Multiple sequence alignment - TraesCS3B01G452200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G452200 chr3B 100.000 6761 0 0 1 6761 693343761 693337001 0.000000e+00 12486.0
1 TraesCS3B01G452200 chr3B 93.939 99 3 2 3961 4059 59025822 59025917 5.460000e-31 147.0
2 TraesCS3B01G452200 chr3D 94.331 3634 121 28 1 3572 525474976 525471366 0.000000e+00 5491.0
3 TraesCS3B01G452200 chr3D 91.332 773 41 14 4822 5584 525470137 525469381 0.000000e+00 1033.0
4 TraesCS3B01G452200 chr3D 90.098 717 44 12 4104 4799 525470954 525470244 0.000000e+00 905.0
5 TraesCS3B01G452200 chr3D 89.700 233 9 6 3751 3975 525471380 525471155 3.990000e-72 283.0
6 TraesCS3B01G452200 chr3D 85.635 181 16 5 6018 6188 525468537 525468357 1.500000e-41 182.0
7 TraesCS3B01G452200 chr3D 94.048 84 3 2 6580 6663 525468367 525468286 7.120000e-25 126.0
8 TraesCS3B01G452200 chr3D 91.011 89 7 1 5894 5981 8141870 8141782 1.190000e-22 119.0
9 TraesCS3B01G452200 chr3D 90.805 87 7 1 5901 5987 583171053 583170968 1.540000e-21 115.0
10 TraesCS3B01G452200 chr3D 100.000 38 0 0 2644 2681 525472213 525472176 3.380000e-08 71.3
11 TraesCS3B01G452200 chr3A 94.823 3071 106 17 1 3033 659557514 659554459 0.000000e+00 4741.0
12 TraesCS3B01G452200 chr3A 86.566 1258 87 28 4664 5893 659552878 659551675 0.000000e+00 1312.0
13 TraesCS3B01G452200 chr3A 95.191 603 16 10 2980 3572 659554479 659553880 0.000000e+00 941.0
14 TraesCS3B01G452200 chr3A 89.839 620 37 12 4060 4664 659553630 659553022 0.000000e+00 773.0
15 TraesCS3B01G452200 chr3A 98.370 184 3 0 3567 3750 45126069 45126252 2.350000e-84 324.0
16 TraesCS3B01G452200 chr3A 91.608 143 3 3 3751 3888 659553894 659553756 8.950000e-44 189.0
17 TraesCS3B01G452200 chr3A 79.670 182 17 8 6580 6761 659551540 659551379 5.540000e-21 113.0
18 TraesCS3B01G452200 chr7D 89.877 405 21 14 6192 6579 48707158 48707559 2.810000e-138 503.0
19 TraesCS3B01G452200 chr7D 89.356 404 24 13 6192 6579 48751063 48751463 2.190000e-134 490.0
20 TraesCS3B01G452200 chr7D 88.943 407 23 14 6192 6579 48625148 48625551 3.670000e-132 483.0
21 TraesCS3B01G452200 chr7D 88.354 395 30 8 6200 6580 596257725 596257333 1.720000e-125 460.0
22 TraesCS3B01G452200 chr7D 97.826 184 4 0 3567 3750 38077600 38077783 1.090000e-82 318.0
23 TraesCS3B01G452200 chr7D 95.745 94 3 1 3974 4067 483929694 483929602 4.220000e-32 150.0
24 TraesCS3B01G452200 chr7D 91.743 109 5 4 3967 4075 4013608 4013504 1.520000e-31 148.0
25 TraesCS3B01G452200 chr7D 91.011 89 7 1 5898 5985 350100478 350100566 1.190000e-22 119.0
26 TraesCS3B01G452200 chr1A 90.601 383 22 10 6213 6581 161668236 161668618 4.710000e-136 496.0
27 TraesCS3B01G452200 chr2A 90.052 382 28 7 6213 6584 732561179 732561560 2.830000e-133 486.0
28 TraesCS3B01G452200 chr2A 95.187 187 7 1 3567 3753 756216938 756217122 1.840000e-75 294.0
29 TraesCS3B01G452200 chr5D 89.764 381 26 9 6213 6580 362192553 362192933 6.140000e-130 475.0
30 TraesCS3B01G452200 chr4D 88.424 406 28 11 6190 6580 56312657 56313058 7.940000e-129 472.0
31 TraesCS3B01G452200 chr4D 88.442 398 31 8 6199 6581 56313877 56314274 3.690000e-127 466.0
32 TraesCS3B01G452200 chr4D 100.000 173 0 0 3567 3739 356561274 356561446 3.040000e-83 320.0
33 TraesCS3B01G452200 chr4D 93.229 192 7 2 3559 3750 102529874 102530059 1.860000e-70 278.0
34 TraesCS3B01G452200 chr1B 98.370 184 3 0 3567 3750 141109861 141109678 2.350000e-84 324.0
35 TraesCS3B01G452200 chr4B 96.739 184 5 1 3567 3750 642775434 642775252 8.520000e-79 305.0
36 TraesCS3B01G452200 chr4B 90.351 114 6 5 3974 4083 2431895 2432007 1.970000e-30 145.0
37 TraesCS3B01G452200 chr2B 96.703 182 5 1 3570 3751 555319865 555319685 1.100000e-77 302.0
38 TraesCS3B01G452200 chr7A 95.135 185 8 1 3566 3750 733370592 733370409 2.390000e-74 291.0
39 TraesCS3B01G452200 chr7A 94.000 100 5 1 3974 4073 461522669 461522571 4.220000e-32 150.0
40 TraesCS3B01G452200 chr5B 98.864 88 1 0 3974 4061 517417391 517417478 2.520000e-34 158.0
41 TraesCS3B01G452200 chr6A 96.739 92 3 0 3973 4064 591741945 591742036 3.270000e-33 154.0
42 TraesCS3B01G452200 chr4A 94.898 98 3 2 3970 4067 710175452 710175357 1.170000e-32 152.0
43 TraesCS3B01G452200 chr7B 95.745 94 2 2 3970 4063 634299283 634299374 4.220000e-32 150.0
44 TraesCS3B01G452200 chr6D 91.011 89 7 1 5894 5981 379159564 379159476 1.190000e-22 119.0
45 TraesCS3B01G452200 chr6D 89.888 89 8 1 5894 5981 265667796 265667884 5.540000e-21 113.0
46 TraesCS3B01G452200 chr6D 89.888 89 8 1 5894 5981 283850898 283850986 5.540000e-21 113.0
47 TraesCS3B01G452200 chr6D 89.888 89 8 1 5894 5981 377642883 377642971 5.540000e-21 113.0
48 TraesCS3B01G452200 chr2D 91.011 89 7 1 5894 5981 194390221 194390309 1.190000e-22 119.0
49 TraesCS3B01G452200 chr1D 89.888 89 8 1 5894 5981 295568313 295568401 5.540000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G452200 chr3B 693337001 693343761 6760 True 12486.000000 12486 100.000000 1 6761 1 chr3B.!!$R1 6760
1 TraesCS3B01G452200 chr3D 525468286 525474976 6690 True 1155.900000 5491 92.163429 1 6663 7 chr3D.!!$R3 6662
2 TraesCS3B01G452200 chr3A 659551379 659557514 6135 True 1344.833333 4741 89.616167 1 6761 6 chr3A.!!$R1 6760
3 TraesCS3B01G452200 chr4D 56312657 56314274 1617 False 469.000000 472 88.433000 6190 6581 2 chr4D.!!$F3 391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 535 1.134367 CAGACATCCTACGAAGCGGAA 59.866 52.381 0.00 0.0 34.17 4.30 F
1037 1066 0.033228 CATCACATCTCCCTCTCGCC 59.967 60.000 0.00 0.0 0.00 5.54 F
2706 2759 0.790207 AGTGTGCGTGCTTCGTAATG 59.210 50.000 0.00 0.0 42.13 1.90 F
3704 3829 0.035534 TGGTGCTGCCACGTATGAAT 60.036 50.000 0.00 0.0 43.61 2.57 F
3739 3864 0.031314 CGTGCAGGCATCGTCTATCT 59.969 55.000 0.00 0.0 0.00 1.98 F
3815 3945 0.597568 TATATACGTGAACGGGCGGG 59.402 55.000 7.86 0.0 44.95 6.13 F
5659 6278 0.322906 GCTCACTTGGAAGGGAAGGG 60.323 60.000 0.00 0.0 38.14 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1594 0.689080 GCATCCTCTCCTCCACCAGA 60.689 60.000 0.00 0.00 0.00 3.86 R
2750 2810 1.070843 CGTGCAGGTAAAACAGACACG 60.071 52.381 0.00 0.00 42.59 4.49 R
3720 3845 0.031314 AGATAGACGATGCCTGCACG 59.969 55.000 10.88 10.88 0.00 5.34 R
5068 5673 0.106819 GCCATCTGGTTCATGGAGCT 60.107 55.000 4.52 0.00 43.32 4.09 R
5638 6257 0.674895 CTTCCCTTCCAAGTGAGCGG 60.675 60.000 0.00 0.00 0.00 5.52 R
5706 6377 1.301637 CCATGTCTGTCCGTGTGCA 60.302 57.895 0.00 0.00 0.00 4.57 R
6663 9085 0.034896 TGGACAAGACCTCGCCTTTC 59.965 55.000 0.00 0.00 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 6.794374 ACGTATATCAATTGCATTGCTCAAA 58.206 32.000 10.49 0.00 40.05 2.69
137 138 7.365840 AGAGTTAAGAAAAGCCACGAAATAG 57.634 36.000 0.00 0.00 0.00 1.73
301 302 1.348250 CACGACCAATCATTCGGCG 59.652 57.895 0.00 0.00 39.63 6.46
343 344 2.989824 CCCTCGTCCACGTCAGGT 60.990 66.667 6.21 0.00 40.80 4.00
527 529 1.135489 GCGACACAGACATCCTACGAA 60.135 52.381 0.00 0.00 0.00 3.85
533 535 1.134367 CAGACATCCTACGAAGCGGAA 59.866 52.381 0.00 0.00 34.17 4.30
534 536 1.822990 AGACATCCTACGAAGCGGAAA 59.177 47.619 0.00 0.00 34.17 3.13
535 537 2.431057 AGACATCCTACGAAGCGGAAAT 59.569 45.455 0.00 0.00 34.17 2.17
573 575 4.760047 GTCCACGGACGCATGGCT 62.760 66.667 0.00 0.00 35.81 4.75
638 640 2.661718 GAAACAAAAGTCTCCCACCCA 58.338 47.619 0.00 0.00 0.00 4.51
742 756 4.699522 GCGGTGGTCGAAGCCCTT 62.700 66.667 0.00 0.00 42.43 3.95
974 991 4.364686 CACCCCCTACCCCCACCT 62.365 72.222 0.00 0.00 0.00 4.00
990 1019 1.738099 CCTCGCACCTACACACAGC 60.738 63.158 0.00 0.00 0.00 4.40
992 1021 3.112075 CGCACCTACACACAGCGG 61.112 66.667 0.00 0.00 44.20 5.52
1030 1059 2.079158 CACACACACATCACATCTCCC 58.921 52.381 0.00 0.00 0.00 4.30
1036 1065 0.749649 ACATCACATCTCCCTCTCGC 59.250 55.000 0.00 0.00 0.00 5.03
1037 1066 0.033228 CATCACATCTCCCTCTCGCC 59.967 60.000 0.00 0.00 0.00 5.54
1038 1067 1.118356 ATCACATCTCCCTCTCGCCC 61.118 60.000 0.00 0.00 0.00 6.13
1039 1068 1.760086 CACATCTCCCTCTCGCCCT 60.760 63.158 0.00 0.00 0.00 5.19
1040 1069 1.456705 ACATCTCCCTCTCGCCCTC 60.457 63.158 0.00 0.00 0.00 4.30
1041 1070 2.203422 ATCTCCCTCTCGCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
1996 2025 3.224324 GGCGAGGCGATCTACCCA 61.224 66.667 0.00 0.00 0.00 4.51
2119 2148 4.373116 GCGTTCGTCCCAGCTGGA 62.373 66.667 34.91 17.23 42.41 3.86
2255 2284 4.491409 GGGAGGCCCGGAAGAAGC 62.491 72.222 0.73 0.00 32.13 3.86
2352 2381 2.665000 CGGCTTCCCTCAAGAGCA 59.335 61.111 0.00 0.00 38.14 4.26
2425 2454 2.743928 GGCCTCTGGACGCAACAG 60.744 66.667 0.00 0.00 37.30 3.16
2587 2640 2.436646 CAGGCGTCGGCTTCCAAT 60.437 61.111 19.96 0.00 35.88 3.16
2696 2749 1.883275 TCCCCAAATAAAGTGTGCGTG 59.117 47.619 0.00 0.00 0.00 5.34
2705 2758 1.508632 AAGTGTGCGTGCTTCGTAAT 58.491 45.000 0.00 0.00 42.13 1.89
2706 2759 0.790207 AGTGTGCGTGCTTCGTAATG 59.210 50.000 0.00 0.00 42.13 1.90
2969 3044 0.528684 CGCGGTCTTCTTCCTCCATC 60.529 60.000 0.00 0.00 0.00 3.51
2970 3045 0.179070 GCGGTCTTCTTCCTCCATCC 60.179 60.000 0.00 0.00 0.00 3.51
2971 3046 0.103208 CGGTCTTCTTCCTCCATCCG 59.897 60.000 0.00 0.00 0.00 4.18
2972 3047 0.179070 GGTCTTCTTCCTCCATCCGC 60.179 60.000 0.00 0.00 0.00 5.54
3069 3186 8.766476 TGATTCCTCTTTGATTAGACAAGATCT 58.234 33.333 0.00 0.00 41.95 2.75
3083 3200 5.757320 AGACAAGATCTATCTTTGGATTGCG 59.243 40.000 0.00 0.00 44.28 4.85
3119 3236 6.512514 AGCTATGAATGGATCTTCCTTTCT 57.487 37.500 17.83 9.68 45.64 2.52
3224 3345 2.674954 TCGATCGGTTGCGACTAAAAA 58.325 42.857 16.41 0.00 0.00 1.94
3336 3457 0.176680 ACATCGGCACATCTCAGGTC 59.823 55.000 0.00 0.00 0.00 3.85
3485 3610 8.976471 CACATCTAGTAAATGACATGATCACTC 58.024 37.037 0.00 0.00 41.24 3.51
3486 3611 8.922237 ACATCTAGTAAATGACATGATCACTCT 58.078 33.333 0.00 0.53 41.24 3.24
3487 3612 9.194271 CATCTAGTAAATGACATGATCACTCTG 57.806 37.037 0.00 0.00 41.24 3.35
3488 3613 7.205992 TCTAGTAAATGACATGATCACTCTGC 58.794 38.462 0.00 0.00 41.24 4.26
3489 3614 5.737860 AGTAAATGACATGATCACTCTGCA 58.262 37.500 0.00 0.00 41.24 4.41
3490 3615 6.354938 AGTAAATGACATGATCACTCTGCAT 58.645 36.000 0.00 0.00 41.24 3.96
3492 3617 3.899052 TGACATGATCACTCTGCATCA 57.101 42.857 0.00 0.00 33.55 3.07
3493 3618 3.528532 TGACATGATCACTCTGCATCAC 58.471 45.455 0.00 0.00 31.80 3.06
3562 3687 5.744171 TGAATACATATGATGGGAATCCGG 58.256 41.667 10.38 0.00 35.24 5.14
3563 3688 4.778213 ATACATATGATGGGAATCCGGG 57.222 45.455 10.38 0.00 35.24 5.73
3564 3689 2.631384 ACATATGATGGGAATCCGGGA 58.369 47.619 10.38 0.00 35.24 5.14
3565 3690 2.573462 ACATATGATGGGAATCCGGGAG 59.427 50.000 10.38 0.00 35.24 4.30
3566 3691 0.984230 TATGATGGGAATCCGGGAGC 59.016 55.000 0.00 0.00 35.24 4.70
3567 3692 1.061905 ATGATGGGAATCCGGGAGCA 61.062 55.000 0.00 0.00 35.24 4.26
3568 3693 1.278302 TGATGGGAATCCGGGAGCAA 61.278 55.000 0.00 0.00 35.24 3.91
3569 3694 0.106719 GATGGGAATCCGGGAGCAAA 60.107 55.000 0.00 0.00 35.24 3.68
3570 3695 0.334676 ATGGGAATCCGGGAGCAAAA 59.665 50.000 0.00 0.00 35.24 2.44
3571 3696 0.334676 TGGGAATCCGGGAGCAAAAT 59.665 50.000 0.00 0.00 35.24 1.82
3572 3697 1.272985 TGGGAATCCGGGAGCAAAATT 60.273 47.619 0.00 0.00 35.24 1.82
3573 3698 1.136891 GGGAATCCGGGAGCAAAATTG 59.863 52.381 0.00 0.00 0.00 2.32
3587 3712 4.591532 CAAAATTGCTTTACACACGACG 57.408 40.909 0.00 0.00 0.00 5.12
3588 3713 2.961522 AATTGCTTTACACACGACGG 57.038 45.000 0.00 0.00 0.00 4.79
3589 3714 1.873698 ATTGCTTTACACACGACGGT 58.126 45.000 0.00 0.00 0.00 4.83
3590 3715 1.654317 TTGCTTTACACACGACGGTT 58.346 45.000 0.00 0.00 0.00 4.44
3591 3716 2.505628 TGCTTTACACACGACGGTTA 57.494 45.000 0.00 0.00 0.00 2.85
3592 3717 2.396601 TGCTTTACACACGACGGTTAG 58.603 47.619 0.00 0.00 0.00 2.34
3593 3718 2.223782 TGCTTTACACACGACGGTTAGT 60.224 45.455 0.00 0.00 0.00 2.24
3594 3719 2.154389 GCTTTACACACGACGGTTAGTG 59.846 50.000 13.63 13.63 43.46 2.74
3595 3720 1.769733 TTACACACGACGGTTAGTGC 58.230 50.000 14.69 0.00 41.72 4.40
3596 3721 0.667453 TACACACGACGGTTAGTGCA 59.333 50.000 14.69 0.00 41.72 4.57
3597 3722 0.872881 ACACACGACGGTTAGTGCAC 60.873 55.000 9.40 9.40 41.72 4.57
3598 3723 1.659335 ACACGACGGTTAGTGCACG 60.659 57.895 12.01 0.95 41.72 5.34
3599 3724 1.370778 CACGACGGTTAGTGCACGA 60.371 57.895 12.01 2.52 0.00 4.35
3600 3725 1.370900 ACGACGGTTAGTGCACGAC 60.371 57.895 12.01 14.04 0.00 4.34
3601 3726 2.423031 CGACGGTTAGTGCACGACG 61.423 63.158 12.01 16.25 39.01 5.12
3602 3727 2.713894 GACGGTTAGTGCACGACGC 61.714 63.158 19.78 12.28 42.89 5.19
3603 3728 2.430244 CGGTTAGTGCACGACGCT 60.430 61.111 12.01 0.00 43.06 5.07
3604 3729 2.019951 CGGTTAGTGCACGACGCTT 61.020 57.895 12.01 0.00 43.06 4.68
3605 3730 1.491563 GGTTAGTGCACGACGCTTG 59.508 57.895 12.01 0.00 43.06 4.01
3606 3731 1.154654 GTTAGTGCACGACGCTTGC 60.155 57.895 12.01 3.65 43.06 4.01
3611 3736 3.777925 GCACGACGCTTGCACGAT 61.778 61.111 3.48 0.00 39.93 3.73
3612 3737 2.853210 CACGACGCTTGCACGATT 59.147 55.556 3.48 0.00 36.70 3.34
3613 3738 1.225475 CACGACGCTTGCACGATTC 60.225 57.895 3.48 0.00 36.70 2.52
3614 3739 1.372997 ACGACGCTTGCACGATTCT 60.373 52.632 3.48 0.00 36.70 2.40
3615 3740 1.341802 CGACGCTTGCACGATTCTC 59.658 57.895 3.48 0.00 36.70 2.87
3616 3741 1.710339 GACGCTTGCACGATTCTCC 59.290 57.895 3.48 0.00 36.70 3.71
3617 3742 1.696832 GACGCTTGCACGATTCTCCC 61.697 60.000 3.48 0.00 36.70 4.30
3618 3743 1.448540 CGCTTGCACGATTCTCCCT 60.449 57.895 0.00 0.00 34.06 4.20
3619 3744 1.424493 CGCTTGCACGATTCTCCCTC 61.424 60.000 0.00 0.00 34.06 4.30
3620 3745 1.092345 GCTTGCACGATTCTCCCTCC 61.092 60.000 0.00 0.00 0.00 4.30
3621 3746 0.462759 CTTGCACGATTCTCCCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
3622 3747 1.910580 TTGCACGATTCTCCCTCCCC 61.911 60.000 0.00 0.00 0.00 4.81
3623 3748 2.367202 GCACGATTCTCCCTCCCCA 61.367 63.158 0.00 0.00 0.00 4.96
3624 3749 1.910580 GCACGATTCTCCCTCCCCAA 61.911 60.000 0.00 0.00 0.00 4.12
3625 3750 0.107654 CACGATTCTCCCTCCCCAAC 60.108 60.000 0.00 0.00 0.00 3.77
3626 3751 0.546747 ACGATTCTCCCTCCCCAACA 60.547 55.000 0.00 0.00 0.00 3.33
3627 3752 0.179000 CGATTCTCCCTCCCCAACAG 59.821 60.000 0.00 0.00 0.00 3.16
3628 3753 0.548510 GATTCTCCCTCCCCAACAGG 59.451 60.000 0.00 0.00 0.00 4.00
3637 3762 2.935481 CCCAACAGGGCTCCTCCA 60.935 66.667 0.00 0.00 35.34 3.86
3638 3763 2.352805 CCAACAGGGCTCCTCCAC 59.647 66.667 0.00 0.00 36.21 4.02
3639 3764 2.528818 CCAACAGGGCTCCTCCACA 61.529 63.158 0.00 0.00 36.21 4.17
3640 3765 1.302832 CAACAGGGCTCCTCCACAC 60.303 63.158 0.00 0.00 36.21 3.82
3641 3766 1.770110 AACAGGGCTCCTCCACACA 60.770 57.895 0.00 0.00 36.21 3.72
3642 3767 2.056906 AACAGGGCTCCTCCACACAC 62.057 60.000 0.00 0.00 36.21 3.82
3643 3768 3.314331 AGGGCTCCTCCACACACG 61.314 66.667 0.00 0.00 36.21 4.49
3644 3769 4.394712 GGGCTCCTCCACACACGG 62.395 72.222 0.00 0.00 36.21 4.94
3645 3770 3.626924 GGCTCCTCCACACACGGT 61.627 66.667 0.00 0.00 34.01 4.83
3653 3778 3.653009 CACACACGGTGGCTGCTG 61.653 66.667 13.48 3.65 44.04 4.41
3654 3779 4.935495 ACACACGGTGGCTGCTGG 62.935 66.667 13.48 0.00 37.94 4.85
3655 3780 4.935495 CACACGGTGGCTGCTGGT 62.935 66.667 13.48 0.00 0.00 4.00
3656 3781 4.935495 ACACGGTGGCTGCTGGTG 62.935 66.667 13.48 5.58 34.87 4.17
3660 3785 2.914097 GGTGGCTGCTGGTGCTTT 60.914 61.111 0.00 0.00 40.48 3.51
3661 3786 2.501602 GGTGGCTGCTGGTGCTTTT 61.502 57.895 0.00 0.00 40.48 2.27
3662 3787 1.442987 GTGGCTGCTGGTGCTTTTT 59.557 52.632 0.00 0.00 40.48 1.94
3682 3807 5.873179 TTTTTAATTGAGAATCGGTCGCT 57.127 34.783 0.00 0.00 38.61 4.93
3683 3808 4.857871 TTTAATTGAGAATCGGTCGCTG 57.142 40.909 0.00 0.00 38.61 5.18
3684 3809 1.009829 AATTGAGAATCGGTCGCTGC 58.990 50.000 0.00 0.00 38.61 5.25
3685 3810 0.176680 ATTGAGAATCGGTCGCTGCT 59.823 50.000 0.00 0.00 38.61 4.24
3686 3811 0.737367 TTGAGAATCGGTCGCTGCTG 60.737 55.000 0.00 0.00 38.61 4.41
3687 3812 1.880340 GAGAATCGGTCGCTGCTGG 60.880 63.158 0.00 0.00 0.00 4.85
3688 3813 2.125512 GAATCGGTCGCTGCTGGT 60.126 61.111 0.00 0.00 0.00 4.00
3689 3814 2.434884 AATCGGTCGCTGCTGGTG 60.435 61.111 0.00 0.00 0.00 4.17
3699 3824 3.881952 CTGCTGGTGCTGCCACGTA 62.882 63.158 0.00 0.00 43.61 3.57
3700 3825 2.436646 GCTGGTGCTGCCACGTAT 60.437 61.111 0.00 0.00 43.61 3.06
3701 3826 2.753966 GCTGGTGCTGCCACGTATG 61.754 63.158 0.00 0.00 43.61 2.39
3702 3827 1.079197 CTGGTGCTGCCACGTATGA 60.079 57.895 0.00 0.00 43.61 2.15
3703 3828 0.673333 CTGGTGCTGCCACGTATGAA 60.673 55.000 0.00 0.00 43.61 2.57
3704 3829 0.035534 TGGTGCTGCCACGTATGAAT 60.036 50.000 0.00 0.00 43.61 2.57
3705 3830 0.657840 GGTGCTGCCACGTATGAATC 59.342 55.000 0.00 0.00 43.00 2.52
3706 3831 0.301687 GTGCTGCCACGTATGAATCG 59.698 55.000 0.00 0.00 31.34 3.34
3707 3832 0.108377 TGCTGCCACGTATGAATCGT 60.108 50.000 0.00 0.00 42.33 3.73
3708 3833 1.006832 GCTGCCACGTATGAATCGTT 58.993 50.000 0.00 0.00 39.55 3.85
3709 3834 1.004927 GCTGCCACGTATGAATCGTTC 60.005 52.381 0.00 0.00 39.55 3.95
3710 3835 2.267426 CTGCCACGTATGAATCGTTCA 58.733 47.619 0.00 3.49 45.01 3.18
3719 3844 0.657312 TGAATCGTTCATGCATCGGC 59.343 50.000 0.00 0.00 36.06 5.54
3720 3845 0.040958 GAATCGTTCATGCATCGGCC 60.041 55.000 0.00 0.00 40.13 6.13
3721 3846 1.775039 AATCGTTCATGCATCGGCCG 61.775 55.000 22.12 22.12 40.13 6.13
3722 3847 2.923426 ATCGTTCATGCATCGGCCGT 62.923 55.000 27.15 10.00 40.13 5.68
3723 3848 2.404789 GTTCATGCATCGGCCGTG 59.595 61.111 27.15 22.51 40.13 4.94
3724 3849 3.507924 TTCATGCATCGGCCGTGC 61.508 61.111 32.27 32.27 42.81 5.34
3736 3861 2.494445 CCGTGCAGGCATCGTCTA 59.506 61.111 0.00 0.00 0.00 2.59
3737 3862 1.068083 CCGTGCAGGCATCGTCTAT 59.932 57.895 0.00 0.00 0.00 1.98
3738 3863 0.941463 CCGTGCAGGCATCGTCTATC 60.941 60.000 0.00 0.00 0.00 2.08
3739 3864 0.031314 CGTGCAGGCATCGTCTATCT 59.969 55.000 0.00 0.00 0.00 1.98
3740 3865 1.266989 CGTGCAGGCATCGTCTATCTA 59.733 52.381 0.00 0.00 0.00 1.98
3741 3866 2.666895 CGTGCAGGCATCGTCTATCTAG 60.667 54.545 0.00 0.00 0.00 2.43
3742 3867 1.270826 TGCAGGCATCGTCTATCTAGC 59.729 52.381 0.00 0.00 0.00 3.42
3743 3868 1.270826 GCAGGCATCGTCTATCTAGCA 59.729 52.381 0.00 0.00 0.00 3.49
3744 3869 2.288457 GCAGGCATCGTCTATCTAGCAA 60.288 50.000 0.00 0.00 0.00 3.91
3745 3870 3.312828 CAGGCATCGTCTATCTAGCAAC 58.687 50.000 0.00 0.00 0.00 4.17
3746 3871 2.030717 AGGCATCGTCTATCTAGCAACG 60.031 50.000 0.00 0.00 36.50 4.10
3747 3872 1.716581 GCATCGTCTATCTAGCAACGC 59.283 52.381 0.00 0.00 35.22 4.84
3748 3873 2.605823 GCATCGTCTATCTAGCAACGCT 60.606 50.000 0.00 0.00 43.41 5.07
3749 3874 3.230355 CATCGTCTATCTAGCAACGCTC 58.770 50.000 0.00 0.00 40.44 5.03
3793 3923 1.471964 CATTCGTAGTGCGCTCTCTC 58.528 55.000 16.36 9.55 41.07 3.20
3812 3942 5.583854 TCTCTCTATATATACGTGAACGGGC 59.416 44.000 7.86 0.00 44.95 6.13
3813 3943 4.330894 TCTCTATATATACGTGAACGGGCG 59.669 45.833 7.86 0.00 44.95 6.13
3814 3944 2.642139 ATATATACGTGAACGGGCGG 57.358 50.000 7.86 0.00 44.95 6.13
3815 3945 0.597568 TATATACGTGAACGGGCGGG 59.402 55.000 7.86 0.00 44.95 6.13
3875 4005 5.126222 TCACTCCTTGTTAGCATCACTCTAG 59.874 44.000 0.00 0.00 0.00 2.43
3882 4012 7.201866 CCTTGTTAGCATCACTCTAGACAGTAT 60.202 40.741 0.00 0.00 0.00 2.12
3931 4061 8.148351 TCTGATACCATACTTCCTATTTTTCCG 58.852 37.037 0.00 0.00 0.00 4.30
3950 4138 3.057456 TCCGTCTTCTTCTTCTTCTTCCG 60.057 47.826 0.00 0.00 0.00 4.30
3972 4160 6.040504 TCCGAAGTGTATCATATGTTGCTAGT 59.959 38.462 1.90 0.00 0.00 2.57
3973 4161 6.701841 CCGAAGTGTATCATATGTTGCTAGTT 59.298 38.462 1.90 0.00 0.00 2.24
3974 4162 7.865889 CCGAAGTGTATCATATGTTGCTAGTTA 59.134 37.037 1.90 0.00 0.00 2.24
3975 4163 8.691727 CGAAGTGTATCATATGTTGCTAGTTAC 58.308 37.037 1.90 0.00 0.00 2.50
3976 4164 9.751542 GAAGTGTATCATATGTTGCTAGTTACT 57.248 33.333 1.90 0.00 0.00 2.24
3977 4165 9.751542 AAGTGTATCATATGTTGCTAGTTACTC 57.248 33.333 1.90 0.00 0.00 2.59
3978 4166 8.361139 AGTGTATCATATGTTGCTAGTTACTCC 58.639 37.037 1.90 0.00 0.00 3.85
3979 4167 7.599245 GTGTATCATATGTTGCTAGTTACTCCC 59.401 40.741 1.90 0.00 0.00 4.30
3980 4168 7.509318 TGTATCATATGTTGCTAGTTACTCCCT 59.491 37.037 1.90 0.00 0.00 4.20
3981 4169 6.406692 TCATATGTTGCTAGTTACTCCCTC 57.593 41.667 1.90 0.00 0.00 4.30
3982 4170 5.304614 TCATATGTTGCTAGTTACTCCCTCC 59.695 44.000 1.90 0.00 0.00 4.30
3983 4171 1.822990 TGTTGCTAGTTACTCCCTCCG 59.177 52.381 0.00 0.00 0.00 4.63
3984 4172 1.823610 GTTGCTAGTTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
3985 4173 3.019564 GTTGCTAGTTACTCCCTCCGTA 58.980 50.000 0.00 0.00 0.00 4.02
3986 4174 3.370840 TGCTAGTTACTCCCTCCGTAA 57.629 47.619 0.00 0.00 0.00 3.18
3987 4175 3.700538 TGCTAGTTACTCCCTCCGTAAA 58.299 45.455 0.00 0.00 0.00 2.01
3988 4176 3.445096 TGCTAGTTACTCCCTCCGTAAAC 59.555 47.826 0.00 0.00 0.00 2.01
3989 4177 3.698539 GCTAGTTACTCCCTCCGTAAACT 59.301 47.826 0.00 0.00 0.00 2.66
3990 4178 4.884164 GCTAGTTACTCCCTCCGTAAACTA 59.116 45.833 0.00 0.00 0.00 2.24
3991 4179 5.358160 GCTAGTTACTCCCTCCGTAAACTAA 59.642 44.000 0.00 0.00 0.00 2.24
3992 4180 6.040278 GCTAGTTACTCCCTCCGTAAACTAAT 59.960 42.308 0.00 0.00 0.00 1.73
3993 4181 7.229506 GCTAGTTACTCCCTCCGTAAACTAATA 59.770 40.741 0.00 0.00 0.00 0.98
3994 4182 9.294614 CTAGTTACTCCCTCCGTAAACTAATAT 57.705 37.037 0.00 0.00 0.00 1.28
3996 4184 9.646522 AGTTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
3997 4185 9.905171 GTTACTCCCTCCGTAAACTAATATAAG 57.095 37.037 0.00 0.00 0.00 1.73
3998 4186 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
3999 4187 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4000 4188 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4001 4189 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
4002 4190 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
4003 4191 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
4004 4192 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
4005 4193 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
4006 4194 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
4007 4195 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
4054 4242 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
4055 4243 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
4056 4244 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
4152 4500 4.458397 CTGGTACAATGATGGCTCTTGAT 58.542 43.478 0.00 0.00 38.70 2.57
4229 4577 4.280677 AGAACACTGGTGAGAGAAGAGAAG 59.719 45.833 7.78 0.00 0.00 2.85
4308 4656 4.262976 CACAAAACGTTTCTTCTGCTTGAC 59.737 41.667 15.01 0.00 0.00 3.18
4332 4680 2.224113 TGTAGGTGACTTTGTTCGGTCC 60.224 50.000 0.00 0.00 43.67 4.46
4383 4731 4.991056 GTGCTTTACTCTGATGTCAAGTCA 59.009 41.667 0.00 0.00 0.00 3.41
4399 4747 6.883756 TGTCAAGTCAGGCAAATATGTAATGA 59.116 34.615 0.00 0.00 0.00 2.57
4487 4846 2.028839 TGATCAGTTGCTGCCATTTTGG 60.029 45.455 0.00 0.00 41.55 3.28
4497 4856 1.079888 CCATTTTGGGAGCGTTGGC 60.080 57.895 0.00 0.00 34.59 4.52
4530 4889 9.703677 TTATCACAATATATACTATCCCGTCCA 57.296 33.333 0.00 0.00 0.00 4.02
4578 4937 8.550376 TGTACTATGAGGTCAACGTTTTAAAAC 58.450 33.333 19.15 19.15 35.59 2.43
4583 4942 6.094061 TGAGGTCAACGTTTTAAAACTTTGG 58.906 36.000 32.68 21.60 43.90 3.28
4609 4971 6.089551 CCTCTTGTATGTGCGTAAGTATATGC 59.910 42.308 0.00 0.00 43.13 3.14
4701 5211 8.771286 TGCATATCTCCCTATTCTTTATGCATA 58.229 33.333 1.16 1.16 43.05 3.14
4721 5231 8.523915 TGCATATTATGAGGTCAAAATCAAGT 57.476 30.769 7.87 0.00 0.00 3.16
4798 5308 8.375493 AGTATATAGGACTGTTTGTCTTTGGA 57.625 34.615 0.00 0.00 44.74 3.53
4799 5309 8.478877 AGTATATAGGACTGTTTGTCTTTGGAG 58.521 37.037 0.00 0.00 44.74 3.86
4800 5310 3.933861 AGGACTGTTTGTCTTTGGAGT 57.066 42.857 0.00 0.00 44.74 3.85
4801 5311 4.236527 AGGACTGTTTGTCTTTGGAGTT 57.763 40.909 0.00 0.00 44.74 3.01
4802 5312 4.600062 AGGACTGTTTGTCTTTGGAGTTT 58.400 39.130 0.00 0.00 44.74 2.66
4803 5313 4.399303 AGGACTGTTTGTCTTTGGAGTTTG 59.601 41.667 0.00 0.00 44.74 2.93
4804 5314 4.440112 GGACTGTTTGTCTTTGGAGTTTGG 60.440 45.833 0.00 0.00 44.74 3.28
4821 5331 9.976511 TGGAGTTTGGATATCTAATTAAGTACG 57.023 33.333 1.98 0.00 0.00 3.67
4822 5332 9.978044 GGAGTTTGGATATCTAATTAAGTACGT 57.022 33.333 1.98 0.00 0.00 3.57
4839 5439 6.847956 AGTACGTACTAGCAGAACTATCTG 57.152 41.667 26.36 1.50 44.26 2.90
4862 5466 5.291371 TGTGTTCTTGTTGTGCATTTGAATG 59.709 36.000 0.00 0.00 39.40 2.67
4869 5473 6.528014 TGTTGTGCATTTGAATGAATTGTC 57.472 33.333 7.86 0.00 38.70 3.18
4902 5506 4.568760 GCTAATCTCAGCCTTTCTGTGTAC 59.431 45.833 0.00 0.00 43.32 2.90
4935 5540 1.215647 CGGCGTGAAGGTAAGAGCT 59.784 57.895 0.00 0.00 0.00 4.09
5068 5673 2.903357 GATCTCGCCAGGAAGCCA 59.097 61.111 0.00 0.00 0.00 4.75
5069 5674 1.227497 GATCTCGCCAGGAAGCCAG 60.227 63.158 0.00 0.00 0.00 4.85
5141 5748 2.700897 CGATCCCCCATTGAAGACTACT 59.299 50.000 0.00 0.00 0.00 2.57
5142 5749 3.134804 CGATCCCCCATTGAAGACTACTT 59.865 47.826 0.00 0.00 39.24 2.24
5143 5750 4.344102 CGATCCCCCATTGAAGACTACTTA 59.656 45.833 0.00 0.00 36.39 2.24
5144 5751 5.163343 CGATCCCCCATTGAAGACTACTTAA 60.163 44.000 0.00 0.00 36.39 1.85
5167 5774 5.455056 TTAGCTAGCTCAAGTATACCTGC 57.545 43.478 23.26 0.00 0.00 4.85
5169 5776 4.730966 AGCTAGCTCAAGTATACCTGCTA 58.269 43.478 12.68 7.68 32.72 3.49
5221 5828 2.380410 CGTGCTTCCGTGTACTGCC 61.380 63.158 0.00 0.00 0.00 4.85
5262 5869 8.132362 GGATGATGATACTAAAGTAGCTATCGG 58.868 40.741 6.91 0.00 37.75 4.18
5263 5870 7.997773 TGATGATACTAAAGTAGCTATCGGT 57.002 36.000 6.91 0.00 37.75 4.69
5264 5871 8.405418 TGATGATACTAAAGTAGCTATCGGTT 57.595 34.615 6.91 0.00 37.75 4.44
5265 5872 8.857098 TGATGATACTAAAGTAGCTATCGGTTT 58.143 33.333 6.91 0.00 37.75 3.27
5266 5873 9.344309 GATGATACTAAAGTAGCTATCGGTTTC 57.656 37.037 6.91 0.00 37.75 2.78
5267 5874 8.461249 TGATACTAAAGTAGCTATCGGTTTCT 57.539 34.615 6.91 0.00 37.75 2.52
5268 5875 8.910944 TGATACTAAAGTAGCTATCGGTTTCTT 58.089 33.333 6.91 0.00 37.75 2.52
5269 5876 9.182933 GATACTAAAGTAGCTATCGGTTTCTTG 57.817 37.037 0.00 0.00 34.37 3.02
5313 5920 2.151202 CATGGTCCGTGCTGTTAAACT 58.849 47.619 0.00 0.00 0.00 2.66
5370 5979 5.234752 ACATGCTCTTATTCGTTGTGTGTA 58.765 37.500 0.00 0.00 0.00 2.90
5372 5981 3.678072 TGCTCTTATTCGTTGTGTGTAGC 59.322 43.478 0.00 0.00 0.00 3.58
5391 6000 1.960689 GCCCTCCTAACAAGCAAACAA 59.039 47.619 0.00 0.00 0.00 2.83
5392 6001 2.029918 GCCCTCCTAACAAGCAAACAAG 60.030 50.000 0.00 0.00 0.00 3.16
5393 6002 3.222603 CCCTCCTAACAAGCAAACAAGT 58.777 45.455 0.00 0.00 0.00 3.16
5395 6004 3.253432 CCTCCTAACAAGCAAACAAGTCC 59.747 47.826 0.00 0.00 0.00 3.85
5396 6005 3.219281 TCCTAACAAGCAAACAAGTCCC 58.781 45.455 0.00 0.00 0.00 4.46
5435 6044 5.106436 TGCATAGCTTTTGAATGACACTGAG 60.106 40.000 0.00 0.00 0.00 3.35
5518 6130 1.419374 GCCTCGTAGCCATAATGACG 58.581 55.000 0.00 0.00 36.66 4.35
5584 6196 0.952280 GTCATATGGCCTCGAGTCGA 59.048 55.000 15.64 15.64 0.00 4.20
5585 6197 1.542030 GTCATATGGCCTCGAGTCGAT 59.458 52.381 16.94 3.65 34.61 3.59
5588 6200 4.575236 GTCATATGGCCTCGAGTCGATATA 59.425 45.833 16.94 12.35 34.61 0.86
5589 6201 5.066117 GTCATATGGCCTCGAGTCGATATAA 59.934 44.000 16.94 3.15 34.61 0.98
5590 6202 5.828328 TCATATGGCCTCGAGTCGATATAAT 59.172 40.000 16.94 10.37 34.61 1.28
5591 6203 4.640789 ATGGCCTCGAGTCGATATAATC 57.359 45.455 16.94 3.91 34.61 1.75
5594 6206 4.082733 TGGCCTCGAGTCGATATAATCTTG 60.083 45.833 16.94 0.46 34.61 3.02
5595 6207 3.854809 GCCTCGAGTCGATATAATCTTGC 59.145 47.826 16.94 4.38 34.61 4.01
5596 6208 4.616143 GCCTCGAGTCGATATAATCTTGCA 60.616 45.833 16.94 0.00 34.61 4.08
5597 6209 5.461526 CCTCGAGTCGATATAATCTTGCAA 58.538 41.667 16.94 0.00 34.61 4.08
5598 6210 5.570973 CCTCGAGTCGATATAATCTTGCAAG 59.429 44.000 20.81 20.81 34.61 4.01
5599 6211 5.461526 TCGAGTCGATATAATCTTGCAAGG 58.538 41.667 25.73 7.62 0.00 3.61
5600 6212 4.090642 CGAGTCGATATAATCTTGCAAGGC 59.909 45.833 25.73 0.00 0.00 4.35
5601 6213 5.220710 AGTCGATATAATCTTGCAAGGCT 57.779 39.130 25.73 15.28 0.00 4.58
5602 6214 5.615289 AGTCGATATAATCTTGCAAGGCTT 58.385 37.500 25.73 20.14 0.00 4.35
5603 6215 5.468072 AGTCGATATAATCTTGCAAGGCTTG 59.532 40.000 25.73 22.75 0.00 4.01
5604 6216 4.756642 TCGATATAATCTTGCAAGGCTTGG 59.243 41.667 27.25 12.03 0.00 3.61
5605 6217 4.083110 CGATATAATCTTGCAAGGCTTGGG 60.083 45.833 27.25 4.73 0.00 4.12
5606 6218 1.851304 TAATCTTGCAAGGCTTGGGG 58.149 50.000 27.25 3.96 0.00 4.96
5607 6219 1.547472 AATCTTGCAAGGCTTGGGGC 61.547 55.000 27.25 14.61 40.90 5.80
5608 6220 4.060038 CTTGCAAGGCTTGGGGCG 62.060 66.667 27.25 3.18 42.94 6.13
5609 6221 4.912395 TTGCAAGGCTTGGGGCGT 62.912 61.111 27.25 0.00 42.94 5.68
5613 6225 2.123468 AAGGCTTGGGGCGTTGTT 60.123 55.556 0.00 0.00 45.64 2.83
5614 6226 1.760480 AAGGCTTGGGGCGTTGTTT 60.760 52.632 0.00 0.00 45.64 2.83
5615 6227 2.026945 AAGGCTTGGGGCGTTGTTTG 62.027 55.000 0.00 0.00 45.64 2.93
5638 6257 2.203070 CGCTCCATACCCACCAGC 60.203 66.667 0.00 0.00 0.00 4.85
5655 6274 3.068881 CCGCTCACTTGGAAGGGA 58.931 61.111 0.00 0.00 35.74 4.20
5656 6275 1.374947 CCGCTCACTTGGAAGGGAA 59.625 57.895 0.00 0.00 38.14 3.97
5657 6276 0.674895 CCGCTCACTTGGAAGGGAAG 60.675 60.000 0.00 0.00 38.14 3.46
5658 6277 0.674895 CGCTCACTTGGAAGGGAAGG 60.675 60.000 0.00 0.00 38.14 3.46
5659 6278 0.322906 GCTCACTTGGAAGGGAAGGG 60.323 60.000 0.00 0.00 38.14 3.95
5691 6354 2.879233 TTCCAGCCTTTCGAGCGGT 61.879 57.895 0.00 0.00 34.64 5.68
5692 6355 3.121030 CCAGCCTTTCGAGCGGTG 61.121 66.667 0.00 3.04 34.64 4.94
5698 6361 0.457851 CCTTTCGAGCGGTGATCTCT 59.542 55.000 0.00 0.00 0.00 3.10
5706 6377 0.179000 GCGGTGATCTCTCCAATGGT 59.821 55.000 0.00 0.00 0.00 3.55
5715 6386 1.302431 CTCCAATGGTGCACACGGA 60.302 57.895 20.43 16.07 33.97 4.69
5731 6403 1.434622 CGGACAGACATGGCATCAGC 61.435 60.000 0.00 0.00 35.42 4.26
5770 6442 3.303938 ACAGCTATCATGTGCCTACTCT 58.696 45.455 0.00 0.00 0.00 3.24
5774 6446 3.320541 GCTATCATGTGCCTACTCTCTGT 59.679 47.826 0.00 0.00 0.00 3.41
5788 6460 7.598278 CCTACTCTCTGTAACCTGCTATATTG 58.402 42.308 0.00 0.00 0.00 1.90
5800 6472 2.159014 TGCTATATTGTTTCGGCGTCCT 60.159 45.455 6.85 0.00 0.00 3.85
5826 6498 2.676342 CTGCGGCTATAAAAAGACCGTT 59.324 45.455 0.00 0.00 45.53 4.44
5864 6543 4.097286 GCTTACAACCTTCACTTCCAACAA 59.903 41.667 0.00 0.00 0.00 2.83
5872 6551 1.035139 CACTTCCAACAAAGCTGCCT 58.965 50.000 0.00 0.00 0.00 4.75
5886 7073 2.187163 GCCTGTAGCGACTTCCCC 59.813 66.667 0.00 0.00 0.00 4.81
5887 7074 2.901042 CCTGTAGCGACTTCCCCC 59.099 66.667 0.00 0.00 0.00 5.40
5888 7075 1.686110 CCTGTAGCGACTTCCCCCT 60.686 63.158 0.00 0.00 0.00 4.79
5889 7076 1.677637 CCTGTAGCGACTTCCCCCTC 61.678 65.000 0.00 0.00 0.00 4.30
5890 7077 0.684805 CTGTAGCGACTTCCCCCTCT 60.685 60.000 0.00 0.00 0.00 3.69
5891 7078 0.683504 TGTAGCGACTTCCCCCTCTC 60.684 60.000 0.00 0.00 0.00 3.20
5892 7079 0.396001 GTAGCGACTTCCCCCTCTCT 60.396 60.000 0.00 0.00 0.00 3.10
5893 7080 0.335361 TAGCGACTTCCCCCTCTCTT 59.665 55.000 0.00 0.00 0.00 2.85
5894 7081 1.219393 GCGACTTCCCCCTCTCTTG 59.781 63.158 0.00 0.00 0.00 3.02
5895 7082 1.258445 GCGACTTCCCCCTCTCTTGA 61.258 60.000 0.00 0.00 0.00 3.02
5896 7083 1.267121 CGACTTCCCCCTCTCTTGAA 58.733 55.000 0.00 0.00 0.00 2.69
5897 7084 1.834263 CGACTTCCCCCTCTCTTGAAT 59.166 52.381 0.00 0.00 0.00 2.57
5898 7085 3.031736 CGACTTCCCCCTCTCTTGAATA 58.968 50.000 0.00 0.00 0.00 1.75
5899 7086 3.643792 CGACTTCCCCCTCTCTTGAATAT 59.356 47.826 0.00 0.00 0.00 1.28
5900 7087 4.101741 CGACTTCCCCCTCTCTTGAATATT 59.898 45.833 0.00 0.00 0.00 1.28
5901 7088 5.616270 GACTTCCCCCTCTCTTGAATATTC 58.384 45.833 8.60 8.60 0.00 1.75
5902 7089 4.413851 ACTTCCCCCTCTCTTGAATATTCC 59.586 45.833 12.90 0.00 0.00 3.01
5903 7090 3.327439 TCCCCCTCTCTTGAATATTCCC 58.673 50.000 12.90 0.00 0.00 3.97
5904 7091 3.050251 TCCCCCTCTCTTGAATATTCCCT 60.050 47.826 12.90 0.00 0.00 4.20
5905 7092 3.329225 CCCCCTCTCTTGAATATTCCCTC 59.671 52.174 12.90 0.00 0.00 4.30
5906 7093 3.329225 CCCCTCTCTTGAATATTCCCTCC 59.671 52.174 12.90 0.00 0.00 4.30
5907 7094 3.007398 CCCTCTCTTGAATATTCCCTCCG 59.993 52.174 12.90 0.00 0.00 4.63
5908 7095 3.643792 CCTCTCTTGAATATTCCCTCCGT 59.356 47.826 12.90 0.00 0.00 4.69
5909 7096 4.262249 CCTCTCTTGAATATTCCCTCCGTC 60.262 50.000 12.90 0.00 0.00 4.79
5910 7097 3.641906 TCTCTTGAATATTCCCTCCGTCC 59.358 47.826 12.90 0.00 0.00 4.79
5911 7098 2.704065 TCTTGAATATTCCCTCCGTCCC 59.296 50.000 12.90 0.00 0.00 4.46
5912 7099 2.184088 TGAATATTCCCTCCGTCCCA 57.816 50.000 12.90 0.00 0.00 4.37
5913 7100 2.701551 TGAATATTCCCTCCGTCCCAT 58.298 47.619 12.90 0.00 0.00 4.00
5914 7101 3.864328 TGAATATTCCCTCCGTCCCATA 58.136 45.455 12.90 0.00 0.00 2.74
5915 7102 4.236195 TGAATATTCCCTCCGTCCCATAA 58.764 43.478 12.90 0.00 0.00 1.90
5916 7103 4.849810 TGAATATTCCCTCCGTCCCATAAT 59.150 41.667 12.90 0.00 0.00 1.28
5917 7104 6.026834 TGAATATTCCCTCCGTCCCATAATA 58.973 40.000 12.90 0.00 0.00 0.98
5918 7105 6.676632 TGAATATTCCCTCCGTCCCATAATAT 59.323 38.462 12.90 0.00 0.00 1.28
5919 7106 7.847335 TGAATATTCCCTCCGTCCCATAATATA 59.153 37.037 12.90 0.00 0.00 0.86
5920 7107 8.632731 AATATTCCCTCCGTCCCATAATATAA 57.367 34.615 0.00 0.00 0.00 0.98
5921 7108 6.963117 ATTCCCTCCGTCCCATAATATAAA 57.037 37.500 0.00 0.00 0.00 1.40
5922 7109 5.750352 TCCCTCCGTCCCATAATATAAAC 57.250 43.478 0.00 0.00 0.00 2.01
5923 7110 5.156649 TCCCTCCGTCCCATAATATAAACA 58.843 41.667 0.00 0.00 0.00 2.83
5924 7111 5.012354 TCCCTCCGTCCCATAATATAAACAC 59.988 44.000 0.00 0.00 0.00 3.32
5925 7112 4.927425 CCTCCGTCCCATAATATAAACACG 59.073 45.833 0.00 0.00 0.00 4.49
5926 7113 5.510179 CCTCCGTCCCATAATATAAACACGT 60.510 44.000 0.00 0.00 0.00 4.49
5927 7114 5.916318 TCCGTCCCATAATATAAACACGTT 58.084 37.500 0.00 0.00 0.00 3.99
5928 7115 6.347696 TCCGTCCCATAATATAAACACGTTT 58.652 36.000 0.22 0.22 36.63 3.60
5929 7116 6.822676 TCCGTCCCATAATATAAACACGTTTT 59.177 34.615 0.00 0.00 34.23 2.43
5930 7117 7.336427 TCCGTCCCATAATATAAACACGTTTTT 59.664 33.333 4.90 4.90 34.23 1.94
5958 7145 9.120538 ACACTACACTAATGTCAAAAATGTTCT 57.879 29.630 0.00 0.00 40.48 3.01
5959 7146 9.599322 CACTACACTAATGTCAAAAATGTTCTC 57.401 33.333 0.00 0.00 40.48 2.87
5960 7147 9.337396 ACTACACTAATGTCAAAAATGTTCTCA 57.663 29.630 0.00 0.00 40.48 3.27
5968 7155 9.787532 AATGTCAAAAATGTTCTCATATTACGG 57.212 29.630 0.00 0.00 33.49 4.02
5969 7156 7.757526 TGTCAAAAATGTTCTCATATTACGGG 58.242 34.615 0.00 0.00 33.49 5.28
5970 7157 7.608376 TGTCAAAAATGTTCTCATATTACGGGA 59.392 33.333 0.00 0.00 33.49 5.14
5971 7158 8.455682 GTCAAAAATGTTCTCATATTACGGGAA 58.544 33.333 0.00 0.00 33.49 3.97
5972 7159 8.673711 TCAAAAATGTTCTCATATTACGGGAAG 58.326 33.333 0.00 0.00 33.49 3.46
5973 7160 7.568199 AAAATGTTCTCATATTACGGGAAGG 57.432 36.000 0.00 0.00 33.49 3.46
5974 7161 6.494666 AATGTTCTCATATTACGGGAAGGA 57.505 37.500 0.00 0.00 33.49 3.36
5975 7162 5.272283 TGTTCTCATATTACGGGAAGGAC 57.728 43.478 0.00 0.00 0.00 3.85
5976 7163 4.202080 TGTTCTCATATTACGGGAAGGACG 60.202 45.833 0.00 0.00 37.36 4.79
5977 7164 2.889045 TCTCATATTACGGGAAGGACGG 59.111 50.000 0.00 0.00 35.23 4.79
5978 7165 2.889045 CTCATATTACGGGAAGGACGGA 59.111 50.000 0.00 0.00 35.23 4.69
5979 7166 2.889045 TCATATTACGGGAAGGACGGAG 59.111 50.000 0.00 0.00 35.23 4.63
5993 7180 2.896745 ACGGAGTTGTTTACGACCTT 57.103 45.000 0.00 0.00 37.78 3.50
5994 7181 2.747436 ACGGAGTTGTTTACGACCTTC 58.253 47.619 0.00 0.00 37.78 3.46
5995 7182 2.101249 ACGGAGTTGTTTACGACCTTCA 59.899 45.455 0.00 0.00 37.78 3.02
5996 7183 2.473984 CGGAGTTGTTTACGACCTTCAC 59.526 50.000 0.00 0.00 0.00 3.18
5997 7184 3.725490 GGAGTTGTTTACGACCTTCACT 58.275 45.455 0.00 0.00 0.00 3.41
5998 7185 4.124970 GGAGTTGTTTACGACCTTCACTT 58.875 43.478 0.00 0.00 0.00 3.16
5999 7186 4.025145 GGAGTTGTTTACGACCTTCACTTG 60.025 45.833 0.00 0.00 0.00 3.16
6000 7187 3.311596 AGTTGTTTACGACCTTCACTTGC 59.688 43.478 0.00 0.00 0.00 4.01
6001 7188 2.907634 TGTTTACGACCTTCACTTGCA 58.092 42.857 0.00 0.00 0.00 4.08
6002 7189 3.271729 TGTTTACGACCTTCACTTGCAA 58.728 40.909 0.00 0.00 0.00 4.08
6003 7190 3.064271 TGTTTACGACCTTCACTTGCAAC 59.936 43.478 0.00 0.00 0.00 4.17
6004 7191 2.605837 TACGACCTTCACTTGCAACA 57.394 45.000 0.00 0.00 0.00 3.33
6005 7192 1.014352 ACGACCTTCACTTGCAACAC 58.986 50.000 0.00 0.00 0.00 3.32
6006 7193 1.013596 CGACCTTCACTTGCAACACA 58.986 50.000 0.00 0.00 0.00 3.72
6007 7194 1.003545 CGACCTTCACTTGCAACACAG 60.004 52.381 0.00 0.00 0.00 3.66
6008 7195 0.740737 ACCTTCACTTGCAACACAGC 59.259 50.000 0.00 0.00 0.00 4.40
6009 7196 1.027357 CCTTCACTTGCAACACAGCT 58.973 50.000 0.00 0.00 34.99 4.24
6010 7197 1.268896 CCTTCACTTGCAACACAGCTG 60.269 52.381 13.48 13.48 34.99 4.24
6011 7198 0.101040 TTCACTTGCAACACAGCTGC 59.899 50.000 15.27 0.00 40.35 5.25
6012 7199 0.749091 TCACTTGCAACACAGCTGCT 60.749 50.000 15.27 0.00 40.59 4.24
6013 7200 0.946528 CACTTGCAACACAGCTGCTA 59.053 50.000 15.27 0.00 40.59 3.49
6014 7201 1.069432 CACTTGCAACACAGCTGCTAG 60.069 52.381 15.27 9.18 44.79 3.42
6015 7202 0.520404 CTTGCAACACAGCTGCTAGG 59.480 55.000 15.27 3.53 38.49 3.02
6016 7203 0.890542 TTGCAACACAGCTGCTAGGG 60.891 55.000 15.27 0.39 40.59 3.53
6052 7239 4.431131 CCATGCGCTTCCCCCACT 62.431 66.667 9.73 0.00 0.00 4.00
6055 7242 3.210012 ATGCGCTTCCCCCACTGTT 62.210 57.895 9.73 0.00 0.00 3.16
6094 7281 0.978146 AGGACGAGGAGGGATGTTGG 60.978 60.000 0.00 0.00 0.00 3.77
6112 7299 1.198713 GGATGAGGAGCAAGTGGAGA 58.801 55.000 0.00 0.00 0.00 3.71
6121 7308 2.069776 CAAGTGGAGAAGGAGGCCA 58.930 57.895 5.01 0.00 0.00 5.36
6167 7364 1.257750 ATGTGCTAGAGGTGTGCGGA 61.258 55.000 0.00 0.00 0.00 5.54
6168 7365 1.446272 GTGCTAGAGGTGTGCGGAC 60.446 63.158 0.00 0.00 0.00 4.79
6174 7371 2.994995 AGGTGTGCGGACGGATCA 60.995 61.111 1.60 0.00 0.00 2.92
6182 7379 2.029666 GGACGGATCATGCCCTCG 59.970 66.667 0.00 0.00 0.00 4.63
6183 7380 2.498941 GGACGGATCATGCCCTCGA 61.499 63.158 0.00 0.00 0.00 4.04
6184 7381 1.668294 GACGGATCATGCCCTCGAT 59.332 57.895 0.00 0.00 0.00 3.59
6185 7382 0.668706 GACGGATCATGCCCTCGATG 60.669 60.000 0.00 0.00 0.00 3.84
6186 7383 1.115326 ACGGATCATGCCCTCGATGA 61.115 55.000 0.00 0.00 34.37 2.92
6187 7384 0.389556 CGGATCATGCCCTCGATGAG 60.390 60.000 0.00 0.00 33.38 2.90
6195 7392 3.555967 CCTCGATGAGGGAAGGGG 58.444 66.667 4.89 0.00 45.43 4.79
6196 7393 2.812619 CCTCGATGAGGGAAGGGGC 61.813 68.421 4.89 0.00 45.43 5.80
6207 7404 2.203582 AAGGGGCCGTTTGGTTCC 60.204 61.111 5.47 0.00 37.67 3.62
6314 7928 9.665264 CCTTTCATTGTACTAGTGAAAAAGTTC 57.335 33.333 5.39 0.00 42.23 3.01
6319 7933 8.567948 CATTGTACTAGTGAAAAAGTTCCACAT 58.432 33.333 5.39 0.00 32.28 3.21
6388 8002 6.311445 CAGTCAAAATAGCGTGAATAGTGACT 59.689 38.462 0.00 0.00 42.85 3.41
6591 9013 2.438392 GGTATTTCCCCCTCGATGAGTT 59.562 50.000 0.00 0.00 0.00 3.01
6644 9066 0.325860 TTAGGGTATCCAGCACGGGT 60.326 55.000 0.00 0.00 34.83 5.28
6663 9085 0.250424 TGCATGCAGATCCCGTATGG 60.250 55.000 18.46 0.00 0.00 2.74
6677 9099 1.134788 CGTATGGAAAGGCGAGGTCTT 60.135 52.381 0.00 0.00 0.00 3.01
6680 9102 0.034896 TGGAAAGGCGAGGTCTTGTC 59.965 55.000 0.00 0.00 0.00 3.18
6681 9103 0.673956 GGAAAGGCGAGGTCTTGTCC 60.674 60.000 0.00 0.00 0.00 4.02
6696 9118 2.800881 TGTCCACGCAGCTCATATAG 57.199 50.000 0.00 0.00 0.00 1.31
6707 9129 2.570752 AGCTCATATAGGGCCTCATGTG 59.429 50.000 10.74 16.37 0.00 3.21
6712 9134 1.422161 ATAGGGCCTCATGTGCTCCC 61.422 60.000 10.74 12.70 37.24 4.30
6719 9141 0.322277 CTCATGTGCTCCCTGTTGCT 60.322 55.000 0.00 0.00 0.00 3.91
6722 9144 0.403271 ATGTGCTCCCTGTTGCTTCT 59.597 50.000 0.00 0.00 0.00 2.85
6725 9147 1.276421 GTGCTCCCTGTTGCTTCTCTA 59.724 52.381 0.00 0.00 0.00 2.43
6726 9148 2.093235 GTGCTCCCTGTTGCTTCTCTAT 60.093 50.000 0.00 0.00 0.00 1.98
6732 9154 4.164221 TCCCTGTTGCTTCTCTATTAAGGG 59.836 45.833 0.00 0.00 42.75 3.95
6752 9174 2.359107 CATGGGATGCGCGCCTAT 60.359 61.111 30.77 17.17 0.00 2.57
6753 9175 2.359107 ATGGGATGCGCGCCTATG 60.359 61.111 30.77 0.00 0.00 2.23
6756 9178 3.720193 GGATGCGCGCCTATGCAG 61.720 66.667 30.77 0.00 45.52 4.41
6757 9179 3.720193 GATGCGCGCCTATGCAGG 61.720 66.667 30.77 0.00 45.52 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 5.360714 ACTCTTTCTGGAAATGTTTGAGCAA 59.639 36.000 8.29 0.00 0.00 3.91
101 102 8.138074 GCTTTTCTTAACTCTTTCTGGAAATGT 58.862 33.333 0.00 0.00 0.00 2.71
125 126 3.402628 AGTCAACACTATTTCGTGGCT 57.597 42.857 0.00 0.00 39.19 4.75
137 138 0.168128 GTTGCGGCCATAGTCAACAC 59.832 55.000 2.24 0.00 38.78 3.32
301 302 3.047280 TGGTTGCGATGACGTGGC 61.047 61.111 0.00 0.00 41.98 5.01
312 313 1.577328 CGAGGGACACATGTGGTTGC 61.577 60.000 28.64 14.39 34.19 4.17
380 381 4.832608 GAACTAGGGGTGGCGCGG 62.833 72.222 8.83 0.00 0.00 6.46
594 596 1.396996 GCGTGATAATGTTGACCGCTT 59.603 47.619 0.00 0.00 36.94 4.68
638 640 3.008813 TGTCAGTTACGACCTCTCTACCT 59.991 47.826 0.00 0.00 34.88 3.08
684 698 1.520342 GTCCTGCTCGATGACAGCC 60.520 63.158 5.05 0.00 35.89 4.85
742 756 1.371183 CGGACCCAGCTTCAGTGAA 59.629 57.895 5.25 5.25 0.00 3.18
802 817 2.193248 CTTTCCATCCCCCGCTCC 59.807 66.667 0.00 0.00 0.00 4.70
894 909 4.828925 GGAGAGAGTGCGGCTGCC 62.829 72.222 16.57 9.11 41.78 4.85
990 1019 2.050442 GCCAAAGCGTTTGTCCCG 60.050 61.111 8.83 0.00 38.98 5.14
992 1021 2.050442 CGGCCAAAGCGTTTGTCC 60.050 61.111 2.24 5.49 41.24 4.02
1037 1066 3.591835 GAGAGCGAGAGGGCGAGG 61.592 72.222 0.00 0.00 38.18 4.63
1038 1067 3.947841 CGAGAGCGAGAGGGCGAG 61.948 72.222 0.00 0.00 40.82 5.03
1565 1594 0.689080 GCATCCTCTCCTCCACCAGA 60.689 60.000 0.00 0.00 0.00 3.86
2017 2046 4.435436 CTCACGGCCACGCTGCTA 62.435 66.667 2.24 0.00 46.04 3.49
2576 2629 1.089481 CGCTGCTTATTGGAAGCCGA 61.089 55.000 6.82 0.00 42.36 5.54
2585 2638 2.117156 CCTGCTGCCGCTGCTTATT 61.117 57.895 21.13 0.00 38.71 1.40
2587 2640 4.020617 ACCTGCTGCCGCTGCTTA 62.021 61.111 21.13 3.28 38.71 3.09
2685 2738 1.292061 TTACGAAGCACGCACACTTT 58.708 45.000 0.00 0.00 46.94 2.66
2750 2810 1.070843 CGTGCAGGTAAAACAGACACG 60.071 52.381 0.00 0.00 42.59 4.49
2752 2812 1.588674 CCGTGCAGGTAAAACAGACA 58.411 50.000 5.57 0.00 34.51 3.41
2972 3047 3.567579 AAGTGGTGCATGGGTCGGG 62.568 63.158 0.00 0.00 0.00 5.14
3034 3146 7.459795 AATCAAAGAGGAATCAAGGAGAAAC 57.540 36.000 0.00 0.00 0.00 2.78
3069 3186 2.418368 ACAGGCGCAATCCAAAGATA 57.582 45.000 10.83 0.00 30.42 1.98
3083 3200 4.873746 TTCATAGCTAGGTCATACAGGC 57.126 45.455 5.15 0.00 0.00 4.85
3224 3345 4.484537 CATCCATGGAAGAAGAGACACT 57.515 45.455 20.67 0.00 0.00 3.55
3336 3457 2.586079 CGGTACCGCATGCTCCAG 60.586 66.667 23.44 4.24 0.00 3.86
3485 3610 1.293963 CGTGTCCCACAGTGATGCAG 61.294 60.000 0.62 0.00 33.40 4.41
3486 3611 1.301637 CGTGTCCCACAGTGATGCA 60.302 57.895 0.62 0.00 33.40 3.96
3487 3612 2.680913 GCGTGTCCCACAGTGATGC 61.681 63.158 0.62 0.00 33.40 3.91
3488 3613 0.674581 ATGCGTGTCCCACAGTGATG 60.675 55.000 0.62 0.00 33.40 3.07
3489 3614 0.674581 CATGCGTGTCCCACAGTGAT 60.675 55.000 0.62 0.00 33.40 3.06
3490 3615 1.301637 CATGCGTGTCCCACAGTGA 60.302 57.895 0.62 0.00 33.40 3.41
3492 3617 2.669569 GCATGCGTGTCCCACAGT 60.670 61.111 0.00 0.00 33.40 3.55
3493 3618 2.359107 AGCATGCGTGTCCCACAG 60.359 61.111 13.01 0.00 33.40 3.66
3566 3691 3.420576 CCGTCGTGTGTAAAGCAATTTTG 59.579 43.478 0.00 0.00 0.00 2.44
3567 3692 3.065648 ACCGTCGTGTGTAAAGCAATTTT 59.934 39.130 0.00 0.00 0.00 1.82
3568 3693 2.614983 ACCGTCGTGTGTAAAGCAATTT 59.385 40.909 0.00 0.00 0.00 1.82
3569 3694 2.215196 ACCGTCGTGTGTAAAGCAATT 58.785 42.857 0.00 0.00 0.00 2.32
3570 3695 1.873698 ACCGTCGTGTGTAAAGCAAT 58.126 45.000 0.00 0.00 0.00 3.56
3571 3696 1.654317 AACCGTCGTGTGTAAAGCAA 58.346 45.000 0.00 0.00 0.00 3.91
3572 3697 2.223782 ACTAACCGTCGTGTGTAAAGCA 60.224 45.455 0.00 0.00 0.00 3.91
3573 3698 2.154389 CACTAACCGTCGTGTGTAAAGC 59.846 50.000 0.00 0.00 0.00 3.51
3574 3699 2.154389 GCACTAACCGTCGTGTGTAAAG 59.846 50.000 0.00 0.00 33.78 1.85
3575 3700 2.126467 GCACTAACCGTCGTGTGTAAA 58.874 47.619 0.00 0.00 33.78 2.01
3576 3701 1.066757 TGCACTAACCGTCGTGTGTAA 59.933 47.619 0.00 0.00 33.78 2.41
3577 3702 0.667453 TGCACTAACCGTCGTGTGTA 59.333 50.000 0.00 0.00 33.78 2.90
3578 3703 0.872881 GTGCACTAACCGTCGTGTGT 60.873 55.000 10.32 0.00 33.78 3.72
3579 3704 1.850640 GTGCACTAACCGTCGTGTG 59.149 57.895 10.32 0.00 33.78 3.82
3580 3705 1.659335 CGTGCACTAACCGTCGTGT 60.659 57.895 16.19 0.00 33.78 4.49
3581 3706 1.370778 TCGTGCACTAACCGTCGTG 60.371 57.895 16.19 0.00 0.00 4.35
3582 3707 1.370900 GTCGTGCACTAACCGTCGT 60.371 57.895 16.19 0.00 0.00 4.34
3583 3708 2.423031 CGTCGTGCACTAACCGTCG 61.423 63.158 16.19 7.08 0.00 5.12
3584 3709 2.713894 GCGTCGTGCACTAACCGTC 61.714 63.158 16.19 0.00 45.45 4.79
3585 3710 2.732094 GCGTCGTGCACTAACCGT 60.732 61.111 16.19 0.00 45.45 4.83
3588 3713 1.827315 TGCAAGCGTCGTGCACTAAC 61.827 55.000 16.19 11.88 46.76 2.34
3589 3714 1.592939 TGCAAGCGTCGTGCACTAA 60.593 52.632 16.19 0.00 46.76 2.24
3590 3715 2.028337 TGCAAGCGTCGTGCACTA 59.972 55.556 16.19 0.00 46.76 2.74
3594 3719 3.295228 AATCGTGCAAGCGTCGTGC 62.295 57.895 9.89 9.89 46.98 5.34
3595 3720 1.225475 GAATCGTGCAAGCGTCGTG 60.225 57.895 0.00 0.00 0.00 4.35
3596 3721 1.344942 GAGAATCGTGCAAGCGTCGT 61.345 55.000 0.00 0.00 0.00 4.34
3597 3722 1.341802 GAGAATCGTGCAAGCGTCG 59.658 57.895 0.00 0.00 0.00 5.12
3598 3723 1.696832 GGGAGAATCGTGCAAGCGTC 61.697 60.000 0.00 0.00 34.37 5.19
3599 3724 1.741770 GGGAGAATCGTGCAAGCGT 60.742 57.895 0.00 0.00 34.37 5.07
3600 3725 1.424493 GAGGGAGAATCGTGCAAGCG 61.424 60.000 0.00 0.00 34.37 4.68
3601 3726 1.092345 GGAGGGAGAATCGTGCAAGC 61.092 60.000 0.00 0.00 34.37 4.01
3602 3727 0.462759 GGGAGGGAGAATCGTGCAAG 60.463 60.000 0.00 0.00 34.37 4.01
3603 3728 1.602237 GGGAGGGAGAATCGTGCAA 59.398 57.895 0.00 0.00 34.37 4.08
3604 3729 2.367202 GGGGAGGGAGAATCGTGCA 61.367 63.158 0.00 0.00 34.37 4.57
3605 3730 1.910580 TTGGGGAGGGAGAATCGTGC 61.911 60.000 0.00 0.00 34.37 5.34
3606 3731 0.107654 GTTGGGGAGGGAGAATCGTG 60.108 60.000 0.00 0.00 34.37 4.35
3607 3732 0.546747 TGTTGGGGAGGGAGAATCGT 60.547 55.000 0.00 0.00 34.37 3.73
3608 3733 0.179000 CTGTTGGGGAGGGAGAATCG 59.821 60.000 0.00 0.00 34.37 3.34
3609 3734 0.548510 CCTGTTGGGGAGGGAGAATC 59.451 60.000 0.00 0.00 0.00 2.52
3610 3735 2.715295 CCTGTTGGGGAGGGAGAAT 58.285 57.895 0.00 0.00 0.00 2.40
3611 3736 4.250699 CCTGTTGGGGAGGGAGAA 57.749 61.111 0.00 0.00 0.00 2.87
3621 3746 2.352805 GTGGAGGAGCCCTGTTGG 59.647 66.667 0.00 0.00 31.76 3.77
3622 3747 1.302832 GTGTGGAGGAGCCCTGTTG 60.303 63.158 0.00 0.00 31.76 3.33
3623 3748 1.770110 TGTGTGGAGGAGCCCTGTT 60.770 57.895 0.00 0.00 31.76 3.16
3624 3749 2.122413 TGTGTGGAGGAGCCCTGT 60.122 61.111 0.00 0.00 31.76 4.00
3625 3750 2.348998 GTGTGTGGAGGAGCCCTG 59.651 66.667 0.00 0.00 31.76 4.45
3626 3751 3.314331 CGTGTGTGGAGGAGCCCT 61.314 66.667 0.00 0.00 36.03 5.19
3627 3752 4.394712 CCGTGTGTGGAGGAGCCC 62.395 72.222 0.00 0.00 34.97 5.19
3628 3753 3.626924 ACCGTGTGTGGAGGAGCC 61.627 66.667 0.00 0.00 37.10 4.70
3629 3754 2.357517 CACCGTGTGTGGAGGAGC 60.358 66.667 0.00 0.00 41.52 4.70
3636 3761 3.653009 CAGCAGCCACCGTGTGTG 61.653 66.667 0.00 0.00 45.01 3.82
3637 3762 4.935495 CCAGCAGCCACCGTGTGT 62.935 66.667 0.00 0.00 0.00 3.72
3638 3763 4.935495 ACCAGCAGCCACCGTGTG 62.935 66.667 0.00 0.00 0.00 3.82
3639 3764 4.935495 CACCAGCAGCCACCGTGT 62.935 66.667 0.00 0.00 0.00 4.49
3643 3768 2.031674 AAAAAGCACCAGCAGCCACC 62.032 55.000 0.00 0.00 45.49 4.61
3644 3769 1.442987 AAAAAGCACCAGCAGCCAC 59.557 52.632 0.00 0.00 45.49 5.01
3645 3770 3.953300 AAAAAGCACCAGCAGCCA 58.047 50.000 0.00 0.00 45.49 4.75
3660 3785 5.627172 CAGCGACCGATTCTCAATTAAAAA 58.373 37.500 0.00 0.00 0.00 1.94
3661 3786 4.436852 GCAGCGACCGATTCTCAATTAAAA 60.437 41.667 0.00 0.00 0.00 1.52
3662 3787 3.063452 GCAGCGACCGATTCTCAATTAAA 59.937 43.478 0.00 0.00 0.00 1.52
3663 3788 2.607635 GCAGCGACCGATTCTCAATTAA 59.392 45.455 0.00 0.00 0.00 1.40
3664 3789 2.159099 AGCAGCGACCGATTCTCAATTA 60.159 45.455 0.00 0.00 0.00 1.40
3665 3790 1.009829 GCAGCGACCGATTCTCAATT 58.990 50.000 0.00 0.00 0.00 2.32
3666 3791 0.176680 AGCAGCGACCGATTCTCAAT 59.823 50.000 0.00 0.00 0.00 2.57
3667 3792 0.737367 CAGCAGCGACCGATTCTCAA 60.737 55.000 0.00 0.00 0.00 3.02
3668 3793 1.153765 CAGCAGCGACCGATTCTCA 60.154 57.895 0.00 0.00 0.00 3.27
3669 3794 1.880340 CCAGCAGCGACCGATTCTC 60.880 63.158 0.00 0.00 0.00 2.87
3670 3795 2.185350 CCAGCAGCGACCGATTCT 59.815 61.111 0.00 0.00 0.00 2.40
3671 3796 2.125512 ACCAGCAGCGACCGATTC 60.126 61.111 0.00 0.00 0.00 2.52
3672 3797 2.434884 CACCAGCAGCGACCGATT 60.435 61.111 0.00 0.00 0.00 3.34
3686 3811 0.657840 GATTCATACGTGGCAGCACC 59.342 55.000 0.00 0.00 39.84 5.01
3687 3812 0.301687 CGATTCATACGTGGCAGCAC 59.698 55.000 0.00 0.00 0.00 4.40
3688 3813 0.108377 ACGATTCATACGTGGCAGCA 60.108 50.000 0.00 0.00 42.37 4.41
3689 3814 1.004927 GAACGATTCATACGTGGCAGC 60.005 52.381 0.00 0.00 43.16 5.25
3690 3815 2.267426 TGAACGATTCATACGTGGCAG 58.733 47.619 0.00 0.00 43.16 4.85
3691 3816 2.371910 TGAACGATTCATACGTGGCA 57.628 45.000 0.00 0.00 43.16 4.92
3700 3825 0.657312 GCCGATGCATGAACGATTCA 59.343 50.000 2.46 0.00 45.01 2.57
3701 3826 0.040958 GGCCGATGCATGAACGATTC 60.041 55.000 2.46 0.00 40.13 2.52
3702 3827 1.775039 CGGCCGATGCATGAACGATT 61.775 55.000 24.07 0.00 40.13 3.34
3703 3828 2.246739 CGGCCGATGCATGAACGAT 61.247 57.895 24.07 0.00 40.13 3.73
3704 3829 2.889988 CGGCCGATGCATGAACGA 60.890 61.111 24.07 0.00 40.13 3.85
3705 3830 3.195002 ACGGCCGATGCATGAACG 61.195 61.111 35.90 6.01 40.13 3.95
3706 3831 2.404789 CACGGCCGATGCATGAAC 59.595 61.111 35.90 0.00 40.13 3.18
3707 3832 3.507924 GCACGGCCGATGCATGAA 61.508 61.111 33.23 0.00 42.88 2.57
3719 3844 0.941463 GATAGACGATGCCTGCACGG 60.941 60.000 14.98 0.00 0.00 4.94
3720 3845 0.031314 AGATAGACGATGCCTGCACG 59.969 55.000 10.88 10.88 0.00 5.34
3721 3846 2.924454 GCTAGATAGACGATGCCTGCAC 60.924 54.545 0.00 0.00 0.00 4.57
3722 3847 1.270826 GCTAGATAGACGATGCCTGCA 59.729 52.381 0.00 0.00 0.00 4.41
3723 3848 1.270826 TGCTAGATAGACGATGCCTGC 59.729 52.381 0.00 0.00 0.00 4.85
3724 3849 3.312828 GTTGCTAGATAGACGATGCCTG 58.687 50.000 0.00 0.00 0.00 4.85
3725 3850 2.030717 CGTTGCTAGATAGACGATGCCT 60.031 50.000 0.00 0.00 37.69 4.75
3726 3851 2.320367 CGTTGCTAGATAGACGATGCC 58.680 52.381 0.00 0.00 37.69 4.40
3727 3852 1.716581 GCGTTGCTAGATAGACGATGC 59.283 52.381 10.44 3.73 37.69 3.91
3728 3853 3.230355 GAGCGTTGCTAGATAGACGATG 58.770 50.000 10.44 0.00 39.88 3.84
3729 3854 2.879026 TGAGCGTTGCTAGATAGACGAT 59.121 45.455 10.44 5.30 39.88 3.73
3730 3855 2.285977 TGAGCGTTGCTAGATAGACGA 58.714 47.619 10.44 0.00 39.88 4.20
3731 3856 2.757686 TGAGCGTTGCTAGATAGACG 57.242 50.000 0.00 0.00 39.88 4.18
3732 3857 3.570559 GGATGAGCGTTGCTAGATAGAC 58.429 50.000 0.00 0.00 39.88 2.59
3733 3858 2.226674 CGGATGAGCGTTGCTAGATAGA 59.773 50.000 0.00 0.00 39.88 1.98
3734 3859 2.590073 CGGATGAGCGTTGCTAGATAG 58.410 52.381 0.00 0.00 39.88 2.08
3735 3860 1.269723 CCGGATGAGCGTTGCTAGATA 59.730 52.381 0.00 0.00 39.88 1.98
3736 3861 0.032678 CCGGATGAGCGTTGCTAGAT 59.967 55.000 0.00 0.00 39.88 1.98
3737 3862 1.437573 CCGGATGAGCGTTGCTAGA 59.562 57.895 0.00 0.00 39.88 2.43
3738 3863 1.592669 CCCGGATGAGCGTTGCTAG 60.593 63.158 0.73 0.00 39.88 3.42
3739 3864 2.016393 CTCCCGGATGAGCGTTGCTA 62.016 60.000 0.73 0.00 39.88 3.49
3740 3865 3.376935 CTCCCGGATGAGCGTTGCT 62.377 63.158 0.73 0.00 43.88 3.91
3741 3866 2.892425 CTCCCGGATGAGCGTTGC 60.892 66.667 0.73 0.00 0.00 4.17
3747 3872 1.417890 ACTATTTGGCTCCCGGATGAG 59.582 52.381 0.73 2.49 35.40 2.90
3748 3873 1.507140 ACTATTTGGCTCCCGGATGA 58.493 50.000 0.73 0.00 0.00 2.92
3749 3874 2.872038 GCTACTATTTGGCTCCCGGATG 60.872 54.545 0.73 0.00 0.00 3.51
3793 3923 3.488047 CCCGCCCGTTCACGTATATATAG 60.488 52.174 0.00 0.00 37.74 1.31
3812 3942 2.083167 ACAAAATTTCTGCATGCCCG 57.917 45.000 16.68 6.48 0.00 6.13
3813 3943 4.611130 CGAAAACAAAATTTCTGCATGCCC 60.611 41.667 16.68 0.00 37.20 5.36
3814 3944 4.456914 CGAAAACAAAATTTCTGCATGCC 58.543 39.130 16.68 0.00 37.20 4.40
3815 3945 3.901877 GCGAAAACAAAATTTCTGCATGC 59.098 39.130 11.82 11.82 38.02 4.06
3894 4024 6.407202 AGTATGGTATCAGAAACACCACTTC 58.593 40.000 4.46 0.53 44.77 3.01
3950 4138 9.751542 AGTAACTAGCAACATATGATACACTTC 57.248 33.333 10.38 0.00 0.00 3.01
3972 4160 9.866655 TCTTATATTAGTTTACGGAGGGAGTAA 57.133 33.333 0.00 0.00 32.84 2.24
3973 4161 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3974 4162 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3975 4163 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
3976 4164 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
3977 4165 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3978 4166 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3979 4167 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3980 4168 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3981 4169 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
4028 4216 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
4029 4217 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
4030 4218 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4038 4226 9.214962 AGCTAATTACTCCCTCTGTAAACTAAT 57.785 33.333 0.00 0.00 34.20 1.73
4039 4227 8.605325 AGCTAATTACTCCCTCTGTAAACTAA 57.395 34.615 0.00 0.00 34.20 2.24
4040 4228 9.352191 CTAGCTAATTACTCCCTCTGTAAACTA 57.648 37.037 0.00 0.00 34.20 2.24
4041 4229 8.060075 TCTAGCTAATTACTCCCTCTGTAAACT 58.940 37.037 0.00 0.00 34.20 2.66
4042 4230 8.235359 TCTAGCTAATTACTCCCTCTGTAAAC 57.765 38.462 0.00 0.00 34.20 2.01
4043 4231 7.014422 GCTCTAGCTAATTACTCCCTCTGTAAA 59.986 40.741 0.00 0.00 38.21 2.01
4044 4232 6.490721 GCTCTAGCTAATTACTCCCTCTGTAA 59.509 42.308 0.00 0.00 38.21 2.41
4045 4233 6.005198 GCTCTAGCTAATTACTCCCTCTGTA 58.995 44.000 0.00 0.00 38.21 2.74
4046 4234 4.830600 GCTCTAGCTAATTACTCCCTCTGT 59.169 45.833 0.00 0.00 38.21 3.41
4047 4235 5.385509 GCTCTAGCTAATTACTCCCTCTG 57.614 47.826 0.00 0.00 38.21 3.35
4152 4500 4.083217 GCCAAAATCTGCATGCATGAAAAA 60.083 37.500 30.64 11.33 0.00 1.94
4229 4577 5.919196 CAAAATTGTATCAGGCAAGTTTGC 58.081 37.500 14.68 8.30 46.80 3.68
4264 4612 1.897560 ACACAAGGGAAGCTAGCAAC 58.102 50.000 18.83 10.00 0.00 4.17
4266 4614 1.419762 TGAACACAAGGGAAGCTAGCA 59.580 47.619 18.83 0.00 0.00 3.49
4308 4656 2.806244 CCGAACAAAGTCACCTACAAGG 59.194 50.000 0.00 0.00 42.49 3.61
4332 4680 1.030488 CACCCTCCTGCAGCTCATTG 61.030 60.000 8.66 0.00 0.00 2.82
4383 4731 7.702785 AGGGTATGATCATTACATATTTGCCT 58.297 34.615 14.65 7.19 33.70 4.75
4399 4747 5.640158 TGAATTAACGGGAAGGGTATGAT 57.360 39.130 0.00 0.00 0.00 2.45
4469 4820 0.680618 CCCAAAATGGCAGCAACTGA 59.319 50.000 0.00 0.00 35.79 3.41
4479 4838 1.079888 GCCAACGCTCCCAAAATGG 60.080 57.895 0.00 0.00 37.25 3.16
4487 4846 5.411361 TGTGATAATTATATGCCAACGCTCC 59.589 40.000 0.00 0.00 35.36 4.70
4521 4880 6.771573 TCCGTATTATATTTTTGGACGGGAT 58.228 36.000 10.34 0.00 46.38 3.85
4540 4899 9.743581 TGACCTCATAGTACATAATAATCCGTA 57.256 33.333 0.00 0.00 0.00 4.02
4541 4900 8.645814 TGACCTCATAGTACATAATAATCCGT 57.354 34.615 0.00 0.00 0.00 4.69
4578 4937 1.131126 CGCACATACAAGAGGCCAAAG 59.869 52.381 5.01 0.00 0.00 2.77
4583 4942 2.618053 ACTTACGCACATACAAGAGGC 58.382 47.619 0.00 0.00 0.00 4.70
4635 4997 8.839947 TTTGCAAGATGAATACGATGTTATTG 57.160 30.769 0.00 0.00 0.00 1.90
4671 5177 9.848710 CATAAAGAATAGGGAGATATGCATGAT 57.151 33.333 10.16 0.00 0.00 2.45
4701 5211 7.451255 TCCAACACTTGATTTTGACCTCATAAT 59.549 33.333 0.00 0.00 31.74 1.28
4839 5439 5.519566 TCATTCAAATGCACAACAAGAACAC 59.480 36.000 0.00 0.00 36.36 3.32
4843 5443 6.762187 ACAATTCATTCAAATGCACAACAAGA 59.238 30.769 0.00 0.00 36.36 3.02
4862 5466 9.920133 TGAGATTAGCTGATGTATAGACAATTC 57.080 33.333 0.00 0.00 39.59 2.17
4869 5473 6.528537 AGGCTGAGATTAGCTGATGTATAG 57.471 41.667 0.00 0.00 43.22 1.31
4902 5506 2.586079 CCGCGTATCAGCTGGTGG 60.586 66.667 15.13 9.90 34.40 4.61
4935 5540 1.908619 TGCTTGGCTAGATCCTGTTGA 59.091 47.619 0.00 0.00 0.00 3.18
5064 5669 1.203441 TCTGGTTCATGGAGCTGGCT 61.203 55.000 9.88 0.00 0.00 4.75
5068 5673 0.106819 GCCATCTGGTTCATGGAGCT 60.107 55.000 4.52 0.00 43.32 4.09
5069 5674 1.442526 CGCCATCTGGTTCATGGAGC 61.443 60.000 2.76 0.00 43.32 4.70
5141 5748 8.088981 GCAGGTATACTTGAGCTAGCTAATTAA 58.911 37.037 19.38 9.81 0.00 1.40
5142 5749 7.451877 AGCAGGTATACTTGAGCTAGCTAATTA 59.548 37.037 19.38 10.94 31.56 1.40
5143 5750 6.268847 AGCAGGTATACTTGAGCTAGCTAATT 59.731 38.462 19.38 9.19 31.56 1.40
5144 5751 5.777732 AGCAGGTATACTTGAGCTAGCTAAT 59.222 40.000 19.38 8.97 31.56 1.73
5262 5869 2.096218 GCGTCACATCTGACCAAGAAAC 60.096 50.000 0.00 0.00 43.64 2.78
5263 5870 2.143122 GCGTCACATCTGACCAAGAAA 58.857 47.619 0.00 0.00 43.64 2.52
5264 5871 1.344438 AGCGTCACATCTGACCAAGAA 59.656 47.619 0.00 0.00 43.64 2.52
5265 5872 0.969149 AGCGTCACATCTGACCAAGA 59.031 50.000 0.00 0.00 43.64 3.02
5266 5873 1.073964 CAGCGTCACATCTGACCAAG 58.926 55.000 0.00 0.00 43.64 3.61
5267 5874 0.678950 TCAGCGTCACATCTGACCAA 59.321 50.000 0.00 0.00 43.64 3.67
5268 5875 0.678950 TTCAGCGTCACATCTGACCA 59.321 50.000 0.00 0.00 43.64 4.02
5269 5876 1.067565 TCTTCAGCGTCACATCTGACC 60.068 52.381 0.00 0.00 43.64 4.02
5326 5935 3.266510 TCATGCATGTACAGAAGGGTC 57.733 47.619 25.43 0.00 0.00 4.46
5351 5960 3.062234 GGCTACACACAACGAATAAGAGC 59.938 47.826 0.00 0.00 0.00 4.09
5353 5962 3.259876 AGGGCTACACACAACGAATAAGA 59.740 43.478 0.00 0.00 0.00 2.10
5370 5979 1.144913 TGTTTGCTTGTTAGGAGGGCT 59.855 47.619 0.00 0.00 0.00 5.19
5372 5981 3.222603 ACTTGTTTGCTTGTTAGGAGGG 58.777 45.455 0.00 0.00 0.00 4.30
5391 6000 3.679389 CAATGCAAGACTAACTGGGACT 58.321 45.455 0.00 0.00 0.00 3.85
5392 6001 2.162408 GCAATGCAAGACTAACTGGGAC 59.838 50.000 0.00 0.00 0.00 4.46
5393 6002 2.224744 TGCAATGCAAGACTAACTGGGA 60.225 45.455 5.01 0.00 34.76 4.37
5395 6004 4.497006 GCTATGCAATGCAAGACTAACTGG 60.497 45.833 13.45 0.00 43.62 4.00
5396 6005 4.334759 AGCTATGCAATGCAAGACTAACTG 59.665 41.667 13.45 0.00 43.62 3.16
5504 6116 2.185004 ATGCCCGTCATTATGGCTAC 57.815 50.000 0.00 0.00 45.56 3.58
5518 6130 2.488153 GGCCAAAATAGTCGATATGCCC 59.512 50.000 0.00 0.00 0.00 5.36
5584 6196 4.154942 CCCCAAGCCTTGCAAGATTATAT 58.845 43.478 28.05 4.80 0.00 0.86
5585 6197 3.565307 CCCCAAGCCTTGCAAGATTATA 58.435 45.455 28.05 0.00 0.00 0.98
5588 6200 1.547472 GCCCCAAGCCTTGCAAGATT 61.547 55.000 28.05 18.05 34.35 2.40
5589 6201 1.986210 GCCCCAAGCCTTGCAAGAT 60.986 57.895 28.05 12.96 34.35 2.40
5590 6202 2.601367 GCCCCAAGCCTTGCAAGA 60.601 61.111 28.05 0.00 34.35 3.02
5591 6203 4.060038 CGCCCCAAGCCTTGCAAG 62.060 66.667 19.93 19.93 38.78 4.01
5594 6206 4.362476 CAACGCCCCAAGCCTTGC 62.362 66.667 0.00 0.00 38.78 4.01
5595 6207 2.026945 AAACAACGCCCCAAGCCTTG 62.027 55.000 0.00 0.00 41.59 3.61
5596 6208 1.760480 AAACAACGCCCCAAGCCTT 60.760 52.632 0.00 0.00 38.78 4.35
5597 6209 2.123468 AAACAACGCCCCAAGCCT 60.123 55.556 0.00 0.00 38.78 4.58
5598 6210 2.028925 CAAACAACGCCCCAAGCC 59.971 61.111 0.00 0.00 38.78 4.35
5599 6211 2.028925 CCAAACAACGCCCCAAGC 59.971 61.111 0.00 0.00 38.52 4.01
5600 6212 1.659794 CTCCAAACAACGCCCCAAG 59.340 57.895 0.00 0.00 0.00 3.61
5601 6213 1.830408 CCTCCAAACAACGCCCCAA 60.830 57.895 0.00 0.00 0.00 4.12
5602 6214 2.203422 CCTCCAAACAACGCCCCA 60.203 61.111 0.00 0.00 0.00 4.96
5603 6215 2.989253 CCCTCCAAACAACGCCCC 60.989 66.667 0.00 0.00 0.00 5.80
5604 6216 3.680786 GCCCTCCAAACAACGCCC 61.681 66.667 0.00 0.00 0.00 6.13
5605 6217 4.038080 CGCCCTCCAAACAACGCC 62.038 66.667 0.00 0.00 0.00 5.68
5606 6218 4.700365 GCGCCCTCCAAACAACGC 62.700 66.667 0.00 0.00 39.49 4.84
5607 6219 2.966309 GAGCGCCCTCCAAACAACG 61.966 63.158 2.29 0.00 31.68 4.10
5608 6220 2.954611 GAGCGCCCTCCAAACAAC 59.045 61.111 2.29 0.00 31.68 3.32
5638 6257 0.674895 CTTCCCTTCCAAGTGAGCGG 60.675 60.000 0.00 0.00 0.00 5.52
5672 6335 2.391389 CCGCTCGAAAGGCTGGAAC 61.391 63.158 0.00 0.00 0.00 3.62
5691 6354 1.629861 TGTGCACCATTGGAGAGATCA 59.370 47.619 15.69 0.00 0.00 2.92
5692 6355 2.012673 GTGTGCACCATTGGAGAGATC 58.987 52.381 15.69 0.00 0.00 2.75
5698 6361 1.599518 GTCCGTGTGCACCATTGGA 60.600 57.895 15.69 12.96 0.00 3.53
5706 6377 1.301637 CCATGTCTGTCCGTGTGCA 60.302 57.895 0.00 0.00 0.00 4.57
5715 6386 1.460504 CTTGCTGATGCCATGTCTGT 58.539 50.000 0.00 0.00 38.71 3.41
5731 6403 3.186909 CTGTCATTGATTGGCATGCTTG 58.813 45.455 18.92 4.65 39.74 4.01
5744 6416 3.211865 AGGCACATGATAGCTGTCATTG 58.788 45.455 22.00 21.21 36.72 2.82
5749 6421 3.303938 AGAGTAGGCACATGATAGCTGT 58.696 45.455 0.00 0.00 0.00 4.40
5770 6442 6.046593 CCGAAACAATATAGCAGGTTACAGA 58.953 40.000 0.00 0.00 0.00 3.41
5774 6446 3.805422 CGCCGAAACAATATAGCAGGTTA 59.195 43.478 0.00 0.00 0.00 2.85
5805 6477 2.277084 ACGGTCTTTTTATAGCCGCAG 58.723 47.619 0.00 0.00 45.53 5.18
5826 6498 3.961849 TGTAAGCTATTCAACCATGGCA 58.038 40.909 13.04 0.00 33.17 4.92
5864 6543 0.390472 GAAGTCGCTACAGGCAGCTT 60.390 55.000 0.00 0.00 41.91 3.74
5872 6551 0.683504 GAGAGGGGGAAGTCGCTACA 60.684 60.000 0.00 0.00 0.00 2.74
5880 7067 4.202514 GGGAATATTCAAGAGAGGGGGAAG 60.203 50.000 17.07 0.00 0.00 3.46
5881 7068 3.722101 GGGAATATTCAAGAGAGGGGGAA 59.278 47.826 17.07 0.00 0.00 3.97
5882 7069 3.050251 AGGGAATATTCAAGAGAGGGGGA 60.050 47.826 17.07 0.00 0.00 4.81
5883 7070 3.329225 GAGGGAATATTCAAGAGAGGGGG 59.671 52.174 17.07 0.00 0.00 5.40
5884 7071 3.329225 GGAGGGAATATTCAAGAGAGGGG 59.671 52.174 17.07 0.00 0.00 4.79
5885 7072 3.007398 CGGAGGGAATATTCAAGAGAGGG 59.993 52.174 17.07 0.00 0.00 4.30
5886 7073 3.643792 ACGGAGGGAATATTCAAGAGAGG 59.356 47.826 17.07 2.90 0.00 3.69
5887 7074 4.262249 GGACGGAGGGAATATTCAAGAGAG 60.262 50.000 17.07 6.23 0.00 3.20
5888 7075 3.641906 GGACGGAGGGAATATTCAAGAGA 59.358 47.826 17.07 0.00 0.00 3.10
5889 7076 3.244249 GGGACGGAGGGAATATTCAAGAG 60.244 52.174 17.07 6.69 0.00 2.85
5890 7077 2.704065 GGGACGGAGGGAATATTCAAGA 59.296 50.000 17.07 0.00 0.00 3.02
5891 7078 2.438021 TGGGACGGAGGGAATATTCAAG 59.562 50.000 17.07 5.74 0.00 3.02
5892 7079 2.483547 TGGGACGGAGGGAATATTCAA 58.516 47.619 17.07 0.00 0.00 2.69
5893 7080 2.184088 TGGGACGGAGGGAATATTCA 57.816 50.000 17.07 0.00 0.00 2.57
5894 7081 4.903045 TTATGGGACGGAGGGAATATTC 57.097 45.455 6.93 6.93 0.00 1.75
5895 7082 8.632731 TTATATTATGGGACGGAGGGAATATT 57.367 34.615 0.00 0.00 0.00 1.28
5896 7083 8.491958 GTTTATATTATGGGACGGAGGGAATAT 58.508 37.037 0.00 0.00 0.00 1.28
5897 7084 7.458488 TGTTTATATTATGGGACGGAGGGAATA 59.542 37.037 0.00 0.00 0.00 1.75
5898 7085 6.273730 TGTTTATATTATGGGACGGAGGGAAT 59.726 38.462 0.00 0.00 0.00 3.01
5899 7086 5.607592 TGTTTATATTATGGGACGGAGGGAA 59.392 40.000 0.00 0.00 0.00 3.97
5900 7087 5.012354 GTGTTTATATTATGGGACGGAGGGA 59.988 44.000 0.00 0.00 0.00 4.20
5901 7088 5.243207 GTGTTTATATTATGGGACGGAGGG 58.757 45.833 0.00 0.00 0.00 4.30
5902 7089 4.927425 CGTGTTTATATTATGGGACGGAGG 59.073 45.833 0.00 0.00 0.00 4.30
5903 7090 5.535333 ACGTGTTTATATTATGGGACGGAG 58.465 41.667 0.00 0.00 0.00 4.63
5904 7091 5.534207 ACGTGTTTATATTATGGGACGGA 57.466 39.130 0.00 0.00 0.00 4.69
5905 7092 6.607735 AAACGTGTTTATATTATGGGACGG 57.392 37.500 0.00 0.00 0.00 4.79
5932 7119 9.120538 AGAACATTTTTGACATTAGTGTAGTGT 57.879 29.630 0.00 0.00 39.09 3.55
5933 7120 9.599322 GAGAACATTTTTGACATTAGTGTAGTG 57.401 33.333 0.00 0.00 39.09 2.74
5934 7121 9.337396 TGAGAACATTTTTGACATTAGTGTAGT 57.663 29.630 0.00 0.00 39.09 2.73
5942 7129 9.787532 CCGTAATATGAGAACATTTTTGACATT 57.212 29.630 0.00 0.00 37.87 2.71
5943 7130 8.405531 CCCGTAATATGAGAACATTTTTGACAT 58.594 33.333 0.00 0.00 37.87 3.06
5944 7131 7.608376 TCCCGTAATATGAGAACATTTTTGACA 59.392 33.333 0.00 0.00 37.87 3.58
5945 7132 7.981142 TCCCGTAATATGAGAACATTTTTGAC 58.019 34.615 0.00 0.00 37.87 3.18
5946 7133 8.568676 TTCCCGTAATATGAGAACATTTTTGA 57.431 30.769 0.00 0.00 37.87 2.69
5947 7134 7.915397 CCTTCCCGTAATATGAGAACATTTTTG 59.085 37.037 0.00 0.00 37.87 2.44
5948 7135 7.832187 TCCTTCCCGTAATATGAGAACATTTTT 59.168 33.333 0.00 0.00 37.87 1.94
5949 7136 7.282450 GTCCTTCCCGTAATATGAGAACATTTT 59.718 37.037 0.00 0.00 37.87 1.82
5950 7137 6.766467 GTCCTTCCCGTAATATGAGAACATTT 59.234 38.462 0.00 0.00 37.87 2.32
5951 7138 6.289064 GTCCTTCCCGTAATATGAGAACATT 58.711 40.000 0.00 0.00 37.87 2.71
5952 7139 5.509163 CGTCCTTCCCGTAATATGAGAACAT 60.509 44.000 0.00 0.00 40.16 2.71
5953 7140 4.202080 CGTCCTTCCCGTAATATGAGAACA 60.202 45.833 0.00 0.00 0.00 3.18
5954 7141 4.296690 CGTCCTTCCCGTAATATGAGAAC 58.703 47.826 0.00 0.00 0.00 3.01
5955 7142 3.319972 CCGTCCTTCCCGTAATATGAGAA 59.680 47.826 0.00 0.00 0.00 2.87
5956 7143 2.889045 CCGTCCTTCCCGTAATATGAGA 59.111 50.000 0.00 0.00 0.00 3.27
5957 7144 2.889045 TCCGTCCTTCCCGTAATATGAG 59.111 50.000 0.00 0.00 0.00 2.90
5958 7145 2.889045 CTCCGTCCTTCCCGTAATATGA 59.111 50.000 0.00 0.00 0.00 2.15
5959 7146 2.626743 ACTCCGTCCTTCCCGTAATATG 59.373 50.000 0.00 0.00 0.00 1.78
5960 7147 2.954792 ACTCCGTCCTTCCCGTAATAT 58.045 47.619 0.00 0.00 0.00 1.28
5961 7148 2.428171 CAACTCCGTCCTTCCCGTAATA 59.572 50.000 0.00 0.00 0.00 0.98
5962 7149 1.206371 CAACTCCGTCCTTCCCGTAAT 59.794 52.381 0.00 0.00 0.00 1.89
5963 7150 0.604578 CAACTCCGTCCTTCCCGTAA 59.395 55.000 0.00 0.00 0.00 3.18
5964 7151 0.540365 ACAACTCCGTCCTTCCCGTA 60.540 55.000 0.00 0.00 0.00 4.02
5965 7152 1.405272 AACAACTCCGTCCTTCCCGT 61.405 55.000 0.00 0.00 0.00 5.28
5966 7153 0.250166 AAACAACTCCGTCCTTCCCG 60.250 55.000 0.00 0.00 0.00 5.14
5967 7154 2.420642 GTAAACAACTCCGTCCTTCCC 58.579 52.381 0.00 0.00 0.00 3.97
5968 7155 2.064014 CGTAAACAACTCCGTCCTTCC 58.936 52.381 0.00 0.00 0.00 3.46
5969 7156 2.728318 GTCGTAAACAACTCCGTCCTTC 59.272 50.000 0.00 0.00 0.00 3.46
5970 7157 2.546584 GGTCGTAAACAACTCCGTCCTT 60.547 50.000 0.00 0.00 0.00 3.36
5971 7158 1.000171 GGTCGTAAACAACTCCGTCCT 60.000 52.381 0.00 0.00 0.00 3.85
5972 7159 1.000171 AGGTCGTAAACAACTCCGTCC 60.000 52.381 0.00 0.00 0.00 4.79
5973 7160 2.428888 AGGTCGTAAACAACTCCGTC 57.571 50.000 0.00 0.00 0.00 4.79
5974 7161 2.101249 TGAAGGTCGTAAACAACTCCGT 59.899 45.455 0.00 0.00 0.00 4.69
5975 7162 2.473984 GTGAAGGTCGTAAACAACTCCG 59.526 50.000 0.00 0.00 0.00 4.63
5976 7163 3.725490 AGTGAAGGTCGTAAACAACTCC 58.275 45.455 0.00 0.00 0.00 3.85
5977 7164 4.552184 GCAAGTGAAGGTCGTAAACAACTC 60.552 45.833 0.00 0.00 0.00 3.01
5978 7165 3.311596 GCAAGTGAAGGTCGTAAACAACT 59.688 43.478 0.00 0.00 0.00 3.16
5979 7166 3.064271 TGCAAGTGAAGGTCGTAAACAAC 59.936 43.478 0.00 0.00 0.00 3.32
5980 7167 3.271729 TGCAAGTGAAGGTCGTAAACAA 58.728 40.909 0.00 0.00 0.00 2.83
5981 7168 2.907634 TGCAAGTGAAGGTCGTAAACA 58.092 42.857 0.00 0.00 0.00 2.83
5982 7169 3.064271 TGTTGCAAGTGAAGGTCGTAAAC 59.936 43.478 0.00 0.00 0.00 2.01
5983 7170 3.064271 GTGTTGCAAGTGAAGGTCGTAAA 59.936 43.478 0.00 0.00 0.00 2.01
5984 7171 2.610374 GTGTTGCAAGTGAAGGTCGTAA 59.390 45.455 0.00 0.00 0.00 3.18
5985 7172 2.206750 GTGTTGCAAGTGAAGGTCGTA 58.793 47.619 0.00 0.00 0.00 3.43
5986 7173 1.014352 GTGTTGCAAGTGAAGGTCGT 58.986 50.000 0.00 0.00 0.00 4.34
5987 7174 1.003545 CTGTGTTGCAAGTGAAGGTCG 60.004 52.381 0.00 0.00 0.00 4.79
5988 7175 1.268743 GCTGTGTTGCAAGTGAAGGTC 60.269 52.381 0.00 0.00 0.00 3.85
5989 7176 0.740737 GCTGTGTTGCAAGTGAAGGT 59.259 50.000 0.00 0.00 0.00 3.50
5990 7177 1.027357 AGCTGTGTTGCAAGTGAAGG 58.973 50.000 0.00 0.00 34.99 3.46
5991 7178 1.862815 GCAGCTGTGTTGCAAGTGAAG 60.863 52.381 16.64 0.00 39.50 3.02
5992 7179 0.101040 GCAGCTGTGTTGCAAGTGAA 59.899 50.000 16.64 0.00 39.50 3.18
5993 7180 0.749091 AGCAGCTGTGTTGCAAGTGA 60.749 50.000 16.64 0.00 42.09 3.41
5994 7181 0.946528 TAGCAGCTGTGTTGCAAGTG 59.053 50.000 16.64 0.00 42.09 3.16
5995 7182 1.233019 CTAGCAGCTGTGTTGCAAGT 58.767 50.000 16.64 0.00 42.09 3.16
5996 7183 0.520404 CCTAGCAGCTGTGTTGCAAG 59.480 55.000 16.64 2.75 42.09 4.01
5997 7184 0.890542 CCCTAGCAGCTGTGTTGCAA 60.891 55.000 16.64 0.00 42.09 4.08
5998 7185 1.302752 CCCTAGCAGCTGTGTTGCA 60.303 57.895 16.64 0.00 42.09 4.08
5999 7186 2.694760 GCCCTAGCAGCTGTGTTGC 61.695 63.158 16.64 8.49 40.00 4.17
6000 7187 0.607489 AAGCCCTAGCAGCTGTGTTG 60.607 55.000 16.64 4.22 40.49 3.33
6001 7188 0.111253 AAAGCCCTAGCAGCTGTGTT 59.889 50.000 16.64 4.17 40.49 3.32
6002 7189 0.322008 GAAAGCCCTAGCAGCTGTGT 60.322 55.000 16.64 5.74 40.49 3.72
6003 7190 0.035630 AGAAAGCCCTAGCAGCTGTG 60.036 55.000 16.64 6.07 40.49 3.66
6004 7191 0.251634 GAGAAAGCCCTAGCAGCTGT 59.748 55.000 16.64 4.79 40.49 4.40
6005 7192 0.463474 GGAGAAAGCCCTAGCAGCTG 60.463 60.000 10.11 10.11 40.49 4.24
6006 7193 1.631071 GGGAGAAAGCCCTAGCAGCT 61.631 60.000 0.00 0.00 45.12 4.24
6007 7194 1.153066 GGGAGAAAGCCCTAGCAGC 60.153 63.158 0.00 0.00 45.12 5.25
6014 7201 1.616374 CGATAGAGAGGGAGAAAGCCC 59.384 57.143 0.00 0.00 44.43 5.19
6015 7202 1.000394 GCGATAGAGAGGGAGAAAGCC 60.000 57.143 0.00 0.00 39.76 4.35
6016 7203 1.000394 GGCGATAGAGAGGGAGAAAGC 60.000 57.143 0.00 0.00 39.76 3.51
6049 7236 1.898574 GGCACCCAGTCCAACAGTG 60.899 63.158 0.00 0.00 0.00 3.66
6052 7239 3.469863 GACGGCACCCAGTCCAACA 62.470 63.158 0.00 0.00 0.00 3.33
6055 7242 3.311110 GAGACGGCACCCAGTCCA 61.311 66.667 0.00 0.00 38.08 4.02
6094 7281 2.419851 CCTTCTCCACTTGCTCCTCATC 60.420 54.545 0.00 0.00 0.00 2.92
6112 7299 2.971598 CGATGTGGGTGGCCTCCTT 61.972 63.158 22.80 6.35 0.00 3.36
6121 7308 2.362369 CCTCCTCAGCGATGTGGGT 61.362 63.158 20.54 0.00 0.00 4.51
6167 7364 1.115326 TCATCGAGGGCATGATCCGT 61.115 55.000 0.00 0.00 0.00 4.69
6168 7365 0.389556 CTCATCGAGGGCATGATCCG 60.390 60.000 0.00 0.00 29.78 4.18
6182 7379 2.211468 AAACGGCCCCTTCCCTCATC 62.211 60.000 0.00 0.00 0.00 2.92
6183 7380 2.238701 AAACGGCCCCTTCCCTCAT 61.239 57.895 0.00 0.00 0.00 2.90
6184 7381 2.856988 AAACGGCCCCTTCCCTCA 60.857 61.111 0.00 0.00 0.00 3.86
6185 7382 2.361230 CAAACGGCCCCTTCCCTC 60.361 66.667 0.00 0.00 0.00 4.30
6186 7383 3.979497 CCAAACGGCCCCTTCCCT 61.979 66.667 0.00 0.00 0.00 4.20
6187 7384 3.820825 AACCAAACGGCCCCTTCCC 62.821 63.158 0.00 0.00 0.00 3.97
6188 7385 2.203582 AACCAAACGGCCCCTTCC 60.204 61.111 0.00 0.00 0.00 3.46
6189 7386 2.273179 GGAACCAAACGGCCCCTTC 61.273 63.158 0.00 0.00 0.00 3.46
6190 7387 2.203582 GGAACCAAACGGCCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
6191 7388 3.182996 AGGAACCAAACGGCCCCT 61.183 61.111 0.00 0.00 0.00 4.79
6192 7389 2.989253 CAGGAACCAAACGGCCCC 60.989 66.667 0.00 0.00 0.00 5.80
6193 7390 2.989253 CCAGGAACCAAACGGCCC 60.989 66.667 0.00 0.00 0.00 5.80
6194 7391 2.414658 TACCCAGGAACCAAACGGCC 62.415 60.000 0.00 0.00 0.00 6.13
6195 7392 0.323087 ATACCCAGGAACCAAACGGC 60.323 55.000 0.00 0.00 0.00 5.68
6196 7393 1.271707 ACATACCCAGGAACCAAACGG 60.272 52.381 0.00 0.00 0.00 4.44
6314 7928 8.579863 AGTCAAAGAGGAATTTTCTTTATGTGG 58.420 33.333 14.72 6.51 41.60 4.17
6358 7972 8.730680 ACTATTCACGCTATTTTGACTGAAAAT 58.269 29.630 0.00 0.00 44.77 1.82
6364 7978 6.398918 AGTCACTATTCACGCTATTTTGACT 58.601 36.000 0.00 0.00 37.06 3.41
6404 8018 7.151999 TGACTTCACAGCTAAAAGACAAAAA 57.848 32.000 8.45 0.00 0.00 1.94
6446 8064 9.408069 ACTTACTTGCGCACTAGTATATAAATC 57.592 33.333 19.70 0.00 34.71 2.17
6545 8967 4.665833 TGGCTCCCGCATATATATACAC 57.334 45.455 0.00 0.00 38.10 2.90
6547 8969 5.057149 CCTTTGGCTCCCGCATATATATAC 58.943 45.833 0.00 0.00 38.10 1.47
6554 8976 0.983905 TACCCTTTGGCTCCCGCATA 60.984 55.000 0.00 0.00 38.10 3.14
6581 9003 5.521906 TTCCAATCTAGGAACTCATCGAG 57.478 43.478 0.00 0.00 42.56 4.04
6591 9013 7.675161 TGTCTTGTGATATTCCAATCTAGGA 57.325 36.000 0.00 0.00 35.41 2.94
6627 9049 2.040606 ACCCGTGCTGGATACCCT 59.959 61.111 0.00 0.00 42.00 4.34
6644 9066 0.250424 CCATACGGGATCTGCATGCA 60.250 55.000 21.29 21.29 40.01 3.96
6663 9085 0.034896 TGGACAAGACCTCGCCTTTC 59.965 55.000 0.00 0.00 0.00 2.62
6664 9086 0.250338 GTGGACAAGACCTCGCCTTT 60.250 55.000 0.00 0.00 0.00 3.11
6665 9087 1.371558 GTGGACAAGACCTCGCCTT 59.628 57.895 0.00 0.00 0.00 4.35
6677 9099 1.341209 CCTATATGAGCTGCGTGGACA 59.659 52.381 0.00 0.00 0.00 4.02
6680 9102 0.671781 GCCCTATATGAGCTGCGTGG 60.672 60.000 0.00 0.00 0.00 4.94
6681 9103 0.671781 GGCCCTATATGAGCTGCGTG 60.672 60.000 0.00 0.00 0.00 5.34
6696 9118 3.415087 AGGGAGCACATGAGGCCC 61.415 66.667 0.00 4.61 39.12 5.80
6707 9129 2.998316 ATAGAGAAGCAACAGGGAGC 57.002 50.000 0.00 0.00 0.00 4.70
6712 9134 4.455606 CCCCCTTAATAGAGAAGCAACAG 58.544 47.826 0.00 0.00 0.00 3.16
6719 9141 2.716424 CCCATGCCCCCTTAATAGAGAA 59.284 50.000 0.00 0.00 0.00 2.87
6722 9144 2.523841 TCCCATGCCCCCTTAATAGA 57.476 50.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.