687 796 3.176411 CATACCTGATGAGCTGGGGATA 58.824 50.000 0.00 0.00 39.75 2.59
688 797 1.428869 ACCTGATGAGCTGGGGATAC 58.571 55.000 0.00 0.00 39.75 2.24
708 817 8.738645 GGATACCACTGTTTCTCTAATCATTT 57.261 34.615 0.00 0.00 0.00 2.32
709 818 9.832445 GGATACCACTGTTTCTCTAATCATTTA 57.168 33.333 0.00 0.00 0.00 1.40
713 822 9.739276 ACCACTGTTTCTCTAATCATTTAATCA 57.261 29.630 0.00 0.00 0.00 2.57
714 823 9.994432 CCACTGTTTCTCTAATCATTTAATCAC 57.006 33.333 0.00 0.00 0.00 3.06
718 827 9.739276 TGTTTCTCTAATCATTTAATCACAGGT 57.261 29.630 0.00 0.00 0.00 4.00
721 830 8.737168 TCTCTAATCATTTAATCACAGGTTGG 57.263 34.615 0.00 0.00 0.00 3.77
722 831 8.328758 TCTCTAATCATTTAATCACAGGTTGGT 58.671 33.333 0.00 0.00 0.00 3.67
723 832 8.506168 TCTAATCATTTAATCACAGGTTGGTC 57.494 34.615 0.00 0.00 0.00 4.02
724 833 8.328758 TCTAATCATTTAATCACAGGTTGGTCT 58.671 33.333 0.00 0.00 0.00 3.85
725 834 6.764308 ATCATTTAATCACAGGTTGGTCTG 57.236 37.500 0.00 0.00 40.40 3.51
777 886 1.808512 CGCACGGGGCAATTATCTACA 60.809 52.381 1.92 0.00 45.17 2.74
787 896 6.127140 GGGGCAATTATCTACATACTCCGTAT 60.127 42.308 0.00 0.00 0.00 3.06
989 2137 3.998672 GGTCCTTCGGTCGGTGCA 61.999 66.667 0.00 0.00 0.00 4.57
1140 2315 1.153289 CCTGCCAGACGGGAAGATG 60.153 63.158 0.23 0.00 46.79 2.90
1145 2320 1.141881 CAGACGGGAAGATGGACGG 59.858 63.158 0.00 0.00 0.00 4.79
1321 2503 4.473520 AAGCGGGAGGCCATGACG 62.474 66.667 5.01 5.01 45.17 4.35
1422 2604 2.038033 ACAAAGTGGTGCGTATACTGGT 59.962 45.455 0.56 0.00 0.00 4.00
1423 2605 3.071479 CAAAGTGGTGCGTATACTGGTT 58.929 45.455 0.56 0.00 0.00 3.67
1424 2606 3.412237 AAGTGGTGCGTATACTGGTTT 57.588 42.857 0.56 0.00 0.00 3.27
1425 2607 2.695359 AGTGGTGCGTATACTGGTTTG 58.305 47.619 0.56 0.00 0.00 2.93
1426 2608 2.300723 AGTGGTGCGTATACTGGTTTGA 59.699 45.455 0.56 0.00 0.00 2.69
1427 2609 3.068560 GTGGTGCGTATACTGGTTTGAA 58.931 45.455 0.56 0.00 0.00 2.69
1487 4318 3.139584 TCTGAGACGATAGGGGTGGATTA 59.860 47.826 0.00 0.00 43.77 1.75
1535 4390 7.014230 GGCTTATCATCAATTGGGTAGCTTAAA 59.986 37.037 5.42 0.00 0.00 1.52
1536 4391 8.579863 GCTTATCATCAATTGGGTAGCTTAAAT 58.420 33.333 5.42 0.00 0.00 1.40
1622 4479 0.620556 TTCTTCCCTAAGCAGGCTGG 59.379 55.000 17.64 0.00 41.08 4.85
1632 4489 2.654877 CAGGCTGGGCTTTGCTTG 59.345 61.111 6.61 0.00 0.00 4.01
1689 4549 5.411669 GGGATTTGTACTGGGCTAATTATCG 59.588 44.000 0.00 0.00 0.00 2.92
1713 4573 1.269166 CAAGTACAGAGGCGCGTTAG 58.731 55.000 8.43 2.40 0.00 2.34
1845 4712 8.786898 TGGAAAGTTTAATCAAGAGTTCATCTG 58.213 33.333 0.00 0.00 38.67 2.90
1848 4715 7.020827 AGTTTAATCAAGAGTTCATCTGGGA 57.979 36.000 0.00 0.00 38.67 4.37
1851 4718 2.259917 TCAAGAGTTCATCTGGGAGCA 58.740 47.619 0.00 0.00 38.67 4.26
1915 4784 3.026694 ACTTTCTTTCTGCAAACAGGCT 58.973 40.909 0.00 0.00 44.59 4.58
1974 4845 8.500753 ACATAAAAGCGGTATTTCATACTCAA 57.499 30.769 0.00 0.00 36.04 3.02
2119 5118 3.991121 GTCTCTCTTGTGGTAAAGCTGTC 59.009 47.826 0.00 0.00 0.00 3.51
2174 5180 4.018050 AGTTAGCCATCCTTGGATCTTTGT 60.018 41.667 0.00 0.00 46.92 2.83
2175 5181 2.731572 AGCCATCCTTGGATCTTTGTG 58.268 47.619 0.00 0.00 46.92 3.33
2176 5182 2.309755 AGCCATCCTTGGATCTTTGTGA 59.690 45.455 0.00 0.00 46.92 3.58
2180 5187 4.337555 CCATCCTTGGATCTTTGTGATGAC 59.662 45.833 0.00 0.00 46.92 3.06
2255 5269 3.832490 CCCGTGTCTGATATCAGGGATTA 59.168 47.826 28.30 9.60 43.91 1.75
2265 5279 6.080682 TGATATCAGGGATTAGTCTGAGCTT 58.919 40.000 0.00 0.00 42.40 3.74
2529 5543 6.631016 TGTCACTAGCGAACTCTTGAATTAT 58.369 36.000 0.00 0.00 0.00 1.28
2615 5651 3.134442 TGTCAAATTTGGCAGGCTTCTTT 59.866 39.130 21.18 0.00 37.97 2.52
2660 5699 9.614792 CAGTATTTACCTCCACTTAATAGCTTT 57.385 33.333 0.00 0.00 0.00 3.51
2835 5878 3.942748 AGACCAAAGAAACAAACGCTACA 59.057 39.130 0.00 0.00 0.00 2.74
2842 5885 4.855531 AGAAACAAACGCTACAATTCCAC 58.144 39.130 0.00 0.00 0.00 4.02
2851 5894 3.310774 CGCTACAATTCCACAATCCAGAG 59.689 47.826 0.00 0.00 0.00 3.35
2859 5902 3.713003 TCCACAATCCAGAGAAGCTAGA 58.287 45.455 0.00 0.00 0.00 2.43
2869 5912 1.611491 GAGAAGCTAGAGTAGGCGCAT 59.389 52.381 10.83 3.98 0.00 4.73
2876 5919 0.464735 AGAGTAGGCGCATCTCTCGT 60.465 55.000 10.83 2.07 33.98 4.18
2889 5932 1.532316 TCTCGTTCCCCTTCCGTGT 60.532 57.895 0.00 0.00 0.00 4.49
2890 5933 1.374252 CTCGTTCCCCTTCCGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
2891 5934 3.047877 CGTTCCCCTTCCGTGTGC 61.048 66.667 0.00 0.00 0.00 4.57
2915 5958 4.680237 CCACTCCGGCTGCGACAA 62.680 66.667 0.00 0.00 0.00 3.18
2919 5962 3.958147 CTCCGGCTGCGACAACCAT 62.958 63.158 0.00 0.00 0.00 3.55
2921 5964 1.743623 CCGGCTGCGACAACCATAA 60.744 57.895 0.00 0.00 0.00 1.90
2978 6021 2.513897 GTCGCATCCTTTCCCCCG 60.514 66.667 0.00 0.00 0.00 5.73
2979 6022 2.685743 TCGCATCCTTTCCCCCGA 60.686 61.111 0.00 0.00 0.00 5.14
3002 6045 4.688419 CGCTGCCTTTGCACGGTG 62.688 66.667 3.15 3.15 44.23 4.94
3003 6046 3.595758 GCTGCCTTTGCACGGTGT 61.596 61.111 10.24 0.00 44.23 4.16
3054 6097 0.622136 TCTGCCCTGCATTCATCACT 59.378 50.000 0.00 0.00 38.13 3.41
3055 6098 0.738975 CTGCCCTGCATTCATCACTG 59.261 55.000 0.00 0.00 38.13 3.66
3060 6103 0.454600 CTGCATTCATCACTGGCCAC 59.545 55.000 0.00 0.00 0.00 5.01
3062 6105 1.026182 GCATTCATCACTGGCCACGA 61.026 55.000 0.00 0.82 0.00 4.35
3063 6106 1.452110 CATTCATCACTGGCCACGAA 58.548 50.000 0.00 0.00 0.00 3.85
3094 6137 4.933064 GATCCGGCCTCGACGCTG 62.933 72.222 8.12 8.12 39.00 5.18
3103 6146 1.655654 CTCGACGCTGCGTATCCTG 60.656 63.158 29.03 14.98 41.37 3.86
3128 6171 3.103911 GCGAGTCGTCCAACGTGG 61.104 66.667 15.08 0.00 43.14 4.94
3159 6202 2.325082 GCACGGCGGATCTGTTTGT 61.325 57.895 13.24 0.00 30.14 2.83
3161 6204 1.070786 ACGGCGGATCTGTTTGTGT 59.929 52.632 13.24 0.00 0.00 3.72
3173 6216 0.386731 GTTTGTGTCGCCCCATTTCG 60.387 55.000 0.00 0.00 0.00 3.46
3214 6257 3.075005 GTGGTCGCCCCTGCTCTA 61.075 66.667 0.00 0.00 34.43 2.43
3235 6278 2.030007 ACTGGTCAACATTGCCATTTCG 60.030 45.455 7.82 1.56 35.12 3.46
3241 6284 2.428171 CAACATTGCCATTTCGGGAGAT 59.572 45.455 0.00 0.00 35.90 2.75
3255 6298 0.321122 GGAGATGCCGATGGATGGAC 60.321 60.000 0.00 0.00 0.00 4.02
3256 6299 0.668706 GAGATGCCGATGGATGGACG 60.669 60.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.082629 TTGTGCTGCCTCTCGTTCGA 62.083 55.000 0.00 0.00 0.00 3.71
2 3 1.862806 GTTGTGCTGCCTCTCGTTC 59.137 57.895 0.00 0.00 0.00 3.95
3 4 1.956170 CGTTGTGCTGCCTCTCGTT 60.956 57.895 0.00 0.00 0.00 3.85
4 5 2.356313 CGTTGTGCTGCCTCTCGT 60.356 61.111 0.00 0.00 0.00 4.18
5 6 1.621301 CTTCGTTGTGCTGCCTCTCG 61.621 60.000 0.00 0.00 0.00 4.04
6 7 0.319900 TCTTCGTTGTGCTGCCTCTC 60.320 55.000 0.00 0.00 0.00 3.20
7 8 0.601311 GTCTTCGTTGTGCTGCCTCT 60.601 55.000 0.00 0.00 0.00 3.69
8 9 1.569479 GGTCTTCGTTGTGCTGCCTC 61.569 60.000 0.00 0.00 0.00 4.70
9 10 1.598130 GGTCTTCGTTGTGCTGCCT 60.598 57.895 0.00 0.00 0.00 4.75
11 12 1.891060 CTCGGTCTTCGTTGTGCTGC 61.891 60.000 0.00 0.00 40.32 5.25
12 13 1.891060 GCTCGGTCTTCGTTGTGCTG 61.891 60.000 0.00 0.00 40.32 4.41
13 14 1.664965 GCTCGGTCTTCGTTGTGCT 60.665 57.895 0.00 0.00 40.32 4.40
14 15 1.664965 AGCTCGGTCTTCGTTGTGC 60.665 57.895 0.00 0.00 40.32 4.57
15 16 0.318699 TCAGCTCGGTCTTCGTTGTG 60.319 55.000 0.00 0.00 40.32 3.33
16 17 0.318784 GTCAGCTCGGTCTTCGTTGT 60.319 55.000 0.00 0.00 40.32 3.32
17 18 0.039074 AGTCAGCTCGGTCTTCGTTG 60.039 55.000 0.00 0.00 40.32 4.10
18 19 1.469308 CTAGTCAGCTCGGTCTTCGTT 59.531 52.381 0.00 0.00 40.32 3.85
19 20 1.088306 CTAGTCAGCTCGGTCTTCGT 58.912 55.000 0.00 0.00 40.32 3.85
20 21 0.378962 CCTAGTCAGCTCGGTCTTCG 59.621 60.000 0.00 0.00 40.90 3.79
21 22 1.752683 TCCTAGTCAGCTCGGTCTTC 58.247 55.000 0.00 0.00 0.00 2.87
22 23 2.303175 GATCCTAGTCAGCTCGGTCTT 58.697 52.381 0.00 0.00 0.00 3.01
23 24 1.213182 TGATCCTAGTCAGCTCGGTCT 59.787 52.381 0.00 0.00 0.00 3.85
24 25 1.681538 TGATCCTAGTCAGCTCGGTC 58.318 55.000 0.00 0.00 0.00 4.79
25 26 2.145397 TTGATCCTAGTCAGCTCGGT 57.855 50.000 0.00 0.00 0.00 4.69
26 27 2.796383 CGTTTGATCCTAGTCAGCTCGG 60.796 54.545 0.00 0.00 0.00 4.63
27 28 2.455032 CGTTTGATCCTAGTCAGCTCG 58.545 52.381 0.00 0.00 0.00 5.03
28 29 2.166664 ACCGTTTGATCCTAGTCAGCTC 59.833 50.000 0.00 0.00 0.00 4.09
29 30 2.166664 GACCGTTTGATCCTAGTCAGCT 59.833 50.000 0.00 0.00 0.00 4.24
30 31 2.094182 TGACCGTTTGATCCTAGTCAGC 60.094 50.000 0.00 0.00 31.10 4.26
31 32 3.868757 TGACCGTTTGATCCTAGTCAG 57.131 47.619 0.00 0.00 31.10 3.51
32 33 3.830178 TCTTGACCGTTTGATCCTAGTCA 59.170 43.478 0.00 0.00 32.71 3.41
33 34 4.451629 TCTTGACCGTTTGATCCTAGTC 57.548 45.455 0.00 0.00 0.00 2.59
34 35 4.322801 CCTTCTTGACCGTTTGATCCTAGT 60.323 45.833 0.00 0.00 0.00 2.57
35 36 4.081642 TCCTTCTTGACCGTTTGATCCTAG 60.082 45.833 0.00 0.00 0.00 3.02
36 37 3.835978 TCCTTCTTGACCGTTTGATCCTA 59.164 43.478 0.00 0.00 0.00 2.94
37 38 2.637872 TCCTTCTTGACCGTTTGATCCT 59.362 45.455 0.00 0.00 0.00 3.24
38 39 3.053831 TCCTTCTTGACCGTTTGATCC 57.946 47.619 0.00 0.00 0.00 3.36
39 40 3.181506 GCATCCTTCTTGACCGTTTGATC 60.182 47.826 0.00 0.00 0.00 2.92
40 41 2.749621 GCATCCTTCTTGACCGTTTGAT 59.250 45.455 0.00 0.00 0.00 2.57
41 42 2.151202 GCATCCTTCTTGACCGTTTGA 58.849 47.619 0.00 0.00 0.00 2.69
42 43 1.879380 TGCATCCTTCTTGACCGTTTG 59.121 47.619 0.00 0.00 0.00 2.93
43 44 2.270352 TGCATCCTTCTTGACCGTTT 57.730 45.000 0.00 0.00 0.00 3.60
44 45 2.270352 TTGCATCCTTCTTGACCGTT 57.730 45.000 0.00 0.00 0.00 4.44
45 46 2.270352 TTTGCATCCTTCTTGACCGT 57.730 45.000 0.00 0.00 0.00 4.83
46 47 2.223112 CGATTTGCATCCTTCTTGACCG 60.223 50.000 0.00 0.00 0.00 4.79
47 48 2.098117 CCGATTTGCATCCTTCTTGACC 59.902 50.000 0.00 0.00 0.00 4.02
48 49 2.098117 CCCGATTTGCATCCTTCTTGAC 59.902 50.000 0.00 0.00 0.00 3.18
49 50 2.368439 CCCGATTTGCATCCTTCTTGA 58.632 47.619 0.00 0.00 0.00 3.02
50 51 1.406539 CCCCGATTTGCATCCTTCTTG 59.593 52.381 0.00 0.00 0.00 3.02
51 52 1.686115 CCCCCGATTTGCATCCTTCTT 60.686 52.381 0.00 0.00 0.00 2.52
52 53 0.106519 CCCCCGATTTGCATCCTTCT 60.107 55.000 0.00 0.00 0.00 2.85
53 54 0.106719 TCCCCCGATTTGCATCCTTC 60.107 55.000 0.00 0.00 0.00 3.46
54 55 0.106519 CTCCCCCGATTTGCATCCTT 60.107 55.000 0.00 0.00 0.00 3.36
55 56 1.533711 CTCCCCCGATTTGCATCCT 59.466 57.895 0.00 0.00 0.00 3.24
56 57 2.196245 GCTCCCCCGATTTGCATCC 61.196 63.158 0.00 0.00 0.00 3.51
57 58 2.196245 GGCTCCCCCGATTTGCATC 61.196 63.158 0.00 0.00 0.00 3.91
58 59 2.123726 GGCTCCCCCGATTTGCAT 60.124 61.111 0.00 0.00 0.00 3.96
59 60 2.837031 GAAGGCTCCCCCGATTTGCA 62.837 60.000 0.00 0.00 39.21 4.08
60 61 2.043953 AAGGCTCCCCCGATTTGC 60.044 61.111 0.00 0.00 39.21 3.68
61 62 0.464554 GAGAAGGCTCCCCCGATTTG 60.465 60.000 0.00 0.00 39.21 2.32
62 63 1.915983 GAGAAGGCTCCCCCGATTT 59.084 57.895 0.00 0.00 39.21 2.17
63 64 3.648694 GAGAAGGCTCCCCCGATT 58.351 61.111 0.00 0.00 39.21 3.34
71 72 0.107945 AACTCGCATGGAGAAGGCTC 60.108 55.000 15.51 0.00 46.23 4.70
72 73 0.392193 CAACTCGCATGGAGAAGGCT 60.392 55.000 15.51 0.00 46.23 4.58
73 74 1.372087 CCAACTCGCATGGAGAAGGC 61.372 60.000 15.51 0.00 46.23 4.35
74 75 1.372087 GCCAACTCGCATGGAGAAGG 61.372 60.000 15.51 15.40 46.23 3.46
75 76 0.392193 AGCCAACTCGCATGGAGAAG 60.392 55.000 15.51 8.55 46.23 2.85
76 77 0.901827 TAGCCAACTCGCATGGAGAA 59.098 50.000 15.51 0.00 46.23 2.87
77 78 0.461548 CTAGCCAACTCGCATGGAGA 59.538 55.000 15.51 0.00 46.23 3.71
79 80 1.153369 GCTAGCCAACTCGCATGGA 60.153 57.895 2.29 0.00 40.56 3.41
80 81 2.182842 GGCTAGCCAACTCGCATGG 61.183 63.158 29.33 0.00 36.34 3.66
81 82 1.153289 AGGCTAGCCAACTCGCATG 60.153 57.895 34.70 0.00 36.34 4.06
82 83 1.144936 GAGGCTAGCCAACTCGCAT 59.855 57.895 34.70 12.30 36.34 4.73
83 84 1.544825 AAGAGGCTAGCCAACTCGCA 61.545 55.000 34.70 0.00 36.34 5.10
84 85 0.391793 AAAGAGGCTAGCCAACTCGC 60.392 55.000 34.70 15.96 38.92 5.03
85 86 2.961526 TAAAGAGGCTAGCCAACTCG 57.038 50.000 34.70 0.00 38.92 4.18
86 87 4.518249 ACATTAAAGAGGCTAGCCAACTC 58.482 43.478 34.70 23.17 38.92 3.01
87 88 4.576330 ACATTAAAGAGGCTAGCCAACT 57.424 40.909 34.70 27.73 38.92 3.16
88 89 5.644977 AAACATTAAAGAGGCTAGCCAAC 57.355 39.130 34.70 26.07 38.92 3.77
89 90 7.768807 TTTAAACATTAAAGAGGCTAGCCAA 57.231 32.000 34.70 20.25 38.92 4.52
90 91 7.768807 TTTTAAACATTAAAGAGGCTAGCCA 57.231 32.000 34.70 14.28 38.92 4.75
91 92 9.302345 GAATTTTAAACATTAAAGAGGCTAGCC 57.698 33.333 27.19 27.19 0.00 3.93
92 93 9.855021 TGAATTTTAAACATTAAAGAGGCTAGC 57.145 29.630 6.04 6.04 0.00 3.42
95 96 8.870116 ACCTGAATTTTAAACATTAAAGAGGCT 58.130 29.630 0.00 0.00 0.00 4.58
106 107 9.771534 CCCATTTTCTTACCTGAATTTTAAACA 57.228 29.630 0.00 0.00 0.00 2.83
107 108 9.772973 ACCCATTTTCTTACCTGAATTTTAAAC 57.227 29.630 0.00 0.00 0.00 2.01
112 113 8.466798 CGATTACCCATTTTCTTACCTGAATTT 58.533 33.333 0.00 0.00 0.00 1.82
113 114 7.068226 CCGATTACCCATTTTCTTACCTGAATT 59.932 37.037 0.00 0.00 0.00 2.17
114 115 6.546034 CCGATTACCCATTTTCTTACCTGAAT 59.454 38.462 0.00 0.00 0.00 2.57
115 116 5.883673 CCGATTACCCATTTTCTTACCTGAA 59.116 40.000 0.00 0.00 0.00 3.02
126 127 3.632145 GCTCATGAACCGATTACCCATTT 59.368 43.478 0.00 0.00 0.00 2.32
135 137 6.757897 TTAAAGAATTGCTCATGAACCGAT 57.242 33.333 0.00 0.00 0.00 4.18
254 363 9.498176 GGTACAAAAATAACTTCAGGTCTTAGA 57.502 33.333 0.00 0.00 0.00 2.10
304 413 6.601217 GCTGAATGAGATCCTAAAACCTCTTT 59.399 38.462 0.00 0.00 0.00 2.52
305 414 6.118852 GCTGAATGAGATCCTAAAACCTCTT 58.881 40.000 0.00 0.00 0.00 2.85
306 415 5.190528 TGCTGAATGAGATCCTAAAACCTCT 59.809 40.000 0.00 0.00 0.00 3.69
507 616 3.198417 AGCCAGAAAATTTAGCCATTGGG 59.802 43.478 4.53 0.00 37.18 4.12
533 642 1.146930 GAGGGCGATGCATCAAGGA 59.853 57.895 25.70 0.00 0.00 3.36
536 645 0.471191 ATCAGAGGGCGATGCATCAA 59.529 50.000 25.70 1.64 0.00 2.57
540 649 2.824546 GGATCAGAGGGCGATGCA 59.175 61.111 0.00 0.00 32.01 3.96
541 650 2.356793 CGGATCAGAGGGCGATGC 60.357 66.667 0.00 0.00 0.00 3.91
542 651 0.319383 CTTCGGATCAGAGGGCGATG 60.319 60.000 0.00 0.00 0.00 3.84
543 652 0.757188 ACTTCGGATCAGAGGGCGAT 60.757 55.000 9.64 0.00 0.00 4.58
544 653 1.379977 ACTTCGGATCAGAGGGCGA 60.380 57.895 9.64 0.00 0.00 5.54
545 654 1.066587 GACTTCGGATCAGAGGGCG 59.933 63.158 9.64 0.00 0.00 6.13
546 655 1.330655 TGGACTTCGGATCAGAGGGC 61.331 60.000 9.64 6.11 0.00 5.19
547 656 0.461961 GTGGACTTCGGATCAGAGGG 59.538 60.000 9.64 3.68 0.00 4.30
548 657 1.186200 TGTGGACTTCGGATCAGAGG 58.814 55.000 3.44 3.44 0.00 3.69
549 658 2.996621 GTTTGTGGACTTCGGATCAGAG 59.003 50.000 0.00 0.00 0.00 3.35
550 659 2.609491 CGTTTGTGGACTTCGGATCAGA 60.609 50.000 0.00 0.00 0.00 3.27
551 660 1.726791 CGTTTGTGGACTTCGGATCAG 59.273 52.381 0.00 0.00 0.00 2.90
552 661 1.341852 TCGTTTGTGGACTTCGGATCA 59.658 47.619 0.00 0.00 0.00 2.92
553 662 2.074547 TCGTTTGTGGACTTCGGATC 57.925 50.000 0.00 0.00 0.00 3.36
554 663 2.762535 ATCGTTTGTGGACTTCGGAT 57.237 45.000 0.00 0.00 0.00 4.18
555 664 3.880047 ATATCGTTTGTGGACTTCGGA 57.120 42.857 0.00 0.00 0.00 4.55
556 665 3.485216 GCAATATCGTTTGTGGACTTCGG 60.485 47.826 0.00 0.00 0.00 4.30
557 666 3.124466 TGCAATATCGTTTGTGGACTTCG 59.876 43.478 0.00 0.00 0.00 3.79
558 667 4.678509 TGCAATATCGTTTGTGGACTTC 57.321 40.909 0.00 0.00 0.00 3.01
559 668 4.142403 CCATGCAATATCGTTTGTGGACTT 60.142 41.667 0.00 0.00 28.82 3.01
560 669 3.378112 CCATGCAATATCGTTTGTGGACT 59.622 43.478 0.00 0.00 28.82 3.85
561 670 3.128589 ACCATGCAATATCGTTTGTGGAC 59.871 43.478 2.80 0.00 30.92 4.02
562 671 3.351740 ACCATGCAATATCGTTTGTGGA 58.648 40.909 2.80 0.00 30.92 4.02
563 672 3.781079 ACCATGCAATATCGTTTGTGG 57.219 42.857 0.00 0.00 32.03 4.17
564 673 4.734854 GCTTACCATGCAATATCGTTTGTG 59.265 41.667 0.00 0.00 0.00 3.33
565 674 4.202010 GGCTTACCATGCAATATCGTTTGT 60.202 41.667 0.00 0.00 35.26 2.83
566 675 4.202000 TGGCTTACCATGCAATATCGTTTG 60.202 41.667 0.00 0.00 42.67 2.93
567 676 3.951037 TGGCTTACCATGCAATATCGTTT 59.049 39.130 0.00 0.00 42.67 3.60
568 677 3.550820 TGGCTTACCATGCAATATCGTT 58.449 40.909 0.00 0.00 42.67 3.85
569 678 3.207265 TGGCTTACCATGCAATATCGT 57.793 42.857 0.00 0.00 42.67 3.73
578 687 8.259863 GCAAAATCTTTGCTTGGCTTACCATG 62.260 42.308 15.16 0.00 40.74 3.66
579 688 6.313567 GCAAAATCTTTGCTTGGCTTACCAT 61.314 40.000 15.16 0.00 40.74 3.55
580 689 5.037366 GCAAAATCTTTGCTTGGCTTACCA 61.037 41.667 15.16 0.00 42.17 3.25
581 690 3.433274 GCAAAATCTTTGCTTGGCTTACC 59.567 43.478 15.16 0.00 41.87 2.85
582 691 4.057432 TGCAAAATCTTTGCTTGGCTTAC 58.943 39.130 21.09 0.00 45.13 2.34
583 692 4.333913 TGCAAAATCTTTGCTTGGCTTA 57.666 36.364 21.09 0.89 45.13 3.09
584 693 3.196939 TGCAAAATCTTTGCTTGGCTT 57.803 38.095 21.09 0.00 45.13 4.35
585 694 2.874086 GTTGCAAAATCTTTGCTTGGCT 59.126 40.909 21.09 0.00 45.13 4.75
586 695 2.348779 CGTTGCAAAATCTTTGCTTGGC 60.349 45.455 21.09 10.10 45.13 4.52
587 696 2.348779 GCGTTGCAAAATCTTTGCTTGG 60.349 45.455 21.09 12.54 45.13 3.61
588 697 2.284684 TGCGTTGCAAAATCTTTGCTTG 59.715 40.909 21.09 13.24 45.13 4.01
589 698 2.548875 TGCGTTGCAAAATCTTTGCTT 58.451 38.095 21.09 0.00 45.13 3.91
590 699 2.222007 TGCGTTGCAAAATCTTTGCT 57.778 40.000 21.09 0.00 45.13 3.91
608 717 1.202806 TGGAGGAGTTGAGCACCTTTG 60.203 52.381 0.00 0.00 38.32 2.77
609 718 1.072965 CTGGAGGAGTTGAGCACCTTT 59.927 52.381 0.00 0.00 38.32 3.11
610 719 0.689623 CTGGAGGAGTTGAGCACCTT 59.310 55.000 0.00 0.00 38.32 3.50
611 720 0.178921 TCTGGAGGAGTTGAGCACCT 60.179 55.000 0.00 0.00 40.99 4.00
612 721 0.908198 ATCTGGAGGAGTTGAGCACC 59.092 55.000 0.00 0.00 0.00 5.01
613 722 2.497675 TGTATCTGGAGGAGTTGAGCAC 59.502 50.000 0.00 0.00 0.00 4.40
614 723 2.762887 CTGTATCTGGAGGAGTTGAGCA 59.237 50.000 0.00 0.00 0.00 4.26
615 724 2.763448 ACTGTATCTGGAGGAGTTGAGC 59.237 50.000 0.00 0.00 0.00 4.26
616 725 4.277476 AGACTGTATCTGGAGGAGTTGAG 58.723 47.826 0.00 0.00 35.81 3.02
617 726 4.323569 AGACTGTATCTGGAGGAGTTGA 57.676 45.455 0.00 0.00 35.81 3.18
628 737 5.366186 AGATTCTCAATGGCAGACTGTATCT 59.634 40.000 3.99 0.00 38.66 1.98
629 738 5.609423 AGATTCTCAATGGCAGACTGTATC 58.391 41.667 3.99 0.00 0.00 2.24
630 739 5.627182 AGATTCTCAATGGCAGACTGTAT 57.373 39.130 3.99 0.00 0.00 2.29
631 740 5.658634 ACTAGATTCTCAATGGCAGACTGTA 59.341 40.000 3.99 0.00 0.00 2.74
632 741 3.996921 AGATTCTCAATGGCAGACTGT 57.003 42.857 3.99 0.00 0.00 3.55
633 742 5.021033 ACTAGATTCTCAATGGCAGACTG 57.979 43.478 0.00 0.00 0.00 3.51
634 743 5.690464 AACTAGATTCTCAATGGCAGACT 57.310 39.130 0.00 0.00 0.00 3.24
635 744 5.460419 CGTAACTAGATTCTCAATGGCAGAC 59.540 44.000 0.00 0.00 0.00 3.51
636 745 5.127194 ACGTAACTAGATTCTCAATGGCAGA 59.873 40.000 0.00 0.00 0.00 4.26
637 746 5.352284 ACGTAACTAGATTCTCAATGGCAG 58.648 41.667 0.00 0.00 0.00 4.85
638 747 5.339008 ACGTAACTAGATTCTCAATGGCA 57.661 39.130 0.00 0.00 0.00 4.92
639 748 4.745620 GGACGTAACTAGATTCTCAATGGC 59.254 45.833 0.00 0.00 0.00 4.40
640 749 5.902681 TGGACGTAACTAGATTCTCAATGG 58.097 41.667 0.00 0.00 0.00 3.16
641 750 6.074088 GCATGGACGTAACTAGATTCTCAATG 60.074 42.308 0.00 0.00 0.00 2.82
642 751 5.986135 GCATGGACGTAACTAGATTCTCAAT 59.014 40.000 0.00 0.00 0.00 2.57
643 752 5.105513 TGCATGGACGTAACTAGATTCTCAA 60.106 40.000 0.00 0.00 0.00 3.02
644 753 4.401202 TGCATGGACGTAACTAGATTCTCA 59.599 41.667 0.00 0.00 0.00 3.27
645 754 4.933330 TGCATGGACGTAACTAGATTCTC 58.067 43.478 0.00 0.00 0.00 2.87
646 755 5.537300 ATGCATGGACGTAACTAGATTCT 57.463 39.130 0.00 0.00 0.00 2.40
647 756 5.634020 GGTATGCATGGACGTAACTAGATTC 59.366 44.000 10.16 0.00 0.00 2.52
648 757 5.304614 AGGTATGCATGGACGTAACTAGATT 59.695 40.000 10.16 0.00 27.03 2.40
649 758 4.833380 AGGTATGCATGGACGTAACTAGAT 59.167 41.667 10.16 0.00 27.03 1.98
650 759 4.037565 CAGGTATGCATGGACGTAACTAGA 59.962 45.833 10.16 0.00 27.86 2.43
651 760 4.037565 TCAGGTATGCATGGACGTAACTAG 59.962 45.833 10.16 0.00 27.86 2.57
652 761 3.955551 TCAGGTATGCATGGACGTAACTA 59.044 43.478 10.16 0.00 27.86 2.24
653 762 2.764010 TCAGGTATGCATGGACGTAACT 59.236 45.455 10.16 0.00 28.82 2.24
654 763 3.173668 TCAGGTATGCATGGACGTAAC 57.826 47.619 10.16 0.00 0.00 2.50
655 764 3.386402 TCATCAGGTATGCATGGACGTAA 59.614 43.478 10.16 0.00 35.38 3.18
656 765 2.962421 TCATCAGGTATGCATGGACGTA 59.038 45.455 10.16 0.00 35.38 3.57
657 766 1.762370 TCATCAGGTATGCATGGACGT 59.238 47.619 10.16 0.00 35.38 4.34
658 767 2.410939 CTCATCAGGTATGCATGGACG 58.589 52.381 10.16 0.00 35.38 4.79
659 768 2.149578 GCTCATCAGGTATGCATGGAC 58.850 52.381 10.16 0.00 35.38 4.02
660 769 2.052468 AGCTCATCAGGTATGCATGGA 58.948 47.619 10.16 1.98 35.38 3.41
661 770 2.152016 CAGCTCATCAGGTATGCATGG 58.848 52.381 10.16 0.00 35.38 3.66
662 771 2.152016 CCAGCTCATCAGGTATGCATG 58.848 52.381 10.16 0.00 35.38 4.06
663 772 1.073444 CCCAGCTCATCAGGTATGCAT 59.927 52.381 3.79 3.79 35.38 3.96
664 773 0.471191 CCCAGCTCATCAGGTATGCA 59.529 55.000 0.00 0.00 35.38 3.96
665 774 0.250640 CCCCAGCTCATCAGGTATGC 60.251 60.000 0.00 0.00 35.38 3.14
666 775 1.427809 TCCCCAGCTCATCAGGTATG 58.572 55.000 0.00 0.00 36.88 2.39
667 776 2.429933 ATCCCCAGCTCATCAGGTAT 57.570 50.000 0.00 0.00 0.00 2.73
668 777 2.609747 GTATCCCCAGCTCATCAGGTA 58.390 52.381 0.00 0.00 0.00 3.08
669 778 1.428869 GTATCCCCAGCTCATCAGGT 58.571 55.000 0.00 0.00 0.00 4.00
670 779 0.689623 GGTATCCCCAGCTCATCAGG 59.310 60.000 0.00 0.00 0.00 3.86
671 780 1.071385 GTGGTATCCCCAGCTCATCAG 59.929 57.143 0.00 0.00 46.45 2.90
672 781 1.131638 GTGGTATCCCCAGCTCATCA 58.868 55.000 0.00 0.00 46.45 3.07
673 782 1.071385 CAGTGGTATCCCCAGCTCATC 59.929 57.143 0.00 0.00 46.45 2.92
674 783 1.135094 CAGTGGTATCCCCAGCTCAT 58.865 55.000 0.00 0.00 46.45 2.90
675 784 0.252696 ACAGTGGTATCCCCAGCTCA 60.253 55.000 0.00 0.00 46.45 4.26
676 785 0.912486 AACAGTGGTATCCCCAGCTC 59.088 55.000 0.00 0.00 46.45 4.09
677 786 1.282157 GAAACAGTGGTATCCCCAGCT 59.718 52.381 0.00 0.00 46.45 4.24
678 787 1.282157 AGAAACAGTGGTATCCCCAGC 59.718 52.381 0.00 0.00 46.45 4.85
679 788 2.840651 AGAGAAACAGTGGTATCCCCAG 59.159 50.000 0.00 0.00 46.45 4.45
680 789 2.915869 AGAGAAACAGTGGTATCCCCA 58.084 47.619 0.00 0.00 42.51 4.96
681 790 5.130477 TGATTAGAGAAACAGTGGTATCCCC 59.870 44.000 0.00 0.00 0.00 4.81
682 791 6.235231 TGATTAGAGAAACAGTGGTATCCC 57.765 41.667 0.00 0.00 0.00 3.85
683 792 8.738645 AAATGATTAGAGAAACAGTGGTATCC 57.261 34.615 0.00 0.00 0.00 2.59
687 796 9.739276 TGATTAAATGATTAGAGAAACAGTGGT 57.261 29.630 0.00 0.00 0.00 4.16
688 797 9.994432 GTGATTAAATGATTAGAGAAACAGTGG 57.006 33.333 0.00 0.00 0.00 4.00
692 801 9.739276 ACCTGTGATTAAATGATTAGAGAAACA 57.261 29.630 0.00 0.00 0.00 2.83
695 804 9.177608 CCAACCTGTGATTAAATGATTAGAGAA 57.822 33.333 0.00 0.00 0.00 2.87
696 805 8.328758 ACCAACCTGTGATTAAATGATTAGAGA 58.671 33.333 0.00 0.00 0.00 3.10
697 806 8.511604 ACCAACCTGTGATTAAATGATTAGAG 57.488 34.615 0.00 0.00 0.00 2.43
698 807 8.328758 AGACCAACCTGTGATTAAATGATTAGA 58.671 33.333 0.00 0.00 0.00 2.10
699 808 8.400947 CAGACCAACCTGTGATTAAATGATTAG 58.599 37.037 0.00 0.00 0.00 1.73
700 809 7.888021 ACAGACCAACCTGTGATTAAATGATTA 59.112 33.333 0.00 0.00 44.93 1.75
701 810 6.721208 ACAGACCAACCTGTGATTAAATGATT 59.279 34.615 0.00 0.00 44.93 2.57
702 811 6.248433 ACAGACCAACCTGTGATTAAATGAT 58.752 36.000 0.00 0.00 44.93 2.45
703 812 5.630121 ACAGACCAACCTGTGATTAAATGA 58.370 37.500 0.00 0.00 44.93 2.57
704 813 5.964958 ACAGACCAACCTGTGATTAAATG 57.035 39.130 0.00 0.00 44.93 2.32
752 861 0.889638 TAATTGCCCCGTGCGTTTCA 60.890 50.000 0.00 0.00 45.60 2.69
787 896 5.106078 GGCAAAGATGGGTTGTTTTCGTATA 60.106 40.000 0.00 0.00 0.00 1.47
800 909 3.204827 CGGCGAGGCAAAGATGGG 61.205 66.667 0.00 0.00 0.00 4.00
1152 2327 3.695606 GAGACCAGCTCCCGCACA 61.696 66.667 0.00 0.00 37.69 4.57
1422 2604 4.596643 ACCCAACCATCCATCAAATTCAAA 59.403 37.500 0.00 0.00 0.00 2.69
1423 2605 4.166539 ACCCAACCATCCATCAAATTCAA 58.833 39.130 0.00 0.00 0.00 2.69
1424 2606 3.788933 ACCCAACCATCCATCAAATTCA 58.211 40.909 0.00 0.00 0.00 2.57
1425 2607 5.930837 TTACCCAACCATCCATCAAATTC 57.069 39.130 0.00 0.00 0.00 2.17
1426 2608 6.443206 TGATTTACCCAACCATCCATCAAATT 59.557 34.615 0.00 0.00 0.00 1.82
1427 2609 5.963253 TGATTTACCCAACCATCCATCAAAT 59.037 36.000 0.00 0.00 0.00 2.32
1487 4318 6.069963 AGCCTATCAGACCAAGTTAACAGATT 60.070 38.462 8.61 0.00 0.00 2.40
1535 4390 8.448008 TGCCCCAAGATGAACTCTTATAATTAT 58.552 33.333 2.97 2.97 42.48 1.28
1536 4391 7.811282 TGCCCCAAGATGAACTCTTATAATTA 58.189 34.615 0.00 0.00 42.48 1.40
1537 4392 6.672593 TGCCCCAAGATGAACTCTTATAATT 58.327 36.000 0.00 0.00 42.48 1.40
1538 4393 6.126361 ACTGCCCCAAGATGAACTCTTATAAT 60.126 38.462 0.00 0.00 42.48 1.28
1539 4394 5.191722 ACTGCCCCAAGATGAACTCTTATAA 59.808 40.000 0.00 0.00 42.48 0.98
1540 4395 4.721776 ACTGCCCCAAGATGAACTCTTATA 59.278 41.667 0.00 0.00 42.48 0.98
1622 4479 0.457443 GGATGTAGCCAAGCAAAGCC 59.543 55.000 0.00 0.00 0.00 4.35
1689 4549 0.806492 GCGCCTCTGTACTTGTAGCC 60.806 60.000 0.00 0.00 0.00 3.93
1713 4573 4.209538 TCATCCATGATCCATCAAACCAC 58.790 43.478 0.00 0.00 40.69 4.16
1848 4715 3.289834 CAAAGGCAGTGCGGTGCT 61.290 61.111 9.45 0.00 43.45 4.40
1915 4784 0.036483 TGTAGCGATGGCAAAGCTCA 60.036 50.000 20.62 15.65 43.41 4.26
1974 4845 7.201767 GGCTGAAGCAACAATCAGATAATTAGT 60.202 37.037 4.43 0.00 44.64 2.24
2077 4951 7.560368 AGAGACAAAGCTTATACAATACAGCT 58.440 34.615 0.00 0.00 44.71 4.24
2119 5118 5.634896 AGCTTAAAATTCGCACAATGAGAG 58.365 37.500 0.00 0.00 0.00 3.20
2174 5180 4.566004 CTCCTAAAAACGAGGTGTCATCA 58.434 43.478 0.00 0.00 35.40 3.07
2175 5181 3.371285 GCTCCTAAAAACGAGGTGTCATC 59.629 47.826 0.00 0.00 35.40 2.92
2176 5182 3.008049 AGCTCCTAAAAACGAGGTGTCAT 59.992 43.478 0.00 0.00 35.59 3.06
2180 5187 3.056035 AGGTAGCTCCTAAAAACGAGGTG 60.056 47.826 0.00 0.00 46.10 4.00
2210 5221 2.359975 GGTTTGGCTCCACCTCCG 60.360 66.667 0.00 0.00 40.22 4.63
2255 5269 1.476085 CATCGAGTGGAAGCTCAGACT 59.524 52.381 0.00 0.00 35.33 3.24
2265 5279 0.737367 CAGAAAGCGCATCGAGTGGA 60.737 55.000 11.47 0.00 0.00 4.02
2419 5433 0.804989 CACATGACCTTTTCCGCCTC 59.195 55.000 0.00 0.00 0.00 4.70
2529 5543 6.389091 CAAAGAACAATACCTGCTTGCAATA 58.611 36.000 0.00 0.00 0.00 1.90
2660 5699 1.167155 TGCTTCGCGGCCAACTTAAA 61.167 50.000 6.13 0.00 0.00 1.52
2696 5737 5.591472 TGGCCTGATTTGATATCACTTCAAG 59.409 40.000 4.48 6.61 34.76 3.02
2767 5808 7.358770 AGAAGAGCACTATTAGACATGTCAT 57.641 36.000 27.02 15.20 0.00 3.06
2835 5878 4.313020 AGCTTCTCTGGATTGTGGAATT 57.687 40.909 0.00 0.00 0.00 2.17
2842 5885 4.261994 GCCTACTCTAGCTTCTCTGGATTG 60.262 50.000 0.00 0.00 31.55 2.67
2851 5894 1.611491 AGATGCGCCTACTCTAGCTTC 59.389 52.381 4.18 0.00 35.05 3.86
2859 5902 0.382515 GAACGAGAGATGCGCCTACT 59.617 55.000 4.18 0.50 0.00 2.57
2869 5912 1.076192 ACGGAAGGGGAACGAGAGA 59.924 57.895 0.00 0.00 0.00 3.10
2876 5919 4.323477 CGGCACACGGAAGGGGAA 62.323 66.667 0.00 0.00 40.46 3.97
2909 5952 0.028902 GCCGGATTTATGGTTGTCGC 59.971 55.000 5.05 0.00 0.00 5.19
2912 5955 2.452600 ATGGCCGGATTTATGGTTGT 57.547 45.000 5.05 0.00 0.00 3.32
2914 5957 3.831911 CCATAATGGCCGGATTTATGGTT 59.168 43.478 26.64 7.84 43.67 3.67
2915 5958 3.430453 CCATAATGGCCGGATTTATGGT 58.570 45.455 26.64 2.97 43.67 3.55
2957 6000 1.079405 GGGAAAGGATGCGACACGA 60.079 57.895 0.00 0.00 0.00 4.35
2978 6021 4.389576 CAAAGGCAGCGCACCGTC 62.390 66.667 11.47 0.00 0.00 4.79
3054 6097 4.243008 TTGCGTCCTTCGTGGCCA 62.243 61.111 0.00 0.00 42.13 5.36
3055 6098 3.423154 CTTGCGTCCTTCGTGGCC 61.423 66.667 0.00 0.00 42.13 5.36
3060 6103 0.108615 ATCTGACCTTGCGTCCTTCG 60.109 55.000 0.00 0.00 41.18 3.79
3062 6105 0.250513 GGATCTGACCTTGCGTCCTT 59.749 55.000 0.00 0.00 41.18 3.36
3063 6106 1.901085 GGATCTGACCTTGCGTCCT 59.099 57.895 0.00 0.00 41.18 3.85
3071 6114 2.835431 CGAGGCCGGATCTGACCT 60.835 66.667 9.50 9.50 34.43 3.85
3093 6136 4.529219 CCCGCTGCAGGATACGCA 62.529 66.667 17.12 0.00 46.39 5.24
3113 6156 2.048503 CCCCACGTTGGACGACTC 60.049 66.667 7.36 0.00 46.05 3.36
3145 6188 1.787847 CGACACAAACAGATCCGCC 59.212 57.895 0.00 0.00 0.00 6.13
3213 6256 3.190327 CGAAATGGCAATGTTGACCAGTA 59.810 43.478 12.19 0.00 37.62 2.74
3214 6257 2.030007 CGAAATGGCAATGTTGACCAGT 60.030 45.455 12.19 8.40 37.62 4.00
3235 6278 1.002868 CCATCCATCGGCATCTCCC 60.003 63.158 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.